AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00710_bsub_reg_100.orf -o00710_bsub_100.ace -a/home/amcguire/genomes/ORF_bsub.txt -z/home/amcguire/genomes/bsub.fna -g0.44 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.44 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 yjmC 104 similar to malate dehydrogenase #2 ykrV 94 similar to aspartate aminotransferase #3 ykrW 196 similar to ribulose-bisphosphate carboxylase #4 yloD 233 similar to guanylate kinase #5 yloI 80 similar to pantothenate metabolism flavoprotein #6 def 26 polypeptide deformylase #7 tkt 168 transketolase #8 aspB 22 aspartate aminotransferase #9 ypmA 142 ypmA #10 citH 43 malate dehydrogenase #11 citC 163 isocitrate dehydrogenase #12 pykA 42 pyruvate kinase #13 pfk 183 6-phosphofructokinase #14 malS 81 malate dehydrogenase (decarboxylating) #15 ytnP 145 ytnP #16 pckA 300 phosphoenolpyruvate carboxykinase #17 yugG 147 similar to transcriptional regulator (Lrp/AsnC family) #18 tpi 30 triose phosphate isomerase #19 pgk 300 phosphoglycerate kinase #20 ywlF 156 alternate gene name: ipc-32d; similar to ribose 5-phosphate epimerase (pentose phosphate) #21 fbaA 180 fructose-1,6-bisphosphate aldolase #22 ywfB 151 alternate gene name: ipa-80d #23 iolI 85 alternate gene name: yxdH; myo-inositol catabolism #24 iolG 22 myo-inositol 2-dehydrogenase #25 iolD 203 alternate gene name: yxdD; myo-inositol catabolism #26 fbp 300 fructose-1,6-bisphosphatase Motif number 1 TAAGTCGGTTGCCGGGCTTCATCGGGCTCGT 3 73 0 GCCGGCTTCA 0.991273 -124 ATTGTTTACAGACGGTCTTACTAGGCTAAAC 4 22 1 GACGGCTTAC 0.862147 -212 ATTGACGCAAGCCAGCCTCCAATGGTTCT 11 9 0 GCCAGCTCCA 0.978197 -155 GAAACCGGTTGCTGGGCTTCATAGGGCCTGT 16 60 1 GCTGGCTTCA 0.8995 -241 AAGGGAAGGGGACGGACTCCCTTTCCCTTTT 19 58 1 GACGGCTCCC 0.992157 -243 TTTTCTGAAAGCCGGTCTTCATGGAAAAAGG 19 83 0 GCCGGCTTCA 0.991273 -218 CTGGCTTTTAGACGAACTGCCCTGTGCCGAA 19 182 1 GACGACTGCC 0.877886 -119 GCCATATCCCGCCGAACTCCATGCTCAGC 23 9 0 GCCGACTCCA 0.9782 -77 GGGATATGGCGACAGCCTTCCTGCCGAACTC 23 30 1 GACAGCTTCC 0.951431 -56 CAGCCTTCCTGCCGAACTCCCTTCATATCTA 23 42 1 GCCGACTCCC 0.988418 -44 GCCAGACTCCCCCATCTGCGT 23 75 0 GCCAGCTCCC 0.988241 -11 ***** ***** Masking position 8 Map Score: 17.9126 Number of sites scoring better than the average of aligned sites = 219 Number in coding regions = 195 Number in noncoding regions = 24 Number of orfs with sites within 600 bp upstream = 20 Fraction of orfs with sites within 600 bp upstream = 0.00321234 Motif number 2 AAAAACTGAAAAGGAAGGAGGCACTTGC 1 87 1 AAGGAAGGAG 0.85909 -18 GAGCAGGCAGAGGGACGAGCCCGATGAAGC 3 59 1 AGGGACGAGC 0.900462 -138 TACAACACATAAGGAAGGGGATTTTT 7 153 1 