AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00290_aful_reg_100.orf -o00290_aful_100.ace -a/home/amcguire/genomes/ORF_aful.txt -z/home/amcguire/genomes/aful.fna -g0.49 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.49 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 AF0219 180 2-isopropylmalate synthase (leuA-2) #2 AF0629 31 3-isopropylmalate dehydratase, small subunit (leuD-1) #3 AF0632 80 nifU protein (nifU-3) #4 AF0633 173 isoleucyl-tRNA synthetase (ileS) #5 AF0932 41 conserved hypothetical protein #6 AF0933 22 branched-chain amino acid aminotransferase (ilvE) #7 AF0957 53 2-isopropylmalate synthase (leuA-1) #8 AF1014 126 dihydroxy-acid dehydratase (ilvD) #9 AF1667 158 sulfate adenylyltransferase (sat) #10 AF1669 48 adenylylsulfate reductase, subunit B (aprB) #11 AF1671 64 coenzyme F390 synthetase (ftsA-2) #12 AF1720 182 acetolactate synthase, large subunit (ilvB-1) #13 AF1778 105 stage V sporulation protein (spoVG) #14 AF1779 57 2-hydroxyacid dehydrogenase, putative #15 AF1963 174 aconitase (acn) #16 AF1985 45 ketol-acid reductoisomerase (ilvC) #17 AF2013 275 coenzyme F390 synthetase (ftsA-3) #18 AF2014 63 sugar transporter, putative #19 AF2100 106 acetolactate synthase, large subunit (ilvB-4) #20 AF2199 82 3-isopropylmalate dehydratase, large subunit (leuC) #21 AF2224 38 valyl-tRNA synthetase (valS) #22 AF2225 64 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (hpcE-2) #23 AF2421 58 leucyl-tRNA synthetase (leuS) #24 AF2425 85 methanol dehydrogenase regulatory protein (moxR) Motif number 1 TATTTGAAAAAAGGTTTTTAAATCGGTGGCTT 1 26 0 AAGTTTTAAA 0.959943 -155 AACGGAAAAACGTTTTAAATCAGCTGATT 5 8 1 AAAGTTTAAA 0.91182 -34 AAGCATCGGGAAGATTTTGACAAAAAACAAAA 8 44 0 AAGTTTTACA 0.859969 -83 GTAGAAAATTTTTTGAACTCCTTTGCC 9 6 1 AAATTTTGAA 0.922446 -153 TTTATTTTCGAAGAGTTTGAAAATTGCGCGGT 9 39 1 AAGGTTTAAA 0.947873 -120 TTAATGATTAAAGGTTTTCGAATTTTCAAAGA 9 79 0 AAGTTTTGAA 0.954372 -80 AGGTTTCGAAAAATATTTTAATGATTAAAGGT 9 96 0 AAAATTTAAT 0.668047 -63 AGCCTTATATAAAGGTTTCGAAAAATATTTTA 9 108 0 AAAGTTTGAA 0.900252 -51 AGAAAAAAGAAAAATTTTAGAGCT 11 3 0 AAATTTTGAG 0.868515 -62 AATGCAATAAAAACTTTTAGATTTAGAAAAAA 11 27 0 AAATTTTGAT 0.875979 -38 GCTGCAAGCTAAGTTTTAAAAACTACTTACCT 12 21 0 AAGTTTAAAA 0.584572 -162 GGGCGAACCAAAACTTTTTAAAGCGCATGCTG 12 71 1 AAATTTTAAA 0.931636 -112 AGTGGTATATAAGAATTTTGATTGCAGGAAAC 13 46 0 AAGATTTGAT 0.755432 -60 TTAAGAGTTTGGCTTTTGCTTCAA 14 3 1 AAGGTTTGCT 0.707193 -55 AAAAGATAAAAAGGTTTTGAAGCAAAAGCCAA 14 19 0 AAGTTTTAAG 0.930112 -39 AAGATTTTTAAGCAGATTCGCT 15 163 0 AAGTTTTAAG 0.930112 -12 TTTGCAGCAAAAGGCTTTAAAAGCCACTGCCT 17 184 0 AAGCTTTAAA 0.77757 -92 CAGGATGGTGAAGTATTTAAATCCTGCCTCCC 17 229 1 AAGATTTAAT 0.779687 -47 TATTTGCATAAAATTTTTAGCTTTTTAATTCT 18 32 1 AAATTTTGCT 0.644132 -32 GTCAGGCTGCAAGAGTTTAAAACCCATCGAAT 19 38 0 AAGGTTTAAA 0.947873 -69 CAACCTTAGCAAACTTTTTAAAATTATAATCA 19 75 1 AAATTTTAAA 0.931636 -32 GTAAGAAGGCAAAGGTTTTAAGAGTTATCTCA 22 18 1 AAAGTTTAAG 0.851688 -47 GCCAAACGCCAAATTTTTTAATCCCATTTATT 23 26 1 AAATTTTAAT 0.890019 -33 *** **** *** Masking position 6 Map Score: 28.993 Number of sites scoring better than the average of aligned sites = 438 Number in coding regions = 299 Number in noncoding regions = 139 Number of orfs with sites within 600 bp upstream = 158 Fraction of orfs with sites within 600 bp upstream = 0.0253774 Motif number 2 AAATCCCTCCAATTTTTGTT 3 1 1 AAATCCCTCC 0.839185 -80 CCTTCCCTCACTCTCCCTCC 4 1 0 CTCTCCCTCC 0.993407 -173 TTTCAGCCTACTATCCCTCCTAATTTTTGC 4 64 1 CTATCCCTCC 0.987129 -110 TTTCACCCTTCATTTCTGGTT 6 2 1 TTCACCCTTC 0.806301 -21 TATTGTTCTTCACACCATCCAACCAAAACT 8 79 1 CACACCATCC 0.950435 -48 ACTTTTTCATCACTCCCACCACCAGCATGC 12 95 0 CACTCCCACC 0.925707 -88 TTCTAACCCTCCTTTCAAATTT 13 94 0 CTAACCCTCC 0.989528 -12 ATTTAAATACTTCACCATCCTGAAAAACGA 17 221 0 TTCACCATCC 0.893175 -55 TCCCATAGCTCTAACCCTCCTACCATTCTT 24 43 1 CTAACCCTCC 0.989528 -43 ********** Masking position 5 Map Score: 12.3711 Number of sites scoring better than the average of aligned sites = 444 Number in coding regions = 412 Number in noncoding regions = 32 Number of orfs with sites within 600 bp upstream = 24 Fraction of orfs with sites within 600 bp upstream = 0.0038548 Motif number 3 GTACACAAACAAAAATTGGAGGGATTT 3 6 0 AAAATGGAGG 0.94516 -75 TGGGGCAGCAAAAATTAGGAGGGATAGTAGGC 4 69 0 AAAATGGAGG 0.94516 -105 AAAATATTTTAATGATTAAAGGTTTTCGAATT 9 87 0 AATGTAAAGG 0.867725 -72 AAATGTATGAAAAGGTTGGAGGTGAGTTGA 10 29 1 AAAGTGGAGG 0.988704 -20 GAAAAAAGAAAAATTTTAGAGCT 11 2 0 AAATTAGAGC 0.69439 -63 GAGAGTAACGAAATTTGAAAGGAGGGTTAGAA 13 84 1 AAATTAAAGG 0.882452 -22 TGAACCCAGAAAAGATAAAAAGGTTTTGAAGC 14 28 0 AAAGTAAAAG 0.573715 -30 TCCCCGGTTCAAATCCGGGAGGCGGGACTTGA 15 47 0 AAATCGGAGG 0.910388 -128 CAGTTCCAGAAAAGCTGACAGGTTGATTCT 17 9 0 AAAGTACAGG 0.902007 -267 ACCCGAGTTCAAATCTCGGCGGCCCCATCATT 17 91 0 AAATTGGCGG 0.835307 -185 ACCGGCTCCCAAAGCCGAGAGGATCACCAGGC 17 124 1 AAAGCAGAGG 0.952413 -152 GCCCCTCTGTAATGATTAAAGGCAGTGGCTTT 17 165 1 AATGTAAAGG 0.867725 -111 GTTTTGGAAGAATGGTAGGAGGGTTAGAGCTA 24 48 0 AATGTGGAGG 