AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00051_bsub_reg_100.orf -o00051_bsub_100.ace -a/home/amcguire/genomes/ORF_bsub.txt -z/home/amcguire/genomes/bsub.fna -g0.44 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.44 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 ybfT 218 similar to glucosamine-6-phosphate isomerase #2 mtlA 172 phosphotransferase system (PTS) mannitol-specific enzyme IIABC component #3 mtlD 52 mannitol-1-phosphate dehydrogenase #4 gutB 201 sorbitol dehydrogenase #5 treP 192 phosphotransferase system (PTS) trehalose-specific enzyme IIBC component #6 glvA 300 6-phospho-alpha-glucosidase #7 yfiA 64 similar to hypothetical proteins #8 yhxB 131 similar to phosphomannomutase #9 yjdE 198 similar to mannose-6-phosphate isomerase #10 yjmC 104 similar to malate dehydrogenase #11 ptsG 238 phosphotransferase system (PTS) glucose-specific enzyme IIABC component #12 fruR 279 transcriptional regulator (DeoR family) #13 murG 122 UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide)pyrophosphoryl-undecaprenol N-acetylglucosamine transferase #14 xylA 300 xylose isomerase #15 ypqE 137 similar to phosphotransferase system enzyme II #16 yqgQ 109 yqgQ #17 levD 189 phosphotransferase system (PTS) fructose-specific enzyme IIA component #18 pfk 183 6-phosphofructokinase #19 yulE 25 similar to L-rhamnose isomerase #20 yulB 56 similar to transcriptional regulator (DeoR family) #21 yuxG 137 alternate gene name: yulA; similar to sorbitol-6-phosphate 2-dehydrogenase #22 yugK 103 similar to NADH-dependent butanol dehydrogenase #23 yugJ 229 similar to NADH-dependent butanol dehydrogenase #24 tpi 30 triose phosphate isomerase #25 pgk 300 phosphoglycerate kinase #26 pmi 264 mannose-6-phosphate isomerase #27 ywpB 191 similar to hydroxymyristoyl-(acyl carrier protein) dehydratase #28 fbaA 180 fructose-1,6-bisphosphate aldolase #29 sacP 300 phosphotransferase system (PTS) sucrose-specific enzyme IIBC component #30 licB 127 phosphotransferase system (PTS) lichenan-specific enzyme IIB component #31 bglP 300 phosphotransferase system (PTS) beta-glucoside-specific enzyme IIABC component #32 iolI 85 alternate gene name: yxdH; myo-inositol catabolism #33 iolG 22 myo-inositol 2-dehydrogenase #34 iolD 203 alternate gene name: yxdD; myo-inositol catabolism #35 fbp 300 fructose-1,6-bisphosphatase Motif number 1 TATGGTCTCAATGAAAAAGAACGGATTGCAT 1 30 0 ATGAAAAAGA 0.756063 -189 TTTTTTAAAAATAAAAAGGCTCCTGGTT 2 8 0 ATAAAAAGGT 0.681201 -165 CCAGACTAGGATGAAAGCGCTATAAAAAAGT 5 90 1 ATGAAAGCGT 0.968997 -103 TATACAAGTTATAAAAACGGATACGGAGGGG 5 167 1 ATAAAAACGA 0.860363 -26 TCCAATTCTTATGAAAAGGTTCTTTTGTACG 6 60 0 ATGAAAAGGT 0.93577 -241 AAAAGGGCAAATGTAAACGGTTAAACTGGAA 11 143 1 ATGTAAACGT 0.735206 -96 GCTAAAAATCATGACAACGAATTCACAGGCG 