***********
ada.dat
***********

>aidB
tgctggataagaatgttttagcaatctcttt
>ada
tcagcgaaaaaaattaaagcgcaagattgtt
>alkA
gcgacaaccggaatatgaaagcaaagcgcag


***********
araC.dat
***********

>araBAD-1 58->106, araC 233->281
tatgccatagcatttttatccataagattagcggatcctacctgacgc
>araBAD-2 132->180, araC 159->207
aaacgcgtaacaaaagtgtctataatcacggcagaaaagtccacattg
>araE 58->106
catgtcgcagcaatttaatccatatttatgctgtttccgacctgacac
>araFG-1 164->212
agaattacagtgagaacgtgcataaatttagcgggaaaagacataagg
>araFG-2 239->287
gaatgcacagcagattaatccataagattagcctggaaatccttgttg
>araJ 79->127
aactattcagcaggataatgaatacagaggggcgaattatctcttggc


***********
arcA.dat
***********

>icd
GTTAATGATTTGTAA
>aldA
GTTAATTAACATCAA
>sodA
GTTAATTAAATGATA
>lctP
GTTAACTAAATGTTA
>glcC
GTTAACTCAATGTTA
>cydA1
GTTAATTATAATATA
>cydA1
GTTAACTAAATGTTA
>cydA2
GTTAATCATGTTTCA
>cydA3
GTTAATAAAAACTCA
>pflA2
gttaattaaaaggga
>traY
GTTAAGTAAATGTTA
>lpdA
GTTAACAATTTTTAA
>gltA/sdhC2
GTTAATTGTAATGAT
>gltA/sdhC2
GTTCACAAAATCATT


***********
argR.dat
***********

>argA-1 32->50
acagaataaaaatacact
>argA-2 11->29 
ttcgaataatcatgcaaa
>argD-1 51->69
agtgattttttatgcata
>argD-2 30->48
tgtggttataatttcaca
>argECBH-1 26->44, argC 110->128
tatcaatattcatgcagt
>argECBH-2 47->65, argC 89->107
tatgaataaaaatacact
>argF-1 48->66
aatgaataattacacata
>argF-2 27->45
agtgaattttaattcaat
>argG-1 73->91
attaaatgaaaactcatt
>argG-2 52->70
tttgcataaaaattcagt
>argG-3 192->210
tgtgaatgaatatccagt
>argI-1 46->64
aatgaataatcatccata
>argI-2 25->43
attgaattttaattcatt
>argR-1 45->63
tttgcataaaaattcatc
>argR-2 24->42
tatgcacaataatgttgt
>carAB-1 32->50
tgtgaattaatatgcaaa
>carAB-2 11->29
agtgagtgaatattctct


***********
argR2.dat
***********

>argA
ACAGAATAAAAATACACTAATTTCGAATAATCATGCAAA
>argD
AGTGATTTTTTATGCATATTTTGTGGTTATAATTTCACA
>argE
AGTGTATTTTTATTCATAAATACTGCATGAATATTGATA
>argF
AATGAATAATTACACATATAAAGTGAATTTTAATTCAAT
>argG
ATTAAATGAAAACTCATTTATTTTGCATAAAAATTCAGT
>argI
AATGAATAATCATCCATATAAATTGAATTTTAATTCATT
>carA
TGTGAATTAATATGCAAATAAAGTGAGTGAATATTCTCT


***********
carP.dat
***********

>carA-1 263->288
catttggtccacttttttctgctcg
>carA-2 165->190
tgcctgtaaaacatgcatgagccac


***********
cpxR.dat
***********

>htrA (degP)            254-269
gtaaattaccgtcag
>yihE                   66-81
gtaaaagcttgtaag
>ppiA                   78-93
gtaaaattaggtaaa
>cpxP (b3913)           56-71
gcaaacatgcgtcag
>cpxR                   56-71
gtaaaacaacgtaaa
>motA                   193-208
gtaaaaagacgtaaa
>proP                   29-44
gcaaacgccagaaaa
>rpoH                   255-270 
gtaaagtggcgtaaa
>b0441 (ppiD)           205-220
gtaaagcactgaaag
>ygjT                   260-275
gtaaaacagtgtaaa
>ygjT                   192-207
gcaaaggggagtaac
>cydD                   397-412
gcaaaacagcgataa


***********
crp.dat
***********

>aldB -18->4
attcgtgatagctgtcgtaaag
>ansB 103->125
ttttgttacctgcctctaactt
>araB1 109->131
aagtgtgacgccgtgcaaataa
>araB2 147->169 
tgccgtgattatagacactttt
>cdd 1 107->129
atttgcgatgcgtcgcgcattt
>cdd 2 57->79
taatgagattcagatcacatat
>crp 1 115->137
taatgtgacgtcctttgcatac
>crp 2
gaaggcgacctgggtcatgctg
>cya 151->173 
aggtgttaaattgatcacgttt
>cytR 1 125->147
cgatgcgaggcggatcgaaaaa
>cytR 2 106->128
aaattcaatattcatcacactt
>dadAX 1 95->117
agatgtgagccagctcaccata
>dadAX 2 32->54
agatgtgattagattattattc
>deoP2 1 75->97
aattgtgatgtgtatcgaagtg
>deoP2 2 128->150 
ttatttgaaccagatcgcatta
>fur 136->158
aaatgtaagctgtgccacgttt
>gal 56->78
aagtgtgacatggaataaatta
>glpACB (glpTQ) 1 54->76  
ttgtttgatttcgcgcatattc
>glpACB (glpTQ) 2 94->116
aaacgtgatttcatgcgtcatt
>glpACB (glpTQ) 144->166 
atgtgtgcggcaattcacattt
>glpD (glpE) 95->117 
taatgttatacatatcactcta
>glpFK 1 120->142
ttttatgacgaggcacacacat
>glpFK 2 95->117
aagttcgatatttctcgttttt
>gut (srlA) 72->94
ttttgcgatcaaaataacactt
>ilvB 87->109
aaacgtgatcaacccctcaatt
>lac 1 (lacZ) 88->110
taatgtgagttagctcactcat
>lac 2 (lacZ) 16->38 
aattgtgagcggataacaattt
>malEpKp1 110->132
ttgtgtgatctctgttacagaa
>malEpKp2 139->161
TAAtgtggagatgcgcacaTAA
>malEpKp3 173->195
TTTtgcaagcaacatcacgAAA
>malEpKp4 205->227
GACctcggtttagttcacaGAA
>malT 121->143
aattgtgacacagtgcaaattc
>melR 52->74
aaccgtgctcccactcgcagtc
>mtl 302->324
TCTTGTGATTCAGATCACAAAG
>nag 156->178
ttttgtgagttttgtcaccaaa
>nupG2 97->119
aaatgttatccacatcacaatt
>nupG1 47->69
ttatttgccacaggtaacaaaa
>ompA 166->188
atgcctgacggagttcacactt
>ompR 161->183
taacgtgatcatatcaacagaa
>ptsH A 316->338
Ttttgtggcctgcttcaaactt
>ptsH B 188->210
ttttatgatttggttcaattct
>rhaS (rhaB) 161->183 
aattgtgaacatcatcacgttc
>rot 1 (ppiA) 182->204 
ttttgtgatctgtttaaatgtt
>rot 2 (ppiA) 129->151
agaggtgattttgatcacggaa
>tdcA 60->82
atttgtgagtggtcgcacatat
>tnaL 73->95
gattgtgattcgattcacattt
>tsx 2 146->168
gtgtgtaaacgtgaacgcaatc
>tsx 1 107->129
aactgtgaaacgaaacatattt
>uxuAB 165->187
TCTTGTGATGTGGTTAACCAAT