AAGGAAGGGG 0.982699 -16 GCAAGGAAAAAGCCTAAAACTA 10 3 1 AAGGAAAAAG 0.732925 -41 CCCTAAAAACAATGAAAAGGGATCTCCATC 13 115 0 AATGAAAAGG 0.809699 -69 TATGCTCAGAAAGGAAGAGGCAGG 14 68 1 AAGGAAGAGG 0.979051 -14 GAGCTGGCGGAGGGACAGGCCCTATGAAGC 16 75 0 AGGGACAGGC 0.857438 -226 AAACTGCTATAAGGAAGTGGAACAG 18 16 1 AAGGAAGTGG 0.880488 -15 AAAGCGGACAAGGGAAGGGGACGGACTCCC 19 49 1 AGGGAAGGGG 0.979014 -252 TCATGGAAAAAGGGAAAGGGAGTCCGTCCC 19 66 0 AGGGAAAGGG 0.962293 -235 AGTAGAATATAGTGAAAAGCACATCATATG 20 59 1 AGTGAAAAGC 0.754174 -98 CACACGCTGGGAGGAAAAGCAG 20 145 1 GAGGAAAAGC 0.752798 -12 TGTAGATGGAAAGGAAGAGCCTTTTGTCGA 25 111 1 AAGGAAGAGC 0.976207 -93 AGCTATACCGAATGAAAGGCCATAGTTTGA 26 64 1 AATGAAAGGC 0.819484 -237 CAAATGGGGTAAGCAAGAGCTTAAAACAGC 26 215 0 AAGCAAGAGC 0.774812 -86 ********** Masking position 5 Map Score: 15.0411 Number of sites scoring better than the average of aligned sites = 996 Number in coding regions = 824 Number in noncoding regions = 172 Number of orfs with sites within 600 bp upstream = 172 Fraction of orfs with sites within 600 bp upstream = 0.0276261 Motif number 3 TCGATTGTCAGCCCGGAGTCTGCGCCAATCAAAC 4 147 1 GCCGACTGCG 0.816263 -87 TACTCCCACACCGCAAAAGCCGCTTTATGCGGCT 9 12 0 CCGAACCGCT 0.959504 -131 GTATCACAGAGCGGGAAATCCGCTTTTAAATAAA 9 55 0 GCGAACCGCT 0.991011 -88 CCGTCCATATGCGTCACGCCTCCGTCAAGCCAGG 15 115 0 GCGACCTCCG 0.90766 -31 AAAAAACGAGGAGAAACTTCCGCTAGAATTGACA 17 56 0 GAGACCCGCT 0.94665 -92 CTCTGTGATAGAGAAACGACCGCGTTTTAAGCAG 19 116 1 GAGACCCGCG 0.953607 -185 GGCGAAAGCGCCGGCAAAGCTGCTTAAAACGCGG 19 135 0 CCGAACTGCT 0.936723 -166 GTCTGTTCAAGCGATAACTCCGCTAGGGCAGATC 19 222 0 GCGAACCGCT 0.991011 -79 GAATCAAAGAGCGGACAGGCTGCGCGGTCAATAA 20 93 1 GCGCACTGCG 0.980383 -64 CGTGTGTGATGCGGCCCGCCCGCTTTATTGACCG 20 117 0 GCGCCCCGCT 0.987652 -40 AAGAAAATTCGCTTAACAACTGCGCAGGCGCTGA 25 49 1 GCTACCTGCG 0.889812 -155 ATGGCCTGCATCCTGCTCAAGCGCCTG 25 187 0 GCCCACTGCT 0.911353 -17 *** ** ***** Masking position 10 Map Score: 9.77902 Number of sites scoring better than the average of aligned sites = 539 Number in coding regions = 513 Number in noncoding regions = 26 Number of orfs with sites within 600 bp upstream = 22 Fraction of orfs with sites within 600 bp upstream = 0.00353357 Motif number 4 AGTTTGAAGAGGTTTTTTGAT 3 186 1 GGTTTTTTGA 0.935589 -11 TACTATTTATTGTTTTTTGTGTGTGCATTT 16 207 0 TGTTTTTTGT 0.903758 -94 CTTCCTTTATCGTTTTTTGTGTTTTGCTAA 16 274 0 CGTTTTTTGT 0.976222 -27 GTGTCACTCCCTTTTTTTGATGGTTGTATT 17 14 1 CTTTTTTTGA 0.876502 -134 AGTTTCTCCTCGTTTTTTCTTAGCATTCGT 17 72 1 CGTTTTTTCT 0.841678 -76 CATTATATCACGTTTTTTGACGAATGCTAA 17 91 0 CGTTTTTTGA 0.976222 -57 TATCACAGAGCGTTTTCTGAAAGCCGGTCT 19 96 0 CGTTTTCTGA 