AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i02020_bsub_reg_300.orf -o02020_bsub_300.ace -a/home/amcguire/alignace/lib/ORF_bsub.txt -z/skink1/amcguire/genomes/bsub.fna -g0.44 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.44 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: yfmA 40 yfmA yfiH 26 yfiH iolG 22 myo-inositol 2-dehydrogenase Input sequences: #1 ybcO 300 ybcO #2 ybcP 66 ybcP #3 ybcQ 43 similar to hypothetical proteins #4 ybdB 64 similar to ABC transporter (permease) #5 ybdD 46 ybdD #6 ybdE 105 similar to hypothetical proteins #7 ybdG 245 ybdG #8 ybdJ 91 similar to two-component response regulator [YbdK] #9 ycbA 300 alternate gene name: yzgA; similar to two-component sensor histidine kinase [YcbB] #10 yczA 300 yczA #11 ycbL 96 similar to two-component response regulator [YcbM] #12 yccH 143 similar to two-component response regulator [YccG] #13 yclJ 212 similar to two-component response regulator [YclK] #14 ydbF 69 similar to two-component sensor histidine kinase [YdbG] #15 ydfH 300 similar to two-component sensor histidine kinase [YdfI] #16 yeeG 135 yeeG #17 rapH 161 response regulator aspartate phosphatase #18 yeeI 160 similar to hypothetical proteins #19 yeeK 134 similar to hypothetical proteins #20 yesE 78 alternate gene name: yeeL #21 cotJA 126 cotJA #22 yesJ 124 alternate gene name: yeeN, yfxC, yfxD; similar to hypothetical proteins #23 yesL 114 similar to hypothetical proteins from B. subtilis #24 yflT 35 yflT #25 pel 190 pectate lyase #26 yflS 126 similar to 2-oxoglutarate/malate translocator #27 citS 126 two-component sensor histidine kinase #28 glvA 300 6-phospho-alpha-glucosidase #29 yfiA 64 similar to hypothetical proteins #30 yfiB 105 similar to ABC transporter (ATP-binding protein) #31 yfiD 154 similar to hypothetical proteins #32 yfiF 93 similar to transcriptional regulator (AraC/XylS family) #33 yfiG 174 similar to metabolite transport protein #34 yfiJ 123 similar to two-component sensor histidine kinase [YfiK] #35 yhxA 300 similar to adenosylmethionine-8-amino-7-oxononanoate aminotransferase #36 glpP 27 transcription antiterminator #37 glpF 178 glycerol uptake facilitator #38 glpD 140 glycerol-3-phosphate dehydrogenase #39 yhxB 131 similar to phosphomannomutase #40 yhcY 148 similar to two-component sensor histidine kinase [YhcZ] #41 ykoG 300 similar to two-component response regulator [YkoH] #42 ykuA 300 similar to penicillin-binding protein #43 kinA 163 two-component sensor histidine kinase #44 abh 283 transcriptional regulator #45 kinC 189 two-component sensor histidine kinase #46 yocC 170 yocC #47 yocD 63 similar to immunity to bacteriotoxins #48 yocE 161 similar to fatty-acid desaturase #49 yocF 119 similar to two-component sensor histidine kinase [YocG] #50 resD 80 two-component response regulator #51 resC 135 essential protein similar to cytochrome c biogenesis protein #52 resA 131 essential protein similar to cytochrome c biogenesis protein #53 ypuL 91 similar to hypothetical proteins #54 dacB 122 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*) #55 ypuI 54 similar to hypothetical proteins from B. subtilis #56 ypuG 280 similar to hypothetical proteins #57 spo0A 275 two-component response regulator #58 spoIVB 174 spoIVB #59 recN 36 recN #60 ahrC 134 transcriptional regulator #61 yqiE 246 similar to hypothetical proteins #62 yqiC 85 similar to exodeoxyribonuclease VII (small subunit) #63 yqiB 137 similar to exodeoxyribonuclease VII (large subunit) #64 yqhZ 263 similar to transcription termination #65 accB 155 acetyl-CoA carboxylase subunit (biotin carboxyl carrier subunit) #66 spoIIIAC 22 spoIIIAC #67 spoIIIAA 75 spoIIIAA #68 yqhV 144 alternate gene name: yqgE #69 efp 24 elongation factor P #70 yqhS 86 similar to 3-dehydroquinate dehydratase #71 yqhR 226 yqhR #72 yrkP 267 similar to two-component response regulator [YrkQ] #73 spo0B 300 sporulation initiation phosphoprotein #74 lytS 166 two-component sensor histidine kinase #75 phoP 211 two-component response regulator #76 citH 43 malate dehydrogenase #77 citC 163 isocitrate