AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00061_bsub_reg_300.orf -o00061_bsub_300.ace -a/home/amcguire/alignace/lib/ORF_bsub.txt -z/skink1/amcguire/genomes/bsub.fna -g0.44 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.44 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 yhfB 125 similar to 3-oxoacyl- acyl-carrier protein synthase #2 yjaX 164 similar to 3-oxoacyl- acyl-carrier protein synthase #3 yjaY 22 similar to 3-oxoacyl- acyl-carrier protein synthase #4 yjbQ 234 similar to Na+/H+ antiporter #5 tenA 248 transcriptional regulator #6 yjbW 102 similar to enoyl- acyl-carrier protein reductase #7 yloU 276 similar to alkaline-shock protein #8 yloW 138 similar to phosphoglycerate dehydrogenase #9 ylpA 25 similar to L-serine dehydratase #10 ylpC 108 ylpC #11 mmgA 137 acetyl-CoA acetyltransferase #12 yqiK 78 similar to glycerophosphodiester phosphodiesterase #13 yqiH 300 alternate gene name: yzpA; similar to lipoprotein #14 accB 155 acetyl-CoA carboxylase subunit (biotin carboxyl carrier subunit) #15 spoIIIAC 22 spoIIIAC #16 spoIIIAA 75 spoIIIAA #17 yqhV 144 alternate gene name: yqgE #18 efp 24 elongation factor P #19 yqhS 86 similar to 3-dehydroquinate dehydratase #20 yqhR 226 yqhR #21 yttI 300 similar to acetyl-CoA carboxylase #22 yusL 267 similar to 3-hydroxyacyl-CoA dehydrogenase #23 yusM 300 similar to proline dehydrogenase Motif number 1 TATGAAAAAGAAAAAGGAGGCTGAAAA 1 6 0 AAAAAGAGCT 0.98789 -120 ATCTGGTACTAAAAAGAAGGTTTTTTACAAAA 1 61 0 AAAAAGAGTT 0.966543 -65 AATTTAAGATATAAAGGAGTCTTCCCTA 2 147 1 ATAAAGATCT 0.675473 -18 TATGTTTTTTAAAAATGAGGTTTTGTTCTCTG 4 169 1 AAAAATAGTT 0.839681 -66 ACCCTGACTTAAAAAGGAGGTTCTGATT 4 217 1 AAAAAGAGTT 0.966543 -18 GAATGAATGAAAAAAGAAGGCTGCGTCAAACA 11 37 0 AAAAAGAGCT 0.98789 -101 GAATGAGGGAAAAAAGCCCGCTAAACAAGCGG 14 11 1 AAAAAGCGCT 0.981848 -145 ACAGCAACGCAAAAAGCCCGCTTGTTTAGCGG 14 28 0 AAAAAGCGCT 0.981848 -128 TAACCTATAAAAAAAGAAATTTCATACATAGG 14 123 1 AAAAAGATTT 0.882186 -33 AAAGGAAAAAAGAAGTCTGTTCCCAAAT 17 7 1 AAAAAGATCT 0.954848 -138 TTGGGCACAAAAAAAGCCTGCTCCCATTTGGG 17 32 0 AAAAAGCGCT 0.981846 -113 CAGCGCATTCAAAAATAATGTT 21 1 0 AAAAATAGTT 0.839665 -300 CACGAAAAAGAAAAAGTATGCTTCCGTACCGT 21 244 1 AAAAAGAGCT 0.98789 -57 ACGAGAGAAAAAAAATCCGTCTTCAGCGGCAG 22 145 0 AAAAATCTCT 0.717692 -123 ****** * *** Masking position 5 Map Score: 24.3371 