0.89542 -205 GACGGTTTCACGTTTTTCGTGCTGTATGCA 19 253 1 CGTTTTTCGT 0.89542 -48 TTTTTAAAGGGTTTTTTTGTTTGTATGGGA 22 44 1 GTTTTTTTGT 0.71518 -108 GAACTGTCAATGTTTTTTGAAAATATTGAT 22 80 0 TGTTTTTTGA 0.903758 -72 ********** Masking position 5 Map Score: 7.8647 Number of sites scoring better than the average of aligned sites = 528 Number in coding regions = 433 Number in noncoding regions = 95 Number of orfs with sites within 600 bp upstream = 99 Fraction of orfs with sites within 600 bp upstream = 0.0159011 Motif number 5 AAGAATATTTAAAATAATTTGTAAATAAAATGT 1 23 1 AAAAATTTTA 0.792053 -82 GGGATAATTCAAAATAATTTATAAAATCTATAT 3 15 1 AAAAATTTTA 0.792053 -182 TATAGAAAATAAAATGATTTTTCCTAACATTCA 11 87 0 AAAAGTTTTC 0.904523 -77 TAAGAAAAATAAAATGTTTTCTAAATATGAATT 11 120 1 AAAAGTTTTA 0.956586 -44 ATCTTATCGTAAAAGGGTTTGCAATGTCAATAT 16 132 1 AAAAGTTTCA 0.972328 -169 ATCCTCCTTCAAAATGGTTTGCATACAGCACGA 19 269 0 AAAAGTTTCA 0.972328 -32 CTTCTAGCGAAAAAAGCTTTCCACCCTAGCATG 21 127 0 AAAAGTTTCA 0.972328 -54 AAACCCTTTAAAAAGGGTTTTTAATTATAGGAA 22 25 0 AAAAGTTTTA 0.95656 -127 TCCCTTCGACAAAAGGCTCTTCCTTTCCATCTA 25 113 0 AAAAGTCTCC 0.759085 -91 CAAGAGCTTAAAACAGCTTTTCAGTACAGGTTG 26 199 0 AAACGTTTCA 0.879921 -102 **** * *** ** Masking position 8 Map Score: 7.03361 Number of sites scoring better than the average of aligned sites = 177 Number in coding regions = 132 Number in noncoding regions = 45 Number of orfs with sites within 600 bp upstream = 51 Fraction of orfs with sites within 600 bp upstream = 0.00819146 Motif number 6 GATAAGATTCGGACGAGAAACGAAACCTCTTTAGAC 3 142 1 GGAAAAAAAC 0.960469 -55 GCAGACTCCGGGCTGACAATCGAAATCATCCGATTG 4 134 0 GGAAATAAAT 0.958157 -100 AAAACCGCACGGAAAAAAATAACAACCTACATGATA 5 30 0 GGAAATCAAC 0.917967 -51 CATCAAAATTGGGTTACACTTTAAATTGAATGTTAG 11 61 1 GGAACTAAAT 0.826854 -103 TTTAAGGAATGTCACAAAAAATAAACGTGAGCCAAA 13 25 0 GTAAAAAAAC 0.679765 -159 AAAACATGCAGGGTAAACATAAAAATATG 14 4 0 GGACATAAAT 0.826854 -78 CATGTTTTCCGGCTAATAATGCAAACCTAGTACTAT 14 32 1 GGAAATAAAC 0.981704 -50 GGTAGCAAACGGCCCATAAAAAAAACAGACTCCTGT 15 23 0 GGAAAAAAAC 0.960469 -123 TGATAGGGGGGGGTGAAAATGGAAACAATGAAAATT 15 63 1 GGAAATAAAC 0.981704 -83 CTATATTGAGGGAAAACAATGGAAATGCACACACAA 16 185 1 GGAAATAAAT 0.958157 -116 ** * *** **** Masking position 6 Map Score: 6.5285 Number of sites scoring better than the average of aligned sites = 107 Number in coding regions = 85 Number in noncoding regions = 22 Number of orfs with sites within 600 bp upstream = 26 Fraction of orfs with sites within 600 bp upstream = 0.00417604 Motif number 7 CTACAAACACATTTTATTTACAAATTATTT 1 34 0 ATTTTATTTA 0.861807 -71 AACACCCCAAATTTTTCTTTACTTTTTTCA 2 17 1 ATTTTTCTTT 