AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00330_aful_reg_300.orf -o00330_aful_300.ace -a/home/amcguire/genomes/ORF_aful.txt -z/home/amcguire/genomes/aful.fna -g0.49 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.49 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 AF0645 232 translation initiation factor eIF-5A (eif5A) #2 AF0883 71 argininosuccinate lyase (argH) #3 AF0894 300 arginyl-tRNA synthetase (argS) #4 AF1215 101 cell division protein, putative #5 AF1252 194 oxaloacetate decarboxylase, subunit alpha (oadA) #6 AF1255 27 ornithine carbamoyltransferase (argF) #7 AF1259 36 inosine monophosphate dehydrogenase, putative #8 AF1260 207 phosphoribosylformylglycinamidine synthase I (purQ) #9 AF1261 133 medium-chain acyl-CoA ligase (alkK-4) #10 AF1263 74 iron-sulfur cluster binding protein #11 AF1418 49 glycerol-3-phosphate cytidyltransferase (taqD) #12 AF1419 24 ribose-phosphate pyrophosphokinase (prsA-2) #13 AF1420 216 membrane protein #14 AF1421 49 conserved hypothetical protein #15 AF1422 35 aspartate racemase #16 AF1423 112 conserved hypothetical protein #17 AF1609 59 prolyl-tRNA synthetase (proS) #18 AF1665 147 ornithine cyclodeaminase (arcB) #19 AF2086 41 protease inhibitor, putative #20 AF2089 111 conserved hypothetical protein #21 AF2252 78 argininosuccinate synthetase (argG) #22 AF2334 33 spermidine synthase (speE) Motif number 1 ATCCTGCCAGAACGACTTCTGGAATC 1 3 1 CCGCCACGAC 0.794608 -230 CAGAACGACTTCTGGAATCCGAGAATTACCAGCT 1 18 1 TCGGACGAGA 0.558223 -215 TGCTTTACCTCTGGCCTCACGGGCCAAATCAGGG 1 53 0 CTGCCCGGGC 0.971876 -180 CGAGGGGAGGCCTGTCAAGCGGGCGGCAGCGGTT 3 27 1 CCGTCCGGGC 0.986551 -274 GGCAGCGGTTCCAGGCACCGCAGAGTCCTCGTCC 3 51 1 CCGGCGCAGA 0.783679 -250 GCCATAACCGCCGGCCCTCCGGGACGAGGACTCT 3 72 0 CCGCCCGGGA 0.997416 -229 GACAGCCCCTCCGGGCAGCCCGGCCATAACCGCC 3 94 0 CCGGCCCGGC 0.996353 -207 CGGGCCTGGGCCGTTCCCCCCGGCTAATATGGCG 3 128 0 CCTTCCCGGC 0.839461 -173 GGGTTAGCCTGCTCCCTTCCGGGCCTGGGCCGTT 3 147 0 GCCCCCGGGC 0.906396 -154 GCAGGCTAACCCCGGACGACCGGCGCTTCCGGGG 3 169 1 CCGGACCGGC 0.968301 -132 GCACCTCCTCCCCGCACCCCCGGAAGCGCCGGTC 3 186 0 CCGCACCGGA 0.987408 -115 CTCGGGTCGACCTGCCTTACGGGCGGCTTGAAGC 3 225 0 CCGCCCGGGC 0.99854 -76 AGGAATCAGACCAGCCCCACCAGCTAAAAGAATT 8 87 1 CCGCCCCAGC 0.995212 -121 GAACATCAACGCTGCCGACACGGAAAAAGCTTAA 8 160 1 GCGCCACGGA 0.881291 -48 TAAATTTTTATCGGCCCAACCAGAACAACATCA 16 90 1 TCGCCCCAGA 0.950144 -23 AACAATTTTGCCTGCCCTTCGAGAGCATCTATTG 18 36 1 CCGCCCGAGA 0.990044 -112 TTTAAACCTCTCCGCATGACGGGATTGT 21 61 1 TCGCACGGGA 0.925551 -18 ** *** ***** Masking position 2 Map Score: 29.9322 Number of