AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00630_bsub_reg_300.orf -o00630_bsub_300.ace -a/home/amcguire/genomes/ORF_bsub.txt -z/home/amcguire/genomes/bsub.fna -g0.44 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.44 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: yvoD 23 yvoD Input sequences: #1 citA 108 citrate synthase I #2 yjlC 300 yjlC #3 yjlD 39 similar to NADH dehydrogenase #4 yjmA 197 similar to glucuronate isomerase #5 yjmB 67 similar to Na+:galactoside symporter #6 yjmC 104 similar to malate dehydrogenase #7 ykrV 94 similar to aspartate aminotransferase #8 ykrW 196 similar to ribulose-bisphosphate carboxylase #9 ykrB 300 similar to formylmethionine deformylase #10 yloB 115 similar to calcium-transporting ATPase #11 yloC 82 similar to hypothetical proteins #12 yloD 233 similar to guanylate kinase #13 yloI 80 similar to pantothenate metabolism flavoprotein #14 def 26 polypeptide deformylase #15 citB 227 aconitate hydratase #16 kdgK 37 2-keto-3-deoxygluconate kinase #17 kdgR 221 transcriptional regulator (LacI family) #18 mmgD 33 citrate synthase III #19 mmgC 27 acyl-CoA dehydrogenase #20 mmgB 149 3-hydroxybutyryl-CoA dehydrogenase #21 mmgA 137 acetyl-CoA acetyltransferase #22 yqiK 78 similar to glycerophosphodiester phosphodiesterase #23 yqiH 300 alternate gene name: yzpA; similar to lipoprotein #24 yqhZ 263 similar to transcription termination #25 accB 155 acetyl-CoA carboxylase subunit (biotin carboxyl carrier subunit) #26 spoIIIAC 22 spoIIIAC #27 spoIIIAA 75 spoIIIAA #28 yqhV 144 alternate gene name: yqgE #29 efp 24 elongation factor P #30 yqhS 86 similar to 3-dehydroquinate dehydratase #31 yqhR 226 yqhR #32 citH 43 malate dehydrogenase #33 citC 163 isocitrate dehydrogenase #34 citZ 300 citrate synthase II #35 yvoB 181 similar to hypothetical proteins Motif number 1 TATTCCCCCTATCCTTTTCTGTTATTATAGTAA 1 83 0 ACCTTTTGTT 0.800064 -26 CTGGGTAGTAAACATTTATTTTTGTAAATGATT 2 168 1 ACATTTTTTT 0.962157 -133 TGACAGCGTTAACATTTCATTTTCAAAAAAGAG 4 86 1 ACATTTTTTT 0.962125 -112 TGTTAACGTTAACATTTTGATTTGTTTTTATTT 4 145 0 ACATTTATTT 0.589106 -53 CATATTACATAACCTCCTCTTTTAATTACGCCA 9 13 0 ACCTCCTTTT 0.829904 -288 TTACTTATGTATGATTTTGTTTTAATATGAAAT 15 136 1 AGATTTTTTT 0.754388 -92 ATCCTCAACCTCCGTTTTTGCGTTTTTTG 18 15 0 ACCTCCTTTT 0.829903 -19 TGTTTGACGCAGCCTTCTTTTTTCATTCATTCA 21 37 1 ACCTTCTTTT 0.932347 -101 ATACGACCCGATCATTTCCTGTTGTTAGAAAGA 23 