AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00460_bsub_reg_300.orf -o00460_bsub_300.ace -a/home/amcguire/alignace/lib/ORF_bsub.txt -z/skink1/amcguire/genomes/bsub.fna -g0.44 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.44 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 ybbD 27 alternate gene name: yzbA; similar to beta-hexosaminidase #2 ybbE 84 similar to beta-lactamase #3 ybbF 25 similar to sucrose phosphotransferase enzyme II #4 ybbI 170 similar to hypothetical proteins #5 ybbK 300 ybbK #6 yccC 216 similar to asparaginase #7 yckC 300 similar to hypothetical proteins from B. subtilis #8 yckD 81 yckD #9 yckE 153 similar to beta-glucosidase #10 ggt 184 gamma-glutamyltranspeptidase #11 ansA 181 L-asparaginase #12 ywpB 191 similar to hydroxymyristoyl-(acyl carrier protein) dehydratase #13 glyA 206 serine hydroxymethyltransferase #14 ywlF 156 alternate gene name: ipc-32d; similar to ribose 5-phosphate epimerase (pentose phosphate) #15 ywlE 75 alternate gene name: ipc-31d; similar to protein-tyrosine-phosphatase #16 ywlD 78 alternate gene name: ipc-30d; similar to hypothetical proteins #17 ywlC 156 alternate gene name: ipc-29d; similar to hypothetical proteins #18 ywlB 66 alternate gene name: ipc-28d #19 spoIIR 140 alternate gene name: ipc-27d, csfX #20 bglP 300 phosphotransferase system (PTS) beta-glucoside-specific enzyme IIABC component Motif number 1 AGGCTAGCCCCTTTCTGTGCTTCTATCCCGTTTA 2 61 0 CCTTTGTGTT 0.855929 -24 TTCAGTATATTCATTTCTGTTATGATATTTCAACTA 4 108 0 TCTTTGTTTT 0.949705 -63 CCAACTAAAGCCATTTATTTTATGATAGAGACAAGC 5 252 1 CCTTTTTTTT 0.977192 -49 GTCATATCCTTCTTTTTTTGTCTTTTCATACAATGA 6 95 0 TCTTTTGTTT 0.811746 -122 TTAAATGTTTCCATTTTCTTTCTCATCGAATATATC 7 257 0 CCTTTTTTTT 0.977192 -44 TGGTTCGCTCTTTTTATTTTTATGCATAAAAAAT 8 9 1 TCTTTTTTTG 0.965429 -73 TGTTTTGCTGCCTTGTATTTTTTATGCATAAAAATA 8 25 0 CCTGTTTTTG 0.897818 -57 GCATAGCCAGTCTTTTCTTTTATTTTAAGATAGTGA 13 18 1 TCTTTTTTTT 0.97143 -189 CCTATCCGTATCCTGTTCTTTGTTTTTACCATCACT 13 167 0 TCTGTTTTTT 0.894626 -40 AACGGCGACTTCGTTTCTTTTATTGGTATA 15 5 0 TCTTTTTTTG 0.965429 -71 AACGAAGTCGCCGTTTCTTTTTTCTTCATATATAAT 15 26 1 CCTTTTTTTT 0.977192 -50 CGTAAAACAATCGTTTTATTGTTGTGAATAAGGAGT 17 121 1 TCTTTTTGTG 0.874578 -36 GAGATGTCAACGCTTTCATTTTTGGTGTTGACTATC 20 41 0 CGTTTTTTTT 0.770452 -260 TCCTGACGGGTCGTTTTATTTGTTTGTAGGTATACT 20 93 0 TCTTTTTTTG 0.965429 -208 TGCACCTGCACCATTTAGGTTTTGCCTGCTTTCGCA 20 136 0 CCTTTGTTTC 0.817541 -165 GCAATCTGTGTCATTTAGGTTTTTTTATTCTCTTTT 20 185 1 TCTTTGTTTT 0.949705 -116 ** *** *** * * Masking position 6 Map Score: 16.6995 Number of sites scoring better than the average of aligned sites = 550 Number in coding regions = 429 Number in noncoding