AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00520_bsub_reg_100.orf -o00520_bsub_100.ace -a/home/amcguire/alignace/lib/ORF_bsub.txt -z/skink1/amcguire/genomes/bsub.fna -g0.44 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.44 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 yfnH 235 similar to glucose-1-phosphate cytidylyltransferase #2 yjbJ 203 similar to lytic transglycosylase #3 yjmC 104 similar to malate dehydrogenase #4 yngA 300 yngA #5 xsa 216 beta-xylosidase #6 araP 35 integral membrane protein #7 araN 30 sugar-binding protein #8 araA 207 L-arabinose isomerase #9 ytdA_ytcA 171 ytdA: alternate gene name: yzwA; similar to UTP-glucose-1-phosphate uridylyltransferase, ytcA: similar to NDP-sugar dehydrogenase #10 yugK 103 similar to NADH-dependent butanol dehydrogenase #11 yugJ 229 similar to NADH-dependent butanol dehydrogenase #12 gtaB 245 UTP-glucose-1-phosphate uridylyltransferase #13 lytD 128 N-acetylglucosaminidase (major autolysin) (CWBP90) #14 galK 80 galactokinase #15 ywcC 300 alternate gene name: ipa-33d #16 galE 114 UDP-glucose 4-epimerase Motif number 1 GATGAAAAAGAGCCTTGAGCGG 1 3 1 TGAAAAAGAG 0.759799 -233 TTGTATAACCAAAAAAAGAGCCTTGAGCGA 1 44 0 AAAAAAAGAG 0.748924 -192 ATGATATGAGAGAAAGCCAGCCTTGGTGAC 1 101 0 AGAAAGCCAG 0.932261 -135 AACTGAAACTTGAAAGCGGGCTTTCCGTAT 2 110 0 TGAAAGCGGG 0.962116 -94 TATACTCTTGAAAAAAACAGCCGCATTGAA 4 184 0 AAAAAAACAG 0.705658 -117 ACAAAACATGAAAAAGCGGGTATACCGCTC 4 222 0 AAAAAGCGGG 0.959917 -79 TATAAATATGAAAAAACCCGGACTTTTAAA 5 25 0 AAAAAACCCG 0.634035 -192 ATTCAAAAAGTGAAAGCGGGGAGGTTCTC 6 17 1 TGAAAGCGGG 0.962116 -19 CCTATTGAATAAAAAGCCGGGCTCTGCCCC 8 32 1 AAAAAGCCGG 0.950613 -176 TTTCTTTTAAAAAAAGCCGGGGGCAGAGCC 8 51 0 AAAAAGCCGG 0.950613 -157 AATATCCTATTAAAAAAGGGCTGGTTCGTG 9 48 1 TAAAAAAGGG 0.815633 -124 GCAACTGGGCAGAAAGCGGAATCACGAACC 9 70 0 AGAAAGCGGA 0.789028 -102 TTGACAAAAAAGAAAAAGGGAAGCAGCCAA 10 30 0 AGAAAAAGGG 0.93009 -74 ATGATGCTGGTAAAAAACAGATTTTCCATT 10 70 0 TAAAAAACAG 0.587398 -34 TTACTATAGCAGAAAACCAGGTGACAAAT 12 10 0 AGAAAACCAG 0.920939 -236 TCATAGAATAAGAAAGAGGAGAAGGA 13 113 1 AGAAAGAGGA 0.578874 -16 ATTTCTTCATAGAAAACGGCAGATCATATG 14 22 0 AGAAAACGGC 0.726821 -59 GAATAAAAAATAAAAACCAGAAAGGTGATT 14 57 1 TAAAAACCAG 0.794806 -24 CACTATATAATGAAAACAGGTCATTTTTTA 16 81 1 TGAAAACAGG 0.628759 -34 ********** Masking position 5 Map Score: 20.0794 Number of sites scoring better than the average of aligned sites = 2191 Number in coding regions = 1851 Number in noncoding regions = 340 Number of orfs with sites within 600 bp upstream = 318 Fraction of orfs with sites within 600 bp upstream = 0.0510761 Motif number 2 