AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00790_aful_reg_300.orf -o00790_aful_300.ace -a/home/amcguire/genomes/ORF_aful.txt -z/home/amcguire/genomes/aful.fna -g0.49 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.49 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 AF0003 300 A. fulgidus predicted coding region AF0003 #2 AF0004 266 RNase L inhibitor #3 AF0005 38 A. fulgidus predicted coding region AF0005 #4 AF0006 104 corrinoid methyltransferase protein (mtaC-1) #5 AF0008 73 oxalate/formate antiporter (oxlT-1) #6 AF0714 73 N5,N10-methylenetetrahydromethanopterin dehydrogenase (mtd) #7 AF1232 63 conserved hypothetical protein #8 AF1415 203 chloride channel, putative #9 AF1418 49 glycerol-3-phosphate cytidyltransferase (taqD) #10 AF1419 24 ribose-phosphate pyrophosphokinase (prsA-2) #11 AF1420 216 membrane protein #12 AF1421 49 conserved hypothetical protein #13 AF1422 35 aspartate racemase #14 AF1423 112 conserved hypothetical protein #15 AF1935 49 N5,N10-methenyltetrahydromethanopterin cyclohydrolase (mch) #16 AF1936 35 conserved hypothetical protein #17 AF1937 112 cell division inhibitor (minD-2) #18 AF2073 49 formylmethanofuran:tetrahydromethanopterin formyltransferase (ftr-1) #19 AF2075 61 hydroxyethylthiazole kinase (thiM) #20 AF2079 33 A. fulgidus predicted coding region AF2079 #21 AF2081 111 A. fulgidus predicted coding region AF2081 #22 AF2082 90 A. fulgidus predicted coding region AF2082 #23 AF2083 121 conserved hypothetical protein #24 AF2086 41 protease inhibitor, putative #25 AF2089 111 conserved hypothetical protein #26 AF2207 300 formylmethanofuran:tetrahydromethanopterin formyltransferase (ftr-2) Motif number 1 AATGTCTCGCTTTCAATCCCATTT 1 2 0 TTTAATCCAT 0.969961 -299 TCCTGACGGGTTGAAATCAGACCAAAATGGGAT 1 55 1 TTGAATCGAC 0.966015 -246 GTCGTCTGCCTTTCAATCCCATTTTGGTCTGAT 1 70 0 TTTAATCCAT 0.969961 -231 CAAGGAACAGTTGAAATCAGACCAAAATGGGAT 1 123 1 TTGAATCGAC 0.966015 -178 ATGTTCTTACTTTCAATCCCATTTTGGTCTGAT 1 138 0 TTTAATCCAT 0.969961 -163 AGCTCCCAAGTTGAAATCAGACCAAAATGGGAT 1 196 1 TTGAATCGAC 0.966015 -105 CGCCATTGCCTTTCAATCCCATTTTGGTCTGAT 1 211 0 TTTAATCCAT 0.969961 -90 CCGGCGTTTTTTGAAATCAGACTAAAGTGGGAT 2 66 1 TTGAATCGAT 0.969542 -201 AACATTTCCTTTTTAATCTCATTGCTGATATGG 6 15 0 TTTAATCCAT 0.969961 -59 TCCGGGAAGCTTTGAAGCTGAGTGACAGAGTAT 11 48 0 TTTAAGCGAT 0.949785 -169 TCTTGAAGCGTTGCCAGCAGAATAACTTGACAA 11 115 0 TTGCAGCGAT 0.751395 -102 AGTATTGGTAGCACAGCAAACTTTTTA 12 5 1 TTGTAGCCAC 0.699478 -45 CTTTTTAACATTCAAAGCAGAATTGCATT 12 31 1 TTCAAGCGAT 0.797757 -19 ACCTAAAAAATTTTAACCTCAACTTCAAGCAAA 14 16 0 TTTAACCCAC 0.831929 -97 CTTTCAAGCACAGTCGCAGAATTT 18 2 1 TTTAAGCCAT 0.960279 -48 GTTTTTAAACTTGAAATCGAAATCCGGCT 25 