Number of sites scoring better than the average of aligned sites = 248 Number in coding regions = 187 Number in noncoding regions = 61 Number of orfs with sites within 600 bp upstream = 61 Fraction of orfs with sites within 600 bp upstream = 0.00979762 Motif number 2 TTTTCAGCCTCCTTTTTCTTTTTCAT 1 7 1 GCCTCCTTTT 0.98087 -119 ACGCCTCCTTTCCATATACCAT 2 3 1 GCCTCCTTTC 0.987918 -162 GCGGTCTCCTCCTTACCGATTGTTTT 4 7 1 TCCTCCTTAC 0.969662 -228 AATCAGAACCTCCTTTTTAAGTCAGGG 4 218 0 ACCTCCTTTT 0.888045 -17 ACTAGTTCCTCCTTCGAATGCATAGA 7 261 0 TCCTCCTTCG 0.954969 -16 GCTATTCCTCCTTATGAACCAGAGC 8 124 0 TCCTCCTTAT 0.952477 -15 AACTGGCTCCTCCTGACCCTTTTCG 9 9 0 TCCTCCTGAC 0.845842 -17 GCGTCAAACAGCCTCCTTCTAACAACTATT 11 17 0 GCCTCCTTCT 0.976901 -121 GTTTGACGCAGCCTTCTTTTTTCATTCATT 11 38 1 GCCTTCTTTT 0.786279 -100 CAGAGCCTCCTCCTTTCTACCGATTGG 16 59 0 TCCTCCTTTC 0.983853 -17 AATCTCAAATGCCGCCTTCCGTTATTTCGA 23 171 0 GCCGCCTTCC 0.920497 -130 TCCATTGTGATCCTCCTTTGGTTTCTGTTC 23 212 1 TCCTCCTTTG 0.962561 -89 ********** Masking position 7 Map Score: 17.9844 Number of sites scoring better than the average of aligned sites = 255 Number in coding regions = 102 Number in noncoding regions = 153 Number of orfs with sites within 600 bp upstream = 186 Fraction of orfs with sites within 600 bp upstream = 0.0298747 Motif number 3 ATAGGATAGAATTAGTACCTGATACTAATAATTGATCAC 2 90 1 ATAACCTTAT 0.873609 -75 CTAATAATTGATCACAACCTGATTGATCTTCTAAATTTA 2 114 1 ATAACCTTTT 0.946924 -51 CTTGTGTGCACCTCACCTTTTT 3 1 0 GTTACCTCCT 0.682346 -22 TCTAAACAGGATTAAGACCTTATCACTTTATTTTTCATC 4 108 1 ATAACCTTCT 0.986316 -127 AATCAGAACCTCCTTTTTAAGTCAGGGTTA 4 215 0 ATAACCTTTA 0.674042 -20 CCCTACGCAGGTCTGAACCTGTTCAAGTTATGAGGGTCT 5 124 0 GTTACCTTCT 0.861073 -125 TTCCTATCATATCATAACCTTGTCCAGATGAAAAGCGCA 6 53 0 ATAACCTTCT 0.984772 -50 AGTATTAGTACCTGATCTTAATTCCTATCATA 6 81 0 ATAACCTTCT 0.983596 -22 ATATACTACTATTAGTACCTAGTCTTAATTGTCCGGATG 10 70 1 ATAACCTTCT 0.983596 -39 ATGACCACCTCTTCCTGATGTTTGGCTTT 13 282 0 ATAACCTTCT 0.986306 -19 ACCTTGTCGTTTCAACACCTTATCTGATTTCATACAAGC 21 36 1 TTAACCTTCT 0.910249 -265 CCTTTAACAAATGATTACCTCCCTTTTGTGAAGGGTTCT 21 198 0 ATAACCTCTT 0.860874 -103 ** * **** ** * Masking position 7 Map Score: 12.2059 Number of sites scoring better than the average of aligned sites = 75 Number in coding regions = 58 Number in noncoding regions = 17 