regions = 121 Number of orfs with sites within 600 bp upstream = 139 Fraction of orfs with sites within 600 bp upstream = 0.0223257 Motif number 2 CCCGATTCTTCGCCGTCCTTTA 4 2 0 CCCGTCCTTT 0.888328 -169 GGCGAAGAATCGGGCCGCTTGGAGAACAGTT 4 19 1 CGGCCGCTTG 0.738646 -152 GAGGATGCCCCCTGTTTTAAAATGATAT 4 153 0 CCCCTGTTTT 0.931085 -18 CCGACCCTCTGCTTGTAAGGCAGAT 5 5 1 CCTCTGCTTG 0.850728 -296 AACGGTTAAGCACCGCCCTTTCACGCGGTAA 5 93 0 CCCGCCCTTT 0.902103 -208 ATACAGGTCACCCCCTGTTTGTAAAGAGGAA 5 170 1 CCCCTGTTTG 0.890906 -131 GTCAAAAGATCAGTCAGCTTTTCTCTCAGTA 6 140 0 CGTCAGCTTT 0.68499 -77 GTTCTCCCTCCTATATGAAGCTGT 10 171 0 CCCCTCCTAT 0.735641 -14 GTGATGCGGCCCGCCCGCTTTATTGACCGCG 14 115 0 CGCCCGCTTT 0.979549 -42 CTGCTTTTCCTCCCAGCGTGTGTGATGCGG 14 137 0 CCCCAGCGTG 0.75022 -20 CCCTTGGACACGCCCCGCTTTTTTAGCCTAT 16 46 0 CCCCCGCTTT 0.989478 -33 CCGTTCACCCCGTTTTTGCGTTCTTT 18 51 0 CCCCCGTTTT 0.939942 -16 CACCGTTCCTCTCCGTGCTTTGTTTCTAGCC 19 113 0 CCCGTGCTTT 0.955045 -28 CATTTAGGTTTTGCCTGCTTTCGCAGTAACA 20 130 0 TGCCTGCTTT 0.700558 -171 TGGTGAAAGGCGGCCACCTTTCATCCAGCAG 20 254 1 CGCCACCTTT 0.875163 -47 * ********* Masking position 10 Map Score: 13.6214 Number of sites scoring better than the average of aligned sites = 1148 Number in coding regions = 985 Number in noncoding regions = 163 Number of orfs with sites within 600 bp upstream = 163 Fraction of orfs with sites within 600 bp upstream = 0.0261805 Motif number 3 TATTATATACAGGTCACCCCCTGTTTGTAAAG 5 164 1 AGGTCCCCCT 0.913043 -137 AACATTCCCACCTTACTGAATTGC 6 3 1 CATTCCACCT 0.955248 -214 ATAGCAGTCCCTTCTTAATCCGTATG 10 5 1 CAGTCCTTCT 0.933831 -180 ACCATGCACCTCTTCACTGTATCT 11 168 0 CATGCCCTCT 0.918846 -14 TCCGCTCTTTGATTCACACCATATGATGTGCT 14 76 0 GATTCCACCT 0.866694 -81 GTCAGTCACCCCTTATTTTTCTCT 15 62 0 CAGTCCCCCT 0.995448 -14 CCGTTCACCCCGTTTTTGCGTTC 18 54 0 CGTTCCCCCT 0.975685 -13 ACGTTTATCCCAGGCTCTCCTTGTCCATAATA 19 80 1 CAGGCCTCCT 0.955566 -61 CAGATTGCGAGAGTCTCCTCCTGCACCTGCAC 20 161 0 GAGTCCCTCT 0.949479 -140 TTTCATCCAGCAGTCCCCCCATAAAAAGGAGG 20 272 1 CAGTCCCCCT 0.995448 -29 ***** **** * Masking position 12 Map Score: 9.89427 Number of sites scoring better than the average of aligned sites = 119 Number in coding regions = 89 Number in noncoding regions = 30 Number of orfs with sites within 600 bp upstream = 31 Fraction of orfs with sites within 600 bp upstream = 0.00497912 Motif number 4 TATTATATACAGGTCACCCCCTGTTTGTAA 5 164 1 AGGTCACCCC 0.948874 -137 AACATTCCCACCTTACTGAATT 6 3 1 CATTCCCACC 0.835064 -214 GTGTGTGATGCGGCCCGCCCGCTTTATTGA 14 120 0 CGGCCCGCCC 0.945875 -37 GTCAGTCACCCCTTATTTTTCT 15 64 0 CAGTCACCCC 0.985771 -12 CCGTTCACCCCGTTTTTGCGT 18 56 0 CGTTCACCCC 0.975021 -11 CGGTCCCCACCGTTCCTCTC 19 131 0 CGGTCCCCAC 