GATTGTGAAGATGTACCAGGTTTCGAACTCA 1 190 1 ATGACCAGGT 0.873435 -46 GGGCTTGGCGATGAAGAAGGTGCTGATTGCT 2 176 0 ATGAGAAGGT 0.974081 -28 AAAACTGAAAAGGAAGGAGGCACTTGC 3 88 1 AGGAGGAGGC 0.971838 -17 TTTTTTAATGATGTAGGATGTTAGATAAAGG 4 24 0 ATGAGGATGT 0.972469 -277 AAACCTCCAAATGATGCTGGTAAAAAACAGA 10 79 0 ATGTGCTGGT 0.784392 -25 TTAATAATTCATGGAGGAGGTTGCAAAAC 11 9 0 ATGAGGAGGT 0.989706 -221 CTTCCCTCATATGGAGAATGCATGTATAGAT 11 69 0 ATGAGAATGC 0.928123 -161 ATTTTTTATTATGCAGAATGTCCTCACCACA 11 193 0 ATGAGAATGT 0.932466 -37 TCACCTATAAATGAAGCATGCGCGTGCCGAT 13 61 1 ATGAGCATGC 0.953061 -68 AGCCAGCGCGATGATGGAGGCGAGTACAACA 15 11 1 ATGTGGAGGC 0.957099 -290 TTTAGGGAATAGGTAGGTGGTTTTTCCTTCA 15 75 0 AGGAGGTGGT 0.901532 -226 *** ******* Masking position 1 Map Score: 10.2334 Number of sites scoring better than the average of aligned sites = 354 Number in coding regions = 293 Number in noncoding regions = 61 Number of orfs with sites within 600 bp upstream = 70 Fraction of orfs with sites within 600 bp upstream = 0.0112432 Motif number 3 AATTATTTTAAATATTCTTTATATTATATTG 3 3 0 AAATTATTAT 0.873344 -102 GAATATTTAAAATAATTTGTAAATAAAATGTGTTTGTAG 3 25 1 AAATTAAAAT 0.656465 -80 TAACTCCTCCAAAAGTTTCTATACACAATTTTTTTAATG 4 45 0 AAATTATAAT 0.856159 -256 ATTCTACATGAAAATGCATCATTTTAAATCATTTCATTC 12 57 1 AAAGAATAAT 0.724598 -189 ACCATTTTTAAACAAGCTTTATCCTTAATATTAAAACTT 12 117 0 AAAGTATAAT 0.95391 -129 AGCTTGTTTAAAAATGGTTTATCCGATATCATAAAAATG 12 138 1 AAAGTATTAT 0.95997 -108 CGATATCATAAAAATGTGTAAAAACATATTGAAAAGGGT 12 161 1 AAAGGAATAT 0.727453 -85 AAACATATTGAAAAGGGTAAATAGAGAATAGTTTAACCA 12 182 1 AAAGTATAAT 0.953932 -64 TCTATGAAGAAATAAGGGGAATAAAAAATAAAAACCAGA 14 39 1 AAAGGATAAT 0.877698 -42 TATTATTATAAATAAGGTCCATTGGTTATATTAGTCATT 15 108 0 AAAGTATTAT 0.959982 -193 GGTCATTTTTAATAGGCTAAATGATTTATTTTCATTTAC 15 174 0 AAAGTATTAT 0.959979 -127 GCTAAAAAATATGAAAAAACTATTAATAAACGA 16 5 1 AAATTAATAT 0.688837 -110 ATCCATTTTTAAGAAGTTTAATCGTTTATTAATAGTTTT 16 26 0 AAAGTATTAT 0.959981 -89 ** * * * ** *** Masking position 11 Map Score: 11.0078 Number of sites scoring better than the average of aligned sites = 188 Number in coding regions = 151 Number in noncoding regions = 37 Number of orfs with sites within 600 bp upstream = 40 Fraction of orfs with sites within 600 bp upstream = 0.00642467 Motif number 4 GGAATCTATTTTTTCAAGTTGGTTGTATAACCAA 1 62 0 TTTTAATGTT 0.868623 -174 TACAGTAGATTTTGAAACCGGATTGAAATCGGAC 1 131 1 TTTGAAGGTT 0.896944 -105 TTACAAATTATTTTAAATATTCTTTATATTATAT 3 13 0 TTTTAATTTT 0.725819 -92 ATACACAATTTTTTTAATGATGTAGGATGTTAGA 4 30 0 TTTTAAATTA 0.575722 -271 GCGGCTGTTTTTTTCAAGAGTATAAGACTATTGA 4 190 1 TTTTAAGTTA 0.890753 -111 