172 0 ACATTTTGTT 0.803377 -129 GGGGAGGGCGGCCCTTTGGTTTTTTTACACGTT 24 31 1 GCCTTTTTTT 0.859202 -233 AAGAGATCATAACATATTTTTTTCGTATCCGCA 24 195 0 ACATATTTTT 0.633789 -69 TCCTATGTATGAAATTTCTTTTTTTATAGGTTA 25 123 0 GAATTTTTTT 0.475029 -33 ATTTGGGAACAGACTTCTTTTTTCCTTT 28 6 0 AACTTCTTTT 0.66682 -139 GTATAAAAGAAAGATTCTGTTTTTGGGCACAAA 28 53 0 AGATTCTTTT 0.628827 -92 GCACTCTCCCAACCTCCCATTTTTTTATATGAT 28 121 0 ACCTCCTTTT 0.829902 -24 AGGATTGCTAACCATTTCCTTTCACTCTATTGT 31 34 1 ACATTTTTTC 0.679994 -193 CTTTTTTATTGACATTTCATTTTTTGGGCACAC 31 188 1 GCATTTTTTT 0.861693 -39 GTTAGGAAAAATCATTTTATTTTCTATATAAGA 33 92 1 ACATTTTTTT 0.962272 -72 ATATTTAGAAAACATTTTATTTTTCTTATATAG 33 115 0 ACATTTTTTT 0.961625 -49 ATGTTTACCTATAATTTTTTTTTTCCATTCTGT 34 49 0 AAATTTTTTT 0.787453 -252 TGGAACTAAAACCCTTTGCTTTTGAAAGAACAT 34 152 0 ACCTTTTTTT 0.961517 -149 GTAAAATGTAAGCATTTTCTTTTTGGGGGAGAG 34 192 1 ACATTTTTTT 0.96228 -109 ATATAACATCTCCTTTTCAATAAATTT 34 284 0 ACATCTTTTT 0.900315 -17 CTTGCTCACAATACTTTCATTTTATCACTTTCG 35 127 0 AACTTTTTTT 0.783944 -55 * ***** **** Masking position 5 Map Score: 25.7411 Number of sites scoring better than the average of aligned sites = 647 Number in coding regions = 508 Number in noncoding regions = 139 Number of orfs with sites within 600 bp upstream = 164 Fraction of orfs with sites within 600 bp upstream = 0.0263412 Motif number 2 TTCTATTCTCCCTCTGATTAATATTTT 1 5 1 ATTCTCCTCA 0.804609 -104 CGTATATCCTCCGTCCTTTATATCAATT 3 22 0 ATCCTCCTCT 0.856915 -18 GCAAGTGCCTCCTTCCTTTTCAGTTTTT 6 87 0 TGCCTCCTCT 0.643072 -18 TAACTGCAGCAGCCTCCGCCGTAACCATATCCA 9 48 0 AGCCTCCCCA 0.982784 -253 GGTTAGCAACAGCCTCCACCTAAATAAGCAGCT 9 171 0 AGCCTCCCCA 0.982784 -130 GTCAGCCCGGAGTCTGCGCCAATCAAACGGATG 12 153 1 AGTCTGCCCT 0.946194 -81 TGAATTCTCCCCCTCTGCACTTTACA 13 65 0 ATTCTCCCCT 0.840464 -16 TCTCCAAAATCCCCCTTCAGATCAGATCATT 15 207 0 ATCCCCCTCA 0.767603 -21 TGTTTGAGCAATTCCGCTCCCCATCTGACCTGC 20 65 0 ATTCCGCCCA 0.721399 -85 TGCGTCAAACAGCCTCCTTCTAACAACTATTCA 21 15 0 AGCCTCCTCA 0.96936 -123 TGAAAAAAGAAGGCTGCGTCAAACAGCCTCCTT 21 29 0 AGGCTGCTCA 0.784989 -109 TGAATTCACAAGTCCGCTCCTGTAAGATGAACA 25 71 1 AGTCCGCCCT 0.87304 -85 CTTGTCATAAAGTCTGCCTCACATCATACATTT 27 18 1 AGTCTGCTCA 0.932183 -58 CAGAGCCTCCTCCTTTCTACCGATTG 27 60 0 AGCCTCCCCT 0.975889 -16 GGAAAAAAGAAGTCTGTTCCCAAATGGGAGCAG 28 14 1 AGTCTGTCCA 0.551569 -131 GCACAAAAAAAGCCTGCTCCCATTTGGGAACAG 28 27 0 AGCCTGCCCT 0.973024 -118 CATTGACGCAAGCCAGCCTCCAATGGTTCT 