AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00272_bsub_reg_100.orf -o00272_bsub_100.ace -a/home/amcguire/alignace/lib/ORF_bsub.txt -z/skink1/amcguire/genomes/bsub.fna -g0.44 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.44 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 yacB 194 similar to hypothetical proteins #2 yacC 85 similar to hypothetical proteins #3 yacD 46 similar to protein secretion PrsA homolog #4 cysK 75 cysteine synthetase A #5 cysE 300 serine acetyltransferase #6 lctE 176 L-lactate dehydrogenase #7 yjcI 300 similar to cystathionine gamma-synthase #8 ykrV 94 similar to aspartate aminotransferase #9 yloW 138 similar to phosphoglycerate dehydrogenase #10 ylpA 25 similar to L-serine dehydratase #11 aspB 22 aspartate aminotransferase #12 ypmA 142 ypmA #13 ypcA 155 similar to glutamate dehydrogenase #14 yrhA 64 similar to cysteine synthase #15 yrrT 192 yrrT #16 ytkP 148 similar to cysteine synthase #17 yugG 147 similar to transcriptional regulator (Lrp/AsnC family) #18 ywfB 151 alternate gene name: ipa-80d #19 yweB 176 alternate gene name: ipa-75d; similar to glutamate dehydrogenase Motif number 1 CCTCTATCACCACTTTTGAATAGTTTCT 1 177 0 TTCACTTTTG 0.9482 -18 ACCTGCTTTCAGCCCCTTTTCTCAAATTAA 3 27 0 TTCACCTTTT 0.9482 -20 AATCTATCAATTTCAAAATTTTTTGTCAA 4 6 0 TTCATTTTTT 0.978506 -70 TATGTTTCTCTTTGATGTCTTTTTGTTTGTGAAG 6 136 0 TTGACTTTTT 0.808291 -41 TCACAGTTTATTTCAACACTTTTTTCTTCGTGTG 7 48 0 TTCACTTTTT 0.982866 -253 ACCCCAAATTTTTCTTTACTTTTTTCATTTAACC 8 20 1 TTCTCTTTTT 0.830744 -75 TGGACTATCATTTCAAGATTTTTTTAGAAGGTGA 8 65 1 TTCATTTTTT 0.978506 -30 AAACTGCTGATTTCAGCAGTTTTTTTTCGTTAAA 13 23 1 TTCAGTTTTT 0.962193 -133 ACGTTATGTTTTTCCATGTTTTTTAACGAAAAAA 13 44 0 TTCCTTTTTT 0.939306 -112 GGGAGAACGTTCTCCTCCGTTTTTCTCTAAAAAC 14 15 1 TTCCGTTTTT 0.896393 -50 TCATATGAAGTATAAGCTTTTTTGCGGTCAATGC 15 36 1 TTAATTTTTG 0.559548 -157 TGTCATTCCTTTCTGAATAAAACA 16 135 0 TTCACTTTCT 0.85881 -14 TCTGTGTCACTCCCTTTTTTTGATGGTT 17 5 1 TTCACCTTTT 0.9482 -143 AGCGGAAGTTTCTCCTCGTTTTTTCTTAGCATTC 17 66 1 TTCCTTTTTT 0.939306 -82 CATGACATTATATCACGTTTTTTGACGAATGCTA 17 92 0 TTCATTTTTG 0.935597 -56 AAAAACCCTTTTTAAAGGGTTTTTTTGTTTGTAT 18 36 1 TTAAGTTTTT 0.689979 -116 GAAATTGAACTGTCAATGTTTTTTGAAAATATTG 18 82 0 TTCATTTTTT 0.978506 -70 ACTGAGATGTTTTCAGTCTCTTTTTTTGTGGATT 19 32 1 TTCATCTTTT 0.935597 -145 CTTTTTCACCTCATTGTTTTTTTGGCCGGCTG 19 155 0 CTCATTTTTT 0.828394 -22 * *** ****** Masking position 11 Map Score: 25.3866 Number of sites scoring better than the average of aligned sites = 780 Number in coding regions = 595 Number in noncoding regions = 185 Number of orfs with sites within 