Motif Search v1.1 April 7, 1998 by Jason D. Hughes

Motif:
cgttaagcgattcagc	1	1	1	-5.63224
actgaaacgtttttgc	2	1	1	-3.57078
cttgaaacgtttcagc	3	1	1	-3.54471
gctgaatcgtttcaat	4	1	1	-1.18743
gctgaatcgcttaacc	5	1	1	-2.50611
actgaaacgcttcagc	6	1	1	-2.06142
actgaatcggttaact	7	1	1	-4.1468
ggtgaatcgatacttt	8	1	1	-5.6658
gctgaattgattcagg	9	1	1	-2.99239
ggtgaatcgttcaagc	10	1	1	-3.79602
gctgaatcgattttat	11	1	1	-3.08391
gctgaaaccattcaag	12	1	1	-4.12226
****************
Average: -3.52582	Std. Dev.: 1.31306

Sites scoring better than avg-2*sdev:
GGTGAAACGTTTTATT	1	4528	1	-4.53147
AGTGAATCGGTTCAAT	1	121841	1	-3.93549
GGTGAAACGTTTCCCT	1	180535	1	-5.86647
GGTGAAGCGTTTTTGC	1	212203	0	-4.79455
ACTGAATCCGTTCTCC	1	216470	0	-6.05235
GCTGAATGGATTCAGT	1	331096	1	-3.50322
ACTGAATCCATTCAGC	1	331096	0	-2.79902
ACTGAATCGATAAACT	1	343851	0	-4.79343
GCTGAAACGGTTAATG	1	496293	0	-4.9941
GGTGAAGCGATTGAAC	1	568407	1	-5.82383
AGTGAAACGATTATCG	1	616305	1	-5.83196
ACTTAAGCGATTTAAC	1	669947	1	-6.12611
AGTGGATCGTTTCTGC	1	703657	1	-6.06752
GCTGAAGCGGTTAACC	1	746482	0	-4.62637
GGTGTATCGATACAGC	1	747020	1	-6.05209
GCTGTATCGATACACC	1	747020	0	-6.1203
GTTGAATCGCTTCTGA	1	748079	1	-6.08654
GGTGAAACGGTTTTCT	1	786750	1	-6.11779
CCTGAAACGTTTTTAT	1	874280	1	-4.89401
CGTGAAACGATTCTTT	1	954610	0	-5.32933
GCTGAACCGCTTTACC	1	973799	1	-5.55063
GCTGAATCGGTAAATC	1	1025106	0	-5.47367
CCTGAAACGTTAAAAG	1	1086208	0	-6.09271
GGTGAAGCGTTCAAAC	1	1112042	1	-6.0245
GCTGAATCGCTTAACC	1	1194100	1	-2.50611
GGTTAAGCGATTCAGC	1	1194100	0	-4.53362
CCTGAATCTGTTCAGC	1	1260690	1	-5.53339
GCTGACACCTTTCAGC	1	1297593	1	-5.96725
GGTGAAACGTTTGATT	1	1452586	0	-6.14091
CCTGCATCGCTTCACC	1	1487171	0	-6.06146
GCTGAAACCCTTAATT	1	1492987	0	-5.93237
ACTGAAACGATAAAAG	1	1496965	1	-5.55557
CCTGAAACCATTCATG	1	1524784	0	-6.06817
GGTCAATCGCTTTAGC	1	1556633	1	-5.90987
GCTGCAACGCTTAAGT	1	1598858	0	-5.64802
GCTAAATCGGTTCAAG	1	1617037	0	-6.00933
GCTGAAGCGTTTCTTT	1	1665226	0	-4.6427
GCTGAATCGTTAATAT	1	1676111	0	-4.89401
GCTGAGTCGATTAATC	1	1744802	1	-5.44735
GCTGAAACCATTCAAG	1	1753501	0	-4.12226
GGTGAATCGTTCAAGC	1	1785223	1	-3.79602
GTTGAATCCATACAGC	1	1801713	1	-5.71739
GCTGAATCGTTTTTTC	1	1860026	1	-3.76415
GCTGAATCGTATTATC	1	1862545	1	-5.9845
GGTGAAACGCTTCACG	1	1883928	1	-4.09761
CGTGAAGCGTTTCACC	1	1883928	0	-4.75154
ACTGAAACGTTTTTGC	1	1932726	0	-3.57078
GGTGAATCGTTTCTGT	1	1934825	1	-2.45423
ACAGAAACGATTCACC	1	1934825	0	-5.44735
CGTGAATCCATTCTAT	1	1941596	1	-6.00809
GTTTAATCGCTTCTGC	1	2097044	1	-5.55847
CCAGAATCGCTTCAGT	1	2129405	1	-5.47367
ACTGAAGCGATTCTGG	1	2129405	0	-4.32562
ACTGAATCCATTGAAC	1	2140480	1	-6.12611
GCTGAAGCGATTTTAG	1	2144234	1	-5.28113
GCTGAAACGATACATT	1	2148070	1	-4.2908
CCTGAATTGTTAAAGC	1	2149810	0	-6.04422
GGTGAATCGCTTTGGT	1	2160445	1	-6.08654
ATTGAAACGATTCAGC	1	2261535	1	-3.00757