Number of orfs with sites within 600 bp upstream = 19 Fraction of orfs with sites within 600 bp upstream = 0.00305172 Motif number 4 AGTGTAGATAGGAATCTATGAAAAAGAAAAAG 1 22 0 GGAACTATAA 0.856871 -104 AATTCAATATGTATTCGTTTAACCACTAGGGG 5 55 1 GTATCGTTAA 0.803364 -194 CTTTCGATATGGATACTTTAAATAATTTACCA 7 71 1 GGATCTTTAA 0.937427 -206 CTATTCTTATGTCTGCTTTTAAGTGCGGCAGC 8 28 1 GTCTCTTTAA 0.929471 -111 GAAAAAAGAAGGCTGCGTCAAACAGCCTCCTT 11 29 0 GGCTCGTCAA 0.603759 -109 TTCTATGAATGTATGCTTTGAAACGGGCATGA 11 67 0 GTATCTTTAA 0.928227 -71 ATTTCTAGTTGTCTTCTATGAATGTATGCTTT 11 80 0 GTCTCTATAA 0.859173 -58 TCAGCCAAGCGTAACCTTTTAAAGGATATT 13 9 0 GTAACTTTAA 0.917787 -292 ACTTTTAGTAGTAACCTATAAAAAAAGAAATT 14 112 1 GTAACTATAA 0.837876 -44 TCTACCGATTGGCTTCTTTAAAATGTATGATG 16 39 0 GGCTCTTTAA 0.938522 -37 AGTCGAACCGGAAATCTTTTAAG 22 255 1 GAAACTTTAA 0.666732 -13 CCAGTCTGAAGGAAACTATAAAATGAACAGAA 23 234 0 GGAACTATAA 0.856872 -67 CCCTCCCGCCGTCATCTTCAAAACACCTGTAT 23 273 0 GTCACTTCAA 0.782321 -28 **** **** ** Masking position 11 Map Score: 8.32676 Number of sites scoring better than the average of aligned sites = 156 Number in coding regions = 138 Number in noncoding regions = 18 Number of orfs with sites within 600 bp upstream = 21 Fraction of orfs with sites within 600 bp upstream = 0.00337295 Motif number 5 CCTTGTCCAGATGAAAAGCGCATACCGTAG 6 45 0 ATGAAAAGCG 0.894235 -58 GGACAAGGTTATGATATGATAGGAATTAAG 6 67 1 ATGATATGAT 0.656151 -36 GGTTTCCATTATGAAAAGACCAGGCAATAA 7 210 0 ATGAAAAGAC 0.626333 -67 CAGATATAAAATGGCAAGCGGGCGCGTTAC 8 63 0 ATGGCAAGCG 0.815793 -76 GGCAGACTTTATGACAAGCCTCTCT 16 6 0 ATGACAAGCC 0.940675 -70 TTTAAAATGTATGATGTGAGGCAGACTTTA 16 25 0 ATGATGTGAG 0.565406 -51 TTATACGGAAATGACAAGACTACTTCAGCA 17 80 1 ATGACAAGAC 0.83645 -65 ATTTTTTTATATGATATGCTCTAGCTTGCT 17 106 0 ATGATATGCT 0.855571 -39 TTTTTATTCGATGACGTGCTCGGAAAGGCT 21 72 0 ATGACGTGCT 0.862337 -229 TATCTGTTTGATGACATGCGGTGAAGAGAA 21 172 1 ATGACATGCG 0.972613 -129 CTGCTGCGCCATGAAATGCGCTTTTTTCAT 23 91 1 ATGAAATGCG 0.920883 -210 TTGTATCTCAATGACATGCTGAACTGGAAT 23 130 0 ATGACATGCT 0.947575 -171 ********** Masking position 1 Map Score: 7.90884 Number of sites scoring better than the average of aligned sites = 436 Number in coding regions = 393 Number in noncoding regions = 43 Number of orfs with sites within 600 bp upstream = 48 Fraction of orfs with sites within 600 