***********
cspA.dat
***********

>gyrA1 134->154
gcattcattggcacttctac
>gyrA2 114->134
tccgtaattggcaagacaaa
>gyrA3 86->106
tcaggcattggatgtgaata
>hns 14->34
acttatattggggtggtttg


***********
cynR.dat
***********

>cynR (cynTSX) 38->59, cynT 50->71
GTCATAAGGTAAAAGTCTCAT
>cynR (cynTSX) 6->27, cynT 82->103
CCTATAAGTAAATCCAATGGA


***********
cysB.dat
***********

>cysB 62->102
tggttatagttagcaccttttttattattaaatcgtatta
>cysK-1 110->150
aacaggggtggcttatgccgccccttattccatcttgcat
>cysK-2 66->106
ttatttcccttctgtatatagatatgctaaatccttactt


***********
cytR.dat
***********

>cdd-1
tgtttcacgcgttgcata
>cytR
tcatgaaaattctgtaac
>deoP-1
tgatgcaaacttgtaagt
>tsx
tgatagaactgtgaaacg
>udp
ttatgcaacgcatttgcg


***********
deoR.dat
***********

>deoC-1 644->660
tgttagaattctaaca
>deoC-2 45->61
tgttagaatactaaca
>deoC-OE 923->939
tgtgaaaattttatca


***********
dnaA.dat
***********

>dnaA_1 rpoH-1
aatttattcacaagc
>dnaA_2 rpoH-2
attttatccacaagt
>dnaA_3 nrd
gagttatccacaaag
>dnaA_4 oriC-R1
ttgttatccacaggg
>dnaA_5 oriC-R2
ggggttatacacaac
>dnaA_6 oriC-R3
ttctttggataacta
>dnaA_7 oriC-R4
gagttatccacagta
>dnaA_10   dnaA
gatttatccacagga


***********
fadR.dat
***********

>fadL-1 104->121
agctggtccgacctata
>fadL-2 80->97
cactggtctgatttcta
>fadB 25->42
atctggtacgaccagat
>fabA 57->74
aactgatcggacttgtt
>fadD2 158->175
ggctggtccgctgtttc
>fadD1 72->89
agctggtatgatgagtt
>iclR 30->47
aactcatcggatcagtt


***********
farR.dat
***********

>farR-1 66->76
tgtattgtat
>farR-2
tgtattatta
>farR-3 21->31
tggttaaatt
>farR-4 11->21
cgtattaatg


***********
fhlA.dat
***********

>hypA 68->95, hycA 117->144 
tgtcaTTTCGACATCATCGACAttatt
>hycB 42->69
cgatgAAATGTCATTTTCGACActcat
>fdhF 130->157
caggcTGTCGTCAGTTTTGACGtgacg


***********
fis.dat
***********

>fis-I  
gtcacagtatggtcatttcttaactcatgcgcatc
>fis-II
tcagaggattggtcaaagtttggcctttcatctcg
>fis-III
atcgcaccacgctcattttaaatgcaattctttga
>fis-IV
acgtaaatttgccgattatttacgcaaatttgcgt
>fis-V
atttctttgagtgtaaattttagtcactattttct
>nrd 263->298
tcaatttatctaacctattatgccgttcaagaaat
>oriC-I
gttatacacaactcaaaaactgaacaacagttgtt
>oriC-II
acagtagatcgcacgatctgtatacttatttgagt
>queA  67->102
aaaattcatcgattatattctatccaaaagggggt
>rrnB-P1-1
atgttgcgcggtcagaaaattattttaaatttcct
>rrnB-I
aggctgatttggttgaatgttgcgcggtcagaaaa
>rrnB-II
gcttcgaaacgctcgaaaaactggcagttttaggc
>rrnB-III
gccaggagctgaacaattattgcccgttttacagc
>thrU-I
tcatcgtgtcgcataaaatgtgaccaataaaacaa
>thrU-II
ccctccgttcggctgtttcttcatcgtgtcgcata
>thrU-III
gcacaatgatgttgaaaaagtgtgctaatctgccc
>tyrT-I
aatccgttacggatgaaaattacgcaaccagttca
>tyrT-II
aaaaataactggttacctttaatccgttacggatg
>tyrT-III
gtaatcgaacgattattctttaatcgccagcaaaa


***********
flhCD.dat
***********

>fliA 75->106
GGGTGAAATGAGGGGTTATTTGGGGGTTACA
>flhB 70->101
GGGGCAAAACAGGCGGGATTTAGGGCTTTTG
>fliL 68->99
CGGGGAAAAGACGCGGATTACGGTGCTACCT


***********
fnr.dat
***********

>ndh1 133->155
aaacttgattaacatcaatttt
>ndh2
ttttttgatctcacccggtaaa
>nrfA 124->146
acaattgattaaagacaacatt
>nirB 55->77
gaatttgatttacatcaataag
>nirB 103->125
aaaatttatacaaatcagcaat
>cydA-1 276->298
CAATTTGATCGAGAACAATTTA
>cydA-2 231->253
TAAATTGATCACCGTCGAAAAA
>ansB 53->75
TAAATTGTTTAACGTCAAATTT
>focA-pfl -1291->-1269
GCATTTGTTTACCAACGATCAT
>narK-1 not footprinted
ggtaatgataaatatcaatttt
>narK-2 not footprinted
caatttgatgtaaatcaaacga
>narG not footprinted
ggaattgataacgatcaagagt
>fdnG1 not footprinted
ctttttgatttcgcgcaaaaag
>fdnG2 not footprinted
caaattgacctacctcaatagc


***********
fruR.dat
***********

>aceBAK (glyoxylate shunt enzymes) 235->251
cgttaagcgattcagc
>edd-eda (2 enzymes of Entner-Douderoff pathway) 97->113
actgaaacgtttttgc
>fruBMHKA-1 (enzymes involved in fructose PTS) 86->102
cttgaaacgtttcagc
>fruBMHKA-2 (enzymes involved in fructose PTS) 19->35
gctgaatcgtttcaat
>icd (isocitrate dehydrogenase) 231->247
gctgaatcgcttaacc
>gapB (2nd putative glyceraldehyde 3 phosphate dehydrogenase)
actgaaacgcttcagc
>mtlA (mannitol-specific PTS enzymes) 108->124
actgaatcggttaact
>pckA (PEP carboxykinase) 271->287
ggtgaatcgatacttt
>pfkA 106->122
gctgaattgattcagg
>ppsA (PEP synthase) 86->102
ggtgaatcgttcaagc
>ptsHI (Hpr and enz I of the PTS) 204->220
gctgaatcgattttat
>pykF (pyruvate kinase isoenzyme) 206->222
gctgaaaccattcaag


***********
fur.dat
***********

>cir 177->195
gataattgttatcgtttg
>fepA-fes 160->178
gataactatttgcatttg
>fepB-entC-O1 146->164
aataatgcttctcatttt
>fepB-entC-O2 31->49
ataaatgataatcattat
>fur  65->83
tataatgatacgcattat
>sodA-primary 82->100
ggcattgataatcatttt
>sodA-secondary 54->72
gttcattatagttaatta
>tonB-1 49->67
gaatatgattgctatttg
>tonB-2 2->20
tgaaatgattatgacttc


***********
galR.dat
***********

>galE-1 78->94
gtgtaaacgattccac
>galE-2 -35->-19
gtggtagcggttacat
>galP 1 265->281
ctgaaaccgattacac
>galP 2 83->99
gtgtaatcgcttacac
>galR 15->31
atgtaagcgtttaccc
>galS 95->111
ctgtaaccgtttccat
>mglB 269->285
atgtaaccgctttcaa