600 bp upstream = 210 Fraction of orfs with sites within 600 bp upstream = 0.0337295 Motif number 2 AGCGTCAGCCGGCAGTTTTTTTAGAAAGAAAGC 1 14 0 GGCGTTTTTA 0.97008 -181 GGCTGACGCTGGCAGTTTTTTTATGTAAATGAT 1 37 1 GGCGTTTTTA 0.97008 -158 TTGGCTCAGCTGCGGCTTTTACAATCATCCAAT 1 69 1 TGCGCTTTTA 0.878254 -126 GCTCTTTAGCGGGTTTTTAATTTGAGAAAA 3 8 1 AGCGGTTTTA 0.933213 -39 AGATCCATGAGCCGGGTTTTAGAAGTGCGCCCT 5 81 1 GCCGGTTTTA 0.892663 -220 TAACGGCGGCGGCCGCCTTTGAATACTGATTTC 5 138 0 GGCGCCTTTA 0.911262 -163 GAGAGCAGAAGTCTGCTTTTCAAACAGAGTGGA 5 185 1 GTCGCTTTTA 0.938411 -116 CATCAATGATGGTTTCTTTTTTGTTCATAAATC 6 44 1 GGTTCTTTTG 0.423814 -133 CTCAGCAACCGGCTTGTTTTGCATTTGCAAAGC 7 162 1 GGCTGTTTTA 0.809319 -139 AAATCCAGCAAGCGTTTTTTATGCTTGGAAGAT 7 206 1 AGCTTTTTTG 0.567038 -95 CTATTCTTATGTCTGCTTTTAAGTGCGGCAGCG 9 28 1 GTCGCTTTTG 0.912901 -111 AGCCGCATAAAGCGGCTTTTGCGGTGTGGGAGT 12 12 1 AGCGCTTTTG 0.965145 -131 AGAGCGGGAAATCCGCTTTTAAATAAAACACCA 12 49 0 ATCGCTTTTA 0.870118 -94 TGCTGATTTCAGCAGTTTTTTTTCGTTAAAAAA 13 27 1 AGCGTTTTTT 0.602707 -129 CCTTAATAGAGGTTGTTTTTAGAGAAAAACGGA 14 30 0 GGTGTTTTTA 0.739267 -35 GTGTTTTAGTACCTGCTTTTCAGAATATGTGGT 15 99 1 ACCGCTTTTG 0.878733 -94 CAAGATCCGTACCAGCTTTTGAATCCACAAAAA 19 54 0 ACCGCTTTTA 0.913301 -123 GGAATTGGCGGGCTGATTTTTTAAAGCGCTTAC 19 118 1 GGCGATTTTA 0.888874 -59 *** ****** * Masking position 8 Map Score: 17.8444 Number of sites scoring better than the average of aligned sites = 1859 Number in coding regions = 1620 Number in noncoding regions = 239 Number of orfs with sites within 600 bp upstream = 173 Fraction of orfs with sites within 600 bp upstream = 0.0277867 Motif number 3 CTTAACCCTAAAAGGGCTGGAATTGATTTAT 2 27 1 AAGGGCTGGA 0.952185 -59 AATTTGAGAAAAGGGGCTGAAAGCAGGT 3 29 1 AAGGGCTGAA 0.945027 -18 CAGATAGAGAAACGGGGGGAAGCAT 5 286 1 AAGGGGGGAA 0.975949 -15 CGAAAAGGGTCAGGAGGAGCCAGTT 10 5 1 AAGGTCAGGA 0.773181 -21 GACGAATTAGGGGGAGTTCAAG 11 5 1 AATAGGGGGA 0.678169 -18 TACTAGTATCACAGAGCGGGAAATCCGCTTT 12 63 0 ACGAGCGGGA 0.838895 -80 AACGGGGAGAACGTTCTCCTC 14 1 1 AAGGGGAGAA 0.976414 -64 TTAGAGAAAAACGGAGGAGAACGTTCTCCCC 14 14 0 ACGAGGAGAA 0.89964 -51 AACCTCTATTAAGGAGGAGGACATAT 14 49 1 AAGAGGAGGA 0.967702 -16 GCTAAGAAAAAACGAGGAGAAACTTCCGCTA 17 65 0 AAGAGGAGAA 0.962777 -83 TTGACATTGCAAAGGTGTGAATCAA 17 133 1 AAGGTGTGAA 0.823593 -15 CCAAAAAAACAATGAGGTGAAAAAG 19 162 1 AAGAGGTGAA 0.954533 -15 ** ******** Masking position 1 Map Score: 13.1641 Number of sites scoring better than the average of aligned sites = 468 Number in coding regions = 308 Number in noncoding regions = 160 Number of orfs with sites within 600 bp upstream = 185 Fraction of orfs with sites within 