dehydrogenase #78 citZ 300 citrate synthase II #79 ytsA 96 similar to two-component response regulator [YtsB] #80 ytrD 29 similar to cytochrome c oxidase subunit #81 ytrA 300 similar to transcriptional regulator (GntR family) #82 patB 80 aminotransferase #83 kinB 125 two-component sensor histidine kinase #84 kapB 45 kinase-associated protein B #85 yufL 120 similar to two-component sensor histidine kinase [YufM] #86 comA 80 two-component response regulator #87 comQ 184 transcriptional regulator #88 degQ 300 alternate gene name: sacQ #89 yvqA 277 similar to two-component response regulator [YvqB] #90 yvqF 33 yvqF #91 yvqG 249 yvqG #92 yvqH 26 similar to hypothetical proteins from B. subtilis #93 yvqI 161 yvqI #94 yvqJ 176 similar to macrolide-efflux protein #95 yvqK 22 similar to hypothetical proteins #96 yvrC 300 similar to iron-binding protein #97 yvrI 300 yvrI #98 yvfT 132 similar to two-component sensor histidine kinase [YvfU] #99 yvfR 283 similar to ABC transporter (ATP-binding protein) #100 yvcP 300 similar to two-component response regulator [YvcQ] #101 degU 82 two-component response regulator #102 degS 216 two-component sensor histidine kinase #103 ywpD 300 similar to two-component sensor histidine kinase #104 spo0F 165 two-component response regulator #105 yxjO 129 similar to transcriptional regulator (LysR family) #106 yxjN 77 similar to hypothetical proteins from B. subtilis #107 yxdJ 108 similar to two-component response regulator [YxdK] #108 iolI 85 alternate gene name: yxdH; myo-inositol catabolism #109 iolD 203 alternate gene name: yxdD; myo-inositol catabolism #110 iolC 23 alternate gene name: yxdC; myo-inositol catabolism #111 iolB 74 alternate gene name: yxdB; myo-inositol catabolism #112 iolA 300 methylmalonate-semialdehyde dehydrogenase #113 yycF 300 similar to two-component response regulator [YycG] Motif number 1 GGATAGCTTGTCAGCTTTTCTATTTTTAAAG 1 131 1 TCGCTTTTCT 0.792825 -170 AAAGCAATTTGCAGGTTTTCTCCCGATTCCC 9 134 1 GCGGTTTTCT 0.816225 -167 CCAGTATATATCCGTCTTTTTCAATAAACCG 9 205 0 TCGTCTTTTT 0.885748 -96 TTGATATCCTCCTTTCTAACTCATCTG 10 284 0 TCTCCTTTCT 0.877402 -17 GGCTGTTATGGCCTGCTTTTTTTTGTCCCGG 19 21 1 GCTGCTTTTT 0.905381 -114 TCCGGCTCCTCCTTTCTCAAAAACAAT 21 110 0 TCTCCTTTCT 0.877402 -17 TATTCCTCCTTCATGTTTTCTATATTTCTT 24 10 0 TCTGTTTTCT 0.726039 -26 GCAGACCGCGTCTGCCTTTTTCTTT 27 5 0 TCGCCTTTTT 0.930439 -122 GCAGACGCGGTCTGCCTTTTTTTATTTTCAC 27 21 1 TCGCCTTTTT 0.930439 -106 CTTTACTATGGCGGTCTTTTTGACGGCAAAC 30 40 0 GCGTCTTTTT 0.888992 -66 TTCTTCTCTATCATGCTTTTTAATCGTGACT 37 142 1 TCTGCTTTTT 0.902563 -37 GCTGTTGTGGTCTCTTTTTCTATTTACCGTG 38 101 1 TCCTTTTTCT 0.429416 -40 TTGTAAATGATCCGGCTTTTTCTTTTTCTCA 40 31 1 TCGGCTTTTT 0.937611 -118 TCCTGTTTTTTTGGTAAAATA 41 1 1 TCTGTTTTTT 0.753268 -300 CCGTTACATAGCTTCCTTTTTTTTGAACCGT 42 90 1 GCTCCTTTTT 0.894921 -211 TGTTTCCTTTGCTCTTTTTCTTTGGTTCACG 42 269 0 GCCTTTTTCT 0.437387 -32 TGAAAAAGTTTCCCGCTTTCTATAAGAATTA 44 179 0 TCCGCTTTCT 0.815718 -105 ATGATATCACTCCGCCTTTTTTAGCATAATT 45 11 0 TCGCCTTTTT 0.930439 -179 TGATATCATCTCCGCCTTTTTTGCGTGCCAA 45 33 1 TCGCCTTTTT 0.930439 -157 TCCGATTCCTCCTTTTTCACAGGTTAG 46 7 1 TCTCCTTTTT 0.891829 -164 ATACTAGAAGGCTTCCTTTTTATTGTTGGAG 49 32 1 GCTCCTTTTT 0.894921 -88 TTTTCTTTATGCGGCCTTTCTTGTGTATTTA 51 50 1 GCGCCTTTCT 0.923042 -86 AAACGGCGTTTTTTTTAGATTTGGCA 53 6 1 GCTTTTTTTT 0.61932 -86 CGTTTACTCTCCCTTTTTCAGGGAGAGT 54 8 1 TCCCCTTTTT 0.819449 -115 GTTTAATGAATCGCGCTTTTTCATCATCATA 55 13 1 TCCGCTTTTT 0.836046 -42 TAGAGGCCGGGCGTTCTTTTTTCCTTTTATC 56 53 0 GCTTCTTTTT 0.83154 -228 GGAGTTTCCGGCAGTTTTTTTATTTTGATCC 57 16 1 GCGTTTTTTT 0.725232 -260 TTCCGGTACATCTGCTTTTTTTTCTTTTAAC 60 14 0 TCGCTTTTTT 0.815107 -121 GCGCTATTATTCCTTTTTTCTGCATTCATGT 60 52 1 TCTTTTTTCT 0.577545 -83 ATGTCATGTTTCATTTTTTTTCACGTCTG 62 9 0 TCTTTTTTTT 0.611638 -77 TAAAGCCAGGGCGGGTTTTCTTTAGTTATGG 63 85 1 GCGGTTTTCT 0.816225 -53 GGCTATGTAAGCCGGCTTTCTTCATGCTTTG 64 75 0 GCGGCTTTCT 0.930919 -189 CGCTTGTTTAGCGGGCTTTTTTCCCTCATTC 65 11 0 GCGGCTTTTT 0.939483 -145 CGCTAAACAAGCGGGCTTTTTGCGTTGCTGT 65 29 1 GCGGCTTTTT 0.939483 -127 CAGAGCCTCCTCCTTTCTACCGATTGGC 