0.965635 -38 **** * ***** Masking position 2 Map Score: 9.78382 Number of sites scoring better than the average of aligned sites = 446 Number in coding regions = 406 Number in noncoding regions = 40 Number of orfs with sites within 600 bp upstream = 46 Fraction of orfs with sites within 600 bp upstream = 0.00738837 Motif number 4 AAAAAAGGTTTTTAAATCGGTGGCTTTAGCCTTAA 1 17 0 TTTAAACTCT 0.970114 -164 GAGAATTTTATTTATTTCGATAAATTGTTATCTAA 1 126 1 TTTATTCTAT 0.763555 -55 AACCTTTTTTAATTCCGCCCCTACTTAGCTC 2 8 1 TTTAATCCCT 0.965503 -24 ACAATTAAAGTTTAATACCTTCCCTCACTCTCCCT 4 13 0 TTTAATCTCT 0.978111 -161 TGATAACTTTTTTAATCCACCGGCTGTTCAGGTTT 4 148 1 TTTAATCCCT 0.965503 -26 GGAAAAACGTTTTAAATCAGCTGATTAACTCGCCG 5 14 1 TTTAAACCAT 0.867679 -28 TCTAAAAGTTTTTATTGCATTGCCTTAACTCTGCA 11 38 1 TTTATTCTCT 0.909191 -27 ACCAAAACTTTTTAAAGCGCATGCTGGTGGTGGGA 12 77 1 TTTAAACACT 0.836522 -106 TTTTTAGCTTTTTAATTCTTTAAATTTCC 18 45 1 TTTAATCTAT 0.935117 -19 TGATTATAATTTTAAAAAGTTTGCTAAGGTTGATT 19 72 0 TTTAAAATCT 0.699615 -35 GAGATAACTCTTAAAACCTTTGCCTTCTTACGCCA 22 14 0 TTAAAACTCT 0.789904 -51 CGCCAAATTTTTTAATCCCATTTATTAGCCACTTT 23 32 1 TTTAATCTAT 0.935103 -27 ****** * * ** Masking position 4 Map Score: 9.89349 Number of sites scoring better than the average of aligned sites = 52 Number in coding regions = 35 Number in noncoding regions = 17 Number of orfs with sites within 600 bp upstream = 24 Fraction of orfs with sites within 600 bp upstream = 0.0038548 Motif number 5 GGTGGCTTTAGCCTTAAAACTGG 1 4 0 GCCTTAAAAC 0.914715 -177 CGTTTTCGGTGCCTTAGATAACAATTTATC 1 144 0 GCCTTAGATA 0.947105 -37 GAACTCCTTTGCCTTTTATTTTCGAAGAGT 9 25 1 GCCTTTTATT 0.706158 -134 AAATTCGAAAACCTTTAATCATTAAAATAT 9 86 1 ACCTTTAATC 0.777812 -73 TTTTTTCACAGCCTTATATAAAGGTTTCGA 9 119 0 GCCTTATATA 0.920481 -40 TTATTGCATTGCCTTAACTCTGCATC 11 49 1 GCCTTAACTC 0.970779 -16 TATCGAACCCGCCTTAGCTCAGAGGTAGAG 15 125 0 GCCTTAGCTC 0.957247 -50 AAAAGCCACTGCCTTTAATCATTACAGAGG 17 168 0 GCCTTTAATC 0.972757 -108 TCTTAGAAAAGCCTTAAATACTTTTTTAAT 20 22 0 GCCTTAAATA 0.963779 -61 ********** Masking position 5 Map Score: 7.35612 Number of sites scoring better than the average of aligned sites = 129 Number in coding regions = 109 Number in noncoding regions = 20 Number of orfs with sites within 600 bp upstream = 22 Fraction of orfs with sites within 600 bp upstream = 0.00353357 Motif number 6 ATACGTATTCTTGTTGCAATTACTTGGATT 1 77 0 TTGTTGCAAT 0.787854 -104 CGTATTTGATTTGTAGCAGTTGCCGAGAAT 1 102 1 TTGTAGCAGT 0.904872 -79 CTACTTACCTTTGTAGGAAA 12 1 0 