0.651043 -78 ATCATTTCAAGATTTTTTTAGAAGGTGAGA 2 71 1 GATTTTTTTA 0.659035 -24 GTAGGATGGTGTTTTATTTAAAAGCGGATT 9 43 1 GTTTTATTTA 0.836877 -100 AGGAAAAATCATTTTATTTTCTATATAAGA 11 95 1 ATTTTATTTT 0.68917 -69 AAAACATTTTATTTTTCTTATATAGAAAAT 11 110 0 ATTTTTCTTA 0.839938 -54 CATTCCTTAAATTTTATTTAAAAACAATTT 13 50 1 ATTTTATTTA 0.861807 -134 ATTTAAAAACAATTTATTTAATTGTATAAT 13 65 1 AATTTATTTA 0.763842 -119 ACAGGAGTCTGTTTTTTTTATGGGCCGTTT 15 23 1 GTTTTTTTTA 0.788435 -123 CACTGGATAAAATTTACTTAAAATTTTAAA 22 116 1 AATTTACTTA 0.789331 -36 TTGTTAAGCGAATTTTCTTACCCACAAACG 25 38 0 AATTTTCTTA 0.731304 -166 CAATATTGATGTTTTACTTTTCATTACGAA 26 102 0 GTTTTACTTT 0.678758 -199 ********** Masking position 5 Map Score: 4.76538 Number of sites scoring better than the average of aligned sites = 287 Number in coding regions = 193 Number in noncoding regions = 94 Number of orfs with sites within 600 bp upstream = 103 Fraction of orfs with sites within 600 bp upstream = 0.0165435 Motif number 8 ATAAATTATTTTGAATTATCCCATCG 3 3 0 TTGTTATCCT 0.892923 -194 CTCTTGCATCCTGAATCATCCGTTTGATTGGCGC 4 168 0 CTGTCATCGT 0.750997 -66 TTGGTTCACTTCCTTCTGAAATCT 12 29 0 TTGTCACTCT 0.954999 -14 CGTTTATTTTTTGTGACATTCCTTAAATTTTATT 13 34 1 TTGACATCCT 0.874324 -150 CTCCGTCCATATGCGTCACGCCTCCGTCAAGCCA 15 117 0 ATGTCACCCC 0.821032 -29 AGCACCTTGGTTGTCTCACTCAGTTGAACATAAT 16 16 1 TTGTCACCAT 0.883379 -285 TCTGTGTCACTCCCTTTTTTTGATG 17 2 1 CTGTCACCCT 0.97638 -146 TTTTTGATGGTTGTATTATGCCCTGAAATTGTCA 17 27 1 TTGTTATCCT 0.892994 -121 TTGATTCACACCTTTGCAATGTCA 17 134 0 TTGTCACCCT 0.989705 -14 TGTCCGCTCTTTGATTCACACCATATGATGTGCT 20 76 0 TTGTCACCCT 0.989705 -81 GAAGAAACAAATGAATCATGTCATTATGTTGCCG 21 17 1 ATGTCATTCT 0.786529 -164 GTAAGATTGTTTGCCTCATTTCTTCCACTTAAAA 26 158 0 TTGTCATTCT 0.929869 -143 *** **** ** * Masking position 8 Map Score: 8.83201 Number of sites scoring better than the average of aligned sites = 192 Number in coding regions = 160 Number in noncoding regions = 32 Number of orfs with sites within 600 bp upstream = 39 Fraction of orfs with sites within 600 bp upstream = 0.00626405 Motif number 9 TCAAGAGCAGGCAGAGGGACGAGCCCGATGA 3 55 1 GCAAGGGACG 0.866834 -142 AAGCCGCATAAAGCGGCTTTTGCGGT 9 6 1 GCAAAAGCGG 0.876769 -137 CATACTAGTATCACAGAGCGGGAAATCCGCT 9 65 0 TCAAGAGCGG 0.988762 -78 AGGTAAGGTTTCATAGGGAGGATGGAGATCC 13 95 1 TCAAGGGAGG 0.957092 -89 TTGCTGGGCTTCATAGGGCCTGTCCCTCCGC 16 68 1 TCAAGGGCCT 0.887536 -233 ATAAGATATTTCATTGAGCGGATACTCTTAT 16 108 0 TCATGAGCGG 0.932752 -193 CGTTTCTCTATCACAGAGCGTTTTCTGAAAG 19 103 0 TCAAGAGCGT 0.945432 -198 GTCTTTTTCGGCACAGGGCAGTTCGTCTAAA 19 188 0 GCAAGGGCAG 0.923778 -113 ATGGTGTGAATCAAAGAGCGGACAGGCTGCG 20 86 1 TCAAGAGCGG 