***********
gcvA.dat
***********

>gcvT-1 351->371 
tttgaaataaactaatttca
>gcvT-2 319->339
cattatattttctaatgcca
>gcvT-3 159->179
ttaaccataagctaatgtga
>gcvA 52->72 
gattaaaaaaactaataggt


***********
glpR.dat
***********

>glpA1 105->125, glpT 148->168
aatgttcaaaatgacgcatg
>glpA2 73->93, glpT 180->200
actttcgaattatgagcgaa
>glpA3 53->73, glpT 200-220
tatgcgcgaaatcaaacaat
>glpA4 13->33, glpT 240-260
aatggtaaaaaacgaacttc
>glpD1 33->53, glpE 137->157
tatgttcgataacgaacatt
>glpD2 13->33, glpE 157->177
tatgagctttaacgaaagtg
>glpF1 140->160
atggcgcgataacgctcatt
>glpF2 119->139
tatgacgaggcacacacatt
>glpF3 98->118
taagttcgatatttctcgtt
>glpF4 78->98
tttgctcgttaacgataagt
>glpK1 -73->-53
cgcggtcgtaatggatcacg
>glpK2 -115->-95
gcagcgcgaatttgagcaaa
>glpT 108->128
tgtgtgcggcaattcacatt


***********
hipB.dat
***********

>hipB-O1 15->45
ttataatatccccttaagcggataaacttg
>hipB-O2 43->73
ttgacttatcctcactaaaggataaaactt
>hipB-O3 82->112
agcgtttatcccgtagagcggataagatgt
>hipB-O4 110->140
cctttttatccgcgatcgcggatatcgcag


***********
hns.dat
***********

>hns1
tAGGCTGATTT
>hns2
gAAAATTATTT
>hns3
gGGAGTTATTC
>hns4
aCAAATTATTT
>hns5
gCAACAGAGTA
>hns6
aCGCCTGAATA
>hns7
tCGAGAAAGTT
>hns8
tCGCCGGAATT
>hns9
tGGCATGAATA
>hns10
aTAAAGGAATC
>hns11
cTAATTTAATT
>hns12
gCAATTAAATT
>hns13
tGACATGAATC
>hns14
cTGGCTAATTT
>hns15
aCAACTGAATT


***********
hu.dat
***********

>galE
cttatggtatgaaata
>galE
ctaatggagcgaatta
>mu
ctgatgggattagatc


***********
iclR.dat
***********

>aceBAK 107->122
caaaaacaatttcca
>iclR -16->-1
tgaaaatgatttcca


***********
ihf.dat
***********

>ilvGMEDA-1
cactcactattttatttttaaaaaacaacaatttatattgaaattatt
>ilvGMEDA-2
cttggacgaggaaaggcttagagatcaagccttaacgaactaagaccc
>IS1-IRR
gcattatctgaacataaaacactatcaataagttggagtcattaccga
>IS1-IRL
tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccta
>hag
gacgggtggaaacccaatacgtaatcaacgacttgcaatataggataa
>dps
gtgaaaaacaaaactaataaagattcaatgagttagatatattgataa
>REP near avtA
tccggcctacaaattcttccaaattcaatatattgcagaaatcatgta
>REP near fepA
ccggcctacaaaaatcttgccaattcaatatattgcaggaccatgtag
>REP near alr
tccggccaataaaatcctaaaaattcaataagttgatgttctttcatg
>REP at hag
cctacaagttgaattgcaatttattgaatttgcacatttttgtaggcc
>tdcA
attacaattaaatacctttaaatatcaacaagttaaagtataaaaatc
>ompF
atcatataaatagattaaaattgctgtaaatatcatcacgtctctatg
>tdcP
tttatactttaacttgttgatatttaaaggtatttaattgtaataacg
>ompB-A
gcattatcaaacagacaaagggaatcaacgagatgaaaacgcccctgg
>ompB-B
gaaacattattgattctgttgatatgatcacgttatacccaatgtgcg
>ompB-C
ctaaattgttacaaagcatattaaacagcagcttaagtatacaattta
>glnHp2
atatgaaaaaatcgtgccagttttgcaactccttgatttttcgagatg
>ompF-1
tacagcaattttaatctatttatatgatttccttatatttaaattaac
>ompF-2
cgctaccgtgaaagtgctacaaagataaagatttggtttcaaaaagaa
>pfl
agtaaatatttgattatccaaataaaaataaattttaaaaattaacaa
>narGHJI
tacaggtataaaacgtcttaatttacagtctgttatgtggtggctgtt
>put-ihf43
ccaacatcggtgtgctaatagccatctaaagtctccaaaaaattatta
>himD-2
ttcaaagcagctaaaggcgagtaattctctgactcttcgggattttta
>himD-1
cagattgcaggtttcgtcctgtaatcaagcactaagggcggctacggc
>himA
cgaatgtaagaaagttggcgtaaatcaggtagttggcgtaaacttatt
>ilvBN
atcacgttttgtactgaattgcagataacaaaaaaccccgccggagcg


***********
ilvY.dat
***********

>ilvY (ilvC-1) 19->46
gacgttgcaaaaattgcaatgtgacgt
>ilvY (ilvC-2) 50->77 
aatatatcaatttccgcaataaatttc


***********
lacI.dat
***********

>lacZ  17->38
aattgtgagcggataacaatt
>lacZ -384->-363
aaatgtgagcgagtaacaacc
>lacZ 109->130
ggcagtgagcgcaacgcaatt


***********
lexA.dat
***********

>dinD 32->52
aactgtatataaatacagtt
>dinG 15->35 
tattggctgtttatacagta
>dinH 77->97
tcctgttaatccatacagca
>dinI 19->39
acctgtataaataaccagta
>lexA-1 28->48
tgctgtatatactcacagca
>lexA-2 7->27
aactgtatatacacccaggg
>polB(dinA) 53->73
gactgtataaaaccacagcc
>recA 59->79
tactgtatgagcatacagta
>recN-1 49->69
tactgtatataaaaccagtt
>recN-2 27->47
tactgtacacaataacagta
>recN-3 9-29
TCCTGTATGAAAAACCATTA
>ruvAB 49->69
cgctggatatctatccagca
>sosC 18->38
tactgatgatatatacaggt
>sosD 14->34
cactggatagataaccagca
>sulA 22->42
tactgtacatccatacagta
>umuDC 20->40
tactgtatataaaaacagta
>uvrA 83->103 
tactgtatattcattcaggt
>uvrB 75->95
aactgtttttttatccagta
>uvrD 57->77
atctgtatatatacccagct


***********
lrp.dat
***********

>daa-1
ataacgatcttttattctgcatatg
>gcvA-1
actggtgtattttttggttttttat
>gcvA-2
atgccattattttttgatttagtgt
>gcvA-3
ttttgacatttttttagctcttaat
>gcvA-4
ttgtcttattcaaattgactttctc
>ilvIH-1
gaatgtctggtttattctgcatttt
>ilvIH-2
aatgtagaattttattctgaatgtg
>ilvIH-3
cagccgatttattatcaatttaatc
>ilvIH-4
aatggaggattttatcgtttctttt
>ilvIH-5
cctgtttattcttattaccccgtgt
>ilvIH-6
ttaccccgtgtttatgtctctggct
>lrp-1
cctgttaatgaatatctggcatgtt
>lrp-2
aatcgatgttttgctttgacaatcc
>lysU-2
tatttattagtgatatcaacttgag
>lysU-3
gttagtttcgataagataaactgag
>sfa
aataaacagctttacagatcaaaag
>sfa
aaaatacatatttacaacataaaaa
>sfa
agtattaataactaaaacgccaatc