GCTGAATCGTTTCAAT	1	2261535	0	-1.18743
GCTGAAACGTTTCAAG	1	2261602	1	-2.28605
CTTGAAACGTTTCAGC	1	2261602	0	-3.54471
GCGGAATCGGTTCAAC	1	2276164	1	-5.1372
GCTGCAACGTTTTAAC	1	2352112	1	-5.64802
GCTGACACGCTTAAGC	1	2410741	0	-5.2803
GCTGAATCGGTGAACC	1	2425436	1	-6.06146
CCTGAATCGCTTGTGC	1	2462301	1	-5.59365
GCTGAAACGATAAAGT	1	2507565	0	-3.5866
GCTGAATTGTTGCAGC	1	2530848	0	-5.28208
GCTGAATCGATTTTAT	1	2531565	1	-3.08391
GCTGAATGGTTTTATC	1	2601037	1	-5.90111
GCTTAATCGCTTTACG	1	2624371	0	-5.83497
GGTGAATCCATTCTCG	1	2645052	0	-5.83374
ACTGAAGCGATTTAGT	1	2734968	1	-3.83792
ACTAAATCGCTTCAGT	1	2734968	0	-5.05382
GGTTAAACGATCCAAC	1	2769562	0	-5.99996
GCTGGAACGCTTCTGT	1	2828920	1	-5.88441
GATGAAACGGTTCATC	1	2836114	1	-6.10966
CCTGAAATGATTAACT	1	2855015	1	-5.7317
AGTGAAACGCTCCACC	1	2894117	1	-5.85015
GCTGAATCGAATCTTT	1	2920506	0	-6.05147
CCTGAATCGTTTTCGC	1	2943342	1	-5.34233
GGTGAAACGATTTTCT	1	3009342	1	-4.81851
AGTGAAATGATTAACC	1	3031021	0	-5.9148
GCTTAACCGTTTCAGT	1	3065217	1	-5.31333
ACTGAAACGGTTAAGC	1	3065217	0	-3.33439
ACTGAAACGCTTCAGC	1	3071833	1	-2.06142
GCTGAAGCGTTTCAGT	1	3071833	0	-2.17783
GCTGAAATGGTTAAAC	1	3108712	0	-5.22817
AGTGAAACGCTTTACG	1	3132584	0	-5.95836
GGTGAATCGGTTAACG	1	3245386	0	-4.85975
GGTGAAACGATAATAT	1	3360824	0	-6.09147
GCTGAAACGGTTGAAG	1	3433141	1	-6.09271
GCTGAATTGCTTCTCT	1	3436942	1	-5.1471
GCTGATTCGCTTTAAC	1	3465862	0	-5.72498
GGTGAATCGATACTTT	1	3530170	1	-5.6658
ACTGAATCGATCCATT	1	3611165	0	-4.54211
GCTGAAACGGTAAAAG	1	3625156	0	-6.09271
GCTGAAGCGTTTATCG	1	3685480	0	-5.4818
GGTGAAACCATTAACT	1	3739801	0	-5.52039
ACTGAATCGGTTAACT	1	3769785	0	-4.1468
GCTGAATCGATAAAAT	1	3782823	0	-3.69481
GCTGAATCGGTGAAGC	1	3863945	1	-5.10595
GCTTAATCGATCTAAT	1	3881675	1	-6.06817
GCTGAATCGCTCTATC	1	3945512	0	-5.29932
GCTGAATCCCTACTGC	1	3993050	0	-5.76978
CGTTAATCGCTTTAGC	1	4054684	1	-5.90987
CCTGAATCAATTCAGC	1	4105011	1	-4.23411
GCTGAATTGATTCAGG	1	4105011	0	-2.99239
GCTTAATCGGTTCAAC	1	4109233	1	-3.9552
GTTGAACCGATTAAGC	1	4109233	0	-5.20479
GCTGAAGCGATTTCGC	1	4150808	0	-5.65249
CGTTAAGCGATTCAGC	1	4212807	1	-5.63224
GCTGAATCGCTTAACG	1	4212807	0	-3.46162
ACTGAAGCGATTCTGC	1	4232330	1	-3.37011
GCAGAATCGCTTCAGT	1	4232330	0	-4.37506
GGTGAAACGCTACACT	1	4305285	0	-5.45573
GCTCAAGCGATTTAGC	1	4338712	0	-5.84354
GTTGAATCGCTTTTAC	1	4360254	0	-5.23924
CCTGAATCACTTCACC	1	4363370	1	-5.97808
GGTGAAGTGATTCAGG	1	4363370	0	-5.48913
ATTGAAGCGATTAAAT	1	4436584	0	-5.85508
GTTGAAGCGTTTAAAC	1	4476186	1	-4.92589
GTTTAAACGCTTCAAC	1	4476186	0	-5.68981
CGTGAAGCGTTTCTGC	1	4515413	0	-4.79455
GTTGAATTGTTTAACC	1	4555681	0	-5.68981
ACTCAAACGATTAACC	1	4576332	0	-6.12611
CCTGAAACTGTTCAGC	1	4586987	0	-6.04422
GCTAAATCGTTTCTCT	1	4600107	1	-5.65793
GCTGAATCGTTACACG	1	4638703	1	-4.0576
CGTGTAACGATTCAGC	1	4638703	0	-5.71562
****************
Average: -26.5421	Std. Dev.: 4.69322