11 180 0 ATGACAACGA 0.756108 -59 TCACCTCCTAATGAAAACGTATTCATTTTGA 12 256 0 ATGAAAACGA 0.97675 -24 AGGTGGAATATGGAAAGGAAGCTGGCTTTT 16 10 1 ATGGAAAGGA 0.843375 -100 GTCAGTCAAGAAGAAAACGCTGACAAAAAAG 16 36 0 AAGAAAACGT 0.870147 -74 GCGTATTCATAAGGAAGCGGTCAGTCAAGAA 16 55 0 AAGGAAGCGT 0.648216 -55 CCGCTTCCTTATGAATACGCTTATGATAGTT 16 66 1 ATGAATACGT 0.6922 -44 TGAAATAACAATGAAAACGCTTAACACAACT 17 110 1 ATGAAAACGT 0.978339 -80 CCTAAAAACAATGAAAAGGGATCTCCATCCT 18 113 0 ATGAAAAGGA 0.931276 -71 GCAAAAATAAACAAAAACGATTCAAAAACAA 21 58 1 ACAAAAACGT 0.514787 -80 ATCATATATAATGAAAACGGATACAAATAAA 21 95 1 ATGAAAACGA 0.97675 -43 ACGGATACAAATAAAAGGGTATGGAGGAATA 21 111 1 ATAAAAGGGA 0.579005 -27 GTTCTTTCGAATAGAAGCGCTATAATGAAAG 25 22 1 ATAGAAGCGT 0.645586 -279 AAGCGCTATAATGAAAGCGGACAAGGGAAGG 25 36 1 ATGAAAGCGA 0.966745 -265 TACCCCTTCAAAGAAAACGCTTCCTATCTAT 26 123 0 AAGAAAACGT 0.870147 -142 AAAATAGTTGACGAAAACGCTATCATGATTT 29 126 1 ACGAAAACGT 0.878549 -175 ATGATTTATGATGAAAGCGTATTCTTAATCT 29 150 1 ATGAAAGCGA 0.966745 -151 ATTTGCGTAAATGAAAAAGGATCGCTGTGTC 29 223 1 ATGAAAAAGA 0.756063 -78 CTGAGTGTTTATGAAAGCGATTTCATAATAT 30 51 1 ATGAAAGCGT 0.968997 -77 AACACCAAAAATGAAAGCGTTGACATCTCAC 31 48 1 ATGAAAGCGT 0.968997 -253 ATCCATGTAGATGGAAAGGAAGAGCCTTTTG 34 106 1 ATGGAAAGGA 0.843375 -98 ATTTTCGGTCATGGAAACGTATTAGGGATCG 34 154 1 ATGGAAACGA 0.943482 -50 ********* * Masking position 1 Map Score: 34.3608 Number of sites scoring better than the average of aligned sites = 756 Number in coding regions = 644 Number in noncoding regions = 112 Number of orfs with sites within 600 bp upstream = 140 Fraction of orfs with sites within 600 bp upstream = 0.0224863 Motif number 2 GTATAGGGACTGTAAGCGTTTTAACATAGAGTC 2 79 1 TGAGCGTTTA 0.964179 -94 CAACACTTTTTTATAGCGCTTTCATCCTAGTCT 5 92 0 TTAGCGTTTC 0.867818 -101 ACGACCTCCTTGATAACGTTTACAATTCCATTT 6 275 0 TGAACGTTAC 0.964343 -26 AAAGGGCAAATGTAAACGGTTAAACTGGAAGAC 11 144 1 TGAACGTTAA 0.854241 -95 CTAAAAATCATGACAACGAATTCACAGGCGTAA 11 177 0 TGAACGATTC 0.973166 -62 CACCTCCTAATGAAAACGTATTCATTTTGAATA 12 253 0 TGAACGATTC 0.973166 -27 CTGGCTTTTTTGTCAGCGTTTTCTTCTTGACTG 16 32 1 TGAGCGTTTC 0.992013 -78 GAAATAACAATGAAAACGCTTAACACAACTGTG 17 111 1 TGAACGTTAA 0.854241 -79 TCATATATAATGAAAACGGATACAAATAAAAGG 21 96 1 TGAACGATAC 0.926993 -42 TAAGCAGCTTTGCCGGCGCTTTCGCCTAAGGCC 25 143 1 TGGGCGTTTC 0.940305 -158 TATAATAGATAGGAAGCGTTTTCTTTGAAGGGG 26 119 1 AGAGCGTTTC 0.914 -146 TCATAAATCATGATAGCGTTTTCGTCAACTATT 29 128 0 TGAGCGTTTC 0.992013 -173 TGATTTATGATGAAAGCGTATTCTTAATCTGAA 29 151 1 TGAGCGATTC 0.983141 -150 TGAGTGTTTATGAAAGCGATTTCATAATATGAT 30 52 1 TGAGCGTTTC 0.992013 -76 ATTCGTGAGATGTCAACGCTTTCATTTTTGGTG 31 50 0 TGAACGTTTC 0.987219 -251 TTTTCGGTCATGGAAACGTATTAGGGATCGGGC 34 155 1 TGAACGATTA 0.887119 -49 ** **** **** Masking position 11 Map Score: 26.7539 