0.974575 -10 TTTCATCCAGCAGTCCCCCCATAAAAAGGA 20 272 1 CAGTCCCCCC 0.99306 -29 ********** Masking position 5 Map Score: 5.99332 Number of sites scoring better than the average of aligned sites = 68 Number in coding regions = 54 Number in noncoding regions = 14 Number of orfs with sites within 600 bp upstream = 16 Fraction of orfs with sites within 600 bp upstream = 0.00256987 Motif number 5 AAAAATTTAATTTTCCTCTTTACAAACAGGG 5 182 0 TTTTCTCTTT 0.920078 -119 TTTCAAACTTTTTAACTCTTTTTTAACTGAA 5 216 1 TTTACTCTTT 0.833558 -85 ATTGGTTTCTCCTCTCTTGCTTTGCTT 5 284 0 TTCTCTCTCT 0.792902 -17 CTATTTCTCTCCTTACATCCATAT 6 203 0 TTTCCTCCTT 0.937899 -14 TGGTTCGCTCTTTTTATTTTTAT 8 3 1 GTTCCTCTTT 0.864178 -79 GAACTTCCGCTCCTTTTTCACCTTG 11 5 1 TTCCCTCCTT 0.960135 -177 ATATTATGAATTAATCTCTTTTTCAACCGCG 12 97 0 TTAACTCTTT 0.685403 -95 TTTCACTATATTCTACTCCTTCACGCAGGAT 14 45 0 TTCTCTCCTT 0.937899 -112 CGCGCAGCCTGTCCGCTCTTTGATTCACACC 14 88 0 GTCCCTCTTT 0.910285 -69 TCACCCCTTATTTTTCTCTATTATATATGAA 15 50 0 TTTTCTCTAT 0.618301 -26 GTCCCCACCGTTCCTCTCCGTGCTTTGTTTC 19 118 0 TTCCCTCCGT 0.833964 -23 TTAGGTTTTTTTATTCTCTTTTAGGAGGTGA 20 199 1 TTATCTCTTT 0.833558 -102 **** ****** Masking position 7 Map Score: 6.69303 Number of sites scoring better than the average of aligned sites = 583 Number in coding regions = 411 Number in noncoding regions = 172 Number of orfs with sites within 600 bp upstream = 203 Fraction of orfs with sites within 600 bp upstream = 0.0326052 Motif number 6 CATATCAACTCGATGTTAGTCGCGGAACAGCTCAGCTA 9 69 0 CATTAGGAAC 0.71659 -85 TTTGATAAACCTATCATAGGCTATGAAACGCGTTTCAT 9 104 0 CATAAGGAAA 0.985016 -50 TGTATTGTTACAATCTTAGCGTAAAAAAATTACAGCGT 10 136 0 CATTAGAAAA 0.764782 -49 ACTTTTAATGCAATTATAGACACGGAAAATAAAATACG 11 94 0 CATAAGGAAA 0.985016 -88 TCTATAATTGCATTAAAAGTATGCGAAAAGCGAATACC 11 112 1 CTTAAGGAAA 0.883911 -70 AACCAACTGTCAATGAGAGCCGTCAAAAGTTATGATAT 12 50 0 CATAAGAAAA 0.935532 -142 TTATTTTTCTCTATTATATATGAAGAAAAAAGAAACGG 15 36 0 CATAATGAAA 0.825075 -40 GTGGACAACGCTAATAAAGAAGTGGATAAGTATGTGTA 17 21 0 CAAAAGGATA 0.854368 -136 CTATTATGGACAAGGAGAGCCTGGGATAAACGTGCAGG 19 75 0 CAGAAGGATA 0.774838 -66 CTCTCCTTGTCCATAATAGGGCTAGAAACAAAGCACGG 19 94 1 CATAAGGAAA 0.985016 -47 GCATCACCTCCTAAAAGAGAATAAAAAAACCTAAATGA 20 195 0 CAAAAGAAAA 0.852511 -106 GCATTTGATACAAAAAAAGCTGGTGAAAGGCGGCCACC 20 234 1 CAAAAGGAAA 0.963214 -67 * ** * ** **** Masking position 8 Map Score: 8.47436 Number of sites scoring better than the average of aligned sites = 230 Number in coding regions = 201 Number in noncoding regions = 29 Number of orfs with sites within 600 bp upstream = 32 Fraction of orfs with sites within 600 bp upstream = 0.00513974 Motif number 7 AAAATTTAATTTTCCTCTTTACAAACAGGGGGTGA 