600 bp upstream = 0.0297141 Motif number 4 CTTTTTAACACCCCAAATTTTTCTTTACT 8 4 1 TTACCCCAAT 0.908055 -91 GCGGCAGCGCTGTAACGCGCCCGCTTGCCATTTTAT 9 52 1 TTACCCCCGT 0.98427 -87 CTTGAACTCCCCCTAATTCGTC 11 6 0 TGACCCCCTT 0.987979 -17 TACTCCATTTCAGGACACGCCATACTAGTATCACAG 12 80 0 CGACCCCATT 0.951878 -63 TTTTTCATCCTCCAGTTTGAACAAATAT 12 125 0 TTATCCCAGT 0.906713 -18 TTTCAGAGAATAGTATACACCTTCATATGATCTGTG 13 88 0 TGATCCCTTT 0.75901 -68 GTCTTGACCCTCCAGCTTTCACAAGTCA 15 3 1 CTACCCCAGT 0.937732 -190 ATTTGTCACACTCCATATTTAATAATTCC 15 174 0 TTACCCCATT 0.982178 -19 CCGTCTGACACTCCCTTCTTTGACAGCTA 16 4 1 TTACCCCCTT 0.988749 -145 TCTGTGTCACTCCCTTTTTTTGATGGTT 17 3 1 TTTCCCCCTT 0.917808 -145 CCTTTCTTCATTGGATTCACCCTTATCATCATGCAA 19 84 0 TGATCCCCTT 0.953181 -93 * * ** * **** * Masking position 16 Map Score: 9.62373 Number of sites scoring better than the average of aligned sites = 83 Number in coding regions = 56 Number in noncoding regions = 27 Number of orfs with sites within 600 bp upstream = 37 Fraction of orfs with sites within 600 bp upstream = 0.00594282 Motif number 5 ATGAGCCGCTGATCGTGTATGGTATTGTAG 1 124 1 GATCGTGTAT 0.660634 -71 GACCTTTGAAGAACGTTTTTTGAAATCAGT 5 117 1 GAACGTTTTT 0.825837 -184 AACCATCATTGATGGTTTCTTTCGGTAAGT 6 28 0 GATGGTTTCT 0.906342 -149 AACCATCAATGATGGTTTCTTTTTTGTTCA 6 41 1 GATGGTTTCT 0.906342 -136 TTCATAAGAAGAAGGGGTTTAACGCTTCTT 7 242 0 GAAGGGGTTT 0.972522 -59 TTCTTATGAAGAAGGGGTTTTTATTTTGAA 7 262 1 GAAGGGGTTT 0.972522 -39 TTTGAAAAGGGAAGGTGTCAGCTAT 7 286 1 GAAGGTGTCA 0.79865 -15 GTGGGAGTAGGATGGTGTTTTATTTAAAAG 12 37 1 GATGGTGTTT 0.957108 -106 CAGATCATATGAAGGTGTATACTATTCTCT 13 90 1 GAAGGTGTAT 0.932682 -66 AACCCTTTAAAAAGGGTTTTTAATTATAGG 18 27 0 AAAGGGTTTT 0.741392 -125 AACCCTTTTTAAAGGGTTTTTTTGTTTGTA 18 39 1 AAAGGGTTTT 0.741392 -113 ********** Masking position 2 Map Score: 7.52216 Number of sites scoring better than the average of aligned sites = 403 Number in coding regions = 334 Number in noncoding regions = 69 Number of orfs with sites within 600 bp upstream = 71 Fraction of orfs with sites within 600 bp upstream = 0.0114038 Motif number 6 TACTAAACCTCCTATACACTTC 2 74 0 CTAAACCTCC 0.744224 -12 GCTATTCCTCCTTATGAACCA 9 128 0 CTATTCCTCC 0.715232 -11 ATAAAACACCATCCTACTCCCACACCGCAA 12 30 0 ATCCTACTCC 0.702681 -113 AATATTGTTAGTCATACTCCATTTCAGGAC 12 100 0 GTCATACTCC 0.962393 -43 TTTTTCATCCTCCAGTTTGAACA 12 130 0 TTCATCCTCC 0.928219 -13 TTGAGTTAACCTCCTAGAATCTTC 13 142 0 GTTAACCTCC 0.849534 -14 CGGGGAGAACGTTCTCCTCCGTTTTTCTCT 14 13 1 GTTCTCCTCC 0.916535 -52 ATATGTCCTCCTCCTTAATAGAGG 14 51 0 GTCCTCCTCC 0.97576 -14 GTCTTGACCCTCCAGCTTTCACA 15 4 1 TTGACCCTCC 0.895953 -189 