TTGTAGGAAA 0.839485 -182 AAAACTTAGCTTGCAGCAGTGCAATTACCT 12 36 1 TTGCAGCAGT 0.951565 -147 AGAATTTTGATTGCAGGAAACGTTAGATTA 13 37 0 TTGCAGGAAA 0.915211 -69 TAAAAAGGTTTTGAAGCAAAAGCCAAACTC 14 15 0 TTGAAGCAAA 0.95136 -43 AAGATTTTTAAGCAGATTCGCTCAGT 15 159 0 TTTAAGCAGA 0.797135 -16 ACGAATGCGTTTGCAGCAAAAGGCTTTAAA 17 195 0 TTGCAGCAAA 0.975841 -81 AGCTAAAAATTTTATGCAAATAAATATGCA 18 24 0 TTTATGCAAA 0.605378 -40 GGAGCTATTTCAGCAATCTGCTATTTG 24 8 1 TTTCAGCAAT 0.886173 -78 ********** Masking position 8 Map Score: 6.58097 Number of sites scoring better than the average of aligned sites = 381 Number in coding regions = 344 Number in noncoding regions = 37 Number of orfs with sites within 600 bp upstream = 37 Fraction of orfs with sites within 600 bp upstream = 0.00594282 Motif number 7 TTCTTGCAGTTCTATTTGAAAAAAGGTTTTTA 1 38 0 TTATTGAAAA 0.878164 -143 TCGTTTTCGGTGCCTTAGATAACAATTTATCG 1 143 0 TCCTTGATAA 0.788404 -38 CTTTGCCTTTTATTTTCGAAGAGTTTGAAAAT 9 31 1 TTTTTGAAGA 0.934412 -128 CGGTTTTGAATGTCTTTGAAAATTCGAAAACC 9 67 1 TTCTTGAAAA 0.966273 -92 TTTAATTTTTTTTTAGAAAAATGTATGAAA 10 9 1 TTTTTGAAAA 0.86085 -40 GATGAAAAAGTTCTCTGGAAAAGAGTTCATTG 12 114 1 TCTCTGAAAA 0.842188 -69 CACCTCTAACTCCTTTAGAAAAGAAGTAAAAG 12 154 0 TCTTTGAAAA 0.957722 -29 TAACCGTTTGTTTCTTAGAAAAGCCTTAAATA 20 32 0 TTCTTGAAAA 0.961778 -51 AATATATGTGTGTTTTGGAAGAATGGTAGGAG 24 59 0 TTTTTGAAGA 0.934412 -27 * **** ***** Masking position 6 Map Score: 5.91979 Number of sites scoring better than the average of aligned sites = 55 Number in coding regions = 35 Number in noncoding regions = 20 Number of orfs with sites within 600 bp upstream = 25 Fraction of orfs with sites within 600 bp upstream = 0.00401542 Motif number 8 CCTTTTTTAATTCCGCCCCTACTTAGCTC 2 13 1 TCCGCCCCTA 0.891551 -19 TCCTAATTTTTGCTGCCCCACCATGATGGTA 4 81 1 TCTGCCCCAC 0.929881 -93 TTTTCATCACTCCCACCACCAGCATGCGCTT 12 91 0 TCCACCACCA 0.650224 -92 AGCATTCAAGTCCCGCCTCCCGGATTTGAAC 15 42 1 TCCGCCTCCC 0.994581 -133 ACCATGGGATCTCCGCCTGCCGCGGAGTGGC 15 78 1 CCCGCCTGCC 0.944256 -97 TGGGACTGTAGTCCGCCACTCCGCGGCAGGC 15 92 0 GCCGCCACTC 0.941686 -83 GAACTCGGGTCACCGGCTCCCAAAGCCGAGA 17 113 1 CCCGGCTCCC 0.893543 -163 CAGGCTACCCTACGGCCCCTCTGTAATGATT 17 151 1 TCGGCCCCTC 0.895655 -125 AGTATTTAAATCCTGCCTCCCTCATGACAGA 17 240 1 TCTGCCTCCC 0.969444 -36 TTTAAACTCTTGCAGCCTGACAAAATCAACC 19 49 1 TCAGCCTGAC 0.647796 -58 GTGTCCACCTCACAGAAACTTGA 21 26 0 GCCACCTCAC 0.848072 -13 CTTTGCCTTCTTACGCCACAC 22 1 0 TACGCCACAC 0.778603 -64 * ********* Masking position 7 Map Score: 4.80174 Number of