5 177 0 TTTCTTCAAA 0.765239 -124 GAAAATTAAATTTTTTATTTTCAAACTTTTTAACT 5 198 1 TTTTTTCAAA 0.956874 -103 TTTTTAACTCTTTTTTAACTGAAAAGCTCCAACTA 5 224 1 TTTTTTAAAA 0.84179 -77 CAGTCACTATATTTTTGATTGCAATTCAGTAAGGT 6 20 0 ATTTTTCAAT 0.687433 -197 GACTGGTCTATTATCTTGATTCAATCATCAATTGT 6 50 1 TTATTTCAAT 0.687453 -167 ATCCTTCTTTTTTTGTCTTTTCATACAATGAATTT 6 91 0 TTTTTTCATA 0.70398 -126 TCATTGTACATTTTATCTATTCAGTCAAAAGATCA 6 159 0 TTTTTTCAGT 0.778994 -58 CACCCATGCTTTTTGTATACACAATTCGAACTTTT 7 14 0 TTTTTCCAAT 0.765251 -287 GCCTTGTATTTTTTATGCATAAAAATAAAAAGAGC 8 17 0 TTTTTTAAAA 0.84179 -65 CCATTTTATTCCTCCAATCCTATTTTTC 8 64 0 TTTTTTCAAT 0.95714 -18 GATTTTAAGCATCCAATGGGAATTGGG 9 3 1 TTTTATCAAT 0.686558 -151 AAATCTAAATTTTTATTGGTAAAAACGAATATTAA 13 88 0 TTTTTTAAAA 0.84179 -119 ACAGGACATCTTTTATACTTTCAAAAGGATTACAC 17 85 1 TTTTTTCAAA 0.956874 -72 TTCACCAGCTTTTTTTGTATCAAATGCTGCATCAC 20 226 0 TTTTTTAAAT 0.851686 -75 **** * * **** Masking position 13 Map Score: 7.00302 Number of sites scoring better than the average of aligned sites = 258 Number in coding regions = 184 Number in noncoding regions = 74 Number of orfs with sites within 600 bp upstream = 79 Fraction of orfs with sites within 600 bp upstream = 0.0126887 Motif number 8 CTGCTTGTAAGGCAGATGCTCTCCCAGCTGAG 5 19 1 GCAGATGTCT 0.972341 -282 TCGTCGAGCTGACAAAAGTTATTATATACAGG 5 145 1 GCAAAAGTAT 0.954974 -156 TATCTATTCAGTCAAAAGATCAGTCAGCTTTT 6 149 0 GCAAAAGTCA 0.811484 -68 ATGCCCCTAAGGCATATGATATATTCGATGAG 7 240 1 GCATATGTAT 0.839551 -61 TTTCACAAGTGACAAATGGTATATTATATAGT 10 104 0 GCAAATGTAT 0.945101 -81 AAGATGGGTTGCGAGAAGGTATTCGCTTTTCG 11 135 0 GGAGAAGTAT 0.830166 -47 AATGAGAGCCGTCAAAAGTTATGATATGATAA 12 45 0 GCAAAAGTAT 0.954974 -147 GTTGTCAGAAAATCTGCAAACAGGT 14 4 1 GCAGAAATCT 0.80938 -153 AAGCAGTCAGATGTTCTAACCCTTTTT 16 6 1 GCAGATGTCT 0.972341 -73 * ****** *** Masking position 6 Map Score: 4.18195 Number of sites scoring better than the average of aligned sites = 133 Number in coding regions = 105 Number in noncoding regions = 28 Number of orfs with sites within 600 bp upstream = 25 Fraction of orfs with sites within 600 bp upstream = 0.00401542 Motif number 9 GGGAAGAGGTGATGAAAAAAGGAATTGTCC 7 71 1 GATGAAAAAA 0.927171 -230 TGATATATTCGATGAGAAAGAAAATGGAAA 7 256 1 GATGAGAAAG 0.896379 -45 ATCAGCTCAAGGTGAAAAAGGAGCGGAAGT 11 13 0 GGTGAAAAAG 0.975205 -169 TTTTAGCGCGGTTGAAAAAGAGATTAATTC 12 91 1 GTTGAAAAAG 0.90825 -101 TTTTAAGGCCGATGTAAAAGATTATTTTTA 13 125 0 GATGTAAAAG 0.87116 -82 ACACACGCTGGGAGGAAAAGCAG 14 144 1 GGAGGAAAAG 0.815849 -13 TATTATATATGAAGAAAAAAGAAACGGCGA 15 33 0 GAAGAAAAAA 0.82334 -43 AAACGTGCAGGGTGAAAAAAATCTAGCAAG 19 56 0 GGTGAAAAAA 0.938926 -85 ********** Masking position 7 Map Score: 3.16554 