Number of sites scoring better than the average of aligned sites = 191 Number in coding regions = 133 Number in noncoding regions = 58 Number of orfs with sites within 600 bp upstream = 67 Fraction of orfs with sites within 600 bp upstream = 0.0107613 Motif number 3 AGCGACAAACAAAACAGGGAGGGTTTATAT 2 153 1 AAAACAGGAG 0.663574 -20 AACGTGTTAAAAAGCAGATAAAATGGGGGCA 4 118 1 AAAGCAGAAA 0.413773 -84 TTTTTCCCATAGAGCGGGAAATTTCTCATTT 6 178 0 AGAGCGGGAA 0.862313 -123 ACAGATTCGAAAATGGGGGAATTTCAT 7 7 0 AAATGGGGAA 0.902748 -58 AATAGAAAGAAAATGGGGGGATCTGAT 7 48 1 AAATGGGGGA 0.914278 -17 TTACGTGCCGAAAGGGGGAGATCTCAGGTTA 8 46 1 AAAGGGGGGA 0.978094 -86 GTACCGAAAGAGAGCGGGGGAAACCAGCATC 9 51 1 AGAGCGGGGA 0.877988 -148 GAAATCGAATAAAGCGGGGGATTTTC 9 183 1 AAAGCGGGGA 0.973244 -16 AAAAAACTGAAAAGGAAGGAGGCACTTGC 10 86 1 AAAGGAAGAG 0.54066 -19 TTGAGGGAAAAAAACGGGAAGTTCATTCTCG 11 70 1 AAAACGGGAG 0.821643 -169 CAGACTAGTAAAAAGAGGAGGTCAATTCTT 11 219 1 AAAAGAGGGG 0.735572 -20 AAGATTAAACAAATGGAGTGGATGAAGTGGA 14 65 0 AAATGGAGGG 0.430044 -236 AATTTATTTTTAAGGGGGAAATCAC 14 286 1 TAAGGGGGAA 0.766731 -15 TCTGGTTAAAAAAGGCGGTGGCGATA 15 6 0 AAAGGCGGGG 0.633112 -132 ATGGATGTACAAAACAGGAAAGGAGCAATAG 17 167 1 AAAACAGGAA 0.789524 -23 AAAACTGATAAAGGGAGAGAGCCGT 19 10 1 AAAGGGAGGA 0.857286 -16 AAAAAGGGGAAATAGCCGTTTG 22 2 1 AAAAGGGGAA 0.91492 -102 ATAAAAAATCTAAGGAGGAGATGTC 23 215 1 TAAGGAGGGA 0.617882 -15 CGCTATAATGAAAGCGGACAAGGGAAGGGGA 25 39 1 AAAGCGGAAA 0.622427 -262 CAAAAAGAAGAAACAAATGAATC 28 3 1 AAAAGAAGAA 0.382512 -178 ATCATGAAAGAAAGCAGGAAAAGAC 29 5 0 AAAGCAGGAA 0.931295 -296 TGTGACTGGTAAAGCAGGCAAGACCTAAAAT 29 194 1 AAAGCAGGAA 0.931295 -107 TGTTTAAATAAAAGGGGGAGAAATAG 29 285 1 AAAGGGGGGA 0.978094 -16 TGTTACTGCGAAAGCAGGCAAAACCTAAATG 31 130 1 AAAGCAGGAA 0.931295 -171 TGATACAAAAAAAGCTGGTGAAAGGCGGCCA 31 239 1 AAAGCTGGGA 0.64336 -62 TCTAAAACGCAGATGGGGGAGTCTGGC 32 69 1 AGATGGGGAG 0.491242 -17 TAAGTGGAAGAAATGAGGCAAACAATCTTAC 35 161 1 AAATGAGGAA 0.798973 -140 AAGAGGTGCCAAATGGGGTAAGCAAGAGCTT 35 223 0 AAATGGGGAA 0.902748 -78 AGAGACAATTAAAACGAGAGAAAGAGGTGCC 35 244 0 AAAACGAGGA 0.575249 -57 ******** ** Masking position 3 Map Score: 26.2149 Number of sites scoring better than the average of aligned sites = 1630 Number in coding regions = 1212 Number in noncoding regions = 418 Number of orfs with sites within 600 bp upstream = 419 Fraction of orfs with sites within 600 bp upstream = 0.0672984 Motif number 4 GTTCAGAGAATGATGCTTCCCTTTGACTCTATG 2 103 0 TAGCTCCCTT 0.622554 -70 AAAAGTACAGTGCCGCTGTCCTTTTATACAGCA 4 72 1 TCGCTTCCTT 0.942763 -130 TTTTCTCTGTTACTGCCCCCATTTTATCTGCTT 4 129 0 TCGCCCCATT 0.695187 -73 ATAACGGGCTGTCTGCAGCCCGTTATTTCTTTT 8 14 1 GCGCACCCGT 0.645274 -118 TATAGGGAGCGGCTGCTCTCCGTGCAAACAACA 9 126 1 GCGCTTCCGT 0.904424 -73 GCAAGTGCCTCCTTCCTTTTCAGTTTTTT 10 86 0 GCCCTCCTTT 