sites scoring better than the average of aligned sites = 470 Number in coding regions = 430 Number in noncoding regions = 40 Number of orfs with sites within 600 bp upstream = 17 Fraction of orfs with sites within 600 bp upstream = 0.00273049 Motif number 2 TCATCTCCAAAACATAAATACATTTGCGGTAAGAA 2 20 1 AATAATAATT 0.887082 -52 CTTTTCAGTTAAATTGAAAAATCCTCCAGCCAATT 3 269 1 AATAAAATCT 0.70156 -32 CTCAACGCTAAGATTTAATACGCTTTTTATTTAAA 4 77 0 AGTAATAGTT 0.647373 -25 TACTGCCATCAACCTAAATAAACTTTCCTGAAGAA 5 29 1 AATAATAATT 0.886053 -166 AAGCAATATTAAAAACAAAAAATTTTTGTATTTCC 5 89 1 AAAAAAAATT 0.893401 -106 AGACATGGCAAAAGTAAAAATTGTTGACTTAACTC 5 135 1 AATAAAATTT 0.958983 -60 AAATGACGGCAAGCTAAAAACTTTTG 7 2 0 AATAAAATTT 0.958981 -35 TAACGGCATCAATTTGAAAAGAATTCTTTTAGCTG 8 107 0 AATAAAAATT 0.967508 -101 GACACGGAAAAAGCTTAAAAGATTGCGGTTGATTG 8 176 1 AATAAAAATG 0.749625 -32 TAATCTGCTGAAAAACAAAAAAGTTGGAAAATGAA 9 22 0 AAAAAAAATT 0.893401 -112 AAATTCAGGTAGGCATAAAAGTTTT 11 1 0 AGAAAAATTT 0.677456 -49 TTCTGCTTTGAATGTTAAAAAGTTTGCTGTGCTAC 14 18 0 AATAAAAGTT 0.956207 -32 CGCATCACCCAACCTAAAAAATTTTAACCTCAACT 16 25 0 AATAAAATTT 0.958963 -88 GGTAGATAAGAAAGATAAAACAATTTTGCCTGCCC 18 18 1 AAAAAAAATT 0.893414 -130 GGAAAAATTGAATAGAAAAATTTTTCTTACAGCAT 18 72 1 AAGAAAATTT 0.74779 -76 ACTTGACATTAACTTTAATACTTTTCAAGAAGACA 18 116 1 AATAATATTT 0.848 -32 CCTAAACTTTATGATTAAAAAGCTTTGGTTTT 19 8 0 ATTAAAAGTT 0.637165 -34 TTCGATTTCAAGTTTAAAAACGCTTTTCAAAAGGT 20 79 0 AGTAAAAGTT 0.874647 -33 AGATTAAACAAAAGTTAAAAAACTTCCTGGGTTTT 21 19 0 AATAAAAATT 0.967449 -60 ACTTTTGTTTAATCTCAAAAGATTTAAACCTCTCC 21 39 1 AATAAAAATT 0.967508 -40 ** * **** * ** Masking position 8 Map Score: 24.0208 Number of sites scoring better than the average of aligned sites = 155 Number in coding regions = 80 Number in noncoding regions = 75 Number of orfs with sites within 600 bp upstream = 92 Fraction of orfs with sites within 600 bp upstream = 0.0147767 Motif number 3 CCCTGATTTGGCCCGTGAGGCCAGAGGTAAA 1 53 1 GCCCGTAGGC 0.85222 -180 GCTGCCGCCCGCTTGACAGGCCTCCCCTCGG 3 26 0 GCTTGAAGGC 0.602763 -275 AGAGTCCTCGTCCCGGAGGGCCGGCGGTTAT 3 72 1 TCCCGGGGGC 0.991145 -229 TGGCCGGGCTGCCCGGAGGGGCTGTCCGCCA 3 102 1 GCCCGGGGGG 0.972661 -199 AACGGCCCAGGCCCGGAAGGGAGCAGGCTAA 3 147 1 GCCCGGAGGG 0.968077 -154 GACCGGCGCTTCCGGGGGTGCGGGGAGGAGG 3 186 1 TCCGGGGTGC 0.886851 -115 GCTTCAAGCCGCCCGTAAGGCAGGTCGACCC 3 225 1 GCCCGTAGGC 0.85222 -76 TTTTTGTATTTCCCATCAGGCTTGAGACATG 5 111 1 TCCCATAGGC 0.757569 -84 AATTCTTTTAGCTGGTGGGGCTGGTCTGATT 8 90 0 GCTGGTGGGC 0.972652 -118 CAAAGCTTTATCTTGTTAGGCGATTAGTCTA 15 12 1 TCTTGTAGGC 0.894089 -24 TGATGTTGTTCTGGTTGGGCCGATAAAAAT 