Cluster Files

Interaction files:

Final interaction file^4-6

List of genes containing at least one interaction

List of proteins removed from interaction file

Other:

List of membrane proteins⁷

List of DNA-binding proteins⁷

Name conversion file⁸

References:

1. PT Spellman, G Sherlock, MQ Zhang, VR Iyer, K Anders, MB Eisen, PO Brown, D Botstein, B Futcher: Comprehensive Identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. Mol Biol Cell. 1998 9: 3273-3297
2. TR Hughes, MJ Marton, AR Jones, CJ Roberts, R Stoughton, CD Armour, HA Bennett, E Coffey, H Dai, YD He, et al.: Functional discovery via a compendium of expression profiles. Cell 2000 102: 109-126
3. CJ Roberts, B Nelson, MJ Marton, R Stoughton, MR Meyer, HA Bennett, YD He, H Dai, WL Walker, TR Hughes, et al.: Signaling and circuitry of multiple MAPK pathways revealed by a matrix of global gene expression profiles. Science 2000 287: 873-880
4. B Schwikowski, P Uetz, S Fields: A network of protein-protein interactions in yeast. Nat Biotechnol. 2000 18: 1257-1261
5. P Uetz, L Giot, G Cagney, TA Mansfield, RS Judson, JR Knight, D Lockshon, V Narayan, M Srinivasan, P Pochart, et al.: A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature 2000 403: 623-627
6. T Ito, T Chiba, R Ozawa, M Yoshida, M Hattori, Y Sakaki: A comprehensive two-hybrid analysis to explore the yeast protein interactome. Proc Natl Acad Sci U S A 2001 98: 4569-4574
7. YPD™ http://www.incyte.com/sequence/proteome/databases/YPD.shtml
8. SGD: http://genome-www.stanford.edu/Saccharomyces/

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