Protocol for Preparing pKO3/pKOV
Link to knock-out protocol, map.
Day 1:
- Take an LB/chloramphenicol (20 ug/ml) plate from the cold room and allow it to come up to room temperature. (~30 min).
- Locate the pKO3, pKOV stains in the -80oC freezer. (On last check on 8/21/00, it was in Dereth's "Most Requested Strains" box lying unracked on the bottom shelf of the -80oC. Many lab members also have their own frozen stock). (Keep on dry ice if streaking at your bench. Or...)
- Bring labeled plates and streaking tool to freezer area. Streak straight from frozen stock.
- Store plate upside down in 30oC incubator overnight.
- Make sure you have small LB/chloramphenicol vials ready for stabbing tomorrow. Have however many vials you need to prepare cultures for.
Day 2:
- Check your plate from Day 1 - make sure colonies have grown. pKOV grows a little slower than pKO3.
- Remove LB/chloramphenicol vials from cold room and allow to come up to room temperature.
- Wipe down bench with alcohol.
- Turn bunsen burner on to low flame.
- Clean your stab-picking tool (eg., platinum wire) by wiping it down with alcohol, heating in flame.
- Pick a small, isolated colony and stab it 3 times in the agar in the vial. Use a triangle-shaped pattern. Repeat for all the colonies you want to pick.
- Wipe down the picking tool after each pick.
- Place vials, loosely capped, in the 30oC incubator overnight.
Day 3:
- Check vials to make sure your stabs have grown.
- Label each vial with name of strain, the date, and your initials. Also label top of tube with small, circular label.
- Wrap the edge of the cap with a small piece of Parafilm.
Note: pKO3 and pKOV (formerly pKO5) are the most popular strain requests. We sometimes receive requests for other strains - most of these are kept in the "Most Requested Strains" box in -80oC freezer. You can check the old -80o green binder or the new -80o maroon binder directory for any others. Only pKO3 and pKOV need to grow in LB/chloramphenicol. Most others can be grown on LB only.
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