bp upstream = 0.0077096 Motif number 6 TAGTATATGTAGAGGTACGGCCAGCGATTAT 7 183 1 AGGGTACGGC 0.723074 -94 TCGAATGCATAGAGTTACAGCTATTCTACTA 7 243 0 AGGTTACAGC 0.956128 -34 GGCAAGCGGGCGCGTTACAGCGCTGCCGCAC 8 50 0 CGGTTACAGC 0.854026 -89 CTCATTCAGAAGATAGACAGCGCTTACAATT 11 109 0 AGTAGACAGC 0.666188 -29 GCTCCACTCTAGGATTAAGGCTGTATCAAT 12 10 0 AGATTAAGGC 0.758962 -69 GTGAGCAAATCGTTTGACGGGTGGGTCAGCC 13 35 0 CGTTGACGGG 0.539165 -266 ATTCAACTCTAATATGACAGCAACGCAAAAA 14 45 0 AAATGACAGC 0.875124 -111 CCTGTACAATAGAGTGAAAGGAAATGGTTAG 20 41 0 AGGTGAAAGG 0.711072 -186 CTAAACCTCTAGATTGACAGGCTGAAAAAAT 20 80 1 AGTTGACAGG 0.841427 -147 TGAAACGACAAGGTTGACAGCGCATTCAAAA 21 19 0 AGTTGACAGC 0.953001 -282 TGTCGAATTGAGGATGACAGCGTTTGACAAA 21 104 1 AGATGACAGC 0.967412 -197 GGTCCGACTCAGCATTACGGCGGCGGAAAAC 22 85 0 AGATTACGGC 0.930256 -183 ACTATCAAAGAATATTAAAGCA 23 2 0 AAATTAAAGC 0.47507 -299 GCCAGGATCAAACGTTAAAGCAAGAACTCGA 23 59 0 AAGTTAAAGC 0.548434 -242 AGGTGTTTTGAAGATGACGGCGGGAGGGAGT 23 277 1 AAATGACGGC 0.85198 -24 ** ******** Masking position 7 Map Score: 7.32283 Number of sites scoring better than the average of aligned sites = 1114 Number in coding regions = 1024 Number in noncoding regions = 90 Number of orfs with sites within 600 bp upstream = 79 Fraction of orfs with sites within 600 bp upstream = 0.0126887 Motif number 7 GAATCACTCCTTATGGTCAGATTATAACACT 1 103 0 TTATGGTCAA 0.919074 -23 TCTATCCTATTTTTTTTCACATGGCAATATA 2 69 0 TTTTTTTCAA 0.82131 -96 TCACAAGCTTTTATGTGCAAATTATAGAAGA 4 67 1 TTATGTGCAA 0.889051 -168 AGTGGTTTTTTTATTTTCAGAGGGGGAATGA 5 225 1 TTATTTTCAA 0.758422 -24 AAAGTAGATGTTTTGTGCAAGTGAGGAGGGA 7 16 0 TTTTGTGCAG 0.709858 -261 AAATTCTCCATTCTGGTCAAAGATAAAAGCC 13 257 1 TTCTGGTCAA 0.836497 -44 AAGATTCTGTTTTTGGGCACAAAAAAAGCCT 17 45 0 TTTTGGGCAA 0.957106 -100 ATTATACCCGTTATTTTCAAATTTTACTCGC 20 138 1 TTATTTTCAA 0.758422 -89 AAGCTCACACTTTTTGGCAGCTGCGAGTAAA 20 160 0 TTTTTGGCAC 0.709858 -67 ACATTTCATTTTTTGGGCACACTTTAACTGG 20 199 1 TTTTGGGCAA 0.957106 -28 TATTGTACTTTTTTTGTCAAACGCTGTCATC 21 116 0 TTTTTGTCAA 0.897351 -185 ********* * Masking position 9 Map Score: 3.87614 Number of sites scoring better than the average of aligned sites = 279 Number in coding regions = 225 Number in noncoding regions = 54 Number of orfs with sites within 600 bp upstream = 66 Fraction of orfs with sites within 600 bp upstream = 