AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i03010_aful_reg_300.orf -o03010_aful_300.ace -a/home/amcguire/genomes/ORF_aful.txt -z/home/amcguire/genomes/aful.fna -g0.49 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.49 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: AF0933 22 branched-chain amino acid aminotransferase (ilvE) AF0938 21 SSU ribosomal protein S10P (rps10P) Input sequences: #1 AF0057 38 LSU ribosomal protein L37AE (rpl37AE) #2 AF0059 97 A. fulgidus predicted coding region AF0059 #3 AF0508 291 ethylene-inducible protein #4 AF0511 32 SSU ribosomal protein S6E (rps6E) #5 AF0535 122 cell division protein (ftsZ-1) #6 AF0764 138 LSU ribosomal protein L7AE (rpl7AE) #7 AF0875 300 snRNP, putative #8 AF0911 24 SSU ribosomal protein S17E (rps17E) #9 AF0912 51 A. fulgidus predicted coding region AF0912 #10 AF0913 144 A. fulgidus predicted coding region AF0913 #11 AF0932 41 conserved hypothetical protein #12 AF0937 57 translation elongation factor EF-1, subunit alpha (tuf) #13 AF1117 62 DNA-directed RNA polymerase, subunit E' (rpoE1) #14 AF1118 111 A. fulgidus predicted coding region AF1118 #15 AF1127 213 LSU ribosomal protein L18E (rpl18E) #16 AF1131 75 DNA-directed RNA polymerase, subunit K (rpoK) #17 AF1132 108 enolase (eno) #18 AF1332 70 A. fulgidus predicted coding region AF1332 #19 AF1430 73 LSU ribosomal protein L40E (rpl40E) #20 AF1490 166 LSU ribosomal protein L1P (rpl1P) #21 AF1529 197 LSU ribosomal protein L21E (rpl21E) #22 AF1886 32 DNA-directed RNA polymerase, subunit B'' (rpoB2) #23 AF1926 57 conserved hypothetical protein #24 AF1927 142 conserved hypothetical protein #25 AF2070 63 conserved hypothetical protein #26 AF2071 60 N-acetyl-gamma-glutamyl-phosphate reductase (argC) #27 AF2152 89 SSU ribosomal protein S8E (rps8E) #28 AF2285 104 SSU ribosomal protein S13P (rps13P) #29 AF2287 80 carotenoid biosynthetic gene ERWCRTS, putative #30 AF2289 216 mevalonate kinase (mvk) #31 AF2320 52 SSU ribosomal protein S3AE (rps3AE) Motif number 1 TGGAAAACGTTTAAATGCAATAAGA 1 5 1 AAACTTTAAA 0.955718 -34 TCATTTTCACAAAATTTTTTAGTTTGCAAGC 3 195 0 AAAATTTTTA 0.869221 -97 AGTGTTACCAAAACTTTTAAAACTGCACGGG 6 69 1 AAACTTTAAA 0.955718 -70 CCATCCGAAGAAACTTTTATAGGGAATCATG 7 46 0 AAACTTTATA 0.935771 -255 CACAAGTCGAAAACATTTTTAACCCTGAAGC 7 181 0 AAACTTTTTA 0.923032 -120 TTTTTGAAAGAAAATTTTAAGATTAATTTGC 9 19 1 AAAATTTAAG 0.782442 -33 GGGTATATGCAAAATTTTAAATTTTCGGTTA 10 40 1 AAAATTTAAA 