***********
malT.dat
***********

>malP4 127->137
gtggttgaga
>malP3 105->115
ggggatgagc
>malP2 92->102
agggaggagt
>malP1 69->79
caggatgagg
>malE/K-1 234->244 (121->131)
GAGGATGAGA
>malE/K-2 247->257 (108->118)
GGGGAGGAGG
>malE/K-3 271->281 (84->94) 
GGGGTGGAGG
>malS-1 84->94
CAGGATGAGA
>malS-2 60->70
AGGGATGAGT
>malS-3 2->12
GCGGATGAGT

***********
marR.dat
***********

>marR-1 92->116
ttatacttgcctgggcaatattat
>marR-2 57->81
aattacttgccagggcaactaatg


***********
melR.dat
***********

>melAB-1 116->134, melR 149->167
attcccataaactcagat
>melAB-2 78->96, melR 187->205
attcccataaactcagat


***********
metJ.dat
***********

>metA-1 36->52
agctatctggatgtct
>metA-2 28->44
ggatgtctaaacgtat
>metA-3 20->36
aaacgtataagcgtat
>metJ-1 197->213, metB 64->80
ggacgtcaatacatct
>metJ-2 189->205, metB 72->88
atacatctggacatct
>metJ-3 181->197, metB 80->96
ggacatctaaacttct
>metJ-4 173->189, metB 88->104
aaacttctttgcgtat
>metC-1 19->35
agacatccagacgtat
>metE-1 (metR)  158->174 (63->79)
ggatgtgtaaacatct
>metE-2 (metR) 150->166 (71->87)
aaacatctggacggct
>metE-3 (metR) 142->158 (79->95)
ggacggctaaaatcct
>metF-1 66->82
cttcatctttacatct
>metF-2 58->74
ttacatctggacgtct
>metF-3 50->66
ggacgtctaaacggat
>metF-4 
aaacggatagatgtgc


***********
metJ3.dat
***********

>metA-1 28->52
agctatctggatgtctaaacgtat
>metA-2 20->44
ggatgtctaaacgtataagcgtat
>metJ-1 189->213
ggacgtcaatacatctggacatct
>metJ-2 181->205
atacatctggacatctaaacttct
>metJ-3 173->197 
ggacatctaaacttctttgcgtat
>metE-1 (metR) 150->174 (63->87)
ggatgtgtaaacatctggacggct
>metE-2 (metR) 142->166 (71->95)
aaacatctggacggctaaaatcct
>metF-1 58->82 
cttcatctttacatctggacgtct
>metF-2 50->74
ttacatctggacgtctaaacggat
>metF-3 42->66   
ggacgtctaaacggatagatgtgc

***********
metR.dat
***********

>metF-2  122->137
CTGATTTTTCCTCAC
>metF-3 142->157
CTGAAGTTTTTTCAT
>glyA-1  180->195
cggatttcttttcag
>glyA-2 202->217
ATGCAAATTTTTCAC
>metE 224->239, metR -2->13
atgaaagtccttcac
>metE 188->203, metR 34->49
CTGTATATTCCTCAA
>metA  97->112  
TTGAAACTTTCTCAC
>metH 95->110
TTGAACAAATCTCAT

***********
modE.dat
***********

>dmsA
cgatgtatacaagcctatatagcg
>moaA
cgctatatacatgattacatagcg
>modA
cgttatattgtcgcctacataacg


***********
nagC.dat
***********

>glmUS-1 57->80
tccatttcacgatgaaaaaaatg
>glmUS-2 210->233
gtttattcattgatcgaaataag
>manX-1 184->207
gatattttacctttcgaaatttc
>manX-2 119->142
ttattttagatatcgaaaaaatt
>nagE (nagE/B intergenic region) 124->147 (186->209)
tttaatttgcgatacgaattaaa
>nagB (nagE/B intergenic region) 218->241 (92->115)
cttattttatcattcaaaaaatc


***********
narL.dat
***********

>fdnG
tacctcaatagcggta
>frdA
tgctcctttataggta
>narK
taactctttccgggta
>narK
tacatcggtaagggta
>narK
ttactcactatgggta
>narG
gtattccccatgggta
>narG
ttatcctaaaggggta
>dmsA
tcactcgaaagtagta
>napF
taccccgatcggggta
>nirB
tactccttaatgggta
>nrfA
taactctaaagtggta


***********
narP.dat
***********

>fdnG 
taccgctattgaggta
>napF
taccccgatcggggta
>nirB
tacccattaaggagta
>nrfA
taactctaaagtggta
>fdnG reverse complement
tacctcaatagcggta
>napF reverse complement
taccccgatcggggta
>nirB reverse complement
tactccttaatgggta
>nrfA reverse complement
taccactttagagtta


***********
ntrC.dat
***********

>glnA 204->221 
agcaccatgttggtgca
>glnA 172->189
agcactatattggtgca
>glnHp2-1 156->173
cgcaccagattggtgcc
>glnHp2-2 143->160
tgccccagaatggtgca
>glnL 21->38
tgcactaaaatggtgca


***********
ompR.dat
***********

>fadL-1 233->253
aaatcacacttaaaaatgat
>fadL-2  144->164  
agatcatatttgaaaaaaga
>fadL-3 27->47   
gttacagcacgtaacatagt
>fadL-4
aaaccctgtttacaaagtct
>ompC 159->179
tttacattttgaaacatcta
>ompF1 190->210
tttacttttggttacatatt
>ompF2  170->190
ttttctttttgaaaccaaat
>ompF3 148->168
ttatctttgtagcactttca
>ompF4-upstream 470->490
gttacggaatattacattgc


***********
oxyR.dat
***********

>dps  74->113
cgcttgttaccactattagtgtgataggaacagccagaa
>gorA 48->87
atcgtgccggagtaattgcagccattgctggcacctatt
>katG 59->98
gtaagatctcaactatcgcatccgtggattaattcaatt
>oxyRS 21->60
gatagttcatggcgataggtagaatagcaatgaacgatt


***********
pdhR.dat
***********

>pdhR-1 (repressor of pdhR/aceEF/lpdA operon) 123->140
agttgttaaaatgtgca
>pdhR-2 (repressor of pdhR/aceEF/lpdA operon) 32->49
aattggtaagaccaatt


***********
phoB.dat
***********

>phnC 55->77 
ctgttagtcacttttaattaac
>phoA -10->12
ctgtcataaagttgtcacggcc
>phoB-1a-original input  60->82
ttttcataaatctgtcataaat
>phoB-1b-(overlaps 1a by one half-site)  49->71
ctgtcataaatctgacgcataa
>phoE-1a-original input (just 1a&1b-triplet) 77->99
ctgtaatatatctttaacaatc
>phoE-1b (adj & overl 1a by a halfsite)  88->110 
atattattaatctgtaatatat
>phoE-2a-original input (just 2a&2b-triplet) 136->158
ctgtaataaaagcgtaaacaac
>phoE-2b (adj & overl 2a by a halfsite)  125->147
atttattaaatctgtaataaaa
>phoH 146->168
ctgtcatcactctgtcatcttt
>psiF  655->677
CTGGCATATTGCCGTCAgcaaa
>pstS-1a-original input (1a,1c adjacent) 84->106
ctgtcataaaactgtcatattc
>pstS-1c-original input 62->84
cttacatataactgtcacctgt
>ugpB-1a-original input (1a,1c,1e adjacent) 114->136
ttgtcatctttctgacacctta
>ugpB-1c-original input 92->114
ctatcttacaaatgtaacaaaa
>ugpB-1e-original input 70->92
aagttatttttctgtaattcga