0.0106007 Motif number 8 ATCTACACTTCTCTTTTTTTGTAAAAAACCTTCT 1 45 1 CTCTTTTTAA 0.683552 -81 TAAGGTCTTAATCCTGTTTAGAAAATGATTCTTC 4 96 0 ATCCTTTTAA 0.792056 -139 TTTTCATCATCACCCTTGTTAAAATCGCGTTATG 4 139 1 CACCCTGTAA 0.898937 -96 AGAACAAAACCTCATTTTTAAAAAACATAACGCG 4 164 0 CTCATTTTAA 0.683552 -71 AATTGTTCTGCACCTCTATATTAACACGAATCCT 5 25 0 CACCTTATAA 0.794836 -224 GGTTTCACCTCATTCAGAAGATAGACAGC 11 119 0 CACCTATTAA 0.740025 -19 ACGATTTGCTCACCCTATTCTCAAATTTTTTAAA 13 53 1 CACCCATTAA 0.743629 -248 ACAATCGCACTCCTATGTATGAAATTTCTTTTT 14 133 0 CTCCTTGTAA 0.94963 -23 AAAAAGCCTGCTCCCATTTGGGAACAGACTTCTT 17 20 0 CTCCCTTTAA 0.967765 -125 CTCTCCCAACCTCCCATTTTTTTATATGATATGC 17 117 0 CTCCCTTTTA 0.765509 -28 GTTTAATGTCCTCCTATATTCCAA 18 1 0 CTCCTTATAA 0.893259 -24 AAATGATTACCTCCCTTTTGTGAAGGGTTCTCTT 21 195 0 CTCCCTTTAA 0.96843 -106 GATACAAATGATCCTTTGTCGAAATAACGGAAGG 23 153 1 ATCCTTGTAA 0.704637 -148 ***** *** ** Masking position 14 Map Score: 6.02001 Number of sites scoring better than the average of aligned sites = 400 Number in coding regions = 283 Number in noncoding regions = 117 Number of orfs with sites within 600 bp upstream = 151 Fraction of orfs with sites within 600 bp upstream = 0.0242531 Motif number 9 CTTGTGTGCACCTCACCTTTTT 3 8 0 GTGCACCTCA 0.856905 -15 AAAAAAACCACTTTCCCGCAAGGAAAAGTG 5 207 0 CTTTCCCGCA 0.864813 -42 TTGTTTCCCTCCTCACTTGCAC 7 3 1 GTTTCCCTCC 0.893646 -274 GGTTTCACCTCATTCAGAAGAT 11 126 0 TTTCACCTCA 0.932899 -12 CGTTTCACCTCAAACCCTAAAG 12 67 0 TTTCACCTCA 0.932899 -12 TAGCGGGCTTTTTTCCCTCATTC 14 4 0 TTTTCCCTCA 0.904413 -152 TTTATTTTTGCTCCCCTCACGT 15 4 0 GCTCCCCTCA 0.90521 -19 GAAGGGTTCTCTTCACCGCATGTCATCAAA 21 178 0 CTTCACCGCA 0.903846 -123 GTACCATTCCCTTCACCTCCGGGCTTAAGT 22 175 1 CTTCACCTCC 0.903846 -93 TCATTTTATAGTTTCCTTCAGACTGGGAGT 23 240 1 GTTTCCTTCA 0.630628 -61 ********** Masking position 6 Map Score: 3.45678 Number of sites scoring better than the average of aligned sites = 317 Number in coding regions = 229 Number in noncoding regions = 88 Number of orfs with sites within 600 bp upstream = 90 Fraction of orfs with sites within 600 bp upstream = 0.0144555 Motif number 10 AGGTTTTTTACAAAAAAAGAGAAGTGTAGAT 1 45 0 CAAAAAAAGG 0.902014 -81 ATCTTGACCAAATAAGGATTCGTGTTAA 5 8 1 CCAAATAAGA 0.788161 -241 GTGGAGCCGACAAAATAAGTATAATGGAGAA 12 34 1 CAAAATAAGA 0.946923 -45 TAGTAACCTATAAAAAAAGAAATTTCATACA 