0.912132 -19 TGACAAAAAAGCCAGCTTCCTTTCCATATTCCA 16 14 0 GCGCTCCTTT 0.975675 -96 CTTCTTGACTGACCGCTTCCTTATGAATACGCT 16 54 1 GCGCTCCTTA 0.785955 -56 ATCTATTGCTCCTTTCCTGTTTTGTACAT 17 171 0 TCCCTTCCTG 0.670668 -19 GCGGCATATCTGCTGCTTTCTTTTTTTGTTAAA 21 23 1 TCGCTTCTTT 0.850582 -115 ATAGCCGTTTGGCTGCTTCCCTTTTTCTTTTTT 22 22 1 GCGCTCCCTT 0.991457 -82 GCGAGGGCAGGCCAGCTTCCCTCATATGGAGAA 23 82 0 GCGCTCCCTC 0.940286 -148 CCCTTCCCTTGTCCGCTTTCATTATAGCGCTTC 25 35 0 GCGCTTCATT 0.897868 -266 AAGGGAGTCCGTCCCCTTCCCTTGTCCGCTTTC 25 48 0 GCCCTCCCTT 0.967779 -253 TTTCGCCTAAGGCCGCTGCCCTGGCTTTTAGAC 25 162 1 GCGCTCCCTG 0.982283 -139 GATCCGTACCCCTCCCCTGTAAATAACTG 26 246 0 TCCCTCCCTG 0.829758 -19 CATAACTTTTGACGGCTCTCATTGACAGTTGGT 27 54 1 GCGCTTCATT 0.897868 -138 GTCTTTTCCTGCTTTCTTTCATGATTGAG 29 7 1 TCGCTTCTTT 0.850582 -294 GCTGGTGAAAGGCGGCCACCTTTCATCCAGCAG 31 252 1 GCGCCCCTTT 0.927536 -49 GGGATATGGCGACAGCCTTCCTGCCGAACTCCC 32 30 1 GCGCCTCCTG 0.880845 -56 * * *** ***** Masking position 6 Map Score: 23.4321 Number of sites scoring better than the average of aligned sites = 623 Number in coding regions = 559 Number in noncoding regions = 64 Number of orfs with sites within 600 bp upstream = 67 Fraction of orfs with sites within 600 bp upstream = 0.0107613 Motif number 5 CCCTGTTTTGTTTGTCGCTGTAAGATACAAAAA 2 139 0 TTTGTCGTAA 0.900221 -34 TTTAAAATAATTTGTAAATAAAATGTGTTTGTA 10 30 1 TTTGTAATAA 0.529265 -75 GTTGTCATGATTTTTAGCTGTAAGGTCAGACTA 11 193 1 TTTTTAGTAA 0.853683 -46 ATAAAAGACTTTTTTCATTAAAATAAGAAGAAA 12 64 1 TTTTTCATAA 0.82629 -216 CACCTATTAGTTTGTTGTTTAAACAAACTAACT 14 211 0 TTTGTTGTAA 0.886205 -90 AAACAGTTTTTTCATATGAACCTGTATTAA 17 8 1 TTTTTCAAAA 0.452759 -182 CAGGTTTATTTTTTTCGTTTTAAGTGTTTCAAC 17 60 1 TTTTTCGTAA 0.93721 -130 CCAATAGCAATTTGTTGTTGAAACACTTAAAAC 17 76 0 TTTGTTGTAA 0.886205 -114 AAATAAATTGTTTTTAAATAAAATTTAAGGAAT 18 51 0 TTTTTAATAA 0.650221 -133 GCTGCTTTCTTTTTTTGTTAAAAAGCAAAAATA 21 34 1 TTTTTTGTAA 0.927627 -104 ATAATTCTCCTTTTTTGATACAAATTAATAAAA 26 42 0 TTTTTTGTAA 0.927965 -223 GTGGAAAGCTTTTTTCGCTAGAAGACAATCAGG 28 136 1 TTTTTCGTAA 0.93721 -45 CGTCAACTATTTTTTTAGTTAAATAGTTTGATA 29 106 0 TTTTTTATAA 0.804488 -195 ATTTTAGGTCTTTTTTGTTTAAATAAAAGGGGG 29 270 1 TTTTTTGTAA 0.927971 -31 TTCACCAGCTTTTTTTGTATCAAATGCTGCATC 31 228 0 TTTTTTGAAA 0.690996 -73 ******* * ** Masking position 12 Map Score: 10.9359 Number of sites scoring better than the average of aligned sites = 247 Number in coding regions = 174 Number in noncoding regions = 73 Number of orfs with sites within 600 bp upstream = 87 Fraction of orfs with sites within 600 bp upstream = 0.0139737 Motif number 6 AAGCCTGCACCTCCTATTAGTACT 4 5 1 CTGCACCTCC 0.966155 -197 GCCAACCCCTCCGTATCCGTTT 5 181 0 CAACCCCTCC 0.939282 -12 GCACGGAGAGCAGCCGCTCCCTATAATTGT 9 121 0 CAGCCGCTCC 0.94302 -78 GCTTCACCTCCTAATGAAAAC 