16 93 0 TCTGGTGGGC 0.963359 -20 CAATAGATGCTCTCGAAGGGCAGGCAAAATT 18 39 0 TCTCGAGGGC 0.954263 -109 ACAATCCCGTCATGCGGAGAGGTTT 21 64 0 TCCCGTATGC 0.934964 -15 ****** **** Masking position 2 Map Score: 20.545 Number of sites scoring better than the average of aligned sites = 262 Number in coding regions = 240 Number in noncoding regions = 22 Number of orfs with sites within 600 bp upstream = 15 Fraction of orfs with sites within 600 bp upstream = 0.00240925 Motif number 4 CCTTTACCGGAATACTGCTTTACCTCTGGCC 1 71 0 AATCTGCTTT 0.761525 -162 CTTGCTGCCTAATTTTGCGTTAATTTAAATT 1 210 0 AATTTGCGTT 0.88101 -23 TGCTGTTTTTAAACTTGCCTTTATCGAGATT 4 28 1 AAATTGCCTT 0.914452 -74 CAACCTAAATAAACTTTCCTGAAGAACGTAA 5 38 1 AAATTTCCTG 0.89341 -157 TTTTGTTTTTAATATTGCTTGCACCTCAAAA 5 78 0 AATTTGCTTG 0.902417 -117 ACCGGTTAAAAATTTCCGGTTAATTAA 6 9 0 AAATTTCCGG 0.766223 -19 AAAAGCTTAAAAGATTGCGGTTGATTGCTTA 8 184 1 AAGTTGCGGT 0.795308 -24 GCAACGCTTCAAGACTTCGTGGATTCGTTTT 13 134 1 AAGCTTCGTG 0.812234 -83 GAATGTTAAAAAGTTTGCTGTGCTACCAATA 14 13 0 AAGTTGCTGT 0.751115 -37 AATGCAATTCTGCTTTGAATGTTAAA 14 34 0 AATCTGCTTT 0.761525 -16 TTTGTATAAAAAACTTTCGTGTCAGCCCAAT 17 29 1 AAATTTCGTG 0.830062 -31 AAGATAAAACAATTTTGCCTGCCCTTCGAGA 18 29 1 AATTTGCCTG 0.953337 -119 TTTTCTATTCAATTTTTCCTTCAATAGATGC 18 60 0 AATTTTCCTT 0.860997 -88 AGTTAATGTCAAGTTTTCTTGAGATGCTGTA 18 99 0 AAGTTTCTTG 0.858161 -49 CGCTTTTCAAAAGGTTGCCTTATAACTATTA 20 63 0 AAGTTGCCTT 0.941111 -49 CAAAAGTTAAAAAACTTCCTGGGTTTTCAGA 21 15 0 AAACTTCCTG 0.823157 -64 *** ******* Masking position 6 Map Score: 14.1534 Number of sites scoring better than the average of aligned sites = 356 Number in coding regions = 306 Number in noncoding regions = 50 Number of orfs with sites within 600 bp upstream = 52 Fraction of orfs with sites within 600 bp upstream = 0.00835207 Motif number 5 GGAGTAATTATAGCCTTTACCGGAATACTG 1 85 0 TAGCCTTTAC 0.742281 -148 TGCGAGCTTCATGCTTTTTCTTCTCAGTCG 1 157 1 ATGCTTTTTC 0.87182 -76 TTTTTATTTAAACCTTTTTCCCAACTTTGC 4 59 0 AACCTTTTTC 0.954233 -43 TTTGAAAGTTTAGGTTTTTCTTTTTTTACT 8 29 1 TAGGTTTTTC 0.904222 -179 GCAATCTTTTAAGCTTTTTCCGTGTCGGCA 8 172 0 AAGCTTTTTC 0.981661 -36 TTTCACCTCATAGCCTTTTCTCCACAAATT 10 53 0 TAGCCTTTTC 0.957748 -22 GACCCTTTTCTTCATCTCCA 11 40 0 GACCCTTTTC 0.83816 -10 AGAGGCTAATAAGGTTTTTCATGAGTTTGA 13 181 0 AAGGTTTTTC 0.954233 -36 CCAAAGCTTTATCTTGTTAGGCG 15 4 1 AAGCTTTATC 0.87182 -32 AAAACCAAAGCTTTTTAATCATAAAGT 19 8 1 AAGCTTTTTA 0.808347 -34 CAAGTTTAAAAACGCTTTTCAAAAGGTTGC 20 76 0 AACGCTTTTC 0.883649 -36 ********** Masking position 6 Map Score: 9.85709 Number of sites scoring better than the