TGTTCATATTTTATTAATTGTTTATTCAACACTG 4 249 1 TTATAAGTTA 0.638046 -52 GTCAACGACATTTTCTATTGTTTTTATATTTGTA 5 65 0 TTTTTAGTTT 0.692578 -152 CGCTTTCACTTTTTGAATGGGATT 6 1 0 TTTTAAGGTT 0.975447 -35 TACAAAATATTTATTTATAGGTTTATTTTCCTAT 8 124 1 TTATTAGGTT 0.548835 -84 ATCTTTTGTATTTGAAAGCGTTTTATTTTATGAG 8 169 1 TTTGAAGTTT 0.777023 -39 AACCAGCCCTTTTTTAATAGGATATTGATATATG 9 40 0 TTTTAAGGTA 0.953193 -132 GATAAACCATTTTTAAACAAGCTTTATCCTTAAT 12 127 0 TTTTAAAGTT 0.868623 -119 CTATTTACCCTTTTCAATATGTTTTTACACATTT 12 172 0 TTTTAATGTT 0.868623 -74 CCAGGGGTCATTTTTAATAGGCTAAATGATTTAT 15 184 0 TTTTAAGGTA 0.953193 -117 GGTATTTATTTCTTTAAACGGTTATGCTATTCGG 15 222 0 TCTTAAGGTA 0.695508 -79 GTTTAATCGTTTATTAATAGTTTTTTCATATTTT 16 16 0 TTATAAGTTT 0.774722 -99 TCCACATCCATTTTTAAGAAGTTTAATCGTTTAT 16 36 0 TTTTAAAGTT 0.868623 -79 AACAGGTCATTTTTTAGGAGGGTTTACATC 16 95 1 TTTTAGGGTT 0.816719 -20 **** ** ** ** Masking position 13 Map Score: 13.9732 Number of sites scoring better than the average of aligned sites = 1319 Number in coding regions = 1087 Number in noncoding regions = 232 Number of orfs with sites within 600 bp upstream = 231 Fraction of orfs with sites within 600 bp upstream = 0.0371025 Motif number 5 CCTACAAACACATTTTATTTACAAATTATT 3 35 0 CATTTTATTT 0.682053 -70 CCTTCCTTTTCAGTTTTTTGGGCACTCTCC 3 75 0 CAGTTTTTTG 0.471146 -30 TTTCTATACACAATTTTTTTAATGATGTAG 4 39 0 CAATTTTTTT 0.542747 -262 GGTATACCCGCTTTTTCATGTTTTGTTCAT 4 226 1 CTTTTTCATG 0.4041 -75 ATGTTTTGTTCATATTTTATTAATTGTTTA 4 243 1 CATATTTTAT 0.600365 -58 CGGGTTTTTTCATATTTATAAATACATACG 5 35 1 CATATTTATA 0.457151 -182 ATGTCAACGACATTTTCTATTGTTTTTATA 5 71 0 CATTTTCTAT 0.787718 -146 CTGCCCCCGGCTTTTTTTAAAAGAAAAGAT 8 55 1 CTTTTTTTAA 0.400763 -153 TTTGTACGAACAATTTTATTATAGTAATTG 8 100 0 CAATTTTATT 0.542746 -108 CGAACCAGCCCTTTTTTAATAGGATATTGA 9 46 0 CTTTTTTAAT 0.587541 -126 CCCCTCAGCTCATGTTTATTACATGATATT 9 144 0 CATGTTTATT 0.512705 -28 TAAAATGATGCATTTTCATGTAGAATATGT 12 53 0 CATTTTCATG 0.798207 -193 GAAAATGCATCATTTTAAATCATTTCATTC 12 66 1 CATTTTAAAT 0.642429 -180 AAACTTATATCATTTTATTTGAATCAAGAA 12 93 0 CATTTTATTT 0.682053 -153 TCGGATAAACCATTTTTAAACAAGCTTTAT 12 134 0 CATTTTTAAA 0.795985 -112 TGTTTTTACACATTTTTATGATATCGGATA 12 157 0 CATTTTTATG 0.898523 -89 GAATCACTTCCATTTTCTAATAAAAAAACT 13 33 0 CATTTTCTAA 0.635325 -96 TTATATTAGTCATTTTTTTAGGGAATAGGT 15 92 0 CATTTTTTTA 0.823274 -209 TCCCAGGGGTCATTTTTAATAGGCTAAATG 15 190 0 CATTTTTAAT 0.892591 -111 ATAGTTTTTTCATATTTTTTAGC 16 4 0 CATATTTTTT 0.642052 -111 GGTCCACATCCATTTTTAAGAAGTTTAATC 16 42 0 CATTTTTAAG 0.881236 -73 GAAAACAGGTCATTTTTTAGGAGGGTTTAC 16 92 1 CATTTTTTAG 0.881244 -23 ********** Masking position 5 Map Score: 9.62237 Number of