93 1 TTGAATCAAT 0.780446 -19 AATAAAAAGATTTAAATCGCTTCTACCAAACAA 26 263 1 TTTAATCCTC 0.698422 -38 *** **** ** * Masking position 6 Map Score: 22.0308 Number of sites scoring better than the average of aligned sites = 357 Number in coding regions = 152 Number in noncoding regions = 205 Number of orfs with sites within 600 bp upstream = 39 Fraction of orfs with sites within 600 bp upstream = 0.00626405 Motif number 2 GCCTTTCAATCCCATTTTGGTCTGATTTCAACC 1 63 0 CCCATTTGCT 0.981937 -238 TACTTTCAATCCCATTTTGGTCTGATTTCAACT 1 131 0 CCCATTTGCT 0.981937 -170 GCCTTTCAATCCCATTTTGGTCTGATTTCAACT 1 204 0 CCCATTTGCT 0.981937 -97 TTTACGTAATCCCACTTTAGTCTGATTTCAAAA 2 74 0 CCCATTTGCT 0.981937 -193 TCTCGTCGGTCTGAGTTTTGTTTCCTTGTCACA 2 122 0 CTGATTTGTT 0.986725 -145 ACAAAATTATCTGACTTTTGATTAAAATAACTT 4 18 0 CTGATTTGTT 0.986725 -87 TTATGCCTACCTGAATTTGGATTGGAGATGAAG 9 18 1 CTGATTTGTT 0.986725 -32 AATTTTTACCCTGATTTTGGCTTCTGATTTTAT 21 19 1 CTGATTTGTT 0.986725 -93 ATTTTGGCTTCTGATTTTATTTTCAAATATTAT 21 32 1 CTGATTTTTT 0.854153 -80 AGCCGGATTTCGATTTCAAGTTTAA 25 97 0 CCGGTTTGTT 0.954132 -15 ACTATCACCTGCTTTTTGTTTGGTAGAAGCG 26 280 0 CTGCTTTGTT 0.939397 -21 **** *** * ** Masking position 7 Map Score: 17.2801 Number of sites scoring better than the average of aligned sites = 151 Number in coding regions = 56 Number in noncoding regions = 95 Number of orfs with sites within 600 bp upstream = 12 Fraction of orfs with sites within 600 bp upstream = 0.0019274 Motif number 3 AGGAAAAAGATTTTCTAATTTTTTTATGAAT 1 273 1 TTTTTAATTT 0.853057 -28 TTTTTACTTTTCCTCTTTTTTCTGAACACC 2 10 0 TCCTTTTTTT 0.746586 -257 GCAGCAATTGTTTTTTACTTTTCCTCTTTTT 2 21 0 TTTTTACTTT 0.713976 -246 AGAAGGCCTATTTTCTAATTTGGAGGTGTTT 4 82 1 TTTTTAATTT 0.853057 -23 TTTTTTCTTATTTATGAACCAGT 5 3 1 TTTTTTATTT 0.947168 -71 TTTTTGTTTTTTATTTCATAAA 8 2 1 TTTTTTTTTT 0.940372 -202 ACTTTCAAAGTTTACTTCTTTGCTCCAAAGC 8 43 1 TTTATTCTTT 0.713976 -161 GAAATGGCAATTTTGTAAGTTGGTGACAGAA 8 139 1 TTTTTAAGTT 0.575353 -65 AAGCCCTTCCTCTTTTTTTGATTC 10 8 1 TCCTTTTTTT 0.746586 -17 CTTATTAGCCTCTTGTTATTTATTTGCGT 11 198 1 TCTTTTATTT 0.90204 -19 ACATTGGAGTTTTTATTTTTTATCTT 15 6 0 TTTTTTTTTT 0.940372 -44 ATACAAAAAATTTAATTATTTTAAAAATAAG 17 83 1 TTTATTATTT 0.853057 -30 TTTTCAATTTTTTTGCACAATCA 19 3 1 TTCATTTTTT 0.650031 -59 GCTCTCAAATTTAATTTTTTATGAGGAAAG 20 10 1 TTTATTTTTT 0.836247 -24 GCGTATCTGCTTTTTTTATTTATTCACGAAT 23 31 1 TTTTTTATTT 0.947168 -91 AATTTGAGGCTTTTGTTTGTTGAGTAACGTG 26 53 1 TTTTTTTGTT 0.786354 -248 GCGATTTAAATCTTTTTATTTTTGCAAGCTG 26 252 0 TCTTTTATTT 0.90204 -49 **** ****** Masking position 6 Map Score: 14.5248 Number of sites scoring better than the average of aligned sites = 160 Number in coding regions = 67 Number in noncoding regions = 93 Number of orfs with sites within 600 bp upstream = 89 Fraction of orfs with sites within 600 bp upstream = 0.0142949 Motif number 4 GCAAGAGGAAAAAGATTTTCTAATTTTTTT 1 268 1 AAAGATTTTC 0.931826 -33 CGCCGGCAAAAACGATTATCGCAGCAATTG 2 42 0 AACGATTATC 0.423779 -225 AAAACCGCCTAAAGCTCTTCTCCAGCAAAT 2 159 1 AAAGCTCTTC 0.816722 -108 ATTTATTCATTAAGCTTTAACCGTTTAAAA 2 199 1 TAAGCTTTAA 0.458518 -68 ACAATCCTTATAAGATTTTCTGAT 3 5 0 TAAGATTTTC 0.604691 -34 AAGGATTGTCAAAAATTTTTTAC 3 26 1 AAAAATTTTT 0.412415 -13 TCTAAAGATAAAAGCTGTTATGAATCAGTT 4 55 0 AAAGCTGTTA 0.62493 -50 CCCAGATACGAAAGATTATATATACCTTTC 7 29 1 AAAGATTATA 0.740632 -35 TGATAAATACAAAGCTTTATCCTCCTACTG 8 91 1 AAAGCTTTAT 0.765537 -113 AAAACTTTTATGCCTACCTG 9 1 1 AAAACTTTTA 0.852188 -49 CCAAAGCTTTATCTTGTTAGGC 13 3 1 AAAGCTTTAT 0.765537 -33 ACCCAACCTAAAAAATTTTAACCTCAACTT 14 24 0 AAAAATTTTA 0.682724 -89 TTGGGCCGATAAAAATTTACCGCTAAAAGG 14 79 0 AAAAATTTAC 0.683983 -34 AGGGATTTAAAATGCTTTTCAGATGATTTC 17 27 1 AATGCTTTTC 0.620484 -86 CAGCAATACAAAAAATTTAATTATTTTAAA 17 78 1 AAAAATTTAA 0.59712 -35 TAGTATCATGAAAACTTATAAC 18 38 1 AAAACTTATA 0.62884 -12 TTTCCTCATAAAAAATTAAATTTGAGAGC 20 10 0 AAAAATTAAA 0.301618 -24 AAAACCAAAGCTTTTTAATCATAAAG 24 7 1 AAAGCTTTTT 0.876481 -35 ACGCTATATTAAAGCTTTTAGCTAATGACC 25 32 1 AAAGCTTTTA 0.945407 -80 CAAGTTTAAAAACGCTTTTCAAAAGGTTGC 25 76 0 AACGCTTTTC 0.816836 -36 AGAGAAAGCTCATCCTCAAGCCTC 26 5 1 AAAGCTCATC 0.563944 -296 TTCAATCTTTAAAAATTTTCCAGCTTGCAA 26 232 1 AAAAATTTTC 0.812539 -69 GCAAAAATAAAAAGATTTAAATCGCTTCTA 26 258 1 AAAGATTTAA 0.815965 -43 ********** Masking position 6 Map Score: 13.6688 Number of sites scoring better than the average of aligned sites = 1048 Number in coding regions = 799 Number in noncoding regions = 249 Number of orfs with sites within 600 bp upstream = 239 Fraction of orfs with sites within 600 bp upstream = 0.0383874 Motif number 5 GATAATCGTTTTTGCCGGCGTTTTTTGAAATC 2 52 1 TTTGCCGGGT 0.914782 -215 TGGTGGTGGATTTGCTGGAGAAGAGCTTTAGG 2 166 0 TTTGCTGGGA 0.957484 -101 AATGAATAAATTTGGTGGTGGATTTGCTGGAG 2 178 0 TTTGGTGGGA 0.977657 -89 TATTTTCTAATTTGGAGGTGTTTAG 4 90 1 TTTGGAGGGT 0.982752 -15 TCATCTCTGCTTAAGAGGGGATTCGCG 5 57 1 TTAAGAGGGT 0.700185 -17 GCTTCGTTTTTGCTGGGGGAGTGATGATAT 8 184 0 TTTGCTGGGA 0.957537 -20 GTTAGTGGTCTTTTGAGGTGGTAAA 15 35 1 TTTTGAGGGT 0.928733 -15 AATCATCGCATTTTGAGGCGTATCTGCTTTTT 23 14 1 TTTTGAGGGA 0.941368 -108 ATCATAAAGTTTAGGAGGAGAAGG 24 28 1 TTAGGAGGGA 0.956862 -14 ******** * * Masking position 2 Map Score: 6.88349 Number of sites scoring better than the average of aligned sites = 139 Number in coding regions = 120 Number in noncoding regions = 19 Number of orfs with sites within 600 bp upstream = 15 Fraction of orfs with sites