average of aligned sites = 542 Number in coding regions = 477 Number in noncoding regions = 65 Number of orfs with sites within 600 bp upstream = 86 Fraction of orfs with sites within 600 bp upstream = 0.013813 Motif number 6 CGCATTTTTAACTCTTCTTCAGAAAAATTTA 1 185 1 ACTCTCTTCA 0.826337 -48 GCTCTGCCATCATCTCCAAAACATAAAT 2 8 1 CATCACTCCA 0.969538 -64 AACAGCAACGCCTCAGCTTGACCG 4 4 0 CCTCACTTGA 0.986179 -98 ACCATCACCTTGATTTGATACTG 5 3 1 CATCACTTGA 0.971868 -192 CTAGTAACGGCATCAATTTGAAAAGAATTCT 8 115 0 CATCATTTGA 0.794148 -93 GACCCTTTTCTTCATCTCCAATCCAAATTC 11 30 0 CTTCACTCCA 0.926453 -20 ATACTCTGTCACTCAGCTTCAAAGCTTCCCG 13 48 1 ACTCACTTCA 0.963705 -169 AAAATTTTAACCTCAACTTCAAGCAAAATCC 16 12 0 CCTCACTTCA 0.991459 -101 ***** ***** Masking position 11 Map Score: 5.24425 Number of sites scoring better than the average of aligned sites = 314 Number in coding regions = 301 Number in noncoding regions = 13 Number of orfs with sites within 600 bp upstream = 15 Fraction of orfs with sites within 600 bp upstream = 0.00240925 Motif number 7 CTTCATGCTTTTTCTTCTCAGTCGCATTTT 1 163 1 TTTCTTCTCA 0.906176 -70 GCTCTGCCATCATCTCCAAAACATAAA 2 8 1 CATCATCTCC 0.820588 -64 TTAATATTGCTTGCACCTCAAAAGATCAAG 5 71 0 TTGCACCTCA 0.936003 -124 CTCATAGCCTTTTCTCCACAAATTATATAA 10 47 0 TTTCTCCACA 0.684265 -28 GCTTTCACCTCATAGCCTTTTC 10 63 0 TTTCACCTCA 0.971441 -12 GACCCTTTTCTTCATCTCCAATCCAAATT 11 31 0 CTTCATCTCC 0.942705 -19 CCTAAAAAATTTTAACCTCAACTTCAAGCA 16 18 0 TTTAACCTCA 0.854655 -95 ATTTTTCTTACAGCATCTCAAGAAAACTTG 18 91 1 CAGCATCTCA 0.734193 -57 CCTTCTCCTCCTAAACTTTAT 19 31 0 CTTCTCCTCC 0.922367 -11 TTAACTTTTGTTTAATCTCAAAAGATTTAA 21 36 1 TTTAATCTCA 0.786658 -43 ********** Masking position 7 Map Score: 5.104 Number of sites scoring better than the average of aligned sites = 1024 Number in coding regions = 942 Number in noncoding regions = 82 Number of orfs with sites within 600 bp upstream = 79 Fraction of orfs with sites within 600 bp upstream = 0.0126887 Motif number 8 CCGTCTGATTTTTGCGAGCTTCATGCTTTTT 1 145 1 TTTGCAGCTT 0.889787 -88 GCTCTGCCATCATCTCCAAAACA 2 3 1 TCTGCATCAT 0.862316 -69 GGAGGGGCTGTCCGCCATATTAGCCGGGGGG 3 116 1 TCCGCATATT 0.929453 -185 TTTTCCCAACTTTGCAATCTCGATAAAGGCA 4 43 0 TTTGCATCTC 0.929453 -59 AATTTTTACTTTTGCCATGTCTCAAGCCTGA 5 126 0 TTTGCATGTC 0.71694 -69 AATTAAAGATCTGCCAGCTTTGAAAGTTTA 8 10 1 TCTGCAGCTT 0.949794 -198 GCGTTGATGTTCTGCACTCTTTAGTGCTAGT 8 141 0 TCTGCCTCTT 0.902748 -67 TAAGCAATCAACCGCAATCTTTTAAGCTTTT 8 184 0 ACCGCATCTT 0.796858 -24 ATCTATAGCATTTGCGATATTGTTATATAAT 10 25 1 TTTGCATATT 0.899769 -50 GGATTCGTTTTCTGCAATATCTCAATATCAA 13 154 1 TCTGCATATC 