14 120 1 TAAAAAAAGA 0.774888 -36 TTTTTGGGCACAAAAAAAGCCTGCTCCCATT 17 36 0 CAAAAAAAGC 0.902014 -109 TTTTTGTGCCCAAAAACAGAATCTTTCTTTT 17 51 1 CAAAAACAGA 0.944262 -94 AAAGTGTGCCCAAAAAATGAAATGTCAATAA 20 193 0 CAAAAAATGA 0.847186 -34 CAGCGTTTGACAAAAAAAGTACAATAGTTTC 21 121 1 CAAAAAAAGA 0.975247 -180 ACGGACAAGTCAAAATCAGCAGTATAAAAAA 22 56 0 CAAAATCAGA 0.884674 -212 AGGCTTCATACAAAAAAATAACAAATTAGCT 22 219 1 CAAAAAAATA 0.774888 -49 ********* * Masking position 5 Map Score: 4.78302 Number of sites scoring better than the average of aligned sites = 552 Number in coding regions = 415 Number in noncoding regions = 137 Number of orfs with sites within 600 bp upstream = 141 Fraction of orfs with sites within 600 bp upstream = 0.022647 Motif number 11 CTCTTTTTTTGTAAAAAACCTTCTTTTTAGTA 1 55 1 GAAAAAACTT 0.714477 -71 TTTCCCGCAAGGAAAAGTGGTTTGGAATTGGC 5 194 0 GAAAAGTGTT 0.76612 -55 TTTACCACAGCTAAAAAACGTTTGCAACTATT 7 96 1 CAAAAAAGTT 0.735073 -181 GAAAGATGATGAAACAATAGTTGCAAACGTTT 7 111 0 GAACAATGTT 0.888665 -166 GTATCAGAAGTTTTTGGTGTTC 10 1 1 GATCAGAGTT 0.866169 -108 TGTTCAGCCAGAAACAATCGTTGCATTCCAAT 10 28 1 GAACAATGTT 0.888665 -81 TTTTTAAAATGAATAAAAAGTTGCTTCTTTCC 13 79 1 GATAAAAGTT 0.947456 -222 TTTTCCAGTATGATAAAATGTTCACGAGAAGT 19 21 1 TATAAAAGTT 0.611708 -66 GGTTTCTCATGTAAAAAATGTTCACTTCTCGT 19 44 0 GAAAAAAGTT 0.955412 -43 GCACGTCATCGAATAAAAAGTTGTCGAATTGA 21 83 1 GATAAAAGTT 0.947456 -218 AGCAGTGCCAGGATCAAACGTTAAAGCAAGAA 23 64 0 GATCAAAGTT 0.944019 -237 * ****** *** Masking position 6 Map Score: 4.14183 Number of sites scoring better than the average of aligned sites = 350 Number in coding regions = 301 Number in noncoding regions = 49 Number of orfs with sites within 600 bp upstream = 56 Fraction of orfs with sites within 600 bp upstream = 0.00899454 Motif number 12 ATATACTATAGCGCTGCTGTTTCCGCAAGA 7 161 0 GCGCTGCTGT 0.978277 -116 GCGCGTTACAGCGCTGCCGCACTTAAAAGC 8 42 0 GCGCTGCCGC 0.986104 -97 CAGCGCTGTAACGCGCCCGCTTGCCATTTT 8 56 1 ACGCGCCCGC 0.843379 -83 CATGGAACTTGCTCGCCTGCATTCGCGTTG 13 220 1 GCTCGCCTGC 0.852753 -81 CGGGCTTTTTGCGTTGCTGTCATATTAGAG 14 40 1 GCGTTGCTGT 0.815407 -116 ATTCACAAGTCCGCTCCTGTAAGATGAACA 14 74 1 CCGCTCCTGT 0.934527 -82 CAGCTGCTTCCCACGGCTGCTT 22 3 0 CCACGGCTGC 0.924179 -265 TGTCCGTTTTCCGCCGCCGTAATGCTGAGT 22 80 1 CCGCCGCCGT 0.893023 -188 TTTGATCCTGGCACTGCTGCGCCATGAAAT 23 78 1 GCACTGCTGC 