67 58 0 TCTCCTTTCT 0.877402 -18 CCAAATGGGAGCAGGCTTTTTTTGTGCCCAA 68 33 1 GCGGCTTTTT 0.939483 -112 TGAAGAGTCATCATTTTTTTTAGAAAATGTG 72 112 1 TCTTTTTTTT 0.611638 -156 AATATCATGTTCCTTTTTTCTGGCTTTGGTT 73 174 0 TCTTTTTTCT 0.577545 -127 AGCAAGCCTTTCTCTCTTTTTA 75 2 0 TCCTCTTTTT 0.724558 -210 AATACTTGCATCGTGCTTTTTAAGTAAGCCT 78 226 1 TCTGCTTTTT 0.902563 -75 GGCTGAGACAGCCGGCTTTTTCTATAGCGCA 79 23 1 GCGGCTTTTT 0.939483 -74 GATCGCTTGTTCTTTTTTTCTTGTTCTTGTG 81 196 1 TCTTTTTTCT 0.577545 -105 TACATCTTCCTCGCTCTTTTTCTCTTCCTTT 89 132 1 TCCTCTTTTT 0.724558 -146 GCTCTTTTTCTCTTCCTTTCTTCCCTTAACC 89 144 1 TCTCCTTTCT 0.877402 -134 CCTGGTGTCCGCCTCCTTTCTTCTGCCTAGT 90 12 0 GCTCCTTTCT 0.880851 -22 CTGCCGGTATTCTGGTTTTTTTCGCCGTCGT 91 142 1 TCGGTTTTTT 0.832021 -108 TCAAATACATGCCGGCTTTTTTTGTTTTTCA 94 36 1 GCGGCTTTTT 0.939483 -141 GAATAGTAAATCGGTCTTTTTCTTTTTGTTA 100 211 0 TCGTCTTTTT 0.885748 -90 CGCCGAGATGGCGTGTTTTTTTGTGCGGTGT 107 24 1 GCTGTTTTTT 0.759251 -85 ** ******** Masking position 7 Map Score: 59.6553 Number of sites scoring better than the average of aligned sites = 1313 Number in coding regions = 1000 Number in noncoding regions = 313 Number of orfs with sites within 600 bp upstream = 315 Fraction of orfs with sites within 600 bp upstream = 0.0505943 Motif number 2 TAAGGGCAAAGTCAAATGTGAAAAAAAACTGTT 7 159 1 GTAAAGGAAA 0.81593 -87 CACCTCCTTTAAGAAACACAAAAAACCCCCGTC 10 218 0 AAAAAAAAAA 0.777013 -83 ACTAACAATTGTGAAACGCAAAACCTTCTGTTT 13 142 1 GTAAAGAAAA 0.839455 -71 GAAAGTGAAAAACACAAAGGGTGCTAACC 26 7 1 GAAAAAAAAG 0.75198 -120 TTAATTAATTAAAAAACACAAAGGTTAGCACCC 26 29 0 AAAAAAAAAG 0.617897 -98 AATGGATTTTGAAAAATGAGAAAATTCCCTGTG 27 65 1 GAAAAGGAAA 0.904106 -62 TTAAGATTACAAAAAAGGTAAAAAAACCAAATC 28 130 1 AAAAAGAAAA 0.855735 -171 TAACAAGGCGGACAAAAATAAAAAATCCCCCTG 32 37 0 GAAAAAAAAA 0.867256 -57 ACTTTTGGATGAGAAAAAGAAAAAGCCGGATCA 40 38 0 GAAAAAAAAA 0.867256 -111 AAGTGAAGCAATGAAATACAAAAAACTGGTATA 40 91 1 ATAAAAAAAA 0.620965 -58 TGTTTTTTTGGTAAAATAAAAAACTGCATATCC 41 14 1 GTAAAAAAAA 0.754399 -287 CTAACGGTTCAAAAAAAAGGAAGCTATGTAACG 42 91 0 AAAAAAGAAG 0.578219 -210 ACCCTCCAACAATAAAAAGGAAGCCTTCTAGTA 49 33 0 AAAAAAGAAG 0.578219 -87 CATACGCGGGAATAAAGATAAAAAGGGCAGGCC 51 107 1 AAAAAAAAAA 0.777013 -29 TTCAAAAAGTAAGAAATGTGAAATGAACGTGCA 52 68 1 AAAAAGGAAA 0.834124 -64 CCATAGAAGGGATAAAAGGAAAAAAGAACGCCC 56 43 1 GAAAAGAAAA 0.917502 -238 GACGTTAAAAGAAAAAAAAGCAGATG 60 4 1 GTAAAGAAAA 0.839455 -131 CAGTTTATATGAAAAATGAAAAGGAAAAGCGCG 61 130 1 GAAAAGAAAG 0.837693 -117 CAGACGTGAAAAAAAATGAAACATGACATTT 62 9 1 AAAAAAGAAA 0.747095 -77 GATAAAGAGGATCAAAGGAGAAAGAAA 64 247 1 ATAAAGGAAA 0.702753 -17 GTAGTAACCTATAAAAAAAGAAATTTCATACAT 65 119 1 ATAAAAGAAA 0.581389 -37 ACATTGCCGTGATAAATGGGAAAGGAGTATTGA 72 12 0 GAAAAGGAAA 0.904106 -256 CCTTACAATGGATAAATATAAAGACCGAATCTT 72 70 1 GAAAAAAAAG 0.75198 -198 TTCATTTATAGTAAAAAGAGAAAGGCTGTATTA 75 33 0 GTAAAGGAAA 0.81593 -179 TTTTCTATATAAGAAAAATAAAATGTTTTCTAA 77 111 1 AAAAAAAAAA 0.777013 -53 TACACTTGATAAAAAAGGAAAAAGTGCGGTGAG 79 70 1 AAAAAGAAAA 0.855735 -27 GGAGGCAGTTATGAAACATAAAAAACGAAACAA 81 130 1 ATAAAAAAAA 0.620965 -171 AATATTAGAAGTAAAATATAAAATTCCTTTATT 83 57 0 GTAAAAAAAA 0.754399 -69 AGTCTTTTTTATAAAATGGAAAAGAGTGAGTAA 86 45 1 ATAAAGAAAA 0.736064 -36 TATGATTGTTAAAAAACGAAAAACCTGCTGTCC 87 73 1 AAAAAGAAAA 0.855735 -112 CAATAATGAGGAGAAAAGCAAAGCACCAAAATA 89 81 1 GAAAAGAAAG 0.837693 -197 AACATTGTGGGATAAAAATGAAAAGAATATGTG 89 187 1 GAAAAAGAAA 0.847062 -91 AAAGTGAAAAGGAAAGCCGGCGTGTT 94 4 1 GTAAAGAAAG 0.70816 -173 TTGACAGAGTGAAAAACAAAAAAAGCCGGCATG 94 43 0 GAAAAAAAAA 0.867256 -134 ATTTTTTGTCGTAAAATGGGAAATTGACAGAGT 94 66 0 GTAAAGGAAA 0.81593 -111 ATTATTGACTGAAAAATGGAAAAATGAGATATT 94 110 1 GAAAAGAAAA 0.917502 -67 ATGATAGAATGATAAAGGTAAAATTTTCATAAT 100 179 0 GAAAAGAAAA 0.917502 -122 ATTCTATCATAACAAAAAGAAAAAGACCGATTT 100 202 1 AAAAAAAAAA 0.777013 -99 ATCAGTATACAACAAAAGAGAAAATGCTCAGAA 104 39 1 AAAAAGGAAA 0.834124 -127 AACAACTGGCGATAAAGGTGAAACATGTGTTTT 113 136 1 GAAAAGGAAA 0.904106 -165 GTCAAAAGATAAAAAAAATAAAGGTTTAGAAAA 113 169 0 AAAAAAAAAG 0.617897 -132 ** *** * **** Masking position 6 Map Score: 38.0815 Number of sites scoring better