within 600 bp upstream = 0.00240925 Motif number 6 GCGGTTTGGTATTTAAGGTTTGGGCGTTTGGG 2 232 0 ATTAAGGTTG 0.895268 -35 TCAGAAAATCTTATAAGGATTGTCAAAAATTT 3 12 1 TTTAAGGTTG 0.960069 -27 AACAAGAGGCTAATAAGGTTTTTCATGAGTTT 11 183 0 TATAAGGTTT 0.55763 -34 GCTTTGAATGTTAAAAAGTTTGCTGTGCTACC 12 17 0 TTAAAAGTTG 0.94566 -33 AATTAGGGATTTAAAATGCTTTTCAGATGATT 17 23 1 TTAAATGTTT 0.660249 -90 AACTTTATGATTAAAAAGCTTTGGTTTT 24 7 0 TTAAAAGTTT 0.887352 -35 AAAAACGCTTTTCAAAAGGTTGCCTTATAACT 25 67 0 TTAAAAGTTG 0.94566 -45 CTCAAATTCTATCTAAGGCTCGGAGTGAGGCT 26 29 0 ATTAAGGTCG 0.594724 -272 ATGAGCAAGGTTGAAAGGCTTGCGGTGAGATA 26 93 0 TTAAAGGTTG 0.970674 -208 GAGAGATAACTTCAAAGGATTTTGAAAGCATG 26 122 0 TTAAAGGTTT 0.93743 -179 GCTGGAAAATTTTTAAAGATTGAAGTGATTTA 26 224 0 TTTAAAGTTG 0.926693 -77 GCTTGCAAAAATAAAAAGATTTAAATCGCTTC 26 254 1 ATAAAAGTTT 0.736883 -47 ** ***** *** Masking position 6 Map Score: 9.02324 Number of sites scoring better than the average of aligned sites = 169 Number in coding regions = 120 Number in noncoding regions = 49 Number of orfs with sites within 600 bp upstream = 58 Fraction of orfs with sites within 600 bp upstream = 0.00931577 Motif number 7 ACGTACACTACTGGGGCGTTGTCAAGGAAC 1 101 1 CTGGGGCGTT 0.69357 -200 GGAGAAGAGCTTTAGGCGGTTTTAAACTCT 2 152 0 TTTAGGCGGT 0.703054 -115 GTATTTAAGGTTTGGGCGTTTGGGGATTTT 2 226 0 TTTGGGCGTT 0.641656 -41 TTTTCTAATTTGGAGGTGTTTAG 4 92 1 TGGAGGTGTT 0.745449 -13 ACGGTGTCAATTGAAGCTTTGGAGCAAAGA 8 59 0 TTGAAGCTTT 0.910652 -145 CCGGGAAGCTTTGAAGCTGAGTGACAGAGT 11 50 0 TTGAAGCTGA 0.605069 -167 CCACGAAGTCTTGAAGCGTTGCCAGCAGAA 11 126 0 TTGAAGCGTT 0.95572 -91 TTGCTTGAAGTTGAGGTTAAAATTTTTTAG 14 17 1 TTGAGGTTAA 0.493503 -96 AAGGCCTGTCTTGAAGTATTTAGCGCATCA 14 53 0 TTGAAGTATT 0.536507 -60 ACCACTAACATTGGAGTTTTTATTTTTTAT 15 14 0 TTGGAGTTTT 0.70215 -36 TAGTGGTCTTTTGAGGTGGTAAA 15 37 1 TTGAGGTGGT 0.923468 -13 TCATCGCATTTTGAGGCGTATCTGCTTTTT 23 16 1 TTGAGGCGTA 0.91386 -106 TAGATAGAATTTGAGGCTTTTGTTTGTTGA 26 46 1 TTGAGGCTTT 0.949061 -255 TCAAAATCCTTTGAAGTTATCTCTCTGATG 26 129 1 TTGAAGTTAT 0.664688 -172 TTTTTAAAGATTGAAGTGATTTAACTTTGT 26 217 0 TTGAAGTGAT 0.807614 -84 ********** Masking position 6 Map Score: 6.17435 Number of sites scoring better than the average of aligned sites = 1084 Number in coding regions = 1005 Number in noncoding regions = 79 Number of orfs with sites within 600 bp upstream = 71 Fraction of orfs with sites within 600 bp upstream = 0.0114038 Motif number 8 TTGTGTTAATGTCTCGCTTTCAATCCCATTT 1 10 0 GTCGCTTTCA 0.985621 -291 AGTGTACGTCGTCTGCCTTTCAATCCCATTTT 1 78 0 GTCCCTTTCA 0.972846 -223 TTATGAGATGTTCTTACTTTCAATCCCATTTT 1 146 0 TTCACTTTCA 0.8836 -155 TTTTCCTCTTGCCACGCTTGCCACCTATGCAA 1 248 0 GCCGCTTGCC 0.930562 -53 