33 8 0 AGCCAGCTCA 0.7351 -156 ******* ** * Masking position 4 Map Score: 19.1166 Number of sites scoring better than the average of aligned sites = 506 Number in coding regions = 426 Number in noncoding regions = 80 Number of orfs with sites within 600 bp upstream = 55 Fraction of orfs with sites within 600 bp upstream = 0.00883392 Motif number 3 TAAACATTTATTTTTGTAAATGATTGTGCATG 2 176 1 TTTTTGAAAG 0.887031 -125 TTTGCTGATTTTTTTGGAAAGGGTAGTGCCTC 2 253 0 TTTTTGAAAG 0.887021 -48 CAATGCCAGATTCATTAAAAGGA 4 2 0 TTCATTAAAG 0.744158 -196 ATCAATCTCTTTTTTGAAAATGAAATGTTAAC 4 93 0 TTTTTGAAAG 0.88695 -105 ATTTCAAGATTTTTTTAGAAGGTGAGAATAG 7 74 1 TTTTTTGAAG 0.719877 -21 TGTATGATTTTGTTTTAATATGAAATTGTGAG 15 143 1 TGTTTTATAG 0.653656 -85 TATGAATGTATGCTTTGAAACGGGCATGAATG 21 64 0 TGCTTTAAAG 0.827991 -74 AATATCCTTTAAAAGGTTACGCTTGG 23 5 1 TCCTTTAAAG 0.723416 -296 TATTCTCAAATTTTTTAAAATGAATAAAAAGT 23 68 1 TTTTTTAAAG 0.955642 -233 GGCCCTTTGGTTTTTTTACACGTTACCCTTTA 24 40 1 TTTTTTACAG 0.772987 -224 ATGAAATTTCTTTTTTTATAGGTTACTACTAA 25 116 0 TTTTTTATAG 0.883158 -40 ACCGATTGGCTTCTTTAAAATGTATGATGTGA 27 36 0 TTCTTTAAAG 0.950684 -40 AACAGAATCTTTCTTTTATACGGAAATGACAA 28 65 1 TTCTTTATAG 0.870962 -80 CAACCTCCCATTTTTTTATATGATATGCTCTA 28 113 0 TTTTTTATAG 0.883159 -32 ATTTGTTATGTTCTTTCAAAAGCAAAGGGTTT 34 145 1 TTCTTTAAAG 0.950659 -156 AAAGGGGAAATTTATTGAAAAGGAGATGTTAT 34 277 1 TTTATTAAAG 0.765087 -24 CTAAAACAGATTTTATAAAAGGGGGGAAAACA 35 86 0 TTTTATAAAG 0.634226 -96 ****** *** * Masking position 10 Map Score: 13.9607 Number of sites scoring better than the average of aligned sites = 406 Number in coding regions = 312 Number in noncoding regions = 94 Number of orfs with sites within 600 bp upstream = 102 Fraction of orfs with sites within 600 bp upstream = 0.0163829 Motif number 4 CTACCCAGTTTTTCATCTTGCCATATTCAG 2 146 0 TTTCATCTTG 0.642683 -155 ATCCAATTCTCCTTTACTATAAGCA 2 286 0 ATTCTCCTTT 0.717074 -15 TTTGTTTTTATTTTACCTTTATATTCCTTT 4 128 0 TTTTACCTTT 0.731487 -70 AACACCCCAAATTTTTCTTTACTTTTTTCA 7 17 1 ATTTTTCTTT 0.548366 -78 TTTTCTTTACTTTTTTCATTTAACCATATA 7 29 1 TTTTTTCATT 0.848852 -66 GGTTGTTATTTTTTTCCGTGCGGTTTTGTA 13 39 1 TTTTTCCGTG 0.761381 -42 CAATTCATTATTTTTTCGTTGACTCTTTTC 17 98 0 TTTTTTCGTT 0.707157 -124 AAATCCCCTTTTTCATCATGTT 20 3 0 TTTCATCATG 0.642683 -147 CGCAGCCTTCTTTTTTCATTCATTCATGCC 21 44 1 TTTTTTCATT 0.848852 -94 ACCCTAAAGTTTTCTCCATTATACTTATTT 22 46 0 TTTCTCCATT 0.921402 -33 