sites scoring better than the average of aligned sites = 1858 Number in coding regions = 1473 Number in noncoding regions = 385 Number of orfs with sites within 600 bp upstream = 394 Fraction of orfs with sites within 600 bp upstream = 0.063283 Motif number 6 CTTGAGCGAAGGCAATGCGCCCGCTCAAGGC 1 22 0 GGCATGCGCC 0.606743 -214 AATCTATCAAGGCATTTCCCCGATAATTTGT 1 163 0 GGCATTCCCC 0.972887 -73 GCAAGTGCCTCCTTCCTTTTCAGTTTT 3 88 0 GCCTCTTCCT 0.878327 -17 TAAAAAGCCGGGCTCTGCCCCCGGCTTTTTT 8 41 1 GGCTTGCCCC 0.942433 -167 TCGTGATTCCGCTTTCTGCCCAGTTGCTTCC 9 73 1 GCTTCTGCCC 0.755071 -99 GGTATTTTCCCCTCAGCTCAT 9 161 0 GGTATTTCCC 0.925835 -11 GCAGCCAAACGGCTATTTCCCCTTTTT 10 7 0 GGCTTTTCCC 0.983304 -97 ATAGCCGTTTGGCTGCTTCCCTTTTTCTTTT 10 22 1 GGCTCTTCCC 0.987707 -82 GCGAGGGCAGGCCAGCTTCCCTCATATGGAG 11 84 0 GCCACTTCCC 0.975263 -146 GCTTATATCAGCTTCTTTCCCAGCACCTTGC 11 113 1 GCTTTTTCCC 0.896362 -117 TTAAAAGGCACCTTCCTTATGATCGAA 12 229 0 GGCACTTCCT 0.912427 -17 **** ****** Masking position 10 Map Score: 9.83969 Number of sites scoring better than the average of aligned sites = 429 Number in coding regions = 375 Number in noncoding regions = 54 Number of orfs with sites within 600 bp upstream = 36 Fraction of orfs with sites within 600 bp upstream = 0.0057822 Motif number 7 CTCAGAATACGGAAAGCCCGCTTTCAAGTT 2 104 1 GGAAAGCCCG 0.991387 -100 CTTCTTCATCGCCAAGCCCGCTCAGC 2 188 1 GCCAAGCCCG 0.992017 -16 AGGAAATCCCGGACTTTAAAA 5 2 1 GGAAATCCCG 0.974924 -215 TCAATAGGACGGCCAGCCCGAGCTCCAAT 8 10 0 GGCCAGCCCG 0.9926 -198 AAAGCCGGGGGCAGAGCCCGGCTTTTTATT 8 39 0 GCAGAGCCCG 0.985406 -169 TATTCCAAGAGCGCATCCCGATGTTTGTAC 9 118 0 GCGCATCCCG 0.960973 -54 ********** Masking position 5 Map Score: 6.45036 Number of sites scoring better than the average of aligned sites = 143 Number in coding regions = 130 Number in noncoding regions = 13 Number of orfs with sites within 600 bp upstream = 11 Fraction of orfs with sites within 600 bp upstream = 0.00176678 Motif number 8 ACTGGATACATTTATTCATTGATAAGATGGG 4 104 1 TTTATTATTG 0.942085 -197 TTGTTCATATTTTATTAATTGTTTATTCAAC 4 248 1 TTTATTATTG 0.942085 -53 GTACAAAATATTTATTTATAGGTTTATTTTC 8 123 1 TTTATTATAG 0.973953 -85 GAACCAGCCCTTTTTTAATAGGATATTGATA 9 44 0 TTTTTTATAG 0.885881 -128 ACGCGCATGCTTCATTTATAGGTGAATCACT 13 55 0 TTCATTATAG 0.908521 -74 ATAAAACTAGTTTATTTATCGGCACGCGCAT 13 78 0 TTTATTATCG 0.931844 -51 ATTCCCCTTATTTCTTCATAGAAAACGGCAG 14 30 0 TTTCTTATAG 0.920035 -51 AGTTTAATCGTTTATTAATAGTTTTTTCATA 16 20 0 TTTATTATAG 0.973953 -95 ****** **** Masking position 8 Map Score: 7.25122 Number of sites scoring better than the average of aligned sites = 76 Number in coding regions = 56 Number in