than the average of aligned sites = 1046 Number in coding regions = 816 Number in noncoding regions = 230 Number of orfs with sites within 600 bp upstream = 233 Fraction of orfs with sites within 600 bp upstream = 0.0374237 Motif number 3 TTGGCCGTCACCTCCTTTAAGAAACACAAA 10 229 0 CCTCCTTTAA 0.865494 -72 TTGATATCCTCCTTTCTAACTCATCTG 10 284 0 CCTCCTTTCT 0.919261 -17 CGGCTTCCCTCCTTCTCTATGAGATAT 17 145 0 CCTCCTTCTC 0.838598 -17 ATTTACTCTCTCCTTCACATAGGTTACA 19 117 0 TCTCCTTCAC 0.751459 -18 TCCGGCTCCTCCTTTCTCAAAAACAAT 21 110 0 CCTCCTTTCT 0.919261 -17 GTCGATATTCCTCCTTCATGTTTTCTATA 24 17 0 CCTCCTTCAT 0.940834 -19 AAATAGGTCTCCTCCTATATACTTGTTTTC 26 107 0 CCTCCTATAT 0.777486 -20 ATGACGACCTCCTTGATAACGTTTACA 28 284 0 CCTCCTTGAT 0.940834 -17 AGACTGCCCTCCTTTTCGGGAGGGTTT 30 8 1 CCTCCTTTTC 0.904028 -98 TTTATCCTCCTTGATAAATGTTATC 31 140 0 CCTCCTTGAT 0.940834 -15 TACGTTTCCTCCTTGTTGTCACGGTAA 38 124 0 CCTCCTTGTT 0.895315 -17 AAATGAGTATTCTCCTTCTATTCTTATGGT 43 71 0 TCTCCTTCTA 0.374002 -93 TCCGATTCCTCCTTTTTCACAGGTTAG 46 8 1 CCTCCTTTTT 0.939414 -163 ACACATCATGCCTCCTATATGACATTTGTC 48 75 0 CCTCCTATAT 0.777486 -87 TATTAGAAGACCTCCTTTATCA 49 3 0 CCTCCTTTAT 0.966476 -117 GGTGCTTCCTCCTTTAATGTGCTTTTA 56 8 1 CCTCCTTTAA 0.865494 -273 CAGAGCCTCCTCCTTTCTACCGATTGGC 67 58 0 CCTCCTTTCT 0.919261 -18 GTTTAATGTCCTCCTATATTCCAA 69 6 0 CCTCCTATAT 0.777486 -19 ACAATCTCTCCTTTTCGCGAGGGTTT 70 71 0 TCTCCTTTTC 0.746717 -16 GTCTCTCTTCTCCTTTATGGCTAGTTTT 76 26 0 TCTCCTTTAT 0.900228 -18 ATATAACATCTCCTTTTCAATAAATTTC 78 283 0 TCTCCTTTTC 0.746717 -18 TTCCATTTTTTCTCCTTTTTACGAATTACG 85 26 1 TCTCCTTTTT 0.829143 -95 TTTCTCCTTGATCCGGACAGAA 87 173 0 TCTCCTTGAT 0.832687 -12 AGATTCTTAATCTCCTTGATTTTAACGGGT 88 44 0 TCTCCTTGAT 0.832687 -257 CTGGTGTCCGCCTCCTTTCTTCTGCCTAGT 90 12 0 CCTCCTTTCT 0.919261 -22 ACCCTGAATCTCCTTTACAGAC 95 5 0 TCTCCTTTAC 0.845714 -18 AAGCCACGCCTCCTTGTATTATTGTTCT 101 65 0 CCTCCTTGTA 0.656229 -18 AAGTGAATCCTCCTTTATAACGTACAAT 104 9 1 CCTCCTTTAT 0.966476 -157 GAAATATCTCCTTCACTGCAAGTTAT 105 114 0 TCTCCTTCAC 0.751459 -16 TCTTATTGCCTCCTTCATTAGTAAACAC 112 283 0 CCTCCTTCAT 0.940834 -18 ********** Masking position 6 Map Score: 39.2288 Number of sites scoring better than the average of aligned sites = 328 Number in coding regions = 116 Number in noncoding regions = 212 Number of orfs with sites within 600 bp upstream = 260 Fraction of orfs with sites within 600 bp upstream = 0.0417604 Motif number 4 ATATACAAAATCCCCCTTACTTCGACAATT 1 207 1 TCCCCCTTAC 0.904937 -94 AAAAGAGCCCCTCTCCTCGTTTTAAA 5 31 0 GCCCCTCTCC 0.343445 -16 CCTTTCAGTCCTCCTTATCTTTCAGCTG 6 88 0 TCCTCCTTAT 0.656902 -18 CGGGTTTCTCTCCCCGTTACCAAGAGAGGA 10 98 1 TCCCCGTTAC 0.520698 -203 TTGATATCCTCCTTTCTAACTCATCT 10 285 0 TCCTCCTTTC 0.882147 -16 CTGGGGCGCGTCCCCTTGCTGATAAATTAA 13 53 1 TCCCCTTGCT 0.747659 -160 TCATAATCATGCCTCCTGCCTCATACCTAT 21 73 1 GCCTCCTGCC 0.692533 -54 TCCGGCTCCTCCTTTCTCAAAAACAA 21 111 0 TCCTCCTTTC 0.882147 -16 TGTTTTCCGATCCCCTTTTCCATTCTACTC 26 84 0 TCCCCTTTTC 0.846057 -43 CTGCAATCCCCTTGCCGAAATAACGG 32 7 1 TCCCCTTGCC 0.868535 -87 AAATAAAAAATCCCCCTGCCGTTATTTCGG 32 25 0 TCCCCCTGCC 0.952524 -69 GGAAGCTGCATCCTCTTTCTTCTTGAGAAA 35 140 1 TCCTCTTTCT 0.769054 -161 TAATAAAACATCCCCTTTCTCAAGAAGAAA 35 155 0 TCCCCTTTCT 0.881309 -146 ACCTGAGATCTCCCCCTTTCGGCACGTAAA 39 45 0 TCCCCCTTTC 0.943472 -87 TGAAAAAGTTTCCCGCTTTCTATAAGAATT 44 180 0 TCCCGCTTTC 0.653821 -104 TCCGATTCCTCCTTTTTCACAGGTTA 46 7 1 TCCTCCTTTT 0.770478 -164 GTTTTCCCCCTGCTTTCCTTCTGT 50 67 0 TCCCCCTGCT 0.899979 -14 TGCCCCCTTCCCCCTATTGCA 52 121 0 GCCCCCTTCC 0.926396 -11 AGGCTTTTTCTCCCGCTTCTGCGCTCCGAG 56 114 1 TCCCGCTTCT 0.718445 -167 TCTCCTTTGATCCTCTTTATCCGCTTGTCG 64 238 0 TCCTCTTTAT 0.386676 -26 CAGAGCCTCCTCCTTTCTACCGATTGG 67 59 0 TCCTCCTTTC 0.882147 -17 AATAACGACTTCCCCCCTCCCATTCCATTT 87 126 0 TCCCCCCTCC 0.863874 -59 CCTGGTGTCCGCCTCCTTTCTTCTGCCTAG 90 13 0 GCCTCCTTTC 0.652017 -21 CGCAAATCCTTCCCCGTTCCGC 91 3 0 TCCCCGTTCC 0.85159 -247 GCAGATCCTCCTTTCGTTTTCCTTG 93 147 0 TCCTCCTTTC 0.882147 -15 ATCTCCCATGTCCTCTTTCTTTTAAACTGC 99 107 0 TCCTCTTTCT 0.769054 -177 GTTGATCCCCCTTATATGTACATCA 100 286 0 TCCCCCTTAT 0.810217 -15 