TTGTTTCCTTGTCACACTTTCCACAAATAAAT 2 106 0 GTCACTTTCC 0.941936 -161 ATAAAACTCAGCCCAACTTTCAAAGTTTACTT 8 28 1 GCCACTTTCA 0.964758 -176 GTATCTCACCGCAAGCCTTTCAACCTTGCTCA 26 92 1 GCACCTTTCA 0.743399 -209 TTCAACCTTGCTCATGCTTTCAAAATCCTTTG 26 110 1 CTCGCTTTCA 0.929466 -191 TTTAAAAATTTTCCAGCTTGCAAAAATAAAAA 26 239 1 TTCGCTTGCA 0.884345 -62 *** ******* Masking position 8 Map Score: 3.65889 Number of sites scoring better than the average of aligned sites = 167 Number in coding regions = 152 Number in noncoding regions = 15 Number of orfs with sites within 600 bp upstream = 14 Fraction of orfs with sites within 600 bp upstream = 0.00224863 Motif number 9 GATAAAAGCTGTTATGAATCAGTTCATAACAAAAT 4 44 0 GTATAACATC 0.892118 -61 TTTTTTCTTATTTATGAACCAGTTCATAACAGCCT 5 11 1 TTATAACATC 0.964135 -63 CATAACAGCCTTTATTTAGCACTCATCTCTGCTTA 5 35 1 TTATTACATA 0.889079 -39 TATGCTTCAGTTTATTTAACATTTCCTTTTTAATC 6 30 0 TTATTACATC 0.98407 -44 GATAAAGCTTTGTATTTATCAATACGGTGTCAATT 8 77 0 TTATTACATC 0.984075 -127 TCCCGGATAGTCTATTTCACACTCCATCAGGGCTA 11 74 1 TTATTCCATC 0.950036 -143 TTTCAAATATTATATATAACATTTCGACCAATATT 21 52 1 TTATTACATC 0.98407 -60 * *** ** ** * * Masking position 11 Map Score: 2.80015 Number of sites scoring better than the average of aligned sites = 5 Number in coding regions = 1 Number in noncoding regions = 4 Number of orfs with sites within 600 bp upstream = 5 Fraction of orfs with sites within 600 bp upstream = 0.000803084 Motif number 10 AATCTACATTCATAAAAAAATTAGAAAA 1 283 0 TTCATAAAAA 0.951597 -18 GGTGTTCAGAAAAAAGAGGAAAAG 2 5 1 TTCAGAAAAA 0.839337 -262 TTAGTCTGATTTCAAAAAACGCCGGCAAAA 2 61 0 TTCAAAAAAC 0.703431 -206 TATGAATCAGTTCATAACAAAATTATCTGA 4 37 0 TTCATAACAA 0.94192 -68 TATGAACTGATTCATAACAGCTTTTATCTT 4 51 1 TTCATAACAG 0.916083 -54 TATGAACTGGTTCATAAATAAGAAAAAA 5 9 0 TTCATAAATA 0.756136 -65 TATGAACCAGTTCATAACAGCCTTTATTTA 5 23 1 TTCATAACAG 0.916083 -51 TGTTTTTTATTTCATAAAACTCAGCCCAAC 8 15 1 TTCATAAAAC 0.929752 -189 TTACTTTCCTCATAAAAAATTAAATTTG 20 16 0 CTCATAAAAA 0.821274 -18 ********** Masking position 6 Map Score: 5.52896 Number of sites scoring better than the average of aligned sites = 42 Number in coding regions = 35 Number in noncoding regions = 7 Number of orfs with sites within 600 bp upstream = 7 Fraction of orfs with sites within 600 bp upstream = 0.00112432 Motif number 11 TTTCAACCCGTCAGGACATGCCCAATAAATT 1 40 0 TCAGACATGC 0.846287 -261 ATCTTTTTCCTCTTGCCACGCTTGCCACCTA 1 253 0 TCTGCCACGC 0.848347 -48 GGTTTTAAACTCTCGTCGGTCTGAGTTTTGT 2 134 0 TCTGTCGGTC 0.88322 -133 TGGTTCTCGATGGGCGGTTTGGTAT 2 252 0 TCTGATGGGC 0.929959 -15 TCGGAAAATCTCACGATACTCTGTCACTCAG 11 33 1 TCAGATACTC 0.830262 -184 ATTCGTTTTGTCAAGTTATTCTGCTGGCAAC 11 108 1 TCAGTTATTC 0.727864 -109 