0.929453 -63 TAAAAGTAATTACGCTATATTAAAGCTTTTA 20 21 1 TACGCATATT 0.630848 -91 ***** ***** Masking position 5 Map Score: 4.44034 Number of sites scoring better than the average of aligned sites = 442 Number in coding regions = 412 Number in noncoding regions = 30 Number of orfs with sites within 600 bp upstream = 27 Fraction of orfs with sites within 600 bp upstream = 0.00433665 Motif number 9 TGACAGGCCTCCCCTCGGCTTCGGCCCCCG 3 14 0 CCCCTCGGCT 0.995487 -287 CTGGGCCGTTCCCCCCGGCTAATATGGCGG 3 127 0 CCCCCCGGCT 0.995793 -174 AAGGTGGGCACGCCTCGGGTCGACCTGCCT 3 242 0 CGCCTCGGGT 0.977249 -59 AAAACAGCAACGCCTCAGCTTGACCG 4 7 0 CGCCTCAGCT 0.986376 -95 TCAGACCAGCCCCACCAGCTAAAAGAATTC 8 92 1 CCCACCAGCT 0.956337 -116 ********** Masking position 10 Map Score: 5.00478 Number of sites scoring better than the average of aligned sites = 25 Number in coding regions = 23 Number in noncoding regions = 2 Number of orfs with sites within 600 bp upstream = 2 Fraction of orfs with sites within 600 bp upstream = 0.000321234 Motif number 10 GGCCGAAGCCGAGGGGAGGCCTGTCAAGCG 3 18 1 GAGGGGAGGC 0.975015 -283 CCTCGTCCCGGAGGGCCGGCGGTTATGGCC 3 77 1 GAGGGCCGGC 0.882633 -224 GGGGTGCGGGGAGGAGGTGCCTGGGGCTTC 3 200 1 GAGGAGGTGC 0.948257 -101 AGGTCGACCCGAGGCGTGCCCACCTTTTCA 3 246 1 GAGGCGTGCC 0.952914 -55 CGGTCAAGCTGAGGCGTTGCTGTTTTTAAA 4 11 1 GAGGCGTTGC 0.978538 -91 CATCAGGCTTGAGACATGGCAAAAGTAAAA 5 124 1 GAGACATGGC 0.914692 -71 ATAATTTGTGGAGAAAAGGCTATGAGGTGA 10 51 1 GAGAAAAGGC 0.735622 -24 ATCAAAAAAAGAGGAAGGGCTT 12 3 0 GAGGAAGGGC 0.95625 -22 ACGAAGTCTTGAAGCGTTGCCAGCAGAATA 13 124 0 GAAGCGTTGC 0.817128 -93 ********** Masking position 2 Map Score: 3.84814 Number of sites scoring better than the average of aligned sites = 462 Number in coding regions = 441 Number in noncoding regions = 21 Number of orfs with sites within 600 bp upstream = 17 Fraction of orfs with sites within 600 bp upstream = 0.00273049 Motif number 11 TCTCGATAAAGGCAAGTTTAAAAACAGCAA 4 27 0 GGCAAGTTTA 0.948996 -75 ACGTTCTTCAGGAAAGTTTATTTAGGTTGA 5 37 0 GGAAAGTTTA 0.949955 -158 CTGCCAGCTTTGAAAGTTTAGGTTTTTCTT 8 21 1 TGAAAGTTTA 0.958117 -187 TTAAGAATCCTGAAAGTTTATTTTCAGTTA 9 57 0 TGAAAGTTTA 0.958117 -77 TCACCAATCAATCAAGTTTAATCGACATAA 9 108 0 ATCAAGTTTA 0.883498 -26 TTGAAAAGTATTAAAGTTAATGTCAAGTTT 18 114 0 TTAAAGTTAA 0.719606 -34 CTTTTTAATCATAAAGTTTAGGAGGAGAAG 19 21 1 ATAAAGTTTA 0.885538 -21 GGATTTCGATTTCAAGTTTAAAAACGCTTT 20 88 0 TTCAAGTTTA 0.933985 -24 ********** Masking position 5 Map Score: 6.95296 Number of sites scoring better than the average of aligned sites = 53 Number in coding regions = 36 Number in noncoding