0.988762 -71 *** ******* Masking position 3 Map Score: 7.25949 Number of sites scoring better than the average of aligned sites = 227 Number in coding regions = 207 Number in noncoding regions = 20 Number of orfs with sites within 600 bp upstream = 20 Fraction of orfs with sites within 600 bp upstream = 0.00321234 Motif number 10 CTTGGAGAGTGCCCAAAAAACTGAAAAGGAAG 1 72 1 GCCCAAAACT 0.785988 -33 GCCCGATGAAGCCCGGCAACCGACTTATAAAG 3 77 1 GCCCGGAACG 0.986328 -120 CGGAGTCTGCGCCAATCAAACGGATGATTCAG 4 160 1 GCCAATAACG 0.91711 -74 CCTCCGTCAAGCCAGGTCAACGTGATGTTTCC 15 99 0 GCCAGGCACG 0.967328 -47 GCCCTATGAAGCCCAGCAACCGGTTTCTCTGT 16 55 0 GCCCAGAACG 0.978373 -246 CCTTTGCAATGTCAAGAAATCTCATGACATTA 17 116 0 GTCAAGAACT 0.814895 -32 TCGTCTAAAAGCCAGGGCAGCGGCCTTAGGCG 19 165 0 GCCAGGCACG 0.967328 -136 TTTGCATACAGCACGAAAAACGTGAAACCGTC 19 253 0 GCACGAAACG 0.650716 -48 GTTGTCAGAAAATCTGCAAACAGGT 20 4 1 GTCAGAAACT 0.697051 -153 AGGCTGCGCGGTCAATAAAGCGGGCGGGCCGC 20 109 1 GTCAATAACG 0.802567 -48 ACGATTTTCGGTCATGGAAACGTATTAGGGAT 25 151 1 GTCATGAACG 0.814284 -53 ****** ** ** Masking position 9 Map Score: 4.49398 Number of sites scoring better than the average of aligned sites = 403 Number in coding regions = 377 Number in noncoding regions = 26 Number of orfs with sites within 600 bp upstream = 28 Fraction of orfs with sites within 600 bp upstream = 0.00449727 Motif number 11 CCAAGCGAAACCCCTACAAACACATTTTATT 1 46 0 CCCCTCAAAC 0.986757 -59 TTTTTTGGGCACTCTCCAAGCGAAACCCCTA 1 61 0 ACTCTCAAGC 0.792353 -44 ATCAAAAAACCTCTTCAAACTGCAATCGCG 3 177 0 CCTCTCAAAC 0.919867 -20 TTCTACGTTCCCCCTGTAAAATAGACGTCTC 4 55 0 CCCCTTAAAA 0.871483 -179 TTTGTTACCCTCCAAGACGTGAGATC 6 10 0 ACCCTCAAGA 0.900991 -17 TGCGTCACGCCTCCGTCAAGCCAGGTCAACG 15 109 0 CTCCGCAAGC 0.82346 -37 CTAGGAGATCCTCCTTCAAAATGGTTTGCAT 19 278 0 CTCCTCAAAA 0.871483 -23 CTATATTCTACTCCTTCACGCAGGATTTGCA 20 40 0 CTCCTCACGC 0.823461 -117 AAACAAAAAAACCCTTTAAAAAGGGTTTTTA 22 35 0 ACCCTTAAAA 0.626826 -117 GATAATTATTCCCATACAAACAAAAAAACCC 22 52 0 CCCATCAAAC 0.854461 -100 AGTCCTCTAGCCCCTCTAAGCTATACCGAAT 26 46 1 CCCCTTAAGC 0.961193 -255 ***** ***** Masking position 8 Map Score: 4.25785 Number of sites scoring better than the average of aligned sites = 449 Number in coding regions = 405 Number in noncoding regions = 44 Number of orfs with sites within 600 bp upstream = 50 Fraction of orfs with sites within 600 bp upstream = 0.00803084 Motif number 12 GGCGGAGATGATATTGCCAAATCCGATATT 4 105 0 ATATTGCCAA 0.839691 -129 GAGGAATACGATATTGCCGTATTCCTCTTA 7 13 0 ATATTGCCGT 0.951667 -156 GTGTAACCCAATTTTGATGTCTGAACAAGA 11 50 0 ATTTTGATGT 0.617749 -114 TTAATCATATATGTTGCTGAGGTGAATGGA 13 162 1 ATGTTGCTGA 