Number of sites scoring better than the average of aligned sites = 730 Number in coding regions = 654 Number in noncoding regions = 76 Number of orfs with sites within 600 bp upstream = 91 Fraction of orfs with sites within 600 bp upstream = 0.0146161 Motif number 10 AACAGAAATGAATATACTGAATATTGAGAT 4 123 1 AATATACTGA 0.860456 -48 TGCAATCAAAAATATAGTGACTGGTCTATT 6 32 1 AATATAGTGA 0.945737 -185 ATGACAACAAAAAATACTGAGAGAAAAGCT 6 126 1 AAAATACTGA 0.811436 -91 CTTTTATTTTAAGATAGTGAAATAAATTCC 13 34 1 AAGATAGTGA 0.964795 -173 AAAACCATGTACAATAGTGATGGTAAAAAC 13 152 1 ACAATAGTGA 0.922529 -55 GAAGGAGTAGAATATAGTGAAAAGCACATC 14 54 1 AATATAGTGA 0.945737 -103 TATTTATGGTACGATAGTGTTTTAGGAGGT 19 16 0 ACGATAGTGT 0.827922 -125 TGTTCTAGAAACGATAGTCAACACCAAAAA 20 29 1 ACGATAGTCA 0.816375 -272 ********** Masking position 6 Map Score: 3.31514 Number of sites scoring better than the average of aligned sites = 69 Number in coding regions = 51 Number in noncoding regions = 18 Number of orfs with sites within 600 bp upstream = 24 Fraction of orfs with sites within 600 bp upstream = 0.0038548 Motif number 11 TGCTCTCCCAGCTGAGCTAATCCTCCAAATGGT 5 35 1 GCTGCAATCC 0.953972 -266 GCGTGAAAGGGCGGTGCTTAACCGTTTACCAAC 5 98 1 GCGGCTAACC 0.883886 -203 CTCCTCTCTTGCTTTGCTTGTCTCTATCATAAA 5 270 0 GCTGCTGTCT 0.971906 -31 GGCAATATTAGCTGAGCTGTTCCGCGACTAACA 9 61 1 GCTGCGTTCC 0.873329 -93 AAGGACTGCATAGCCAGTCTTTTCTTTTAT 13 8 1 GCAGCAGTCT 0.69415 -199 GAGATCCTCTCCTATCCGTATCCTGTTCTTTGT 13 180 0 CCTCCTATCC 0.824243 -27 TTTATTGACCGCGCAGCCTGTCCGCTCTTTGAT 14 95 0 GCGGCTGTCC 0.993969 -62 GCTTTTTTAGCCTATGCGTGTCCAAAAAGGGTT 16 28 0 CCTGCTGTCC 0.981655 -51 GGCTAAAAAAGCGGGGCGTGTCCAAGGGGGTTA 16 49 1 GCGGCTGTCC 0.993978 -30 TTTATCCCAGGCTCTCCTTGTCCATAATAGGGC 19 83 1 GCTCCTGTCC 0.981655 -58 *** ** ***** Masking position 7 Map Score: 6.93952 Number of sites scoring better than the average of aligned sites = 225 Number in coding regions = 197 Number in noncoding regions = 28 Number of orfs with sites within 600 bp upstream = 16 Fraction of orfs with sites within 600 bp upstream = 0.00256987 Motif number 12 GTTCGAATCCCGTACGGGTCACCATTTGGA 5 58 0 CGTACGGGTC 0.887867 -243 CAAAAATATAGTGACTGGTCTATTATCTTG 6 38 1 GTGACTGGTC 0.970124 -179 GAGAGAAAAGCTGACTGATCTTTTGACTGA 6 144 1 CTGACTGATC 0.900632 -73 GCATAGATGAGTGACGGGTCTGCTGCATCC 7 146 0 GTGACGGGTC 0.989697 -155 ATCATAACTTTTGACGGCTCTCATTGACAG 12 52 1 TTGACGGCTC 0.909138 -140 AGTAACAATCCTGACGGGTCGTTTTATTTG 20 107 0 CTGACGGGTC 0.992907 -194 ********** Masking position 4 Map Score: 2.6906 Number of sites scoring better than the average of aligned sites = 86 Number in coding regions = 77 Number in noncoding regions = 9 Number of orfs with sites within 600 