GTCTTTACAAATTCTCCATTCTGGTCAAAG 23 249 1 ATTCTCCATT 0.717074 -52 GATGTTTGGCTTTTATCTTTGACCAGAATG 23 265 0 TTTTATCTTT 0.628458 -36 GTAAGCCGGCTTTCTTCATGCTTTGAAATA 24 70 0 TTTCTTCATG 0.856565 -194 CATAGCCGAGTTTCTTCATGAACGTGAAAT 24 99 1 TTTCTTCATG 0.856565 -165 TTTCTTTCTCCTTTGATCCTCTTT 24 250 0 TTTCTCCTTT 0.921402 -14 ACAGACTTCTTTTTTCCTTT 28 1 0 TTTTTCCTTT 0.900447 -144 AGTTTTAGGCTTTTTCCTTGC 32 2 0 TTTTTCCTTG 0.881245 -42 TATAATTTTTTTTTTCCATTCTGTGATTTC 34 43 0 TTTTTCCATT 0.900447 -258 ********** Masking position 3 Map Score: 12.9326 Number of sites scoring better than the average of aligned sites = 1520 Number in coding regions = 1234 Number in noncoding regions = 286 Number of orfs with sites within 600 bp upstream = 308 Fraction of orfs with sites within 600 bp upstream = 0.04947 Motif number 5 TTTTGTTCAAAAAGTGTTATCATATAGAAGG 2 24 1 AAAGTGTATC 0.810008 -277 TTTTGAAAATGAAATGTTAACGCTGTCATAA 4 83 0 GAAATGTAAC 0.669276 -115 AAAACAAATCAAAATGTTAACGTTAACATTT 4 150 1 AAAATGTAAC 0.927696 -48 ATTCTATTTCAAAATGTTAACGTTAACATTT 4 161 0 AAAATGTAAC 0.927696 -37 CAAAGTGTCCGCTCAGTATCGC 5 2 1 AAAGTGTCGC 0.942321 -66 TAAATAGTGAAAAGAGTCAACGAAAAAATAA 17 90 1 AAAGAGTAAC 0.686065 -132 AGACAACTAGAAATTGTAAGCGCTGTCTATC 21 98 1 AAATTGTAGC 0.742658 -40 CCAGTATGATAAAATGTTCACGAGAAGTGAA 30 25 1 AAAATGTCAC 0.904044 -62 TCTCATGTAAAAAATGTTCACTTCTCGTGAA 30 41 0 AAAATGTCAC 0.904044 -46 CAGCTGCCAAAAAGTGTGAGCTTTTTTATTG 31 168 1 AAAGTGTAGC 0.956987 -59 ACCTCCAGTTAAAGTGTGCCCAAAAAATGAA 31 203 0 AAAGTGTCCC 0.895167 -24 CATTCAATTTAAAGTGTAACCCAATTTTGAT 33 62 0 AAAGTGTACC 0.920816 -102 AGCAGCCAGTAAAATGTAAGCATTTTCTTTT 34 184 1 AAAATGTAGC 0.932889 -117 ******* *** Masking position 3 Map Score: 12.9701 Number of sites scoring better than the average of aligned sites = 102 Number in coding regions = 70 Number in noncoding regions = 32 Number of orfs with sites within 600 bp upstream = 32 Fraction of orfs with sites within 600 bp upstream = 0.00513974 Motif number 6 TGTATTCCCCCTATCCTTTTCTGTTATTATAGTAAATA 1 80 0 CTTCTTTATT 0.721159 -29 CGTATATCCTCCGTCCTTTATATCAATTTGAATCTGAG 3 12 0 CCTCTTTATT 0.921357 -28 GCAAGTGCCTCCTTCCTTTTCAGTTTTTTGGGCACTCT 6 77 0 CCTCTTTTTT 0.953577 -28 TGATGATGGACTATCATTTCAAGATTTTTTTAGAAGGT 7 59 1 CTTATTTTTT 0.872426 -36 AAAAATGTACCGGTAATTTTTACTGTTTACGCTCTCTC 15 56 0 CGTATTTTTT 0.8807 -172 CAAAAGAATACCATAATTTTAAAATTTGGGAAGAGTTT 17 142 0 CCTATTTTTG 0.934452 -80 GCGCCAGCTACCATGATTTGTTTGATTTCCATTCAAAT 