0.922847 -105 TGATGACGTCAAAGGTTTTTAACCCCTCGTA 10 113 1 AAAGTTTTTA 0.806313 -32 AACGGAAAAACGTTTTAAATCAGCTGAT 11 8 1 AAACTTTTAA 0.946712 -34 TATCTGAGCAAAAAATTTAAATTATTGAAGT 14 24 0 AAAATTTAAA 0.922847 -88 AACATGCGGCAAAGATTTAAATTACGTAATG 15 60 1 AAAGTTTAAA 0.882236 -154 TTTATTGGAGAAAGGTTTATGAGCAGAAAAA 19 23 0 AAAGTTTATG 0.603271 -51 CTTTCTCCAATAAAGTTTAAATAACGCTAAA 19 40 1 TAAATTTAAA 0.60144 -34 ACAGAAGGGGAAACGTTTTAATTCCTCTTAT 20 22 0 AAACTTTTAA 0.946712 -145 CCTATCACCAAAAGTTTTTGAGGAAGTCTT 24 10 1 AAAATTTTTG 0.666501 -133 ATATATAAAAAAAACTTTTAATAAACACTAC 24 97 0 AAAATTTTAA 0.907801 -46 AAAATTTTTTACACAGCCCCA 25 1 1 AAAATTTTTA 0.869221 -63 GTTTAGCAGCAAACGTTTATAACAATTAAAG 27 24 0 AAACTTTATA 0.935771 -66 GTTTGCTGCTAAACTTTTTAAGGCGGAAGTG 27 41 1 AAACTTTTAA 0.946712 -49 GGGGGGCACATAACCTTTAAATATCCTTACA 28 56 1 TAACTTTAAA 0.731388 -49 **** ****** Masking position 6 Map Score: 27.0481 Number of sites scoring better than the average of aligned sites = 224 Number in coding regions = 70 Number in noncoding regions = 154 Number of orfs with sites within 600 bp upstream = 187 Fraction of orfs with sites within 600 bp upstream = 0.0300353 Motif number 2 GCCTTTACATCCTCATCGGTTTCAGGCTGAACA 3 15 1 CCTCACTTTC 0.969307 -277 AAGAGTTGATGCTCATCCCTTGCAAAGGATTCT 3 113 0 GCTCACTTGC 0.901357 -179 AACTTTGGCTCCTCAGCTGTCTCGACACAAGAT 3 241 0 CCTCACTCTC 0.974662 -51 CAAAGTTTATATTCAGCCATTGCGAAGGGATAA 3 267 1 ATTCACTTGC 0.523744 -25 TCCTCGACTCAAGCAACTTCTGC 4 20 1 AAGCACCTGC 0.658622 -13 GTCATCACCTCCTTCATCAAATCAT 6 124 0 CATCACCTTC 0.914143 -15 TTTTCGGTTACATCATCATTCCCTGCTTTGCAT 10 61 1 CATCACTCCC 0.831427 -84 AAAATCATCACCGCAGCCTTTGCTGGGTCGGGA 13 40 0 CCGCACTTGC 0.963512 -23 TTGGATTTGACTTCCTCCTCTGCCAGCTTCCTT 15 135 0 CTTCCCCTGC 0.746589 -79 TGGCGCCTCATTTTTTGCTGACTCGCTC 15 196 0 CCTCATTTGC 0.669163 -18 ACGACTTCACACTCAACCGTCTCGTTTCCCCTG 17 61 0 ACTCACTCTC 0.892886 -48 ACAACCTCCCCAGCAACGACTTCACACTCAACC 17 76 0 CAGCACCTTC 0.846812 -33 CGCCTTCGCAACAACCTCCCCAGCAACG 17 91 0 TCGCACCCTC 0.830101 -18 TTAAAATACCTCTCCACTACTCCCTAAGGAGTC 20 105 1 TCTCCCCTCC 0.630423 -62 CCTCCCCAATCGCCTTGGGGTTT 21 1 1 CCTCCCTCGC 0.960734 -197 GTCATCTCACCTTTCTCTTTTTGCAGA 22 16 0 TCTCACTCTC 0.864897 -17 AGCATCCTCAACTTTCGCCATCTCAGAA 26 6 1 CCTCACTCGC 0.984115 -55 GTGTATCCTGACTCAACCTCCTCTTCGAGGCAG 29 45 0 ACTCACCCTC 0.924549 -36 GCCGGTTCCGGCTCAACGACCTCGTAATCCCTC 30 53 1 GCTCACCCTC 0.910385 -164 CCTCGTAATCCCTCAGCTCCTCCATAATAGCCT 30 72 1 CCTCACCTCC 0.962898 -145 TCCATCCTCCCAGCCTCCGCTGCGGGGTCGGAG 30 104 1 CAGCCCCTGC 0.77857 -113 ***** * **** Masking position 4 Map Score: 22.7809 Number of sites scoring better than the average of aligned sites = 3211 Number in coding regions = 3078 Number in noncoding regions = 133 Number of orfs with sites within 600 bp upstream = 97 Fraction of orfs with sites within 600 bp upstream = 0.0155798 Motif number 3 TTATAATTTTTTTCGATGTTGGTGAAAGG 5 6 0 TTTGAGTGGG 0.699335 -117 TAACACTGATATGTGATGATGGTAATCACAAGAT 6 42 0 ATGGAGAGGA 0.906945 -97 ATGAATGATGATTTGATGAAGGAGGTGATGAC 6 117 1 ATTGAGAGGG 0.906945 -22 ACTGGGAGTTCCGCAAATTAATCTT 9 37 0 CTGGATTCGA 0.69514 -15 TGCGGTTTAGCTTTGATGACGTCAAAGGTTTTTA 10 100 1 CTTGAGAGTA 0.627135 -45 CAAAACTACGCTGAGGTGTAGTTGATATGAGCAA 15 98 1 CTGGGGTGTG 0.835837 -116 CAGTACATCGATGAGAGTAACGAGGTTTGGATTT 15 160 0 ATGGATACGG 0.643663 -54 CCTGGTGATCCTGCGGCGTTCGGGACGCCGTGAC 16 11 1 CTGGGGTCGG 0.919819 -65 CTTAAACTTCCTGAGGTGTAGGTGGTGCG 18 52 1 CTGGGGTGGG 0.979353 -19 GCTACGGCCGCTGGGACTACGGGGTGGTAAG 20 146 1 CTGGATAGGG 0.969358 -21 CGTCAAAGAACTGTGAGTTCGGCAGGAGTTCAAA 21 41 0 CTGGATTGGA 0.904106 -157 ACTCACAGTTCTTTGACGATGGAAAATTACCCCT 21 57 1 CTTGAGAGGA 0.940009 -141 GCACTTCGAAGAGGAAGATTGACCACC 29 4 1 CTTGAGAGAG 0.715235 -77 GCAGCGGAGGCTGGGAGGATGGAGGCTATTATGG 30 93 0 CTGGAGAGGG 0.990891 -124 CCAGCCTCCGCTGCGGGGTCGGAGGTGTAGACGG 30 113 1 CTGGGGTGGG 0.979337 -104 CGATTAGACTACGGGAAAAACTTAAA 30 201 0 ATTGATAGGA 0.518266 -16 *** ** ** ** * Masking position 2 Map Score: 13.298 Number of sites scoring better than the average of aligned sites = 1135 Number in coding regions = 1080 Number in noncoding regions = 55 Number of orfs with sites within 600 bp upstream = 46 Fraction of orfs with sites within 600 bp upstream = 0.00738837 Motif number 4 TGCTTGAGTCGAGGATTTATAAAA 4 3 0 GAGGTTATAA 0.903646 -30 TTCTTCGGATGGAGGCAATTAAAAACCAATGT 7 65 1 GGAGAATTAA 0.772062 -236 CGTTGCAGGAGGAGTTATTTAAAAATATCGCT 7 250 0 GGAGATTTAA 0.793837 -51 TTGATTATACGAGGGGTTAAAAACCTTTGACG 10 119 0 GAGGTTAAAA 0.76655 -26 AATCCATTAGGAGGATATATAAACCTT 12 6 0 GAGGATATAA 0.938739 -52 GCTGGGTCGGGAAGCAATATAAATTTAACTAA 13 20 0 GAAGATATAA 0.816739 -43 TCCTTCCGCGGAAGGCTAAAAACGATTTCGAT 15 16 0 GAAGTAAAAA 0.456545 -198 CAGTTTATAAGAGGAATTAAAACGTTTCCCCT 20 16 1 GAGGTTAAAA 0.76655 -151 GAGTAGTGGAGAGGTATTTTAAGTTATCGGTT 20 95 0 GAGGTTTTAA 0.851628 -72 CAATCGCCTTGGGGTTTATTAAGCTTTGAACT 21 17 1 GGGGTATTAA 0.876964 -181 TTAATTGTGTGGGGTGATAAAAAGTATTAGCC 23 31 0 