noncoding regions = 20 Number of orfs with sites within 600 bp upstream = 19 Fraction of orfs with sites within 600 bp upstream = 0.00305172 Motif number 9 CATATCTAATGCACGCAGCAGCTCGGACAC 2 75 1 GCACGCAGCA 0.88591 -129 TGACATCTCAGCAATCAGCACCTTCTTCAT 2 167 1 GCAATCAGCA 0.940864 -37 AGTTTTTTGGGCACTCTCCAAGCGAAACCC 3 64 0 GCACTCTCCA 0.973647 -41 GTTTTGCAACCTCCTCCATGAATTA 11 6 1 GCAACCTCCT 0.929195 -224 ATCTATACATGCATTCTCCATATGAGGGAA 11 69 1 GCATTCTCCA 0.925839 -161 TTCTTTCCCAGCACCTTGCAAAATAAAACC 11 125 1 GCACCTTGCA 0.840463 -105 CACATGTAAAGCAATCAGCTCTCACCGATC 11 167 0 GCAATCAGCT 0.915734 -63 TGTGGTGAGGACATTCTGCATAATAAAAAA 11 193 1 ACATTCTGCA 0.521692 -37 TTAAAAGGCACCTTCCTTATGATCGAA 12 229 0 GCACCTTCCT 0.782532 -17 GTGCAATCACCTTTCTGGTTTT 14 69 0 GCAATCACCT 0.915734 -12 ********** Masking position 3 Map Score: 4.01946 Number of sites scoring better than the average of aligned sites = 621 Number in coding regions = 550 Number in noncoding regions = 71 Number of orfs with sites within 600 bp upstream = 63 Fraction of orfs with sites within 600 bp upstream = 0.0101189 Motif number 10 GGCAATGCGCCCGCTCAAGGCTCTTTTTCA 1 13 0 CCGCTCAAGG 0.989397 -223 CGCATTGCCTTCGCTCAAGGCTCTTTTTTT 1 34 1 TCGCTCAAGG 0.935328 -202 CAAAAAACAGCCGTTCAATGCGGCTGTTTT 4 171 1 CCGTTCAATG 0.919311 -130 AGCGGGTATACCGCTCAATAGTCTTATACT 4 208 0 CCGCTCAATA 0.974239 -93 CATGCGCGTGCCGATAAATAAACTAGTTTT 13 77 1 CCGATAAATA 0.710037 -52 GAAATAAATACCGCTAAAGATTGATCCGGT 15 244 1 CCGCTAAAGA 0.952527 -57 ********** Masking position 5 Map Score: 2.153 Number of sites scoring better than the average of aligned sites = 169 Number in coding regions = 152 Number in noncoding regions = 17 Number of orfs with sites within 600 bp upstream = 10 Fraction of orfs with sites within 600 bp upstream = 0.00160617 Motif number 11 TAGATTTTGAAACCGGATTGAAATCGGACAAATTATCG 1 136 1 ACGATGAACA 0.817922 -100 GTGGAATGACATCGTGAATGTAACGAATTGGGCAGCAT 2 12 1 ACGATGAAGT 0.989424 -192 CGTGCATTAGATATGGACTGTAATGCCTGAAGCTGAAG 2 52 0 AAGATGAAGT 0.979431 -152 CTGAGGAGTCAGCATGAATGTAAGCGCTTTTAAAGTAA 5 122 0 ACGATGAACT 0.966097 -95 CCCGCACCTCGAATGGAAGGGGTAACGCAG 7 6 1 ACGATGAAGT 0.989424 -25 CCTCATATGGAGAATGCATGTATAGATTCTCCAATATG 11 58 0 AAGCTGATGT 0.778553 -172 TTTTATTTGAATCAAGAATGAAATGATTTAAAATGATG 12 73 0 ACGATGAAGT 0.989424 -173 AAATGTGTAAAAACATATTGAAAAGGGTAAATAGAGAA 12 172 1 AATATGAAGT 0.82357 -74 AAACAATTAAATACTGACTGGATAGTATGTAAATGAAA 15 146 1 AAGATGATGT 0.937685 -155 * * ** ** ** * * Masking position 9 Map Score: 4.71984 Number of sites scoring better than the average of aligned sites = 80 Number in coding regions = 67 Number in noncoding regions = 13 Number