20 29 0 CCTATTTTTT 0.968729 -121 TGCTTCTTTCCGCTAATTTTTTCTAATTGGCGCCTCAA 23 100 1 CGTATTTATT 0.80808 -201 TACACGTTACCCTTTATTTCAAAGCATGAAGAAAGCCG 24 56 1 CCTATTTATG 0.890482 -208 ATTGCCATAGCCTTGCTTTTCCTACATGCATTATACCC 31 109 1 CCTCTTTATG 0.843541 -118 TGCATTATACCCGTTATTTTCAAATTTTACTCGCAGCT 31 135 1 CCTATTTTTT 0.968729 -92 CGAAAAAACGCCTTTATTTGCGGGTTTTTG 34 3 0 CCTATTTTTT 0.968729 -298 AATTTGAATACCTTTATTTTACTCTTTTTCAGACTAGT 35 30 1 CCTATTTTTT 0.968729 -152 GCTCACAATACTTTCATTTTATCACTTTCGGGCTTGAA 35 119 0 CTTATTTTTT 0.872426 -63 ** * **** *** Masking position 9 Map Score: 13.1735 Number of sites scoring better than the average of aligned sites = 192 Number in coding regions = 154 Number in noncoding regions = 38 Number of orfs with sites within 600 bp upstream = 44 Fraction of orfs with sites within 600 bp upstream = 0.00706714 Motif number 7 CTATAATAACAGAAAAGGATAGGGGGAATACAA 1 86 1 AGAGAGGGAA 0.872305 -23 ATGCCTTAAAAGCGTGAGACAGGGAGAGGCACTACCCT 2 228 1 AGCGAGGGAG 0.994061 -73 ATTTTGAAATAGAATGAAAGACGGTGAGGAC 4 177 1 AGAAACGGAG 0.806044 -21 TCTTATCAAGAGCAGGCAGAGGGACGAGCCCGATGAAG 8 50 1 AGCAGGGGAG 0.958012 -147 AGCGGCTGAGAGATAAGATTCGGACGAGAAACGAAACC 8 131 1 AGAATGGGAG 0.897496 -66 CGATAATTATAGCATGAAATGGGACGAGTCAGAATAAG 10 36 1 AGCAAGGGAG 0.991814 -80 TCTATAAGAGAGCAGGGGAGTGGACGAGCGGA 10 94 1 AGCGAGGGAG 0.994061 -22 GACAATCGAAATCATCCGATTGGCGGAGATGATATTGC 12 118 0 ATCGAGGGAG 0.961782 -116 CCCTCAACTAAGAGGAGGTTGGGAAGAG 16 20 1 AGAGTGGGAG 0.923646 -18 ATTTTAAAAAATTTGAGAATAGGGTGAGCAAATCGTTT 23 51 0 ATTAAGGGAG 0.702797 -250 AAAGAAGCCAATCGGTAGAAAGGAGGAGGCTCTG 27 52 1 ATCGAGGGAG 0.970867 -24 GCCTAAAACTAGCCATAAAGGAGAAGAGAGAC 32 22 1 AGCAAAGGAG 0.896836 -22 AGCTCGGGGCAGCCCGGAACAGGAGGAACATATC 35 158 1 AGCAAGGGAA 0.938761 -24 *** ** ** *** Masking position 17 Map Score: 13.5899 Number of sites scoring better than the average of aligned sites = 149 Number in coding regions = 125 Number in noncoding regions = 24 Number of orfs with sites within 600 bp upstream = 26 Fraction of orfs with sites within 600 bp upstream = 0.00417604 Motif number 8 TTTATATTCCTTTGGGATCAATCTCTTTTT 4 111 0 TTTGGGATCA 0.913704 -87 TTTTCAGTTTTTTGGGCACTCTCCAAGCGA 6 69 0 TTTGGGCACT 0.912111 -36 TCGTTGCACCTTTGTGAAGAAATCCGATAT 9 248 1 TTTGTGAAGA 0.802186 -53 CTAAGAGGAGGTTGGGAAGAG 16 27 1 GTTGGGAAGA 0.906063 -11 AATTTTAAAATTTGGGAAGAGTTTTTTTAA 17 136 0 TTTGGGAAGA 0.9732 -86 CCTGCTCCCATTTGGGAACAGACTTCTTTT 28 