***********
phoB3.dat
***********

>phoB 49->82
ttttcataaatctgtcataaatctgacgcataa
>phoE-1 77->110
atattattaatctgtaatatatctttaacaatc
>phoE-2 125->158
atttattaaatctgtaataaaagcgtaaacaac
>pstS 73->106
ctgtcataaaactgtcatattccttacatataa
>ugp-1 103->136
ttgtcatctttctgacaccttactatcttacaa



***********
purR.dat
***********

>carAB 216->242 
ttgctgcgcaagcgttttccagaaca
>codBA 62->88
ATAAAAAGCAATCGTTTTCGTGGGGA
>gcvT 85->111
GGCAAAAGAGAACGATTGCGTTGGGG
>glnB
gctggatgcaaacgatttcaaggaat
>glyA 113->139
cctgaaggtaatcgtttgcgtaaatt
>guaBA 48->74
ggtagatgcaatcggttacgctctgt
>prsA
atcgcaagaaaacgttttcgcgaggt
>purAO1 101->127
tgttgaggaaaacgattggctgaaca
>purA02 2->28
tttttaagcaaacggtgattttgaaa
>purB -205->-179
TGCCGACGCAATCGGTTACCTTGATG
>purC  148->174
atgatacgcaaacgtgtgcgtctgca
>purEK  66->92
GAGCAAGGAAAACGGTTGCGTGGCTG
>purF 
tccctacgcaaacgttttctttttct
>purH 102->128
GCGTTGCGCAAACGTTTTCGTTACAA
>purL 71->97
tttccacgcaaacggtttcgtcagcg
>purMN 59->85
cagtctcgcaaacgtttgctttccct
>purR1 40->66
tgtaaaggcaaacgtttaccttgcga
>purR2 not upstream
gaaacgagcaaacgtttccactacaa
>purT 33->59
GACACACGCAAACGTTTTCGTTTATA
>pyrC 46->72
tgcaaaggaaaacgtttccgcttatc
>pyrD 82->108
AGGTTCGGAAAACGTTTGCGTTTTTT
>speA
tgaaaaagaaaccggttgcgcagttg


***********
rhaS.dat
***********

>rhaS 183-233, rhaB 55-105
atctttccctggttgccaatggcccattttcctgtcagtaacgagaaggt
>rhaT 73-123
ttaatgccgtgattgccagtaaatcgacaacggcggcaacaggcgaaagg


***********
rpoD15.dat
***********

>ada
GTGACCGGGCAGCCTAAAGGCTATCCT
>alaS
TTGCCGACTGAACGCATACGGTATTTT
>amn-P2
GTGACATACTATCGGATGTGCGGTAAT
>argCBH-P1
TTGACACACCTCTGGTCATGATAGTAT
>aroH
TAGAGAACTAGTGCATTAGCTTATTTT
>aroP
TTGATCTGACGGAAGTCTTTTTGTAAC
>atpB-P1
CTTTCTGCCTAACGTTTTGTTTATGAT
>clpP-P2
CTGATAATCCGTCCATAAGGTTACAAT
>div
TTTTCACGTTTGTGTTACCTGTATGAG
>flaA
TTTGTTGCGCTCAAGACGCAGGATAAT
>fumA
TTGTTAAAAAAGTGTGTAGGATATTGT
>glnA-P1
TTAATGTTTCCATTGAAGCACTATATT
>glnH-P1
TTTTCATCAGGTTTTACGCTAAATAAT
>ilvIH-P3''
TTTATTATCAATTTAATCCTCTGTAAT
>lacI
ATGATAGCGCCCGGAAGAGAGTCAATT
>lpp
TTCTCAACATAAAAAACTTTGTGTAAT
>metBL
TTGACGTCCATTAACACAATGTTTACT
>pepD-P1
CTGCCTCTCCCTGACGCGGGATAAAGT
>narG
TTCAGAGCGTTACCTTGCCCTTAAACA
>pyrBI-P1
CTATAAGTCGGATGAATGGAATAAAAT
>pyrG-P2
GTGGCACAGGTCATGTTCGGGTATACT
>rbs
TTTTCCCAACTCAGTCAGGATTAAACT
>sodB
TTGTCTCACCTTTTAATTTGCTACCCT
>trp-P2
GTGACATTTTAACACGTTTGTTACAAG
>tyrP-P2
TTAACACTTCATGACCGTGAATAGAGT
>uxuAB
TTGACATGTCTTACCAAAAGGTAGAAC
>zwf
TTTACAGTTTTCGCAAGCTCGTAAAAG


***********
rpoD16.dat
***********

>amn-P1
TTCACATTTCTGTGACATACTATCGGAT
>ampC
TTGTCACGCTGATTGGTGTCGTTACAAT
>araBAD 
CTGACGCTTTTTATCGCAACTCTCTACT
>argF
TTGTGAAATGGGGTTGCAAATGAATAAT
>argR-P2
TTGATAAAATCCCGCTCTTTCATAACAT
>aroF
TTGAAAACTTTACTTTATGTGTTATCGT
>atpI
TTGAAATCACGGGGGCGCACCGTATAAT
>bioA
TTGTAAACCTAAATCTTTTCAATTTGGT
>cdh
TTGTCACGATTTTGCGTTACCCTTGCAT
>cysK-P2
ATGTCATTATTTCCCTTCTGTATATAGA
>deo-P3
TCGCCGTATCAGCGAATAACGGTATACT
>dnaK-P2
TTGAAACCAGACGTTTCGCCCCTATTAC
>dnaN-P4
ATATCAAAGAAGATTTTTCAAATTTAAT
>dnaQ-P1
TTTTCTCGCGTCCGCGATAGCGTAAAAT
>g30k-rpmF-P1
TTTCCATCAGATATAGCGTATTGATGAT
>gal-P1
TTGTTATGCTATGGTTATTTCATACCAT
>gal-P2
TTGTTATGCTATGGTTATTTCATACCAT
>gene-x
TTTACATTGCAGGGCTATTTTTTATAAG
>glyA
TTGTCAAGACCTGTTATCGCACAATGAT
>grpE
TTGAAACCCTGAAACTGATCCCCATAAT
>gut
ATAACACTTTTAAATCTTTCAATCTGAT
>htrA
TTTAGTTCGGAACTTCAGGCTATAAAAC
>ileR-P1
ATGCCAGCAGAGTTTTTTATGCGTTAAT
>ilvGMEDA-P2
TTTACAAAACCTATGGTAACTCTTTAGG
>lep
TTGTAGTGTAGAATGCGGCGTTTCTATT
>lep
TTGTAGTGTAGAATGCGGCGTTTCTATT
>malE
TGGAAAGAGGTTGCCGTATAAAGAAACT
>malK
TTTAAGCCATCTCCTGATGACGCATAGT
>malT
TAGAAAGGTTTCTGGCCGACCTTATAAC
>manX
ATAAAATAATTTTTTCGATATCTAAAAT
>ompA-P1
TTGTAAGTTTTCAACTACGTTGTAGACT
>ompA-P2
TTGTAAGTTTTCAACTACGTTGTAGACT
>ompC
TGGATTATTCTGCATTTTTGGGGAGAAT
>proU-P3
TTGCCTCAGATTCTCAGTATGTTAGGGT
>pyrBI-P2
TTGCGCCGCTTCTGACGATGAGTATAAT
>recA
TTGATACTGTATGAGCATACAGTATAAT
>relA
TTATAAAACTGGAACCTATTCGTATAGT
>rplT
TTAACGTTTTTAACTTTTTAATTAGAAT
>rpmH-P1
TTGCGCTTTACCCATCAGCCCGTATAAT
>rpoD-Pb
TTTAGAGCACTATCGTGGTACAAATAAT
>rpsJ
TTGCGTTCGGTGGTTAAGTATGTATAAT
>sdh-P2
TGGGCAGCTTCTTCGTCAAATTTATCAT
>smp
TTGCTTCTGGCAACATTAAGTCTCAAAT
>tnaA
TAGACAAAAACTCTGAGTGTAATAATGT
>trmA
TGGACATCTGATGAGCAATCCCTACAAT
>trp
TTGACAATTAATCATCGAACTAGTTAAC
>trxA-P1
ATGTGTTTTGCTCATAGTGTGGTAGAAT
>uvrD-P1
TTGGCATCTCTGACCTCGCTGATATAAT