0.952837 -223 ********** Masking position 7 Map Score: 3.78431 Number of sites scoring better than the average of aligned sites = 1023 Number in coding regions = 967 Number in noncoding regions = 56 Number of orfs with sites within 600 bp upstream = 37 Fraction of orfs with sites within 600 bp upstream = 0.00594282 Motif number 13 TTTTCAGCCTCCTTTTTCTTTTTCATA 1 8 1 CCTCCTTTTT 0.896763 -118 TGTGTGCACCTCACCTTTTT 3 1 0 TCACCTTTTT 0.882335 -22 TTTTTCATCATCACCCTTGTTAAAATCGCG 4 138 1 TCACCCTTGT 0.808413 -97 GAGAACAAAACCTCATTTTTAAAAAACATA 4 169 0 CCTCATTTTT 0.692483 -66 AATCAGAACCTCCTTTTTAAGTCAGGGT 4 217 0 CCTCCTTTTT 0.896763 -18 GGTCTAAAAGTCACACTTTTATCTCAGCCC 5 99 0 TCACACTTTT 0.882335 -150 TGGCTCCTCCTGACCCTTTTCG 9 3 0 TGACCCTTTT 0.72297 -23 AACGATTTGCTCACCCTATTCTCAAATTTT 13 52 1 TCACCCTATT 0.740056 -249 AAAAAAGCCTGCTCCCATTTGGGAACAGAC 17 25 0 GCTCCCATTT 0.726272 -120 ACTCTCCCAACCTCCCATTTTTTTATATGA 17 122 0 CCTCCCATTT 0.862786 -23 ATAAAAAAGCTCACACTTTTTGGCAGCTGC 20 167 0 TCACACTTTT 0.882335 -60 CATTTTTTGGGCACACTTTAACTGGAGGTG 20 205 1 GCACACTTTA 0.40752 -22 CAAATGATTACCTCCCTTTTGTGAAGGGTT 21 200 0 CCTCCCTTTT 0.971021 -101 CGGACCGGCATCTCCCTTTACGCTCGCCGC 22 110 1 TCTCCCTTTA 0.844432 -158 ********** Masking position 4 Map Score: 9.23309 Number of sites scoring better than the average of aligned sites = 987 Number in coding regions = 660 Number in noncoding regions = 327 Number of orfs with sites within 600 bp upstream = 386 Fraction of orfs with sites within 600 bp upstream = 0.0619981 Motif number 14 CCAGATGAAAAGCGCATACCGTAGCAAACG 6 39 0 AGCGCATACC 0.982139 -64 AGAGCTTATTAGCGCTTTGCTTCTAGACTA 8 99 0 AGCGCTTTGC 0.916624 -40 GAAGATAGACAGCGCTTACAATTTCTAGTT 11 102 0 AGCGCTTACA 0.908745 -36 TCAGCAAGCTAGAGCATATCATATAAAAAA 17 104 1 AGAGCATATC 0.790596 -41 CAAGGTTGACAGCGCATTCAAAAATAATGT 21 12 0 AGCGCATTCA 0.948928 -289 CGATGAAAAAAGCGCATTTCATGGCGCAGC 23 93 0 AGCGCATTTC 0.960637 -208 ********** Masking position 7 Map Score: 0.0579435 Number of sites scoring better than the average of aligned sites = 123 Number in coding regions = 108 Number in noncoding regions = 15 Number of orfs with sites within 600 bp upstream = 19 Fraction of orfs with sites within 600 bp upstream = 0.00305172 Motif number 15 ********** No masking Map Score: -1.18352e-11 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0