ACTGAACCACTCCCGTTTCTTACACTGCTG 107 89 0 TCCCGTTTCT 0.456594 -20 GCCAGACTCCCCCATCTGCGTTTTAGA 108 69 0 TCCCCCATCT 0.510628 -17 AGAGAAGCCCTCCTCTTTCTATTGGCAGAA 111 55 0 TCCTCTTTCT 0.769054 -20 ATTTTGATTTTCCTCCTGCCGAATGACTTC 113 280 0 TCCTCCTGCC 0.899979 -21 ********** Masking position 3 Map Score: 27.6559 Number of sites scoring better than the average of aligned sites = 443 Number in coding regions = 288 Number in noncoding regions = 155 Number of orfs with sites within 600 bp upstream = 189 Fraction of orfs with sites within 600 bp upstream = 0.0303566 Motif number 5 TTTGTAAGTCAAGGTCAGGAAAAAAAA 4 48 1 AAGGAAAAAA 0.944633 -17 ACCGAAGGATACAATATGAAAATAAATTTCTGATT 7 200 0 ACAGAAATAA 0.264969 -46 TAGTAGTCCAAAGGTATGAAAAAAATATGAACAAT 13 83 1 AAGGAAAAAA 0.944633 -130 ATCCCACCGCAAAGACCGCAAAAAAACCAAAAGGC 25 41 0 AAGGAAAAAA 0.944633 -150 TTTTCTTACGAAGGAGTGAAAATAAAAAAAGGCAG 27 32 0 AAGGAAATAA 0.824304 -95 TTAAGATTACAAAAAAGGTAAAAAAACCAAATCTC 28 130 1 AAAGAAAAAA 0.842949 -171 CCATTCTTGAAAGAAGGGGAAGAAAGCC 33 157 1 AAAGAAGAAA 0.747509 -18 TTCTCATCCAAAAGTCTGAAAGAAAATCATCCTAC 40 56 1 AAGGAAGAAA 0.903946 -93 TGGCTGAGATAAAGCGCGGAAGAAACGCGCTTTGA 41 152 0 AAGGAAGAAA 0.903946 -149 TGTTACAGCGAAAAGGAGTAAAAAAAGCTGTCAAT 42 146 0 AAAGAAAAAA 0.842949 -155 AAAAGTCTGGAAGAAAGAGCCAAGAT 47 2 1 AAGGAAGAAA 0.903946 -62 TTGCGCTAAAAAAGCTTGTAAAAAAATTTACAAGC 48 14 0 AAGGAAAAAA 0.944633 -148 GAATGAGGGAAAAAAGCCCGCTAAAC 65 2 1 AAGGAAAAAG 0.740985 -154 AGCTGCGAGTAAAATTTGAAAATAACGGGTATAAT 71 138 0 AAAGAAATAA 0.596115 -89 CAAATCAACCAAAGCCAGAAAAAAGGAACATGATA 73 168 1 AAGGAAAAAG 0.740985 -133 CTTTAAATTGAATGTTAGGAAAAATCATTTTATTT 77 79 1 AAGGAAAAAT 0.511915 -85 CAAAAACCCGCAAATAAAGGCGTTTTT 78 3 1 AAAGAAATAA 0.596115 -298 CGGGGAAATCACAGAATGGAAAAAAAAAATTATAG 78 39 1 ACGGAAAAAA 0.806466 -262 GATCGTATAGAAAGTAGGGAAGTAA 81 286 1 AAGGAAGTAA 0.721281 -15 TTTTCACCGAAAAGTATGCAAAAAAGTCCTGCGTG 88 175 0 AAGGAAAAAA 0.944633 -126 GAAGGATGAAACCGAATGAAAAAAATGCTTGGCAA 91 96 1 ACGGAAAAAA 0.806466 -154 TATTGTAATAAATAGATGTAAAAAATAGGCAACGG 94 139 1 AAAGAAAAAA 0.842949 -38 AAATTAAATGAAGGAAAGCAAAAAAAAGTAAACTA 97 262 0 AAGGAAAAAA 0.944633 -39 AAGCATAGCGAAAATAGGAAAGAAAAACGTCAACC 106 31 0 AAAGAAGAAA 0.747509 -47 ** * * ****** Masking position 10 Map Score: 22.7784 Number of sites scoring better than the average of aligned sites = 175 Number in coding regions = 143 Number in noncoding regions = 32 Number of orfs with sites within 600 bp upstream = 38 Fraction of orfs with sites within 600 bp upstream = 0.00610344 Motif number 6 CCTCAAATGGTTTGGTTGTTTCGAGTGTCTT 18 79 0 TTTGGTTTTT 0.927688 -82 ACATTGGCCTTTTGGTTTTTTCCTTGCT 25 8 0 TTTGGTTTTT 0.927688 -183 ATGTCGGCCTTTTGGTTTTTTTGCGGTCTTT 25 35 1 TTTGGTTTTT 0.927688 -156 GTCTGAGAGATTTGGTTTTTTTACCTTTTTT 28 140 0 TTTGGTTTTT 0.927688 -161 AGCGGTTTGTTGTGGTTTTTTTATTCTCTTC 37 114 1 TGTGGTTTTT 0.788305 -65 AAAAAAATGATTTCGTTGTTTACAAAATGAT 41 251 0 TTTCGTTTTT 0.770495 -50 CTCACGTCCTTGTGGTGGTTTGTACAAGTTT 54 97 0 TGTGGTGTTT 0.631491 -26 AGGGCGGCCCTTTGGTTTTTTTACACGTTAC 64 35 1 TTTGGTTTTT 0.927688 -229 TTTTTCTGGCTTTGGTTGATTTGCAGCCAGG 73 160 0 TTTGGTTATT 0.540106 -141 GTTACGTTTGTTTCGTTTTTTATGTTTCATA 81 139 0 TTTCGTTTTT 0.770495 -162 ACAGCAGGTTTTTCGTTTTTTAACAATCATA 87 73 0 TTTCGTTTTT 0.770495 -112 CATATTCTATTTTGGTGCTTTGCTTTTCTCC 89 90 0 TTTGGTGTTT 0.855151 -188 CTGCCGGTATTCTGGTTTTTTTCGCCGTCGT 91 142 1 TCTGGTTTTT 0.669249 -108 CAGGTTACTTTTTGGTCATTTCTTGGTTATA 112 113 0 TTTGGTCTTT 0.687727 -188 CATTTATTTTTTTGGTGTTTTTGAAAGCGTT 112 185 1 TTTGGTGTTT 0.855151 -116 ******* *** Masking position 6 Map Score: 12.6629 Number of sites scoring better than the average of aligned sites = 69 Number in coding regions = 55 Number in noncoding regions = 14 Number of orfs with sites within 600 bp upstream = 18 Fraction of orfs with sites within 600 bp upstream = 0.0028911 Motif number 7 CTTCCTATAAGCAGGAAGGTTTTTTAATGA 7 63 1 GCAGGAAGGT 0.854824 -183 TCATAGAGAAGGAGGGAAGCCG 17 150 1 GGAGGGAAGC 0.953604 -12 GTTAGAAATAGAAGGAATGCCGCGATGTGG 18 47 0 GAAGGAATGC 0.816147 -114 GTTTTCCAAAGCAGGAAGGTG 23 104 1 GCAGGAAGGT 0.854824 -11 CTCCCGAAAAGGAGGGCAGTCT 30 3 0 GGAGGGCAGT 