***********
rpoD17.dat
***********

>aceE
TATAAAAGCGCGGCAACTAAACGTAGAAC
>alkA
ATGAAAGCAAAGCGCAGCGTCTGAATAAC
>ansB
TTCACGTTGTAAATTGTTTAACGTCAAAT
>araC
TAGACACTTTTGTTACGCGTTTTTGTCAT
>araJ
TTGCTGGTCGTTATCCTGCAAGCTATCAC
>argCBH-P2
TCGATAAATGGCGGTAATTTGTTTTTCAT
>argE-P1
TTCATAAATACTGCATGAATATTGATACT
>argR-P1
TTGCATAAAAATTCATCTGTATGCACAAT
>aroG
TTTACACATTCTGACGGAAGATATAGATT
>asnB
TTTTCACCGCCAAATCGCTTGCGCACAGT
>aspC
TTGGAATTTTGTAAATCTCCCGTTACCCT
>atpB-P2
TTGCCGCTGATCGTTACGTGGGTTTTGGT
>bioB
TTGTAAACCAAATTGAAAAGATTTAGGTT
>c62.5
CTCCCACATCCTGTTTTTAACCTTAAAAT
>carAB-P1
TTGACTTTTAGCGCCCATATCTCCAGAAT
>cir-P1
TTGATAATTGTTATCGTTTGCATTATCGT
>cir-P2
TTGATAATTGTTATCGTTTGCATTATCGT
>clpP-P1
TTGAAATATGGTGATGCCGTACCCATAAC
>crp
GAGACACAAAGCGAAAGCTATGCTAAAAC
>crr-P2-I
CTGGCAGTTGACCGTGGTAATGATATGAT
>cspA-P1
TTGCATCACCCGCCAATGCGTGGCTTAAT
>cya
TTTACGGTCAATCAGCAAGGTGTTAAATT
>cyoA
TTTACAGTAATGTAACCTTCCCGTAAAAT
>cysD
TTCATTCGTTCTCTTACGCTCCCTATAGT
>cysE
TTGCGGAAAAAACGCGCGCGAGGCAGCAT
>cysJIH
TTATTAGTTATCGCTATCCCGTCTTTAAT
>dnaA-P2
AAGATCTCTTGCGCAGTTTAGGCTATGAT
>dnaN-P1
TTGCCGGGCGAAGTGGCGTTCTTTATCGC
>dnaN-P3
TTCAGAAGACGGTGGCGGAGTACTACAAG
>melA
TTTTCTGCAGATTCGCCTGCCATGATGAA
>pnp
CTGACGGCAGCAATTCACTGGAAACTAAT
>dnaQ-P2
TTGCCCAGACACGAACCATCGGTGAAAAT
>dsda
TTTAAATACTATACGACAGCGACATTTAT
>fabB
TTGTTCGGCGTACAAGTGTACGCTATTGT
>fdhF
ATGACCCCACATAAAATGTGGCATAAAAG
>fes
TTGCAAATGCAAATAGTTATCAATAATAT
>fur-Pa
TTTTCATTTAGGCGTGGCAATTCTATAAT
>fur-Pb
TTTTCATTTAGGCGTGGCAATTCTATAAT
>g30k-rpmF-P2
TTGACTCTATGACGTTACAAAGTTAATAT
>glnS
TTGTCAGCCTGTCCCGCTTATAAGATCAT
>glpD
TTACCTAAAGCGCGATTCTTTGCTAATAT
>gltA-P2
TTGACCAATTCATTCGGGACAGTTATTAG
>gltB
TTGACCTGTATCAGCTTTCCCGATAAGTT
>gnd
TTTATACTTTAATAAGTACTTTGTATACT
>gyrB
AAGATGTTTACCGTGGAAAAGGGTAAAAT
>hisA
TTAATAAATAGTTAATTAACGCTCATCAT
>hisB
TTTAAATCTTTGTGGGATCAGGGCATTAT
>ilvBN
TTGTCTCCCCTGTAAAGCTGTGCTTGTAT
>ilvC
TTTCCGCAATAAATTTCCTGTCATATAGT
>ilvGMEDA-P1
TTTATTTTTAAAAAACAACAATTTATATT
>ilvIH-P1
TTGCTTAAGCAAGATCGGACGGTTAATGT
>ilvIH-P2
TTTTCACCTTTCCTCCTGTTTATTCTTAT
>ilvIH-P3'
TTAAAAAAATAGAGAAATTGCTGTAAGTT
>ilvY
TTGATATATTCACAACGTCACATTGCAAT
>infC
TTAACGGATGTATCCGTTTAGTCTATGAT
>katE
TTCACTAAACGCATATTAAAAATCAGAAA
>leu
TTGACATCCGTTTTTGTATCCAGTAACTC
>lexA
TTCCAAAATCGCCTTTTGCTGTATATACT
>lpd
TTTAAAAATTGTTAACAATTTTGTAAAAT
>manA
TTGCGGCTCCAGGTTACTTCCCGTAGGAT
>metA-P1
TCGACATTGGCAAATTTTCTGGTTATCTT
>metA-P2
TTTTCTCTCCTTTTAGTCATTCTTATATT
>metJ-P1
TTGAGCAAATCCCAAATAGCCGTTAAAAT
>metJ-P2
TTGAGCAAATCCCAAATAGCCGTTAAAAT
>metJ-P3
ATGTCACGGTAACGCCTGTACGGTAAACT
>nagB-P1
CTTACATTTTACTTATTGAGGTGAATAAT
>nagB-P2
TTTACTGGCTAAACCAGAAAACTTATTTT
>nagD
TTGCTGGAAAATTAATGTGCTTTTATAGT
>nagE
TTCACACACTCTGTAGCAGATGATCTAAC
>nrd
TTGCAAGAGGGTCATTTTCACACTATCTT
>nusA
TTGCATTTTTTACCCAAAACGAGTAGAAT
>ompB
TGTATACTTAAGCTGCTGTTTAATATGCT
>ompF
TTGAAACCAAATCTTTATCTTTGTAGCAC
>orf83-P2
GTAGCACCGTGAGTTATACTTTGTATAAC
>pabA-P1
TAAGCGAAGCCGGGGAATCTGAGTAAAAT
>pdx
TTCGCAAGTATGCCTGGCCGCGAGATTAT
>pepD-P2
TTGACAACATTTTCTGCTAACCCTGTGAC
>pgsA
TTGAAACATTGATGTCTCTGTAGCAACAT
>pheST
TTGACTTTTATCGCCGTAGCCTTTTCAAT
>phoB
CTGACGCATAATGACGTCGCATTAATGAT
>ppc
TTGACGTCACCGCTTTTACGTGGCTTTAT
>ptr
TTGCGCAATCTATCCGCTTACTTTATGAT
>purE
TTTTCCTTGCTCTCTTTCCGTGCTATTCT
>purMN
TCGCAAACGTTTGCTTTCCCTGTTAGAAT
>purR
TTCCCCTTTTCGTCAAGATCGGCCAAAAT
>putP-P4
TTGTGAATAACCAGCGCTTCCGGCAGGAT
>putP-P5
CGGCAAGTTTCGACATTGCCGATAATAAT
>pX
TTCACCTTCGGTTTCAAACAGCATACCAT
>pyrC
GTGCAAAGGAAAACGTTTCCGCTTATCCT
>pyrD
TTCCCTTTTGGTCCGAACTCGCACATAAT
>pyrE-P1
TAGGAATAACCGCCGGAAGTCCGTATAAT
>rep
GTCACATTCAAATGCGATTCTGCTACAAT
>rho
TGGACGCCCGGCGTGAGTCATGCTAACTT
>rplJ
TTGTCTACAATCTTACCCCCACGTATAAT
>rplK
TTGCACAAGGCGTGAGATTGGAATACAAT
>rpmH-P2
TTGACTCCGGAGTGTACAATTATTACAAT
>rpmH-P3
TAGACAAAAATTGGCTTAATCGATCTAAT
>rpoD-Pa
CAGCTAAAACGCACGACCATGCGTATACT
>rpsO
TTGCGATAACAGGTCGCTACGAGTAGAAT
>rpsU-P1
TCGCCCCTGGAGAAAGCCTCGTGTATACT
>ruv-P1
TGGATATCTATCCAGCATTTTTTTATCAT
>sdh-P1
TTGTAATGATTTTGTGAACAGCCTATACT
>serC
ATGATAAAACCGATAGCCACAGGAATAAT
>spc
TACCCATATCCTTGAAGCGGTGTTATAAT
>speB
TTGAAGAGTTCGAGGCAGGTTTGTACGGT
>str
TTGACACCTTTTCGGCATCGCCCTAAAAT
>trpR
GTTACTGATCCGCACGTTTATGATATGCT
>tsx-P2
ATATTTTTGTGAGCAATGATTTTTATAAT
>tufB
TTGCATGAACTCGCATGTCTCCATAGAAT
>tyrB
TCGATCTTCGCCTTCTTCCGGTTTATTGT
>tyrP-P1
TTGACGAAGCAGCCGTTATGCCTTAACCT
>udf-Px
TTTACATCAACCCGCATTGGTCCTACACT
>uvrA
TATTCATTCAGGTCAATTTGTGTCATAAT
>uvrB-P3
TGGATAACCATGTGTATTAGAGTTAGAAA
>uvrC-P2
TTCAAAGTTGCAATAAAAACCGCTAATAT
>uvrC-P3
TTGTCTGAACGTGAATTGCAGATTATGCT