18 0 TTTGGGAACA 0.983355 -127 AGATTCTGTTTTTGGGCACAAAAAAAGCCT 28 45 0 TTTGGGCACA 0.982978 -100 CATTTCATTTTTTGGGCACACTTTAACTGG 31 200 1 TTTGGGCACA 0.982978 -27 ********** Masking position 3 Map Score: 7.20394 Number of sites scoring better than the average of aligned sites = 56 Number in coding regions = 45 Number in noncoding regions = 11 Number of orfs with sites within 600 bp upstream = 16 Fraction of orfs with sites within 600 bp upstream = 0.00256987 Motif number 9 CATTATCACCTCAATCATAATATGGC 15 6 1 TCACCTCAAC 0.973594 -222 CCCCTTCAGATCAGATCATTCTCAGATGAAC 15 196 0 TCAGATCATC 0.909349 -32 GCCTCTGGATTCACATCATACATCCGCACAT 20 116 0 TCACATCATC 0.977654 -34 GGTTTCACCTCATTCAGAAGATAGA 21 123 0 TCACCTCATC 0.985672 -15 CGTTTCACCTCAAACCCTAAAGTTT 22 64 0 TCACCTCAAC 0.973594 -15 AAAGTCTGCCTCACATCATACATTTTAAAGA 27 26 1 TCACATCATC 0.977654 -50 ********* * Masking position 6 Map Score: 5.25753 Number of sites scoring better than the average of aligned sites = 37 Number in coding regions = 28 Number in noncoding regions = 9 Number of orfs with sites within 600 bp upstream = 12 Fraction of orfs with sites within 600 bp upstream = 0.0019274 Motif number 10 AATAGCAAACACAAAAAACTCCAATTCGATT 2 56 0 AAAAAAACTC 0.467071 -245 AGACATTGCCAGAAAGCACTCGGAAAGGAAT 4 42 0 AAAAGCACTC 0.507399 -156 ATCAAAAAACCTCTTCAAACTGC 8 184 0 CAAAAACCTC 0.871573 -13 ATTCAGGATGCAAGAGACCGCGGAATGCTAA 12 186 1 CAGAGACCGC 0.860882 -48 TAGACAAAAAACGCAAAAACGGAG 18 4 1 AAAAAAACGC 0.732914 -30 CGGAATTGCTCAAACAGCCGCCGACGCGGCT 20 82 1 CAACAGCCGC 0.892207 -68 ACATCCGCACATAAAAGCCGCGTCGGCGGCT 20 97 0 AAAAAGCCGC 0.939757 -53 TGATGTGAATCCAGAGGCCGCGGAGGCAGGA 20 129 1 CAGAGGCCGC 0.892523 -21 AAGGCTGCGTCAAACAGCCTCCTTCTAACAA 21 22 0 CAACAGCCTC 0.725543 -116 GTAAAAAAACCAAAGGGCCGCCCTCCCCTTG 24 28 0 CAAGGGCCGC 0.829902 -236 GAATGAGGGAAAAAAGCCCGCTAAACAAGCG 25 11 1 AAAAGCCCGC 0.931795 -145 ACAGCAACGCAAAAAGCCCGCTTGTTTAGCG 25 29 0 AAAAGCCCGC 0.931795 -127 AATAAAAACCTCCCAGTATGTA 33 152 0 AAAAAACCTC 0.787801 -12 CAAAAACCCGCAAATAAAGGC 34 1 1 CAAAACCCGC 0.95837 -300 GTGATTTCCCCGAAAAAACGCCTTTATTTGC 34 20 0 CAAAAAACGC 0.833782 -281 * ********* Masking position 3 Map Score: 9.2632 Number of sites scoring better than the average of aligned sites = 864 Number in coding regions = 723 Number in noncoding regions = 141 Number of orfs with sites within 600 bp upstream = 115 Fraction of orfs with sites within 600 bp upstream = 0.0184709 