0.678363 -103 TATTGCTGAAGGAGGGATGCATTGGCTTAT 33 107 1 GGAGGGATGC 0.923771 -68 CGTGACTTTAGGAGGAATGTGCT 37 166 1 GGAGGAATGT 0.787787 -13 GAAAGTAACAGAAGGAAAGCAGGGGGAAAA 50 60 1 GAAGGAAAGC 0.882753 -21 TAGTTATGGTGCAGGAATGCTTAGGAGAGG 63 107 1 GCAGGAATGC 0.851077 -31 GAAACCAAGGGGAGGGCGGCCCTTTGGTTT 64 23 1 GGAGGGCGGC 0.868893 -241 CCTTAGGTTTGGAGGGAAGTGAG 80 17 1 GGAGGGAAGT 0.900367 -13 CGTATAGAAAGTAGGGAAGTAA 81 289 1 GTAGGGAAGT 0.673944 -12 TGCAGAAAAAGAAGGGAGGTATTTTCCTAT 97 154 0 GAAGGGAGGT 0.867802 -147 TAAATTAAATGAAGGAAAGCAAAAAAAAGT 97 268 0 GAAGGAAAGC 0.882753 -33 ATTTAATTTAGTAGGGAGGCGGT 97 288 1 GTAGGGAGGC 0.866577 -13 TGATTCCTCTGAAGGAAAGCCTGAAGCTAC 103 144 0 GAAGGAAAGC 0.882753 -157 AGGGAGTTCGGCAGGAAGGCTGTCGCCATA 108 34 0 GCAGGAAGGC 0.930517 -52 ********** Masking position 3 Map Score: 12.3114 Number of sites scoring better than the average of aligned sites = 211 Number in coding regions = 175 Number in noncoding regions = 36 Number of orfs with sites within 600 bp upstream = 41 Fraction of orfs with sites within 600 bp upstream = 0.00658529 Motif number 8 GGATTTTGTATATTATCCTAAAAATTACATTAATTAGTAT 1 180 0 TTTTTAAAAT 0.751537 -121 AACGGTTGAATATTATGATGAAACGGTCCTTCCTATAAGC 7 35 1 TTTTTGAAAT 0.712612 -211 AGCAGGAAGGTTTTTTAATGAAATAATTTTTTATTAGTAG 7 72 1 TTTTTGAAAT 0.712612 -174 CCAGAGGCGGTCTTATCAATAAAAATACCTATACGGAGGA 13 17 0 TTTTATAAAT 0.521399 -196 AAGGGTTCTTTTTTATGAAAAAAACAAATTGACAGGATGA 17 48 1 TTTTAAAAAT 0.870947 -114 CCGAAGGTCTTCTTATTGAAAAAGCTAAGTCGTGTTTTAG 21 33 1 TTTTAAAAAT 0.870947 -94 TTGGATGTTTTATATAAATGATTATAAATAATTCG 28 6 1 TTTTATAAAT 0.521399 -295 ATGCGGTTTTTATTTTCCAGAAACTCCTGTCAAAAATGCC 34 46 1 TTTTAGAAAT 0.846919 -78 GTATACAATTTTTTATTTTAACATCATAATAGATGATAAG 41 210 1 TTTTTAACAT 0.638307 -91 TTTAATGTGTTTTTATATTGACAGCTTTTTTTACTCCTTT 42 130 1 TTTTTGACAT 0.591291 -171 GTGCCCTTTCTTTTATTCAAAAATTGACGTTCACCATAAG 43 39 1 TTTTAAAAAT 0.870947 -125 AGTTCCTTGATTTTTTACAAAAACATTTCTTTACCGACGC 44 91 0 TTTTAAAAAT 0.870947 -193 CATTTTTCGGTTTTATGGAAAAAATATCTTGTAATTCTTA 44 148 1 TTTTAAAAAT 0.870947 -136 AAGTGTGAGCTTTTTTATTGACATTTCATTTTTTGGGCAC 71 179 1 TTTTTGACAT 0.591291 -48 GAAAAACAATTGTTTTTCTAACAAAGCCTTCTCTGTTATA 73 210 1 TTTTTAACAT 0.638307 -91 GAGGTTAGCCTCTTGTTCAGACATCAAAATTGGGTTACAC 77 40 1 TTTTAGACAT 0.763477 -124 ATTTTATTTTTCTTATATAGAAAATAAAATGATTTTTCCT 77 95 0 TTTTAGAAAT 0.846919 -69 CCTTTAAGAGTGTTGTAAAAACATGAGGCTTACTTAAAAA 78 242 0 TTTTAAACAT 0.797471 -59 CGTTTTTTTGTAAAAAAAGGATTGACTTTGTGA 81 4 1 TTTTAAAAAT 0.870947 -297 ACGACTCCGGTCTTATATAAAAATCAATCTCTGATTCGTT 93 75 1 TTTTAAAAAT 0.870947 -87 AATTTTGGAATCTTCTAGAAAAATCATCGTGATGTACATA 100 257 1 TTTTAAAAAT 0.870947 -44 AGAATGCGTATATTCTAGAAAAAAACATTTTTATATACTA 102 107 0 TTTTAAAAAT 0.870947 -110 GCTGGTCAACTTTTTTTAAAAAAGATAACTTTATTGAAAC 113 83 0 TTTTAAAAAT 0.870947 -218 * ** * ***** * Masking position 6 Map Score: 13.4657 Number of sites scoring better than the average of aligned sites = 185 Number in coding regions = 106 Number in noncoding regions = 79 Number of orfs with sites within 600 bp upstream = 81 Fraction of orfs with sites within 600 bp upstream = 0.01301 Motif number 9 GTCACAATCTCCCTTATCTTTATTTCTAGTAAT 12 11 1 CCTTATCTTT 0.626671 -133 TTATCCACTTCCTTTACCTGTTTCACCGAATAG 15 275 0 CCTTACCTTT 0.719986 -26 GACCATTTCCCTTCTTTTGTTCGCT 16 3 1 CCTTTCCCTT 0.807364 -133 CAAAAACAGACCATTTTCTCTGTATGTAAAAGG 22 39 0 CCTTTTCTTT 0.934883 -86 CTATGTACCCCCATTTTCTATTTTGTGAGATTT 25 165 0 CCTTTTCTTT 0.934883 -26 TTTCCGATCCCCTTTTCCATTCTACTCCTTAAC 26 78 0 CCTTTCCATT 0.810459 -49 ACGCGGTCTGCCTTTTTTTATTTTCACTCCTTC 27 25 1 CCTTTTTTTT 0.402374 -102 TCAGATCCCCCCATTTTCTTTCTATTATATACA 29 41 0 CCTTTTCTTT 0.934883 -24 CTCCCGATACCCAATTCCCTTCTTATCATACCT 34 93 0 CCATTCCCTT 0.365858 -31 TCGCCATTTCCTATATCATACAGAAA 35 4 1 CCTTTCCTTT 0.956506 -297 TGAAGCCTAGCCGTTTTCTGTATGATATAGGAA 35 18 0 CCTTTTCTTT 0.934883 -283 TGTTGTGGTCTCTTTTTCTATTTACCGTGACAA 38 103 1 TCTTTTCTTT 0.4105 -38 AAATGATCCGGCTTTTTCTTTTTCTCATCCAAA 40 35 1 GCTTTTCTTT 0.67329 -114 AGATTGTGTGCCCTTTCTTTTATTCAAAAATTG 43 32 1 CCTTTCTTTT 0.507711 -132 GGTTAGTTTTCTTTTTCCTCTCTTAAAAACGAT 46 32 1 CTTTTCCTTT 0.484033 -139 