GGGGATAAAA 0.883365 -27 TTTTGGGCGAGGAGAAAAATAATAGTCTTTCG 24 66 1 GGAGAAATAA 0.846962 -77 AAAAGGTTAAGAGGCAAAATAAAGAGTTTTCT 26 35 0 GAGGAAATAA 0.930937 -26 AGAGCGGCGAATTAAATGCTAAAAT 28 4 1 GCGGAATTAA 0.658414 -101 TCAATTGAAGGGGGGCACATAACCTTTAAATA 28 47 1 GGGGACATAA 0.834824 -58 GCAGTTTTGAGGGGACAATTAATAAAACTTTT 31 25 0 GGGGAATTAA 0.920924 -28 **** ****** Masking position 11 Map Score: 12.1279 Number of sites scoring better than the average of aligned sites = 188 Number in coding regions = 150 Number in noncoding regions = 38 Number of orfs with sites within 600 bp upstream = 47 Fraction of orfs with sites within 600 bp upstream = 0.00754899 Motif number 5 TCAGCCATTGCGAAGGGATAACG 3 279 1 CGAAGGGATA 0.880225 -13 TTGCTTGAGTCGAGGATTTATAAAA 4 6 0 CGAGGATTTA 0.937635 -27 TGCTTCTGATGGAAGAGAAATTCTTATAAT 5 33 0 GGAAGAGAAA 0.738832 -90 AACGCCCTTCCGAGGCGTTAGCCCGGGTTC 7 113 0 CGAGGCGTTA 0.934005 -188 GTTCGTTGCAGGAGGAGTTATTTAAAAATA 7 255 0 GGAGGAGTTA 0.973023 -46 ATTGATTATACGAGGGGTTAAAAACCTTTG 10 122 0 CGAGGGGTTA 0.963026 -23 AAATCCATTAGGAGGATATATAAACCTT 12 9 0 GGAGGATATA 0.91053 -49 AAACCAGAAAGGAGGAGATAGGT 12 45 1 GGAGGAGATA 0.973023 -13 TCTTGGCTACCGAAGATTTAAAGATTATGA 18 17 1 CGAAGATTTA 0.809238 -54 TCTTTTTGGGCGAGGAGAAAAATAATAGTC 24 63 1 CGAGGAGAAA 0.936757 -80 ********** Masking position 3 Map Score: 8.92104 Number of sites scoring better than the average of aligned sites = 312 Number in coding regions = 284 Number in noncoding regions = 28 Number of orfs with sites within 600 bp upstream = 26 Fraction of orfs with sites within 600 bp upstream = 0.00417604 Motif number 6 TGTAAAACACCCAATCTGCGTTGTTCAGCCTG 3 37 0 CCATCTGCTT 0.924679 -255 AGTTTGCAAGCCTATCCTCATTATGGATTCGT 3 174 0 CCATCCTCTT 0.954854 -118 CTTCCCGCTTAACCTCCTTTTTAAGAAGT 10 8 1 CTAACCTCTT 0.929344 -137 GTCATCAAAGCTAAACCGCATTGCCTATGCAA 10 88 0 CTAACCGCTT 0.968574 -57 GAAGTCAAATCCAAACCTCGTTACTCTCATCG 15 154 1 CCAACCTCTT 0.981516 -60 TCTCGGCGGCCCCATCTGCTTTAAGGGGTG 16 56 1 CCATCTGCTT 0.924679 -20 CCTCCCCAATCGCCTTGGGGTTTATT 21 5 1 CCAATCGCTT 0.950419 -193 GAAAATTACCCCTAACCGCGTCTATACTAAAG 21 78 1 CCAACCGCTC 0.979489 -120 AAGTATTAGCCCAAATCGCTATGCTGGTGCC 23 10 0 CCAATCGCAT 0.708933 -48 ACAATTAAAGCCTAACTACTTTC 27 2 0 CCAACTACTT 0.799912 -88 TGTATCCTGACTCAACCTCCTCTTCGAGGCAG 29 45 0 CTAACCTCTC 0.834659 -36 ** ****** ** Masking position 4 Map Score: 10.4886 Number of sites scoring better than the average of aligned sites = 156 Number in coding regions = 144 Number in noncoding regions = 12 Number of orfs with sites within 600 bp upstream = 13 Fraction of orfs with sites within 600 bp upstream = 0.00208802 Motif number 7 TACATCCTCATCGGTTTCAGGCTGAACAACG 3 20 1 TCGGTTTAGG 0.800888 -272 TTTTTCGATGTTGGTGAAAGG 5 1 0 TTGGTGAAGG 0.974561 -122 CATGCTAGAATTGGTGGTATGTACAGAGCAA 7 19 0 TTGGTGGATG 0.839438 -282 AAAAGTTTCTTCGGATGGAGGCAATTAAAAA 7 59 1 TCGGATGAGG 0.925105 -242 TTATCTAAGGTTCGTTGCAGGAGGAGTTATT 7 263 0 TTCGTTGAGG 0.931952 -38 AAAGCTTATATTGGTTAAAGAACATCATATA 14 89 1 TTGGTTAAGA 0.661658 -23 TAATGTTCCTTCCGCGGAAGGCTAAAAACGA 15 23 0 TCCGCGGAGG 0.909822 -191 TTAAACTTTATTGGAGAAAGGTTTATGAGCA 19 29 0 TTGGAGAAGG 0.938497 -45 CCCTAAGGAGTCCGTAGGAGGCTACGGCCGC 20 126 1 TCCGTAGAGG 0.82824 -41 TCAAAAACTTTTGGTGATAGG 24 1 0 TTGGTGAAGG 0.974561 -142 AGGGCAGGCATCGGTGAGAGGAGCATG 25 47 1 TCGGTGAAGG 0.977963 -17 CAACCTCCTCTTCGAGGCAGATTTTCAGGTG 29 34 0 TTCGAGGAGA 0.673522 -47 ******* *** Masking position 9 Map Score: 7.03493 Number of sites scoring better than the average of aligned sites = 321 Number in coding regions = 287 Number in noncoding regions = 34 Number of orfs with sites within 600 bp upstream = 38 Fraction of orfs with sites within 600 bp upstream = 0.00610344 Motif number 8 GAGTATGAGCTGAGCATTAAAGAGTATTGTA 2 16 1 TGAGCATAAA 0.757497 -82 ATGCTCAGGATTTGCTCAAAATACCCAGAAT 3 80 0 TTTGCTAAAA 0.661513 -212 GAGCAAATCCTGAGCATAAAGAATCCTTTGC 3 94 1 TGAGCAAAAG 0.952884 -198 CATTTTTATCTGAGCAAAAAATTTAAATTAT 14 30 0 TGAGCAAAAA 0.960913 -82 GCTGAGCGAGTCAGCAAAAAATGAGGCGCCA 15 193 1 TCAGCAAAAA 0.912076 -21 GAAAGGTTTATGAGCAGAAAAAATCACGATA 19 14 0 TGAGCAAAAA 0.960909 -60 CTTTAATCCATTTGCAAAAAGCCTTAAATAT 21 146 1 TTTGCAAAAG 0.926902 -52 TGAAATCTGCAAAAAGAGAAAGGTGA 22 6 1 TCTGCAAAAG 0.895111 -27 TTAAACTTTGCCAAAAGCGCGCTGGAT 24 126 0 TTTGCCAAAG 0.704864 -17 TTGGTGGGGCTGTGTAAAAAATTTT 25 5 0 TGTGTAAAAA 0.638191 -59 CTTAAAAAGTTTAGCAGCAAACGTTTATAAC 27 32 0 TTAGCACAAA 0.737033 -58 TGAGAGAATGTTTGCACAAAATTCTTTAAGT 30 177 1 TTTGCAAAAA 0.938992 -40 ****** **** Masking position 9 Map Score: 6.64129 Number of sites scoring better than the average of aligned sites = 140 Number in coding regions = 116 Number in noncoding regions = 24 Number of orfs with sites within 600 bp upstream = 29 Fraction of orfs with sites within 600 bp upstream = 0.00465789 Motif number 9 TAAACTTTGGCTCCTCAGCTGTCTCGACACA 3 245 0 CTCCTCAGCG 0.847113 -47 ATTATAAGAATTTCTCTTCCATCAGAAGCAC 5 33 1 TTTCTCTTCA 0.562267 -90 ATTTGACTTCCTCCTCTGCCAGCTTCCTTAT 15 133 0 CTCCTCTGCA 0.973646 -81 CACCCCTTAAAGCAGATGGGG 16 65 0 CACCCCTTAA 0.491995 -11 ACCGTCTCGTTTCCCCTGCTGTCGAAAACGA 17 48 0 TTCCCCTGCG 0.944145 -61 TCGCAACAACCTCCCCAGCAACGACTTCACA 17 83 0 CTCCCCAGCA 0.89734 -26 AACGTTTTAATTCCTCTTATAAACTGCCGCC 20 11 0 TTCCTCTTAA 0.79519 -156 ATTAAAACGTTTCCCCTTCTGTCTGTGCTTT 20 31 1 TTCCCCTTCG 0.943144 -136 AGGTTATGTGCCCCCCTTCAATTGAGGATTA 28 41 0 CCCCCCTTCA 0.878196 -64 ACAGGCTTGCTTCCTCTTAGACGGTGATGTT 28 84 1 TTCCTCTTAA 0.79519 -21 GTGGTCAATCTTCCTCTTCGAAGTGC 29 6 0 TTCCTCTTCA 0.951224 -75 CTGACTCAACCTCCTCTTCGAGGCAGATTTT 29 40 0 CTCCTCTTCA 0.973159 -41 TCCTCCCAGCCTCCGCTGCGGGGTCGGAGGT 30 108 1 CTCCGCTGCG 0.878131 -109 ********* * Masking position 6 Map Score: 11.0998 Number of sites scoring better than the average of aligned sites = 1015 Number in coding regions = 960 Number in noncoding regions = 55 Number of orfs with sites within 600 bp upstream = 46 Fraction of orfs with sites within 600 bp upstream = 0.00738837 Motif number 10 GCGATTAACGTGGTCTTATTGCAT 1 25 0 GAAACGTGGT 0.939712 -14 ATGATGATTTGATGAAGGAGGTGATGAC 6 121 1 GAAAGGAGGT 0.972848 -18 ACCCACTTCTTAAAAAGGAGGTTAAGCGGGAA 10 12 0 TAAAGGAGGT 0.800043 -133 ACATCGATGAGAGTAACGAGGTTTGGATTTGA 15 158 0 GAAACGAGGT 0.972848 -56 AACTTCCTGAGGTGTAGGTGGTGCG 18 56 1 GGTAGGTGGT 0.961125 -15 ACGGCCGCTGGGACTACGGGGTGGTAAG 20 149 1 GGTACGGGGT 0.954087 -18 AGGAGCTGAGGGATTACGAGGTCGTTGAGCCG 30 61 0 GGTACGAGGT 0.982708 -156 CCTCCGCTGCGGGGTCGGAGGTGTAGACGGTG 30 117 1 GGTCGGAGGT 0.937868 -100 ** ******** Masking position 12 Map Score: 2.76429 Number of sites scoring better than the average of aligned sites = 250 Number in coding regions = 236 Number in noncoding regions = 14 Number of orfs with sites within 600 bp upstream = 18 Fraction of orfs with sites within 600 bp upstream = 0.0028911 Motif number 11 AATTTCTCTTCCATCAGAAGCACAGGAAGA 5 41 1 CCATCAGAAG 0.94692 -82 TTAATTGCCTCCATCCGAAGAAACTTTTAT 7 57 0 CCATCCGAAG 0.923103 -244 ATTCTTTCCCTCCAGAATTATCTAAGGT 7 283 0 CCTCCAGAAT 0.786784 -18 CCTATCACCAAAAGTTTTTGAGGA 24 5 1 TCACCAAAAG 0.938766 -138 TTACACAGCCCCACCAAAAGGAAATGGTAG 25 19 1 CCACCAAAAG 0.969384 -45 AGATCGTTTTTCACCCGAAGTTCTACACCG 30 144 0 TCACCCGAAG 0.95517 -73 GAACTATCGTCTCCAAAAGTTTTATTAAT 31 10 1 TCTCCAAAAG 0.86961 -43 ********** Masking position 8 Map Score: 2.70656 Number of sites scoring better than the average of aligned sites = 199 Number in coding regions = 187 Number in