12 269 0 CTTCACCTCC 0.935606 -11 ATATCCACTTCATCCACTCCATTTGTTTAA 14 62 1 CATCCACTCC 0.909273 -239 GACATCTCCTCCTTAGATTTTT 23 218 0 CATCTCCTCC 0.907002 -12 GAGTCTCCTCCTGCACCTGCACCATTTAGG 31 153 0 CTGCACCTGC 0.884169 -148 TCAAATGCTGCATCACCTCCTAAAAGAGAA 31 212 0 CATCACCTCC 0.969777 -89 TGACAGCCACTCCTTCTGTTGG 33 10 0 CAGCCACTCC 0.951669 -13 AGAATTTAATCAGCGCCTGCGCAGTTGTTA 34 62 0 CAGCGCCTGC 0.883641 -142 ********** Masking position 8 Map Score: 9.0425 Number of sites scoring better than the average of aligned sites = 215 Number in coding regions = 174 Number in noncoding regions = 41 Number of orfs with sites within 600 bp upstream = 48 Fraction of orfs with sites within 600 bp upstream = 0.0077096 Motif number 7 ACAGTCATGTGCCAAAGTCCTCTTTACTTT 2 44 1 GCCAAAGTCC 0.842315 -129 ATGACGACCTCCTTGATAACGT 6 289 0 GACGACCTCC 0.941481 -12 TGACAAAAAAGCCAGCTTCCTTTCCATATT 16 17 0 GCCAGCTTCC 0.842213 -93 AAAAATATAAGACGGACTACGATATGAGGA 20 25 1 GACGGACTAC 0.771676 -32 AAGGGAAGCAGCCAAACGGCTATTTCCCCT 22 15 0 GCCAAACGGC 0.648561 -89 GCGAGGGCAGGCCAGCTTCCCTCATATGGA 23 85 0 GCCAGCTTCC 0.842213 -145 AAGGGAAGGGGACGGACTCCCTTTCCCTTT 25 58 1 GACGGACTCC 0.971807 -243 CTGGCTTTTAGACGAACTGCCCTGTGCCGA 25 182 1 GACGAACTGC 0.872919 -119 GCCATATCCCGCCGAACTCCATGCTCAGC 32 10 0 GCCGAACTCC 0.985897 -76 CAGCCTTCCTGCCGAACTCCCTTCATATCT 32 42 1 GCCGAACTCC 0.985897 -44 GCCAGACTCCCCCATCTGCG 32 76 0 GCCAGACTCC 0.980125 -10 ********** Masking position 3 Map Score: 7.33285 Number of sites scoring better than the average of aligned sites = 308 Number in coding regions = 275 Number in noncoding regions = 33 Number of orfs with sites within 600 bp upstream = 36 Fraction of orfs with sites within 600 bp upstream = 0.0057822 Motif number 8 TTTAAGATTACAAAAAAGGTAAAAAAACCA 6 129 1 CAAAAAAGGT 0.74992 -172 TTTTACACAACAAAAAGGCATGAGCAAAAT 11 117 0 CAAAAAGGCA 0.843433 -122 TAGACTGGGGGAAAAAAGAA 13 113 1 GAAAAAAGAA 0.720811 -10 AAAACTGATAAAGGGAGAGAGCCGT 19 7 1 GATAAAGGGA 0.765332 -19 TGCTTTTTAACAAAAAAAGAAAGCAGCAGA 21 31 0 CAAAAAAAGA 0.515262 -107 TGACAAAAAAGAAAAAGGGAAGCAGCCAAA 22 29 0 GAAAAAGGGA 0.974435 -75 GGTCTTCATGGAAAAAGGGAAAGGGAGTCC 25 71 0 GAAAAAGGGA 0.974435 -230 GCCCTGTGCCGAAAAAGACTGCGATCTGCC 25 200 1 GAAAAAGACT 0.550477 -101 TAATTTGTATCAAAAAAGGAGAATTATTCT 26 48 1 CAAAAAAGGA 0.864629 -217 GTTGTCATAGGAAAAAGGCAGCTTATACGG 26 180 1 GAAAAAGGCA 0.940021 -85 TAGCGCGGTTGAAAAAGAGATTAATTCATA 27 94 1 GAAAAAGAGA 0.863822 -98 TAGTTATGGAGAAAAAGCGATCTGAGTATT 28 73 1 GAAAAAGCGA 0.788174 -108 GTCTTCTAGCGAAAAAAGCTTTCCACCCTA 28 132 0 GAAAAAAGCT 0.782006 -49 TTGCGTAAATGAAAAAGGATCGCTGTGTCC 29 225 1 GAAAAAGGAT 0.713167 -76 ATTCGCCAACGAATAAAGGACACAGCGATC 29 242 0 GAATAAAGGA 0.613896 -59 CGCAGCAACGGAAAAAAGGTATATACAGGC 30 13 0 GAAAAAAGGT 0.897164 -115 ********** Masking position 5 Map Score: 9.94118 