These are the measures included in the downloadable Affymetrix Comparison Analysis Data Files Column Name Description Affy ID Affymetrix Probe Set Identifier, which includes the Blattner number and gene name when appropriate. Stat Pairs The number of probe pairs in the probe set. Stat Pairs Used The number of probe pairs in the probe set used in the Detection call. Signal A measure of the relative abundance of a transcript. Detection A call indicating a Present (P), Absent (A), Marginal (M), or No Call (NC) in transcript level of an experiment array. Detection p-value p-value that indicates the significance level of the detection call. Stat Common Pairs The number of common probe pairs on two arrays (experiment versus baseline) after saturation across the probe set is determined. Signal Log Ratio The change in expression level for a transcript between a baseline and an experiment array. This change is expressed as the log2 ratio. A log2 ratio of 1 is the same as a Fold Change of 2. Signal Log Ratio Low The lower limit of the Signal Log Ratio within a 95% confidence interval. Signal Log Ratio High The upper limit of the Signal Log Ratio within a 95% confidence interval. Change A call indicating an Increase (I), Marginal Increase (MI), No Change (NC), Decrease (D), or Marginal Decrease (MD) in transcript level between a baseline array and an experiment array. Change p-value p-value that indicates the significance level of the change call. Descriptions contains information about the location in the genome each probe set represents along with a description of what is found there.