noncoding regions = 12 Number of orfs with sites within 600 bp upstream = 10 Fraction of orfs with sites within 600 bp upstream = 0.00160617 Motif number 12 GCGCTTGTCATTGCTGGAGCTTCAGGGTTA 7 163 1 TTGCTGGAGC 0.969125 -138 ACCGCAGCCTTTGCTGGGTCGGGAAGCAAT 13 34 0 TTGCTGGGTC 0.912074 -29 TGTGAAGTCGTTGCTGGGGAGGTTGTTGCG 17 83 1 TTGCTGGGGA 0.912074 -26 TCCTGAGGTGTAGGTGGTGCG 18 60 1 TAGGTGGTGC 0.849056 -11 CCAAATCGCTATGCTGGTGCC 23 2 0 ATGCTGGTGC 0.951376 -56 CCATTTCCTTTTGGTGGGGCTGTGTAAAAA 25 16 0 TTGGTGGGGC 0.989349 -48 CCAAAAGGAAATGGTAGGGCAGGCATCGGT 25 32 1 ATGGTAGGGC 0.866062 -32 GGAGGCTATTATGGAGGAGCTGAGGGATTA 30 77 0 ATGGAGGAGC 0.778091 -140 ********** Masking position 7 Map Score: 4.03316 Number of sites scoring better than the average of aligned sites = 202 Number in coding regions = 186 Number in noncoding regions = 16 Number of orfs with sites within 600 bp upstream = 15 Fraction of orfs with sites within 600 bp upstream = 0.00240925 Motif number 13 TAACGTGGTCTTATTGCATTTAAACGTTTT 1 14 0 TTATTGCATT 0.81174 -25 TTGAGTGGGATAATTCCAATACTAACGAAT 3 150 1 TAATTCCAAT 0.843797 -142 AAATAGGATGTTAATCCATTTAAATCTTGT 6 19 1 TTAATCCATT 0.949508 -120 GGTTTTTCGTTAAATCCATTAGGAGGATAT 12 20 0 TAAATCCATT 0.909739 -38 AACCAACCCTTTAATCCATTTGCAAAAAGC 21 138 1 TTAATCCATT 0.949508 -60 CAATTGAGGATTATTCCAATTTTAGCATTT 28 24 0 TTATTCCAAT 0.909739 -81 ********** Masking position 5 Map Score: 0.535378 Number of sites scoring better than the average of aligned sites = 21 Number in coding regions = 13 Number in noncoding regions = 8 Number of orfs with sites within 600 bp upstream = 12 Fraction of orfs with sites within 600 bp upstream = 0.0019274 Motif number 14 GTTCGCTCCGCCCTCTTCCTGTGCTTCTGA 5 54 0 CCCTCTTCCT 0.970925 -69 CCCCCATTTCTTTTTCAATTAT 5 111 0 CCCATTTCTT 0.931063 -12 TTTGCATATACCCACTTCTTAAAAAGGAGG 10 23 0 CCCACTTCTT 0.95503 -122 TGCCTGCCCTACCATTTCCTTTTGGTGGGG 25 27 0 ACCATTTCCT 0.931062 -37 TTGCCTCTTAACCTTTTCCTC 26 50 1 ACCTTTTCCT 0.931063 -11 TCCTGACTCAACCTCCTCTTCGAGGCAGAT 29 43 0 ACCTCCTCTT 0.831604 -38 ********** Masking position 7 Map Score: 0.590609 Number of sites scoring better than the average of aligned sites = 246 Number in coding regions = 234 Number in noncoding regions = 12 Number of orfs with sites within 600 bp upstream = 10 Fraction of orfs with sites within 600 bp upstream = 0.00160617 Motif number 15 ********** No masking Map Score: 7.00128e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0