***********
rpoD18.dat
***********

>nupG
CAAAAAACCAGTCCGCGAAGTTGATAGAAT
>btuB
TGGACAGTAACTTGTTACAACCTGTAGCAT
>carAB-P2
TTGATTTACGTCATCATTGTGAATTAATAT
>clpB
TTGAATAATTGAGGGATGACCTCATTTAAT
>cspA-P2
TTGACGTACAGACCATTAAAGCAGTGTAGT
>dapA
TTGCTTTTAATGCCATACCAAACGTACCAT
>dapB
CTGGCGGCGTAGCGATGCGCTGGTTACTCT
>dapD
TTGACAGAGGCCCTCAATCCAAACGATAAA
>dnaK-P1
TTGATGACGTGGTTTACGACCCCATTTAGT
>dnaN-P2
TTGCAGGAAAAACTGGTCACCATCGACAAT
>dnaN-P5
TTGTCATCGTAAACCTATGAAATTTACCGT
>fepA
TTGATTGCAGAAATATATTGATAATATTAT
>gltA-P1
TTGACAATCATTCAACAAAGTTGTTACAAA
>hemA-P1
TTGAGATACGTTGCAGTTATAACCCTTAAT
>ileR-P2
GAGAAAAGCAAAAGGTGAGGGAATTACAAA
>ilvGMEDA-Pe 
TTGCCAGCCCACGGTCGGTCGACTTACTGT
>lac
TTTACACTTTATGCTTCCGGCTCGTATGTT
>oxyR
TTGATAGGGATAATCGTTCATTGCTATTCT
>p-Int
CTGAAAAGGCTGGTGCATTTGGTGTATGAT
>pabA-P2
CCGGCGTAACCCGGATTTGCCGCTTATACT
>phe
TTGACAGCGTGAAAACAGTACGGGTACTGT
>prs
TTGATGCGGTGCTTTCCTGGCTGTTAGAAT
>ptsH
TTGGTTCAATTCTTCCTTTAGCGGCATAAT
>purF-P1
TACGCAAACGTTTTCTTTTTCTGTTAGAAT
>pyrF
CTGTTAATTTTTTATTTCCACGGGTAGAAT
>rpsA-P3
TTGAGCAAGTGATTGAAAAAGCGCTACAAT
>rpsU-P2
TTTACAAAGCAGCAGCAATTGCAGTAAAAT
>ssb-P3
TTGGTAATGGTACAATCGCGCGTTTACACT
>sulA
TTGTCACTGGATGTACTGTACATCCATACA
>tonB
TTGAATATGATTGCTATTTGCATTTAAAAT
>trxA-P2
TTTACGAAAGCGTATCCGGTGAAATAAAGT
>umu
CTGGCAAGAACAGACTACTGTATATAAAAA
>uvrB-P2
GTGATGAACTGTTTTTTTATCCAGTATAAT
>valS-P1
TTGCCACCGCTTTCACAGAAGTGGTAGACT


***********
rpoD19.dat
***********

>crr-P2-II
GTGAGCTTGCTGGCGATGAACGTGCTACACT
>aceB
TGGAAATTGTTTTTGATTTTGCATTTTAAAT
>araE
CTGACACCTGCGTGAGTTGTTCACGTATTTT
>argE-P2
TTTGCGCTGAAACAGTCAAAGCGGTTATGTT
>carB
TTATCGAGTTAATTGAGCAGTACCGTAAAAC
>cysK-P1
TAGATATGCTAAATCCTTACTTCCGCATATT
>deo-P1
TTCGAACATCGATCTCGTCTTGTGTTAGAAT
>deo-P2
TCGAAGTGTGTTGCGGAGTAGATGTTAGAAT
>dnaA-P1
GTGCCCGCCTCGCGGCAGGATCGTTTACACT
>fadL
TTGCAACATTCCAGCTGGTCCGACCTATACT
>glnA-P2
TTAAAAGTTGGCACAGATTTCGCTTTATCTT
>glnH-P2
TTGCAAAACTGGCACGATTTTTTCATATATG
>glnL
TTCGCGCTTTTTATCCGTAAAAAGCTATAAT
>gyrA
TTTACCTCAAACTGCGCGGCTGTGTTATAAT
>ilvIH-P3
TTTATTCTGCATTTTTTATTGAATGTAGAAT
>ilvIH-P4
TTTATTCTGCATTTTTTATTGAATGTAGAAT
>malPQ
TCAACATCGAGCCTGGCAAACTAGCGATAAC
>pckA
TCCACACCTAAAATGCTATTTCTGCGATAAT
>proU-P1
ATCACGCAAATAATTTGTGGTGATCTACACT
>putA
TTAACATGGTTGCACAAAGTTGCAACATCAT
>recF-P1
AGGACGTTCGCTATTACTTAAATGGTATGCT
>rpoD-Phs
TTGAAAAACTGTCGATGTGGGACGATATAGC
>rpoH-P2
TTCACAAGCTTGCATTGAACTTGTGGATAAA
>ssb-P1
TTGGAATGCATTACCCGGAGTGTTGTGTAAC
>tyrR
TTGACAGAAACCTTCCTGCTATCCAAATAGT