ATTTGTCACACTCCATATTTAATA 15 179 0 GTCACACTCC 0.965187 -14 CCGTCTGACACTCCCTTCTTTGAC 16 5 1 CTGACACTCC 0.897772 -144 TCTGTGTCACTCCCTTTTTTTGA 17 4 1 GTGTCACTCC 0.843385 -144 ********** Masking position 8 Map Score: 6.2838 Number of sites scoring better than the average of aligned sites = 399 Number in coding regions = 262 Number in noncoding regions = 137 Number of orfs with sites within 600 bp upstream = 125 Fraction of orfs with sites within 600 bp upstream = 0.0200771 Motif number 7 AGATAGAGAAACGGGGGGAAGCAT 5 287 1 ACGGGGGGAA 0.956623 -14 TCCACCTCTCACGATAAGAAATATCGATTT 7 113 0 ACGATAAGAA 0.845757 -188 TTATGCTTGGAAGATAAGAAGAAGCGTTAA 7 224 1 AAGATAAGAA 0.726393 -77 ATTTTTTTAGAAGGTGAGAATAG 8 82 1 AAGGTGAGAA 0.948483 -13 AACGGGGAGAACGTTCTCCTC 14 2 1 ACGGGGAGAA 0.98369 -63 CTAAGAAAAAACGAGGAGAAACTTCCGCTA 17 65 0 ACGAGGAGAA 0.974375 -83 TGACATTGCAAAGGTGTGAATCAA 17 134 1 AAGGTGTGAA 0.889004 -14 CAAAAAAACAATGAGGTGAAAAAG 19 163 1 ATGAGGTGAA 0.760183 -14 ********** Masking position 9 Map Score: 3.66638 Number of sites scoring better than the average of aligned sites = 235 Number in coding regions = 174 Number in noncoding regions = 61 Number of orfs with sites within 600 bp upstream = 79 Fraction of orfs with sites within 600 bp upstream = 0.0126887 Motif number 8 TTCGCTTTCTTTCTAAAAAAACTGCCGG 1 6 1 TTTCTTCAAA 0.894339 -189 TCCTACGCGGTTTCTTTCATAAATCAATTCCAG 2 43 0 TTTCTTCAAA 0.893701 -43 TTTATACTCTTCCCTGTCAACAATCATTTA 5 8 0 TCCCTTCCAA 0.834757 -293 GCCAATGAAGATCCTTTCTGTAATGGCCTAAAG 5 42 0 ATCCTTCTAA 0.805152 -259 TCTATCTGATTTCCTCTACCCAATAAAAAAAGC 5 261 0 TTCCTTACAA 0.866597 -40 TCATTGATGGTTTCTTTCGGTAAGTCCCGTCTA 6 20 0 TTTCTTCTAA 0.941621 -157 TTATTAGAAATTTCTCTCTTTAAACGGTTCGGC 7 16 1 TTTCTTCTAA 0.941686 -285 TTTCAGCAGTTTTTTTTCGTTAAAAAACATGGA 13 33 1 TTTTTTCTAA 0.536757 -123 TATTTAATAATTCCTATAAGTATACTATGGATT 15 155 0 TTCCTTATAT 0.736842 -38 TGTCATTCCTTTCTGAATAAAACAAGTG 16 131 0 TTCCTTCAAT 0.869331 -18 AGTTTCTAAATTCCTATAATTAAAAACCCTTTT 18 15 1 TTCCTTATAA 0.887331 -137 AGCCCGCCAATTCCTTTCTTCATTGGATTCACC 19 99 0 TTCCTTCCAT 0.912757 -78 ***** ** *** Masking position 12 Map Score: 5.94396 Number of sites scoring better than the average of aligned sites = 394 Number in coding regions = 306 Number in noncoding regions = 88 Number of orfs with sites within 600 bp upstream = 105 Fraction of orfs with sites within 600 bp upstream = 0.0168648 Motif number 9 AGTTTTTTTAGAAAGAAAGCGAA 1 3 0 GAAAAAAGCG 0.964648 -192 GCTTTCTTTCTAAAAAAACTGCCGGCTGACG 1 14 1 TAAAAAACTG 0.920006 -181 ATCATTTACATAAAAAAACTGCCAGCGTCAG 1 39 0 TAAAAAACTG 0.920006 -156 GGCTCATTTGTAAACAAATCGATACCAGAAT 1 100 0 TAAAAAATCG 