regions = 17 Number of orfs with sites within 600 bp upstream = 26 Fraction of orfs with sites within 600 bp upstream = 0.00417604 Motif number 12 CGAGGGGAGGCCTGTCAAGCGGGCGGCAGC 3 27 1 CCTGTCAAGC 0.881838 -274 ATTTGATACTGCCATCAACCTAAATAAACT 5 23 1 GCCATCAACC 0.958387 -172 TTTTGTATTTCCCATCAGGCTTGAGACATG 5 112 1 CCCATCAGGC 0.931311 -83 CGGTAAGCAATCAACCGCAATCTTTT 8 192 0 GCAATCAACC 0.936089 -16 AGTTTTTCACCAATCAATCAAGTTTAATC 9 115 0 CCAATCAATC 0.962907 -19 AGAACACAATCAATCCATTTTGTAT 17 6 1 ACAATCAATC 0.832618 -54 GGTTTATAATCCCGTCAATCCTTTATTAGC 22 12 1 CCCGTCAATC 0.964872 -22 ********** Masking position 7 Map Score: 1.10151 Number of sites scoring better than the average of aligned sites = 139 Number in coding regions = 126 Number in noncoding regions = 13 Number of orfs with sites within 600 bp upstream = 13 Fraction of orfs with sites within 600 bp upstream = 0.00208802 Motif number 13 TGCCGCCCGCTTGACAGGCCTCCCCTCGGC 3 25 0 TTGACAGGCC 0.955446 -276 AGCCGCCCGTAAGGCAGGTCGACCCGAGGC 3 231 1 AAGGCAGGTC 0.943493 -70 TACTTTTCCCTAGACAGGACGATCTTAGAG 8 55 1 TAGACAGGAC 0.978547 -153 TAAATACTTCAAGACAGGCCTTTTAGCGGT 16 61 1 AAGACAGGCC 0.990205 -52 ACTTTTCAAGAAGACAGGACATC 18 135 1 AAGACAGGAC 0.98493 -13 ********** Masking position 6 Map Score: 3.68158 Number of sites scoring better than the average of aligned sites = 18 Number in coding regions = 13 Number in noncoding regions = 5 Number of orfs with sites within 600 bp upstream = 7 Fraction of orfs with sites within 600 bp upstream = 0.00112432 Motif number 14 GGGCCAAATCAGGGCAGCTGGTAATTCTCG 1 37 0 AGGGCAGCTG 0.88051 -196 TCGCAAAAATCAGACGGCTGGTTCTGTTCT 1 132 0 CAGACGGCTG 0.916069 -101 GCCTGTCAAGCGGGCGGCAGCGGTTCCAGG 3 36 1 CGGGCGGCAG 0.937035 -265 GTCCTCGTCCCGGAGGGCCGGCGGTTATGG 3 75 1 CGGAGGGCCG 0.938802 -226 ACAGCCCCTCCGGGCAGCCCGGCCATAACC 3 97 0 CGGGCAGCCC 0.984824 -204 GCTAATATGGCGGACAGCCCCTCCGGGCAG 3 110 0 CGGACAGCCC 0.977511 -191 AGGCTAACCCCGGACGACCGGCGCTTCCGG 3 171 1 CGGACGACCG 0.801231 -130 CTTGAAGCCCCAGGCACCTCCTCCCCGCAC 3 203 0 CAGGCACCTC 0.695784 -98 ACCTGCCTTACGGGCGGCTTGAAGCCCCAG 3 220 0 CGGGCGGCTT 0.91433 -81 CTCTTAGAGACGGACACCAGTCCCTGCTTG 5 167 1 CGGACACCAG 0.894634 -28 ********** Masking position 8 Map Score: 9.78401 Number of sites scoring better than the average of aligned sites = 158 Number in coding regions = 145 Number in noncoding regions = 13 Number of orfs with sites within 600 bp upstream = 9 Fraction of orfs with sites within 600 bp upstream = 0.00144555 Motif number 15 ********** No masking Map Score: 7.48502e-13 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0