***********
rpoE.dat
***********

>rpoE P2 75->111
cggaactttacaaaaacgagacactctaaccctttg
>rpoH P3 86->122
ttgaacttgtggataaaatcacggtctgataaaaca
>htrA (degP)  39->75
cggaacttcaggctataaaacgaatctgaagaacac


***********
rpoH2.dat
***********

>groE 81->131
gaattttttttctttttcccccttgaaggggcgaagcctcatccccattt
>htpGp1 52->102
gagcaggatcacctgctctcgcttgaaattattctcccttgtccccatct
>htpGp2 43->93
cacctgctctcgcttgaaattattctcccttgtccccatctctcccacat
>rpoD 367->417
ggtacaaataatgctgccacccttgaaaaactgtcgatgtgggacgatat
>clpP 80->130
taacaacaaaagattgttatgcttgaaatatggtgatgccgtacccataa
>ftsJ 74->124 
gtattttttgcttacgttgggattgaaaacgggtcattctaccgccatct
>gapA 162->212
cacatttttatcgtaattgccctttaaaattcggggcgccgaccccatgt


***********
rpoH3.dat
***********

>dnaKp1 123->172 
aaaaaatttttgcatctcccccttgatgacgtggtttacgaccccattt
>dnaKp2 48->97
gcaaaaaaatgaaattgggcagttgaaaccagacgtttcgcccctatta
>lon 84->133 
aatttttcctctattctcggcgttgaatgtgggggaaacatccccatat
>grpE 46->95
gatgacaatgtgagtgcttcccttgaaaccctgaaactgatccccataa
>clpB 39->88
cacattaatctggtcaataaccttgaataattgagggatgacctcattt
>ibpA 79->128 
aaaaaaagtccgctgataaggcttgaaaagttcatttccagacccattt
>hslV 69->118
gcattcggctcgccgccgggggttgaaaccctcaaaatcccccccatct
>rrnB
gaaaattattttaaatttcctcttgtcaggccggaataactccctataa


***********
rpoN.dat
***********

>glnAp2 83->99
TGGCACAGATTTCGCT
>glnHp2  54->70
TGGCACGATTTTTTCA
>fdhF 51->67 
tggcataaaagatgca
>hyc 36->52, hyp 160_>176
tggcacaaaaaatgct
>hyp 31->47, hyc 165-181
tggcacaattattgct
>pspF 84->100, pspA 52->68
tggcacgcaaattgta


***********
rpoS17.dat
***********

>1 219->248
TTGTATGATTGAAATTAGCGGCCTATACT
>3 70->99
ACGCACGTTATGTTTAAAGGCACTACACT
>6 34->63 
CCTTCCCCCTCCGTCAGATGAACTAAACT
>10 46->75
TCACCAGACTTATTCTTAGCTATTATAGT
>12 102->131
CCGGAGGGTGTAAGCAAACCCGCTACGCT
>cfa 40->69
TCTCACAAAGCCCAAAAAGCGTCTACGCT
>aldB -60->-31
GCGAAGATTTCGCCAGTCACGTCTACCCT
>gor 31->60 
CTGGCACCTATTACGTCTCGCGCTACAAT
>csgB 100->129, csgD 626-655
GTTATTAAAAATATTTCCGCAGACATACT
>17
TTGCGTCGCAACCGACAATTACGTATTCT
>22 36->65
CGGTAAGCAACGCGAAATTCTGCTACCAT
>23 15->44
CTGCAATGGAAACGGTAAAAGCGGCTAGT
>24 40->69
GTTTCAGGATAAAGAGGGAGATCTACCAT
>26  34->63
AGGGAATAATAATTTCTATTTTATATTAT
>27 20->49
ATTCCCTTCGCCATTTCCTTGAGCAAACT


***********
rpoS18.dat
***********

>osmY 251->281
CCGAGCGGTTTCAAAATTGTGATCTATATT
>osmC 30->60
CCTCGTGCTGTTTCTCACGTAGTCTATAAT
>aidB 18->48
CTGTCATGAATCCATGGCAGTGACCATACT
>11 290->320
CGTATTCAACCGTCCGGAACCTTCTATGAT
>18
TTGGCGTAAATCAGGTAGTTGGCGTAAACT
>katE 136->166
CTGTAGTTTAGCCGATTTAGCCCCTGTACG
>treA 57->87
TCGATCATGCAGCTAGTGCGATCCTGAACT


***********
soxS.dat
***********

>zwf 92->127
cgtaatcgcacgggtggataagcgtttacagtttt
>sodA 71->106
aagtacggcattgataatcattttcaatatcattt
>nfo 52->87
cgtcatcgcataaaccactacatcttgctcctgtt
>micF 279->314
tttgacagcactgaatgtcaaaacaaaaccttcac
>pqi5 357->392 
ggcaaaaGCAgaaactgtaaaacgcagcagtagca
>fumC 80->115
ttacatggcacgaaagaccaaacatttgttatcaa
>soxS
ttaccccgcattaaagcgctgctaacccccggcga
>oriC
gtagatcgcacgatctgtatacttatttgagtaaa
>araB  69->104, araC 235-270
tGCCATAGCATTTTTATCCATAAGATtagcggatc
>micF2  214->249  
gaaataagcacctaacatcaagcaataataattca
>zwf2 secondary site 118->153
ttttgccgcactttgcgcgcttttcccgtaatcgc
>zwf3 secondary site 39->74 
gtacagtgcaccgtaagaaaattacaagtataccc
>sodA2 secondary 109->144
atctcgggcattttcctgcaaaaccatacccttac
>soxS2 secondary 78->113 (soxR -27->-8)
ctttaatgcggggtaatttcttttccataaatcgc


***********
torR.dat
***********

>torC-1 (torC/torR intergenic region)
ctgttcatat
>torC-2 (torC/torR intergenic region)
ctgttcatat
>torC-3 (torC/torR intergenic region)
ccgttcatcc
>torC-4 (torC/torR intergenic region)
ctgttcatat


***********
trpR.dat
***********

>aroH 143->167
aatgtactagagaactagtgcatt
>mtr 50->74
tttgtactcgtgtactggtacagt
>trp 25->49 
atcgaactagttaactagtacgca
>trpR 45->69
atcgtactctttagcgagtacaac


***********
tus.dat
***********

>TerA
aattagtatgttgtaactaaagt
>TerB
aataagtatgttgtaactaaagt
>TerC
atataggatgttgtaactaatat
>TerD
cattagtatgttgtaactaaatg
>TerE
ttaaagtatgttgtaactaagca
>TerF
ccttcgtatgttgtaacgacgat


***********
tyrR.dat
***********

>aroF1 69->91
tatggattgaaaactttacttt
>aroF2 92->114 
tgtgtaaataaaaatgtacgaa
>aroF3 144->166 
agtgtaaatttatctatacaga
>aroG1  69->91
agtgtaaaaccccgtttacaca
>aroLM1 86->108
agtggaattttttctttacaat
>aroLM2 109->131
ggtgtattgagattttcacttt
>aroLM3 162->184
aatgtaatttattatttacact
>aroP1  45->67
aacggaattgcaaacttacaca
>aroP2 68->90
gatgtaaacaaattaatacaac
>mtr1 108->130
tctgtaaaataatatatacagc
>mtr2 138->160 
tgcgtaatcatcgctgaacagc
>tyrB1 -20->2
cgtgtttcaaaaagttgacgcc
>tyrB2
cccgtaaacctggagaaccatc
>tyrP1 67->89
tatgtaacgtcggtttgacgaa
>tyrP2 90->112
attgtacatttatatttacacc
>tyrR1 69->91
tgtgtcaatgattgttgacaga
>tyrR2 113->135
gctgaccggatatctttacgcc