TTTGGCCTGCCCTTTTTATCTTTATTCCCGCGT 51 110 0 CCTTTTATTT 0.402374 -26 TGCCCCCTTCCCCCTATTGCAGATCCA 52 115 0 CCTTCCCCTT 0.435199 -17 ACGCGCTTTTCCTTTTCATTTTTCATATAAACT 61 131 0 CCTTTCATTT 0.507711 -116 TGTATAATCCTTTTCCAGTATGATAAAATGT 70 9 1 CCTTTCCATT 0.810459 -78 GGATTGCTAACCATTTCCTTTCACTCTATTGTA 71 35 1 CCTTTCCTTA 0.456423 -192 CCTGTTCTTTCCGTTTTCATTCTAGCATGTTTT 74 136 0 CCTTTTCATT 0.73625 -31 ATTAAGCAAGCCTTTCTCTCTTTTTA 75 4 0 CCTTCTCTTT 0.725236 -208 CTTAATACAGCCTTTCTCTTTTTACTATAAATG 75 31 1 CCTTCTCTTT 0.725236 -181 TCCCCGACATCCTATTTCTCTATTTTATGTCAT 75 167 0 CCATTTCTTT 0.664013 -45 TAAAATGTAAGCATTTTCTTTTTGGGGGAGAGA 78 193 1 GCTTTTCTTT 0.67329 -108 ACTCACCGCACTTTTTCCTTTTTTATCAAGTGT 79 71 0 CTTTTCCTTT 0.484033 -26 CTTCCCCCCTCCCATTCCATTTTACTAAATGGG 87 115 0 CCATTCCATT 0.370516 -70 CAATTCGCAAGCTTTTCCTTTATAATAGAATGA 91 59 1 GCTTTCCTTT 0.759425 -191 TCAGAGCCCCCCGTTGCCTATTTTTTACATCTA 94 151 0 CCTTGCCTTT 0.601314 -26 TTTCTATCTCCCATGTCCTCTTTCTTTTAAACT 99 109 0 CCTGTCCTTT 0.554464 -175 CCTTTTCGTATTTATAAGGAATT 100 1 1 CCTTTCGTTT 0.464336 -300 TAGTGTATCCCCAATTTCTATGTATTTCCCGGT 100 69 1 CCATTTCTTT 0.664013 -232 GAAAATTTTACCTTTATCATTCTATCATAACAA 100 184 1 CCTTATCATT 0.246067 -117 AGTAAATCGGTCTTTTTCTTTTTGTTATGATAG 100 205 0 TCTTTTCTTT 0.4105 -96 CATTTTCTGAGCATTTTCTCTTTTGTTGTATAC 104 43 0 GCTTTTCTTT 0.67329 -123 ** ****** * * Masking position 11 Map Score: 21.3116 Number of sites scoring better than the average of aligned sites = 778 Number in coding regions = 633 Number in noncoding regions = 145 Number of orfs with sites within 600 bp upstream = 156 Fraction of orfs with sites within 600 bp upstream = 0.0250562 Motif number 10 AGAAATTGTTTTTTCATCCTGTCAATTTGTTTTT 17 67 0 TTTTCATTCA 0.92611 -95 TGATCCGGCTTTTTCTTTTTCTCATCCAAAAGTC 40 38 1 TTTTCTTTCA 0.800951 -111 GCGGGAAACTTTTTCAAAGTTTCATTCGTCTACG 44 194 1 TTTTCATTCA 0.92611 -90 TCTTACCTCATTTTCAGCTTTTCATCTTACTTGT 49 94 0 TTTTCATTCA 0.92611 -26 CCTTCTGTTACTTTCATTTTATCAAATCGTGAGA 50 41 0 CTTTCATTCA 0.892597 -40 GGTAAAAACGCTTTCTAAATTTCACATAACCTTC 52 37 1 CTTTCTTTCA 0.727382 -95 TATGGCAATTTTTTCAGCCTGTCAATCTAGAGGT 71 84 0 TTTTCATTCA 0.92611 -143 GTTCTTTCCGTTTTCATTCTAGCATGTTTTCGTT 74 132 0 TTTTCATGCA 0.646434 -35 GATTAAGAATCTTTCTCAATTTCAGCACATATAA 88 62 1 CTTTCTTTCA 0.727382 -239 CGGCAGGCAATTTTCATAATTTCACATATTCTTT 89 208 0 TTTTCATTCA 0.92611 -70 CTTTTTTTGTTTTTCACTCTGTCAATTTCCCATT 94 51 1 TTTTCATTCA 0.92611 -126 AATATCTCATTTTTCCATTTTTCAGTCAATAATT 94 109 0 TTTTCCTTCA 0.70241 -68 GACGTCAATTCTTTCAGCATGTCAGCCCAACTAT 100 102 0 CTTTCATTCA 0.892597 -199 AATTTTACCTTTATCATTCTATCATAACAAAAAG 100 187 1 TTATCATTCA 0.552289 -114 ****** * *** Masking position 14 Map Score: 10.3189 Number of sites scoring better than the average of aligned sites = 151 Number in coding regions = 124 Number in noncoding regions = 27 Number of orfs with sites within 600 bp upstream = 28 Fraction of orfs with sites within 600 bp upstream = 0.00449727 Motif number 11 CTTCAGTCAAAAAGGCGTTTTGTAAGTCAA 4 30 1 AAAGGCGTTT 0.932403 -35 CGTTACCAAGAGAGGAGTATCGAAACATAG 10 112 1 AGAGGAGTAT 0.803421 -189 AATCGAGTAAAAAGGGGTTTGGAGGCTTTT 30 84 1 AAAGGGGTTT 0.765794 -22 CAACTTGTTAGGAGGCGTTTAC 32 82 1 GGAGGCGTTT 0.776907 -12 GGCATTTTTGACAGGAGTTTCTGGAAAATA 34 56 0 ACAGGAGTTT 0.744818 -68 GTATTAGAAGAGAGGCGTATTGTAAACAAC 46 105 0 AGAGGCGTAT 0.806375 -66 CTGTTTTTTGAAAGGAGTTTGATC 46 157 1 AAAGGAGTTT 0.933291 -14 TCAAAACACAAGAGGTGTTTGCTCGGAGCG 56 135 0 AGAGGTGTTT 0.667422 -146 ATCCTGTTTTGAAGGAGTTTGTACAGAATA 56 166 0 GAAGGAGTTT 0.7898 -115 AATGCTTAGGAGAGGAGTTTTTAGAC 63 122 1 AGAGGAGTTT 0.927167 -16 GATAAATGGGAAAGGAGTATTGAT 72 5 0 AAAGGAGTAT 0.817965 -263 ACCCGCAAATAAAGGCGTTTTTTCGGGGAA 78 16 1 AAAGGCGTTT 0.932403 -285 ATGAAGACGTAAAGGCGTTTACAGCTATAT 83 11 0 AAAGGCGTTT 0.932403 -115 TCTTTCAAAAAAAGGAGTGTGGAAACG 88 284 1 AAAGGAGTGT 0.829076 -17 AATAACCGTTAAAGGAGTGTAAGAAC 89 7 0 AAAGGAGTGT 0.829076 -271 ********** Masking position 3 Map Score: 8.25584 Number of sites scoring better than the average of aligned sites = 84 Number in coding regions = 60 Number in noncoding regions = 24 Number of orfs with sites within 600 bp