CAAAGCTTTATCTTGTTAGGCGATTAGTCTA 13 12 1 TCTGTTAGGC 0.958289 -24 GCTAAATACTTCAAGACAGGCCTTTTAGCGG 14 59 1 TCAGACAGGC 0.952829 -54 TGATGTTGTTCTGGTTGGGCCGATAAAAAT 14 93 0 TCTGTTGGGC 0.94239 -20 TACAACATTATCACGTTACTCAACAAACAAA 26 64 0 TCAGTTACTC 0.857678 -237 *** ******* Masking position 1 Map Score: 2.87554 Number of sites scoring better than the average of aligned sites = 117 Number in coding regions = 109 Number in noncoding regions = 8 Number of orfs with sites within 600 bp upstream = 6 Fraction of orfs with sites within 600 bp upstream = 0.000963701 Motif number 12 GTGGTGGATTTGCTGGAGAAGAGCTTTAGG 2 166 0 TGCTGGAGAA 0.955258 -101 TGAATAAATTTGGTGGTGGATTTGCTGGAG 2 178 0 TGGTGGTGGA 0.954776 -89 GCTTCGTTTTTGCTGGGGGAGTGATGATAT 8 184 0 TGCTGGGGGA 0.981786 -20 GAAGGCTGGTGGAATTAGGGATT 17 4 1 GGCTGGTGGA 0.987068 -109 TTTTTTGTATTGCTGCTGAACTGCCATAAA 17 63 0 TGCTGCTGAA 0.876179 -50 CTCGGAGTGAGGCTTGAGGATGAGCTTTCT 26 13 0 GGCTTGAGGA 0.891791 -288 ********** Masking position 4 Map Score: 1.40669 Number of sites scoring better than the average of aligned sites = 251 Number in coding regions = 240 Number in noncoding regions = 11 Number of orfs with sites within 600 bp upstream = 10 Fraction of orfs with sites within 600 bp upstream = 0.00160617 Motif number 13 ACGACGTACACTACTGGGGCGTTGTCAAGG 1 98 1 CTACTGGGGC 0.953055 -203 AAGTAAAAAACAATTGCTGCGATAATCGTT 2 32 1 CAATTGCTGC 0.810266 -235 TTTTATCACCTGCTGGCTGTATGCTT 6 58 0 CACCTGCTGG 0.930093 -16 CTTTATCCTCCTACTGCTGGCAGCACAAAA 8 105 1 CTACTGCTGG 0.98255 -99 TGTCCAAATTCAACTGCGGGCTCGGAAAAT 11 12 1 CAACTGCGGG 0.988926 -205 CGAAGAATGGCTACTGAGGCAAATCA 22 7 0 CTACTGAGGC 0.931962 -84 CATAGTGAAACTACTGCGTGAGAATATTTA 22 44 0 CTACTGCGTG 0.937828 -47 ********** Masking position 5 Map Score: 3.06046 Number of sites scoring better than the average of aligned sites = 185 Number in coding regions = 167 Number in noncoding regions = 18 Number of orfs with sites within 600 bp upstream = 12 Fraction of orfs with sites within 600 bp upstream = 0.0019274 Motif number 14 ATTTCAACTGTTCCTTGACAACGCCCCAGT 1 110 0 TTCCTTGACA 0.970582 -191 TGAGTTTTGTTTCCTTGTCACACTTTCCAC 2 114 0 TTCCTTGTCA 0.970582 -153 AAAGTTCTTAATCCTTGACGCAACTTCAAT 19 41 1 ATCCTTGACG 0.95283 -21 TCGACCAATATTCCTTGTCGGCAGAATGCC 21 75 1 TTCCTTGTCG 0.980783 -37 ********** Masking position 5 Map Score: 0.887789 Number of sites scoring better than the average of aligned sites = 17 Number in coding regions = 16 Number in noncoding regions = 1 Number of orfs with sites within 600 bp upstream = 1 Fraction of orfs with sites within 600 bp upstream = 0.000160617 Motif number 15 ********** No masking Map Score: 7.27128e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0