Motif number 11 GCAGCCTCCGCCGTAACCATATCCATACATAT 9 41 0 CCGTAACCAT 0.908235 -260 GCCACCATATCCGTAACCACCATAACTGCAGC 9 71 0 CCGTAACCAA 0.96906 -230 GTAGCCATATCCGCAGCCACCATATCCGTAAC 9 86 0 CCGCAGCCAA 0.981101 -215 AAAGGTGCGGCCGTAGCCATATCCGCAGCCAC 9 98 0 CCGTAGCCAT 0.927232 -203 TTCTTTGAAACCGTTACCAAAATATTTTCATT 17 48 0 CCGTTACCAA 0.962153 -174 GATTTCAAAACCGTTACAACAAAAGAATACCA 17 167 0 CCGTTACAAA 0.713649 -55 TGACCTGCGCCAGCTACCATGATTTGTTTGAT 20 41 0 CAGCTACCAA 0.914724 -109 ATTTTACTCGCAGCTGCCAAAAAGTGTGAGCT 31 158 1 CAGCTGCCAA 0.932478 -69 GTTTTAGTTCCAGCAGCCAGTAAAATGTAAGC 34 173 1 CAGCAGCCAA 0.944488 -128 ********* * Masking position 9 Map Score: 4.73025 Number of sites scoring better than the average of aligned sites = 206 Number in coding regions = 183 Number in noncoding regions = 23 Number of orfs with sites within 600 bp upstream = 21 Fraction of orfs with sites within 600 bp upstream = 0.00337295 Motif number 12 ATTCGATTACCTTCTATATGATAACACTTTTTGA 2 30 0 CTTCTTTGTA 0.822945 -271 ACACAAAAAACTCCAATTCGATTACCTTCTATAT 2 45 0 CTCCATCGTA 0.931352 -256 ATCCAATTCTCCTTTACTATAAGCAGTTTGCT 2 279 0 CTCCTTCTTA 0.88906 -22 GCTACGGCCGCACCTTTGCGCTAATCGTTGTTTT 9 113 1 CACCTTCGTA 0.820229 -188 TCTTCCCAACCTCCTCTTAGTTGAGGGCACCTAG 16 13 0 CTCCTTAGTA 0.926719 -25 CTAAAGTTTTCTCCATTATACTTATTTTGTCGGC 22 39 0 CTCCATTATA 0.790689 -40 TAAAAAGTTGCTTCTTTCCGCTAATTTTTTCTAA 23 92 1 CTTCTTCGTA 0.843363 -209 TTTACAAATTCTCCATTCTGGTCAAAGATAAAAG 23 252 1 CTCCATTGTA 0.921334 -49 CACAAGTCCGCTCCTGTAAGATGAACATAGTATG 25 77 1 CTCCTTAGTA 0.926719 -79 ACAATCGCACTCCTATGTATGAAATTTCTTTTT 25 133 0 CTCCTTTAGA 0.70852 -23 CAGAGCCTCCTCCTTTCTACCGATTGGCTTCTT 27 53 0 CTCCTTTACA 0.866952 -23 GTTTAATGTCCTCCTATATTCCAA 29 1 0 CTCCTTTTCA 0.777401 -24 GTCTCTCTTCTCCTTTATGGCTAGTTTTAGGCT 32 21 0 CTCCTTTGCA 0.952836 -23 ATATAACATCTCCTTTTCAATAAATTTCCCCTT 34 278 0 CTCCTTCATA 0.937313 -23 ***** * ** * * Masking position 14 Map Score: 8.59613 Number of sites scoring better than the average of aligned sites = 242 Number in coding regions = 157 Number in noncoding regions = 85 Number of orfs with sites within 600 bp upstream = 110 Fraction of orfs with sites within 600 bp upstream = 0.0176678 Motif number 13 CTCACCGTCTTTCATTCTATTTCAAAATGT 4 175 0 TTCATTCTAT 0.918303 -23 CGTTGTTTTATTCATTCTGTTAATCATTGT 9 138 1 TTCATTCTGT 0.94689 -163 GCTGGTCAATTTCATGCTGTGTGGTTAGCA 9 196 0 TTCATGCTGT 0.93633 -105 CTCGTCCCATTTCATGCTATAATTATCGAA 10 34 