Number of sites scoring better than the average of aligned sites = 1433 Number in coding regions = 1209 Number in noncoding regions = 224 Number of orfs with sites within 600 bp upstream = 232 Fraction of orfs with sites within 600 bp upstream = 0.0372631 Motif number 9 TGTATCCTTCTTTTATAACAAATTTTCAGAAATTAATA 1 91 1 TTTAACATTA 0.623496 -128 CACCCTGCTTTTTAATGTCATATTCAATAAGTGCTTGT 5 18 1 TTTATCATTT 0.875525 -175 GTATATACAACTTATAATCATATTGTATTCCTGTATAT 5 134 0 CTTTTCATTT 0.671232 -59 AGAGATTTGGTTTTTTTACCTTTTTTGTAATCTTAAAG 6 128 0 TTTTACCTTT 0.710515 -173 ACAAACACATTTTATTTACAAATTATTTTAAATATTCT 10 24 0 TTTTACATTT 0.943901 -81 ACGTATTCATTTTGAATACAATTTCATTGTAAACGCTA 12 233 0 TTTAACATTT 0.943901 -47 TTTTTAGTTTTTTATGAACACATTAGATTTAATAAAGG 14 132 0 TTTTACATTT 0.943901 -169 AACAAACTAACTTATTTTCATCTTATATAACCTCGTCA 14 185 0 CTTTTCATTT 0.671232 -116 TTCACCACTATTTAACCACACTTTCAATTTTGCTTCAA 15 67 0 TTTAACATTT 0.943901 -71 TGGAACACCATTTTAATACAGGTTTATTTTTTTCGTTT 17 42 1 TTTAACATTT 0.943901 -148 TTAAATTTTATTTAAAAACAATTTATTTAATTGTATAA 18 56 1 TTTAACATTT 0.943901 -128 TCCCTTTTTCTTTTTTGTCAACTTATGTTACAATGGAA 22 39 1 TTTTTCATTT 0.875526 -65 TTTACGAATTTTTGTCTACATGTTATATCAAACTATTT 29 81 1 TTTTACATTT 0.943901 -220 TAAAACAGCTTTTCAGTACAGGTTGGTTTAGGGTAAGA 35 186 0 TTTAACATTT 0.943901 -115 *** * *** ** * Masking position 13 Map Score: 10.4395 Number of sites scoring better than the average of aligned sites = 113 Number in coding regions = 75 Number in noncoding regions = 38 Number of orfs with sites within 600 bp upstream = 47 Fraction of orfs with sites within 600 bp upstream = 0.00754899 Motif number 10 ACAGCCTTTCCTGCTGTATAAAAGGACAGCGGC 4 83 0 CGCTGATAAA 0.648703 -119 ATAATGGCATAAGCTGATACATAGGAGGACGAA 8 108 1 AGCTGTAATA 0.685877 -24 AGAAGCATACAAGCTGCTAGAAGAAATCGAATA 9 161 1 AGCTGTAAAG 0.962789 -38 TCTATGCCAGATGTTGTTATAAATTGAAGCAAA 15 44 1 AGTTGTAAAA 0.719117 -94 CAAGAAGAAAACGCTGACAAAAAAGCCAGCTTC 16 28 0 AGCTGCAAAA 0.892082 -82 ATTGTAACATAAGTTGACAAAAAAGAAAAAGGG 22 40 0 AGTTGCAAAA 0.470141 -64 CCTCCAAATGATGCTGGTAAAAAACAGATTTTC 22 74 0 AGCTGTAAAA 0.959761 -30 GCTGGGAAAGAAGCTGATATAAGCGAGGGCAGG 23 104 0 AGCTGTAAAG 0.962789 -126 TCTCAAAACTGCTATAAGGAAGTGGAAC 24 6 1 AACTGTAAAG 0.594158 -25 AGCGCCGGCAAAGCTGCTTAAAACGCGGTCGTT 25 130 0 AGCTGTTAAA 0.931525 -171 ATCGAGGAAAAGGCTGAAACAAAGCTTGAAAAG 26 79 1 AGCTGAAAAA 0.884493 -186 GATACAAAAAAAGCTGGTGAAAGGCGGCCACCT 31 240 1 AGCTGTGAAG 0.843652 -61 TATGGGGGGACTGCTGGATGAAAGGTGGCCGCC 31 262 0 CGCTGATAAA 0.648703 -39 CATGGATGTACTGCTGGTTTAAGAATTTAATCA 34 80 0 CGCTGTTAAG 0.861869 -124 CTGTACTGAAAAGCTGTTTTAAGCTCTTGCTTA 35 203 1 AGCTGTTAAG 0.936538 -98 * **** ** *** Masking position 11 Map Score: 7.82408 Number of sites scoring better than the average of aligned sites = 678 Number in coding regions = 622 Number in noncoding