0.777562 -95 ATTGATTTATGAAAGAAACCGCGTAGGAAGT 2 48 1 GAAAAAACCG 0.984001 -38 CTCTACCCAATAAAAAAAGCGTCTCTGCATG 5 250 0 TAAAAAAGCG 0.932834 -51 GGGACTTACCGAAAGAAACCATCAATGATGG 6 25 1 GAAAAAACCA 0.904535 -152 TTATGAACAAAAAAGAAACCATCATTGATGG 6 43 0 AAAAAAACCA 0.721039 -134 AAAAAGTGTTGAAATAAACTGTGAATTGCGC 7 58 1 GAAAAAACTG 0.95762 -243 AATTAGTCTAGAAGCAAAGCGCTAATAAGCT 9 96 1 GAAGAAAGCG 0.837098 -43 TTTTTTAACGAAAAAAAACTGCTGAAATCAG 13 29 0 AAAAAAACTG 0.860415 -127 **** ****** Masking position 6 Map Score: 10.9614 Number of sites scoring better than the average of aligned sites = 730 Number in coding regions = 625 Number in noncoding regions = 105 Number of orfs with sites within 600 bp upstream = 106 Fraction of orfs with sites within 600 bp upstream = 0.0170254 Motif number 10 AAAAGTAAAGTAGAGAAACTATTCAAAAGT 1 164 1 TAGAGAAACT 0.936201 -31 TTTTATTGGGTAGAGGAAATCAGATAGAGA 5 266 1 TAGAGGAAAT 0.920753 -35 GGAAATCAGATAGAGAAACGGGGGGAAGCA 5 280 1 TAGAGAAACG 0.795815 -21 ACCGTTTAAAGAGAGAAATTTCTAATAATT 7 14 0 GAGAGAAATT 0.799114 -287 AGGTTGTTTTTAGAGAAAAACGGAGGAGAA 14 24 0 TAGAGAAAAA 0.610422 -41 TATGTGGTATTATAGGAACTGTTCCATCAT 15 124 1 TATAGGAACT 0.918497 -69 ATAGTATACTTATAGGAATTATTAAATATG 15 160 1 TATAGGAATT 0.876618 -33 GCTGTGCGGATAGAGGAACAGTGTATGAAA 16 59 1 TAGAGGAACA 0.915725 -90 GGTTTTTAATTATAGGAATTTAGAAACTTT 18 13 0 TATAGGAATT 0.876618 -139 ATCCAATGAAGAAAGGAATTGGCGGGCTGA 19 104 1 GAAAGGAATT 0.547321 -73 ********** Masking position 4 Map Score: 3.312 Number of sites scoring better than the average of aligned sites = 218 Number in coding regions = 170 Number in noncoding regions = 48 Number of orfs with sites within 600 bp upstream = 55 Fraction of orfs with sites within 600 bp upstream = 0.00883392 Motif number 11 CTTTCATAAATCAATTCCAGCCCTTTTAGG 2 33 0 TCAATTCCAG 0.929178 -53 ATATAATCTATCAATTTCAAAATTTTTTGT 4 14 0 TCAATTTCAA 0.953799 -62 TCTCGACACCTCAATTTCCGACTATTTGTA 4 56 0 TCAATTTCCG 0.966321 -20 ATAAGAAATATCGATTTCAATTTTCTGATT 7 100 0 TCGATTTCAA 0.883004 -201 TTAGTCATACTCCATTTCAGGACACGCCAT 12 93 0 TCCATTTCAG 0.939725 -50 GCTAGAATTGACAATTTCAGGGCATAATAC 17 39 0 ACAATTTCAG 0.898498 -109 CATTGACAGTTCAATTTCCACTGGATAAAA 18 98 1 TCAATTTCCA 0.932849 -54 ********** Masking position 4 Map Score: 3.9224 Number of sites scoring better than the average of aligned sites = 160 Number in coding regions = 149 Number in noncoding regions = 11 Number of orfs with sites within 600 bp upstream = 10 Fraction of orfs with sites within 600 bp upstream = 0.00160617 Motif number 12 GCCAGCGTCAGCCGGCAGTTTTTTTAGAAA 1 20 0 GCCGGCAGTT 0.98334 -175 GCCGGCTGACGCTGGCAGTTTTTTTATGTA 1 34 1 GCTGGCAGTT 0.91877 -161 GCTCTTTAGCGGGTTTTTAATTTGAGAA 3 9 1 GCGGGTTTTT 0.867321 -38 AGATCCATGAGCCGGGTTTTAGAAGTGCGC 5 81 1 GCCGGGTTTT 0.913135 -220 TGCAAAACAAGCCGGTTGCTGAGGTTTCTA 7 155 0 GCCGGTTGCT 0.943706 -146 AAAGGAATTGGCGGGCTGATTTTTTAAAGC 19 115 1 GCGGGCTGAT 0.945933 -62 TGTTTTTTTGGCCGGCTGTAATGTAAGCGC 19 143 0 GCCGGCTGTA 0.965716 -34 ********** Masking position 5 Map Score: 1.8566 Number of sites scoring better than the average of aligned sites = 445 Number in coding regions = 401 Number in noncoding regions = 44 Number of orfs with sites within 600 bp upstream = 40 Fraction of orfs with sites within 600 bp upstream = 0.00642467 Motif number 13 AAATGATTGTTGACAGGGAAGAGTATAAAGCTTT 5 12 1 TCAGGGAAAT 0.961935 -289 TCCACTCTGTTTGAAAAGCAGACTTCTGCTCTCC 5 184 0 TAAAAGCAAT 0.608382 -117 CACAAACTTTTGCAAGAGAAAAGTTTTGTCTGAT 6 74 0 TAAGAGAAAT 0.957001 -103 CAAAAAGACATCAAAGAGAAACATACCCTGCAAG 6 145 1 TAAGAGAACT 0.822742 -32 GCCGAACCGTTTAAAGAGAGAAATTTCTAATAAT 7 15 0 TAAGAGAGAT 0.822742 -286 GACATAAGAATAGAAGGGCAAATTGCCCTT 9 7 0 TAAGGGCAAT 0.961935 -132 GAATGCAACGGAAAACTGCTGATTTCA 13 4 1 TAACGGAAAT 0.837583 -152 ACATGCTCCCTTTCAGAGAATAGTATACACCTTC 13 100 0 TCAGAGAAAT 0.940641 -56 GAATTGACAATTTCAGGGCATAATACAACCATCA 17 31 0 TCAGGGCAAT 0.947348 -117 TTTTTTTGTTTGTATGGGAATAATTATCAATATT 18 55 1 TATGGGAAAT 0.833168 -97 * ******* * * Masking position 1 Map Score: 2.12645 Number of sites scoring better than the average of aligned sites = 172 Number in coding regions = 143 Number in noncoding regions = 29 Number of orfs with sites within 600 bp upstream = 34 Fraction of orfs with sites within 600 bp upstream = 0.00546097 Motif number 14 TGGATGATTGTAAAAGCCGCAGCTGAGCCAA 1 69 0 TAAAAGCCGA 0.771707 -126 GAAAAGGGGCTGAAAGCAGGT 3 36 1 TGAAAGCAGT 0.960947 -11 GAACGTTTTTTGAAATCAGTATTCAAAGGCG 5 127 1 TGAAATCAGA 0.939136 -174 GCTGAAGTTGGGAGAGCAGAAGTCTGCTTTT 5 174 1 GGAGAGCAGA 0.901175 -127 ATTGGGTAGAGGAAATCAGATAGAGAAACGG 5 270 1 GGAAATCAGT 0.941603 -31 TCACAGAGCGGGAAATCCGCTTTTAAATAAA 12 55 0 GGAAATCCGT 0.901289 -88 AAAAAACTGCTGAAATCAGCAGTTTTCCGTT 13 17 0 TGAAATCAGA 0.939136 -139 ATATGACTTGTGAAAGCTGGAGGGTCAAGAC 15 11 0 TGAAAGCTGA 0.862895 -182 CACATATTCTGAAAAGCAGGTACTAAAACAC 15 99 0 GAAAAGCAGT 0.861841 -94 ********* * Masking position 5 Map Score: 4.29122 Number of sites scoring better than the average of aligned sites = 598 Number in coding regions = 543 Number in noncoding regions = 55 Number of orfs with sites within 600 bp upstream = 58 Fraction of orfs with sites within 600 bp upstream = 0.00931577 Motif number 15 ********** No masking Map Score: -5.46875e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0