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List of available measure details for EDS No 37

Measure Description More Info
Cal. FC Calibrated fold change. here
LP Detection P = present (detected), A = absent(not detected) here
LP Intensity Log phase Smax (second maximal probe pair (PM-MM), as described in the paper) averaged from duplicate arrays here
LP sdev Standard deviation of Log Phase Smax. here
Length (bases) Length of RNA in bases. here
RNA type CDS = coding sequence, rRNA = ribosomal RNA, tRNA = transfer RNA, misc_RNA = miscellaneous RNA. here
SP Detection P = present(detected), A = absent (not detected). here
SP FC sig Stationary phase fold change significance. here
SP Intensity Stationary phase Smax, averaged from duplicate arrays here
SP abs change Absolute change of Smax between log and stationary phase. here
SP call Decision of whether the change in Smax was significant between log and stationary phase. here
SP fold change Fold change of Smax between log and stationary phase. here
SP sdev Standard Deviation of Stationary Phase Smax here
SP t-test Stationary phase t-statistic testing the null hypothesis that the mean Smaxes (Given in the LP Intensity and SP Intensity fields) are the same here
gDNA Detection Absolute change of Smax between log phase and genomic DNA. here
gDNA FC sig Genomic DNA fold change significance. here
gDNA Intensity Smax of genomic DNA hybridization. Genomic data is from a single chip. here
gDNA abs change Absolute change of Smax between log and stationary phase. here
gDNA call Decision of whether the change in Smax was significant between log phase and genomic DNA. here
gDNA fold change Fold change of Smax between log and stationary phase. here
gDNA sdev Standard Deviation of genomic DNA Smax. here
gDNA t-test Stationary phase t-statistic testing the null hypothesis that the mean Smaxs (Given in the LP Intensity and Genomic DNA Intensity fields) are the same. here
rev_comp_RNA Detection rev_comp_RNA Detection here
rev_comp_RNA Intensity rev_comp_RNA Intensity here
rev_comp_cDNA Detection rev_comp_cDNA Detection here
rev_comp_cDNA Intensity rev_comp_cDNA Intensity here


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Copyright (c) 2006 by Wayne Rindone and the President and Fellows of Harvard University