regions = 56 Number of orfs with sites within 600 bp upstream = 59 Fraction of orfs with sites within 600 bp upstream = 0.00947639 Motif number 11 TTCCCATAGAGCGGGAAATTTCTCATTTGC 6 176 0 GCGGGAAATT 0.846022 -125 ATTCGAAAATGGGGGAATTTCAT 7 4 0 GGGGGAATTT 0.902951 -61 GAAAGAAAATGGGGGGATCTGAT 7 52 1 GGGGGGATCT 0.913526 -13 CGTGCCGAAAGGGGGAGATCTCAGGTTATC 8 49 1 GGGGGAGATC 0.958899 -83 GAAAGAGAGCGGGGGAAACCAGCATCTCAA 9 56 1 GGGGGAAACC 0.958899 -143 ATCGAATAAAGCGGGGGATTTTC 9 186 1 GCGGGGGATT 0.861851 -13 TTATTTTTAAGGGGGAAATCAC 14 289 1 GGGGGAAATC 0.93602 -12 TGCAGGTGCAGGAGGAGACTCTCGCAATCT 31 162 1 GGAGGAGACT 0.820316 -139 CTCCTTTTTATGGGGGGACTGCTGGATGAA 31 273 0 TGGGGGGACT 0.764735 -28 AAACGCAGATGGGGGAGTCTGGC 32 73 1 GGGGGAGTCT 0.95945 -13 ********** Masking position 5 Map Score: 4.22791 Number of sites scoring better than the average of aligned sites = 198 Number in coding regions = 128 Number in noncoding regions = 70 Number of orfs with sites within 600 bp upstream = 63 Fraction of orfs with sites within 600 bp upstream = 0.0101189 Motif number 12 AGGATACAAATCTTTCATATTGGGAGGGCAA 1 68 0 TTTTCATATT 0.841654 -151 GTACTTTTATTTTTTCATATACAAAAAACGC 4 49 0 TTTTCATATA 0.894952 -153 TAACCTTGTCTGTTTCATATATTCCAGACTA 5 67 1 TTTTCATATA 0.894952 -126 TTGGATGTTTTATATAAATGATTATA 6 6 1 TTTTTATATA 0.86394 -295 CCATTTTCTTTCTATTATATACAATTACAGA 7 33 0 TTATTATATA 0.714365 -32 CTTATGCCATTATTTTATATGAAGCGGGTGC 8 90 0 TTTTTATATG 0.861571 -42 AAATATTCTTTATATTATATTG 10 2 0 TTATTATATT 0.609984 -103 ATGAAAAAAGTCTTTTATATTCATAGTAGAA 12 51 0 TTTTTATATT 0.798419 -229 AGATGCATTTTATTTCATATAGTAAGTACAT 14 244 0 TTTTCATATA 0.892007 -57 AAACAGTTTTTTCATATGAACCTGTATT 17 8 1 TTTTCATATG 0.893137 -182 ACGCTTCCTATCTATTATATGTGCAGCTTTT 26 107 0 TTATTATATG 0.71264 -158 * ********* Masking position 7 Map Score: 4.02107 Number of sites scoring better than the average of aligned sites = 366 Number in coding regions = 269 Number in noncoding regions = 97 Number of orfs with sites within 600 bp upstream = 101 Fraction of orfs with sites within 600 bp upstream = 0.0162223 Motif number 13 GTATAGGGACTGTAAGCGTTTTAACATAGA 2 79 1 TGTAAGCGTT 0.880816 -94 CAGACTAGGATGAAAGCGCTATAAAAAAGT 5 91 1 TGAAAGCGCT 0.959466 -102 TAAATGGAATTGTAAACGTTATCAAGGAGG 6 274 1 TGTAAACGTT 0.837373 -27 AAAGGGCAAATGTAAACGGTTAAACTGGAA 11 144 1 TGTAAACGGT 0.785689 -95 ACAATTTCATTGTAAACGCTATTTTCGGTT 12 224 0 TGTAAACGCT 0.876754 -56 CACCTCCTAATGAAAACGTATTCATTTTGA 12 256 0 TGAAAACGTA 0.794465 -24 CTGGCTTTTTTGTCAGCGTTTTCTTCTTGA 16 32 1 TGTCAGCGTT 0.4838 -78 CGCTTCCTTATGAATACGCTTATGATAGTT 16 67 1 TGAATACGCT 0.56982 -43 GAAATAACAATGAAAACGCTTAACACAACT 17 111 1 TGAAAACGCT 0.942831 -79 TCATATATAATGAAAACGGATACAAATAAA 21 96 1 TGAAAACGGA 0.733485 -42 AGCGCTATAATGAAAGCGGACAAGGGAAGG 25 37 1 TGAAAGCGGA 0.797985 -264 