Examples of Biophysics 101 Past Projects Published

(101 Students indicated by stars * and year of the course)

Kim JI, .. Wu X*, .. Seo JS (2009) A highly annotated whole genome sequence of a Korean Individual. Nature 460:1011-5. (* Spr 2007)

Drmanac R, .. Wu X*, .. Reid CA (2009) Human Genome Sequencing Using Unchained Base Reads on Self-assembling DNA Nanoarrays. Science submitted. (* Spr 2007)

Rosenbaum AM, Thakuria J, Wu X*, Zaranek AW, Chou MF, Li JB, Aach J, Church GM (2009) Clinical Analysis of Individual Genomes. In preparation (* Spr 2007)

Catic, A*, Collins, C, Church, GM and Hidde L. Ploegh, HL (2004) Preferred in vivo ubiquitination sites. Bioinformatics 2004 Dec 12;20(18):3302-7. (* Fall 2003)

Andrew C. Tolonen*, Dinu F. Albeanu*, Julia F. Corbett*, Heather Handley*, Charlotte Henson* and Pratap Malik* (2002) Optimized in situ construction of oligomers on an array surface Nucleic Acids Research, 30 (20): e107 (* Fall 2000 project)

Simon Kasif, Zhiping Weng, Adnan Derti*, Richard Beigel and Charles DeLisi (2002) A computational framework for optimal masking in the synthesis of oligonucleotide microarrays. Nucleic Acids Research, Vol. 30, No. 20 e106 (* student Fall 1999 & TF 2000)

Ge, H*, Church, GM, Vidal, M (2001) Correlation between transcriptome and interactome data obtained from S. cerevisiae. Nature Genetics, Dec;29(4):482-6.(* Fall 2000)

Aach, J, Bulyk, ML, Church, GM, Comander, J*, Derti, A*, Shendure, J* (2001) Computational comparison of two draft sequences of the human genome. Nature 409, 856-859. (* Fall 2000)

If anyone knows of other relevant publications please let us know.