sites scoring better than the average of aligned sites = 782 Number in coding regions = 737 Number in noncoding regions = 45 Number of orfs with sites within 600 bp upstream = 35 Fraction of orfs with sites within 600 bp upstream = 0.00562159 Motif number 9 TGCAACAAGAATACGTATTTGATTTGTAGCAGTTGCCGA 1 89 1 AACTTGTTAG 0.989916 -92 CGGAAATAATAAGCTTTTTGGTTTGAAAGAGGAGGAGTA 3 35 0 AGCTTGTTAG 0.953436 -46 GAGTGGGTAAAAAAACTTTGGCCTTCCAGAAGGTTTAA 7 10 0 AAATTGCTAG 0.897311 -44 GTGAAAAAAAATACATCATAGGTTAGGAG 9 140 1 AACATGTTAG 0.932501 -19 CAATGCAATAAAAACTTTTAGATTTAGAAAAAAGAAAAA 11 21 0 AAATTGTTAA 0.878688 -44 TAAGTTTTAAAAACTACTTACCTTTGTAGGAAA 12 5 0 AACTTCTTAG 0.927079 -178 AAATTCTTATATACCACTTTGTTTGAGAGTAACGAAATT 13 60 1 AACTTGTTAG 0.989918 -46 CTTTTGCTGCAAACGCATTCGTTTTTCAGGATGGTGAAG 17 203 1 AACTTGTTAG 0.989918 -73 TTATTTGCATAAAATTTTTAGCTTTTTAATTCTTTAAAT 18 31 1 AAATTGTTAA 0.878688 -33 GCTTTTTAAGTTAACCGTTTGTTTCTTAGAAAAGCCTTA 20 36 0 TAATTGTTAG 0.854981 -47 * ** ** * ** ** Masking position 9 Map Score: 6.60369 Number of sites scoring better than the average of aligned sites = 31 Number in coding regions = 22 Number in noncoding regions = 9 Number of orfs with sites within 600 bp upstream = 12 Fraction of orfs with sites within 600 bp upstream = 0.0019274 Motif number 10 GGGATAGTAGGCTGAAAAATAAGGGTTTAC 4 51 0 GCTGAAAAAT 0.929529 -123 GGAATTTTGACATGCAAAAGCATATACCAT 4 106 0 CATGCAAAAG 0.702048 -68 TAATTGCACTGCTGCAAGCTAAGTTTTAAA 12 33 0 GCTGCAAGCT 0.82476 -150 TGGTGGGAGTGATGAAAAAGTTCTCTGGAA 12 104 1 GATGAAAAAG 0.838673 -79 TTTGGCTTTTGCTTCAAAACCTTTTTATCT 14 18 1 GCTTCAAAAC 0.858701 -40 GAGCGAATCTGCTTAAAAATCTT 15 162 1 GCTTAAAAAT 0.670193 -13 TTTAACGGACGCTGCAACACGGAGC 16 31 1 GCTGCAACAC 0.912874 -15 AAAGCCTTTTGCTGCAAACGCATTCGTTTT 17 198 1 GCTGCAAACG 0.960987 -78 ACTTCACCATCCTGAAAAACGAATGCGTTT 17 213 0 CCTGAAAAAC 0.831722 -63 ATTTTGTCAGGCTGCAAGAGTTTAAAACCC 19 45 0 GCTGCAAGAG 0.969109 -62 ATAGCAGATTGCTGAAATAGCTCC 24 5 0 GCTGAAATAG 0.858099 -81 ********** Masking position 6 Map Score: 4.49321 Number of sites scoring better than the average of aligned sites = 974 Number in coding regions = 920 Number in noncoding regions = 54 Number of orfs with sites within 600 bp upstream = 50 Fraction of orfs with sites within 600 bp upstream = 0.00803084 Motif number 11 AAACAAAACATTTATTTGTTTTAATCACAAAA 8 20 0 TTATTGTTTT 0.911359 -107 AACAAATAAATGTTTTGTTTTTTGTCAAAATC 8 32 1 TGTTTTTTTT 0.792984 -95 TTAGAAGTGCTTCATTATTTTTTAAGTTTTGG 8 101 0 TTATTTTTTT 0.938571 -26 TAACCTATGATGTATTTTTTTTCACAGCCTTA 