ACCGGCTTTCAGAAAACGCTCTGTGATAGA 25 98 1 AGAAAACGCT 0.713329 -203 ACCCCTTCAAAGAAAACGCTTCCTATCTAT 26 123 0 AGAAAACGCT 0.713329 -142 TCATAAATCATGATAGCGTTTTCGTCAACT 29 131 0 TGATAGCGTT 0.594481 -170 TGATTTATGATGAAAGCGTATTCTTAATCT 29 151 1 TGAAAGCGTA 0.84728 -150 TGAGTGTTTATGAAAGCGATTTCATAATAT 30 52 1 TGAAAGCGAT 0.75432 -76 ACACCAAAAATGAAAGCGTTGACATCTCAC 31 49 1 TGAAAGCGTT 0.944852 -252 ********** Masking position 8 Map Score: 16.6694 Number of sites scoring better than the average of aligned sites = 337 Number in coding regions = 247 Number in noncoding regions = 90 Number of orfs with sites within 600 bp upstream = 116 Fraction of orfs with sites within 600 bp upstream = 0.0186315 Motif number 14 GCACTGTACTTTTATTTTTTCATATACAAA 4 55 0 TTTATTTTTT 0.741197 -147 GTCTGAGAGATTTGGTTTTTTTACCTTTTT 6 141 0 TTTGGTTTTT 0.770432 -160 TTTGATCAACTTTAGTGTTTTTTCCCATAG 6 197 0 TTTAGTGTTT 0.627779 -104 CTCCTTCCTTTTCAGTTTTTTGGGCACTCT 10 77 0 TTCAGTTTTT 0.770432 -28 TAACTTTTGATTTACTTTTTTGACAAAGGT 14 22 1 TTTACTTTTT 0.818292 -279 CAATATTTTTTTTAGTTTTTTATGAACACA 14 148 0 TTTAGTTTTT 0.920394 -153 TTAATACAGGTTTATTTTTTTCGTTTTAAG 17 54 1 TTTATTTTTT 0.741197 -136 TTGGCTCACGTTTATTTTTTGTGACATTCC 18 26 1 TTTATTTTTT 0.741197 -158 TTTGTTTATTTTTGCTTTTTAACAAAAAAA 21 43 0 TTTGCTTTTT 0.566567 -95 AACAGACGGTTTCACGTTTTTCGTGCTGTA 25 249 1 TTCACGTTTT 0.543155 -52 TTACGCAAATTTTAGGTCTTGCCTGCTTTA 29 203 0 TTTAGGTCTT 0.753236 -98 GTTGGCGAATTTTAGGTCTTTTTTGTTTAA 29 262 1 TTTAGGTCTT 0.753236 -39 ACCTGCACCATTTAGGTTTTGCCTGCTTTC 31 139 0 TTTAGGTTTT 0.913165 -162 ATCTGTGTCATTTAGGTTTTTTTATTCTCT 31 188 1 TTTAGGTTTT 0.913165 -113 ********** Masking position 2 Map Score: 6.43581 Number of sites scoring better than the average of aligned sites = 307 Number in coding regions = 241 Number in noncoding regions = 66 Number of orfs with sites within 600 bp upstream = 65 Fraction of orfs with sites within 600 bp upstream = 0.0104401 Motif number 15 AATATGTTCAGAGAATGATGCTTCCCTTTG 2 111 0 GAGAATGATG 0.843854 -62 GCAAAAGAACGAGAATGAACTTCCCGTTTT 11 80 0 GAGAATGAAC 0.713041 -159 AACAAATGGAGTGGATGAAGTGGATATCGC 14 59 0 GTGGATGAAG 0.857887 -242 TTAAATAGTGGTGAATGAAGGGATAACGGT 15 90 1 GTGAATGAAG 0.899709 -48 TGAAGTGAATGAGAAGGGAGAAAATACA 15 120 1 GAGAAGGGAG 0.914983 -18 GTTTCATAGGGAGGATGGAGATCCCTTTTC 18 102 1 GAGGATGGAG 0.936772 -82 TGTTGCTGAGGTGAATGGAGA 18 173 1 GTGAATGGAG 0.920316 -11 GCTGAGCATGGAGTTCGGCGGGA 32 4 1 GAGCATGGAG 0.936766 -82 GCAGGCGCTTGAGCAGGATGCAGGCCAT 34 186 1 GAGCAGGATG 0.639974 -18 ********** Masking position 5 Map Score: 2.48776 Number of sites scoring better than the average of aligned sites = 200 Number in coding regions = 174 Number in noncoding regions = 26 Number of orfs with sites within 600 bp upstream = 32 Fraction of orfs with sites within 600 bp upstream = 0.00513974