bp upstream = 11 Fraction of orfs with sites within 600 bp upstream = 0.00176678 Motif number 13 AAAAACATAGTTGAAATATCATAACAGAAA 4 101 1 TTGAAATATC 0.713646 -70 ATAATAACTTTTGTCAGCTCGACGAGAACA 5 140 0 TTGTCAGCTC 0.953504 -161 GTATTTTTTGTTGTCATATCCTTCTTTTTT 6 113 0 TTGTCATATC 0.936531 -104 AAATCTATAATTATCATATCATAACTTTTG 12 35 1 TTATCATATC 0.656823 -157 ATCATAACTTTTGACGGCTCTCATTGACAG 12 52 1 TTGACGGCTC 0.891497 -140 TGTCTTGACATCTCCTTCATCTGC 12 178 0 TTGACATCTC 0.975419 -14 AATGAAAGCGTTGACATCTCACGAATCTAG 20 57 1 TTGACATCTC 0.975419 -244 ********** Masking position 2 Map Score: 2.28628 Number of sites scoring better than the average of aligned sites = 129 Number in coding regions = 106 Number in noncoding regions = 23 Number of orfs with sites within 600 bp upstream = 31 Fraction of orfs with sites within 600 bp upstream = 0.00497912 Motif number 14 CTAAAACAGAAACAATTTAATCGAACTGAG 2 25 0 AACAATTTAA 0.767501 -60 ATAAAATTTCAAAAATTTAAAAACATAGTT 4 83 1 AAAAATTTAA 0.932838 -88 TTTGAAAATAAAAAATTTAATTTTCCTCTT 5 193 0 AAAAATTTAA 0.932838 -108 AATTGCAATCAAAAATATAGTGACTGGTCT 6 29 1 AAAAATATAG 0.676244 -188 GATCTTCAGAATAAATTTAAGTCTTGCTGA 7 211 1 ATAAATTTAA 0.790796 -90 AAGAAAATGGAAACATTTAAACCATAATGG 7 273 1 AAACATTTAA 0.767493 -28 GAACTTTAAATTAAATTTAAGTTATTAATA 13 64 1 TTAAATTTAA 0.32779 -143 TTTTACCAATAAAAATTTAGATTTTTTAAA 13 99 1 AAAAATTTAG 0.920734 -108 GCAGGGTGAAAAAAATCTAGCAAGCTGTTA 19 50 0 AAAAATCTAG 0.755844 -91 ********** Masking position 5 Map Score: 0.811378 Number of sites scoring better than the average of aligned sites = 55 Number in coding regions = 34 Number in noncoding regions = 21 Number of orfs with sites within 600 bp upstream = 23 Fraction of orfs with sites within 600 bp upstream = 0.00369419 Motif number 15 CCAGCTGAGCTAATCCTCCAAATGGTGACCCG 5 42 1 TATCTCCAAA 0.890972 -259 CCATTTTATTCCTCCAATCCTATTTTTC 8 64 0 TATCTCCAAT 0.787248 -18 GATTTTAAGCATCCAATGGGAATTGGG 9 6 1 TAGCTCCAAT 0.756699 -148 TCAATTCGCGTACACTTCCTAATACCTATATG 11 48 0 TAACTCCTAA 0.96277 -134 TGATGATTGCTATACATACTAATGCAGATGAA 12 155 1 TAACTACTAA 0.894463 -37 GTGCAGTTTATACACATACTTATCCACTTCTT 17 11 1 TAACTACTTA 0.702024 -146 GGACATCTTTTATACTTTCAAAAGGATTACAC 17 88 1 TAACTTCAAA 0.770343 -69 CTTAAACCTCCTAAAACACTATCG 19 3 1 TAACTCCTAA 0.96277 -138 AGTGCTAAAGTATACCTACAAACAAATAAAAC 20 85 1 TAACTACAAA 0.894464 -216 GTGTATACCTCCTTTTTATGGGGGG 20 286 0 TAACTCCTTT 0.764983 -15 ** ** ****** Masking position 7 Map Score: 2.64531 Number of sites scoring better than the average of aligned sites = 86 Number in coding regions = 59 Number in noncoding regions = 27 Number of orfs with sites within 600 bp upstream = 36 Fraction of orfs with sites within 600 bp upstream = 0.0057822