9 133 0 TGATTTTTTT 0.948589 -26 TTTAATTTTTTTTTAGAAAAATG 10 2 1 TTATTTTTTT 0.938571 -47 TTGCTGCAAACGCATTCGTTTTTCAGGATGGT 17 206 1 CGATTGTTTT 0.792546 -70 GATTATTTATTCTTTTTGATTAATCGT 19 6 1 TTATTTTTTT 0.938571 -101 ** *** ***** Masking position 6 Map Score: 1.44807 Number of sites scoring better than the average of aligned sites = 32 Number in coding regions = 16 Number in noncoding regions = 16 Number of orfs with sites within 600 bp upstream = 17 Fraction of orfs with sites within 600 bp upstream = 0.00273049 Motif number 12 GTTTTAAGGCTAAAGCCACCGATTTAAAAAC 1 14 1 TAAACCACCG 0.975587 -167 GATAACTTTTTTAATCCACCGGCTGTTCAGG 4 149 1 TTAACCACCG 0.892432 -25 AAGAACAATAAGAAAGCATCGGGAAGATTTT 8 58 0 AGAAGCATCG 0.793087 -69 TTAAAACCACCTCTAACTCCTT 12 171 0 TAAACCACCT 0.918538 -12 AGAATCAACCTGTCAGCTTTT 17 1 1 AGAACAACCT 0.852836 -275 AAAAGGCTTTAAAAGCCACTGCCTTTAATCA 17 177 0 AAAACCACTG 0.885197 -99 GCAAGAGTTTAAAACCCATCGAATACGATTA 19 31 0 AAAACCATCG 0.945589 -76 GCAGCCTGACAAAATCAACCTTAGCAAACTT 19 60 1 AAAACAACCT 0.875407 -47 GGCTTTTCTAAGAAACAAACGGTTAACTTAA 20 39 1 AGAACAAACG 0.696388 -44 CGGTTAACTTAAAAAGCACCGAACTAACTTG 20 58 1 AAAAGCACCG 0.959348 -25 **** ****** Masking position 4 Map Score: 4.2077 Number of sites scoring better than the average of aligned sites = 246 Number in coding regions = 215 Number in noncoding regions = 31 Number of orfs with sites within 600 bp upstream = 30 Fraction of orfs with sites within 600 bp upstream = 0.0048185 Motif number 13 AAATCCCTCCAATTTTTGTTTGTGT 3 6 1 CCTCCAATTT 0.932019 -75 TTTGTGTACTCCTCCTCTTTCAAACCAAAA 3 29 1 CCTCCTCTTT 0.808376 -52 GCCTACTATCCCTCCTAATTTTTGCTGCCC 4 69 1 CCTCCTAATT 0.806467 -105 TTCTTCACACCATCCAACCAAAACTTAAAA 8 84 1 CATCCAACCA 0.825474 -43 TCAACTCACCTCCAACCTTTTCATACAT 10 31 0 CCTCCAACCT 0.976935 -18 TCTAACGTTTCCTGCAATCAAAATTCTTAT 13 40 1 CCTGCAATCA 0.85305 -66 TTCTAACCCTCCTTTCAAATTTCGTTA 13 89 0 CCTCCTTTCA 0.879251 -17 TAGCTCTAACCCTCCTACCATTCTTCCAAA 24 48 1 CCTCCTACCA 0.976935 -38 ********** Masking position 3 Map Score: 1.08063 Number of sites scoring better than the average of aligned sites = 575 Number in coding regions = 536 Number in noncoding regions = 39 Number of orfs with sites within 600 bp upstream = 34 Fraction of orfs with sites within 600 bp upstream = 0.00546097 Motif number 14 ********** No masking Map Score: -4.45978e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 15 ********** No masking Map Score: -4.45978e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0