of orfs with sites within 600 bp upstream = 14 Fraction of orfs with sites within 600 bp upstream = 0.00224863 Motif number 12 TTTTTCAAGTTGGTTGTATAACCAAAAAAA 1 57 0 TGGTTGTATA 0.766086 -179 GATGTCAGACCGTTTGTATATTGGCTGAGC 2 144 0 CGTTTGTATA 0.766033 -60 AAATAAAATGTGTTTGTAGGGGTTTCGCTT 3 45 1 TGTTTGTAGG 0.871499 -60 ACTCCGTTTATATTTGTATGTTTTCAGACA 4 141 1 TATTTGTATG 0.694815 -160 ATTGTTTTTATATTTGTACGTATGTATTTA 5 53 0 TATTTGTACG 0.853436 -164 ATATTATATATGTTCGTACATGTCAACGAC 5 90 0 TGTTCGTACA 0.928351 -127 ATAATAAAATTGTTCGTACAAAATATTTAT 8 108 1 TGTTCGTACA 0.928351 -100 CGCATCCCGATGTTTGTACATCTGAAATTA 9 107 0 TGTTTGTACA 0.972433 -65 CTTTTCAATATGTTTTTACACATTTTTATG 12 167 0 TGTTTTTACA 0.778515 -79 ********** Masking position 4 Map Score: 2.53859 Number of sites scoring better than the average of aligned sites = 218 Number in coding regions = 163 Number in noncoding regions = 55 Number of orfs with sites within 600 bp upstream = 55 Fraction of orfs with sites within 600 bp upstream = 0.00883392 Motif number 13 TTCTGAGTGTCCGAGCTGCTGCGTGCATTA 2 81 0 CCGAGCTGCT 0.990268 -123 GACGGCCAGCCCGAGCTCCAAT 8 3 0 CCGAGCTCCA 0.977902 -205 CACCTGAGCTCCTTTACAAGATT 9 4 1 CTGAGCTCCT 0.929812 -168 CCGCTTTCTGCCCAGTTGCTTCCGCCTAAT 9 81 1 CCCAGTTGCT 0.848488 -91 CAGCTTCTTTCCCAGCACCTTGCAAAATAA 11 121 1 CCCAGCACCT 0.970718 -109 TCAGCTCTCACCGATCAGCATACCAGATGG 11 153 0 CCGATCAGCA 0.815973 -77 TTTGTGAACACCGAGCAACTATGTGTGAAA 15 44 0 CCGAGCAACT 0.951871 -257 ********** Masking position 4 Map Score: 3.42537 Number of sites scoring better than the average of aligned sites = 311 Number in coding regions = 293 Number in noncoding regions = 18 Number of orfs with sites within 600 bp upstream = 16 Fraction of orfs with sites within 600 bp upstream = 0.00256987 Motif number 14 TCAATCCGGTTTCAAAATCTACTGTAATGA 1 127 0 TTCAAAATCT 0.92958 -109 CTGGTACATCTTCACAATCTATCAAGGCAT 1 179 0 TTCACAATCT 0.964619 -57 ATTCGTTACATTCACGATGTCATTCCACC 2 10 0 TTCACGATGT 0.883582 -194 AATCCCATTCAAAAAGTGAAAGCGGGG 6 8 1 TTCAAAAAGT 0.813852 -28 TCTCCAATATGTCACAATCTATAACTGTTT 11 39 0 GTCACAATCT 0.893493 -191 ATTTACCCTTTTCAATATGTTTTTACACAT 12 174 0 TTCAATATGT 0.712595 -72 TTGCTCGGTGTTCACAAACTGAAGGAAAAA 15 56 1 TTCACAAACT 0.922243 -245 ********** Masking position 4 Map Score: 0.665223 Number of sites scoring better than the average of aligned sites = 134 Number in coding regions = 109 Number in noncoding regions = 25 Number of orfs with sites within 600 bp upstream = 32 Fraction of orfs with sites within 600 bp upstream = 0.00513974 Motif number 15 ********** No masking Map Score: -1.43997e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0