0 TTCATGCTAT 0.902643 -82 TTTTGTCGGCTCCACTCTAGGATTAAGGCT 22 19 0 TCCACTCTAG 0.688981 -60 TTACAAATTCTCCATTCTGGTCAAAGATAA 23 253 1 TCCATTCTGG 0.877875 -48 GCCGGCTTTCTTCATGCTTTGAAATAAAGG 24 66 0 TTCATGCTTT 0.738084 -198 ACCATTTCCTTTCACTCTATTGTACAGGAA 31 44 1 TTCACTCTAT 0.84602 -183 ATTTTTTTTTTCCATTCTGTGATTTCCCCG 34 39 0 TCCATTCTGT 0.93633 -262 ********** Masking position 4 Map Score: 3.17418 Number of sites scoring better than the average of aligned sites = 150 Number in coding regions = 121 Number in noncoding regions = 29 Number of orfs with sites within 600 bp upstream = 34 Fraction of orfs with sites within 600 bp upstream = 0.00546097 Motif number 14 CTTTATAAGTCGGTTGCCGGGCTTCATCGG 8 79 0 CGGTTGCCGG 0.971743 -118 TCTTTAGACGCGATTGCAGTTTGAAGAGGT 8 169 1 CGATTGCAGT 0.907845 -28 CTATAATTATCGAATGCAGGAAGAATGAGA 10 18 0 CGAATGCAGG 0.983144 -98 CGAAATCATCCGATTGGCGGAGATGATATT 12 120 0 CGATTGGCGG 0.955684 -114 CCAGAGGCCGCGGAGGCAGGA 20 139 1 CGGAGGCAGG 0.923529 -11 AAAGACAACGCGAATGCAGGCGAGCAAGTT 23 225 0 CGAATGCAGG 0.983144 -76 AGAACCATTGGAGGCTGGCTTGCG 33 5 1 CCATTGGAGG 0.860355 -159 ********** Masking position 6 Map Score: 2.01881 Number of sites scoring better than the average of aligned sites = 177 Number in coding regions = 166 Number in noncoding regions = 11 Number of orfs with sites within 600 bp upstream = 13 Fraction of orfs with sites within 600 bp upstream = 0.00208802 Motif number 15 AAATATTGATTATTTTTTAAATATTATATTT 1 54 1 TATTTTTAAA 0.673836 -55 AAAAATTTGGGGTGTTAAAAAG 7 2 0 GGTGTTAAAA 0.686325 -93 AGAAAATATAGATTTTATAAATTATTTTGAA 8 22 0 GATTTTTAAA 0.91298 -175 GGAAGAATTGGGTGTTTTAAA 11 72 1 GGTGTTTAAA 0.89815 -11 TTTTCCGTGCGGTTTTGTAAAGTGCAGAGGG 13 50 1 GGTTTTTAAA 0.933685 -31 CCTATTCTCAAATTTTTTAAAATGAATAAAA 23 66 1 AATTTTTAAA 0.673836 -235 CAAGTTCCATGATTTTCAAAAGGGCTATACG 23 200 0 GATTTTAAAA 0.722468 -101 CCAGAATGGAGAATTTGTAAAGACAACGCGA 23 242 0 GAATTTTAAA 0.571382 -59 AAAAATAAAATGTTTTCTAAATATGAATTAC 33 124 1 TGTTTTTAAA 0.734921 -40 CCCCTTTAAGAGTGTTGTAAAAACATGAGGC 34 253 0 AGTGTTTAAA 0.634563 -48 ACCTAAAACAGATTTTATAAAAGGGGGGAAA 35 89 0 GATTTTTAAA 0.91298 -93 ****** **** Masking position 9 Map Score: 2.20108 Number of sites scoring better than the average of aligned sites = 174 Number in coding regions = 139 Number in noncoding regions = 35 Number of orfs with sites within 600 bp upstream = 36 Fraction of orfs with sites within 600 bp upstream = 0.0057822