0.87546 -22 CTTCTGAATCATATTGACATTGCAAACCCT 16 145 0 ATATTGACAT 0.765845 -156 TCATGTCATTATGTTGCCGATTTGTCGAAA 21 32 1 ATGTTGCCGA 0.900499 -149 CATGACCCATATATTGCTGTCATATGTAAA 21 101 0 ATATTGCTGT 0.938626 -80 TTTTTTGAAAATATTGATAATTATTCCCAT 22 68 0 ATATTGATAA 0.674312 -84 AGTGTAGTCAATATTGATGTTTTACTTTTC 26 110 0 ATATTGATGT 0.88611 -191 ********** Masking position 5 Map Score: 1.77923 Number of sites scoring better than the average of aligned sites = 450 Number in coding regions = 415 Number in noncoding regions = 35 Number of orfs with sites within 600 bp upstream = 33 Fraction of orfs with sites within 600 bp upstream = 0.00530035 Motif number 13 TTATCTCTCAGCCGCTAGCTGCAAGAATTA 3 117 0 GCCGCTAGCT 0.948533 -80 TTTTTCATCCTCCAGTTTGAACAAATA 9 126 0 TCCTCCAGTT 0.798909 -17 AATGAGGTTAGCCTCTTGTTCAGACATCAA 11 37 1 GCCTCTTGTT 0.926663 -127 GAAATCTTCAGCCTTCAGCTGTACA 12 6 0 GCCTTCAGCT 0.945313 -37 TAAACGTGAAGCCTTTGGCTCACGTTTATT 13 12 1 GCCTTTGGCT 0.845111 -172 CCTGCCTCTTCCTTTCTGAGCAT 14 69 0 GCCTCTTCCT 0.80643 -13 TTTTTTATGGGCCGTTTGCTACCATGATGA 15 36 1 GCCGTTTGCT 0.908369 -110 GGCCTGTCCCTCCGCCAGCTCGGGATAAGA 16 84 1 TCCGCCAGCT 0.873194 -217 TGACAGCCACTCCTTCTGTTGG 24 3 0 TCCTTCTGTT 0.681221 -20 GAAAGGAAGAGCCTTTTGTCGAAGGGATCT 25 119 1 GCCTTTTGTC 0.664677 -85 ATGGCCTGCATCCTGCTCAAGCGCCTG 25 187 0 GCATCCTGCT 0.765045 -17 AAGCCTATAGTCCTCTAGCCCCTCTAAGCT 26 38 1 TCCTCTAGCC 0.786559 -263 ********** Masking position 2 Map Score: 3.55259 Number of sites scoring better than the average of aligned sites = 1360 Number in coding regions = 1235 Number in noncoding regions = 125 Number of orfs with sites within 600 bp upstream = 98 Fraction of orfs with sites within 600 bp upstream = 0.0157404 Motif number 14 TCGTCCCTCTGCCTGCTCTTGATAAGAAAA 3 47 0 GCCTGCTCTT 0.890822 -150 TGAATTCTCCCCCTCTGCACTTTACAA 5 64 0 TCCCCCTCTG 0.813759 -17 AAAGCGGATTTCCCGCTCTGTGATACTAGT 9 63 1 TCCCGCTCTG 0.963504 -80 GATACTCTTATCCCGAGCTGGCGGAGGGAC 16 89 0 TCCCGAGCTG 0.823822 -212 AAGCAGCTTTGCCGGCGCTTTCGCCTAAGG 19 144 1 GCCGGCGCTT 0.980923 -157 CGCGCAGCCTGTCCGCTCTTTGATTCACAC 20 89 0 GTCCGCTCTT 0.826235 -68 TAACAACTGCGCAGGCGCTGATTAAATTCT 25 62 1 GCAGGCGCTG 0.949121 -142 TAGGGATCGGGCAGGCGCTTGAGCAGGATG 25 176 1 GCAGGCGCTT 0.921636 -28 ********** Masking position 9 Map Score: 1.14506 Number of sites scoring better than the average of aligned sites = 651 Number in coding regions = 606 Number in noncoding regions = 45 Number of orfs with sites within 600 bp upstream = 38 Fraction of orfs with sites within 600 bp upstream = 0.00610344 Motif number 15 ********** No masking Map Score: 9.66581e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0