upstream = 27 Fraction of orfs with sites within 600 bp upstream = 0.00433665 Motif number 12 TTTTATATAATAGCACCATTTTAAACAGAAGG 13 165 0 TCACCATTTT 0.899557 -48 AATCGATTGATCTCACAATTTTATCATTA 15 8 0 TCACAATTTT 0.579785 -293 TCATCATCACCTCATTTTTATTTCTAGA 20 61 0 TCCTCATTTT 0.857917 -18 CCACTATGTACCCCCATTTTCTATTTTGTG 25 171 0 TCCCCATTTT 0.960593 -20 ATGAAATTCCCCCATTTTCGAATCTGTA 29 7 1 TCCCCATTTT 0.960593 -58 ATCAGATCCCCCCATTTTCTTTCTATTA 29 47 0 TCCCCATTTT 0.960593 -18 GATCTTACCTCATTTTCAGCTTTTCA 49 104 0 TCCTCATTTT 0.857917 -16 CATCTCACCATTTTCAAGTATCAC 56 267 0 TCACCATTTT 0.899557 -14 AATTCGCCTTTTACATCATTTTTAAAAGAAAT 75 87 0 TCATCATTTT 0.689288 -125 ATTTAAAGTGTAACCCAATTTTGATGTCTGAA 77 55 0 TCCCAATTTT 0.789712 -109 TCAGTTAGTGTATCCCCAATTTCTATGTATTT 100 64 1 TCCCCAATTT 0.755935 -237 * ********* Masking position 8 Map Score: 5.92823 Number of sites scoring better than the average of aligned sites = 59 Number in coding regions = 49 Number in noncoding regions = 10 Number of orfs with sites within 600 bp upstream = 13 Fraction of orfs with sites within 600 bp upstream = 0.00208802 Motif number 13 TCGGGAGAAAACCTGCAAATTGCTTTTGACCCAGA 9 125 0 ACCTGCATTT 0.754652 -176 GAATAAAGACACATGCCAAATGACTCATTTTTCCA 16 91 0 ACATGCCATT 0.685617 -45 TAATCATGCCTCCTGCCTCATACCTATTAAGGTCA 21 76 1 TCCTGCCATT 0.858675 -51 GGCAGACCGCGTCTGCCTTTTTCTTT 27 2 0 GTCTGCCTTT 0.564593 -125 CGATTCGGATACATGCCGAATTATTTATAATCATT 28 27 0 ACATGCCATT 0.685617 -274 CAAAGTGTAAGCATGCACTTTGGCTGTTGTGGTCT 38 79 1 GCATGCATTT 0.348296 -62 ATGACCACCTGCCGCTTGTGTTTCTCTACTT 45 169 0 ACCTGCCTTT 0.955584 -21 CGGTTTGGCCTGCCCTTTTTATCTTTATTCCC 51 114 0 GCCTGCCTTT 0.963164 -22 TCCTAAGCATTCCTGCACCATAACTAAAGAAAACC 63 98 0 TCCTGCAATT 0.464857 -40 CACTCTCCCAACCTCCCATTTTTTTATATGATATG 68 118 0 ACCTCCCTTT 0.612605 -27 ATTATCAACCTGCCTATTTCTTTAGGATTGCT 71 8 1 ACCTGCCTTT 0.955584 -219 TATGAAAATTGCCTGCCGTATGTTAAAACTAGTTT 89 224 1 GCCTGCCATA 0.736646 -54 GAGCCAGGATACCTGCCTGTTTGATCAGCACGAAT 96 172 1 ACCTGCCTTT 0.955584 -129 TCATCACGACACCTGCCTATTATGAAAATTTTACC 100 161 1 ACCTGCCTTA 0.76449 -140 AAACGAAAGCGCCAGCCGGTTATGTGCTGAACACT 103 197 0 GCCAGCCTTT 0.67743 -104 CTGCTCAAGCGCCTGCCCGATCCCTAATACGTTTC 109 167 0 GCCTGCCATT 0.94882 -37 TTGATTTTCCTCCTGCCGAATGACTTCATTTCATC 113 272 0 TCCTGCCATT 0.858675 -29 ******* ** * Masking position 11 Map Score: 6.1874 Number of sites scoring better than the average of aligned sites = 217 Number in coding regions = 180 Number in noncoding regions = 37 Number of orfs with sites within 600 bp upstream = 38 Fraction of orfs with sites within 600 bp upstream = 0.00610344 Motif number 14 TATCATTTCTTTTTTATGGCTTCA 4 3 1 TTTTCTTTTT 0.784624 -62 TGTGTGTGCAAGCTTACTTTTTGATTGGGAGG 22 98 1 ATTACTTTTT 0.659745 -27 AGATTTGGTTTTTTTACCTTTTTTGTAATCTT 28 132 0 TTTACCTTTT 0.524957 -169 TATAGTACTTTTATTTCATTTTCGTAAAATGT 31 50 1 TTTTCATTTT 0.784624 -105 TCAAGTAATTTTGTTACATTTTACGAAAATGA 31 65 0 TTTACATTTT 0.742222 -90 CTGCAGCCCGTTATTTCTTTTTACGTGCCGAA 39 26 1 TTTTCTTTTT 0.784624 -106 TTCACAGGTTAGTTTTCTTTTTCCTCTCTTAA 46 26 1 ATTTCTTTTT 0.710421 -145 TTCCTTCTGTTACTTTCATTTTATCAAATCGT 50 45 0 TTTTCATTTT 0.784624 -36 CATTTCACATTTCTTACTTTTTGAAGGTTATG 52 61 0 TTTACTTTTT 0.742222 -71 CTCAAGTATTATCTTACTTTTTTCAACCTTAA 53 61 0 ATTACTTTTT 0.659745 -31 CCGGGCGTTCTTTTTTCCTTTTATCCCTTCTA 56 46 0 TTTTCCTTTT 0.58302 -235 CTTGTTTGTCAAATTTCATTTTTAGTCGAAAA 57 114 1 ATTTCATTTT 0.710421 -162 TCATATAAACTGCTTACATTTTACCATACCCT 61 110 0 TTTACATTTT 0.742222 -137 TTCAAATGTCATGTTTCATTTTTTTTCACGTC 62 13 0 ATTTCATTTT 0.710421 -73 CCTATGTATGAAATTTCTTTTTTTATAGGTTA 65 123 0 ATTTCTTTTT 0.710421 -33 TTTTTTATTGACATTTCATTTTTTGGGCACAC 71 189 1 ATTTCATTTT 0.710421 -38 CATTCTAGCATGTTTTCGTTTTGCGGCTGACT 74 120 0 TTTTCGTTTT 0.768171 -47 AAAAAGAAAATGCTTACATTTTACTGGCTGCT 78 184 0 TTTACATTTT 0.742222 -117 CACGTTACGTTTGTTTCGTTTTTTATGTTTCA 81 141 0 TTTTCGTTTT 0.768171 -160 ATAAAACTTCCTTACGTTTTATGATTCCTG 85 101 0 TTTACGTTTT 0.723671 -20 TTTCACATATTCTTTTCATTTTTATCCCACAA 89 191 0 TTTTCATTTT 0.784624 -87 GCAGATCCTCCTTTCGTTTTCCTTGTCTTC 93 142 0 TTTTCGTTTT 0.768171 -20 ACTTTGCAGCAGTTTACGTTTTATCGGTTTTC 97 202 0 ATTACGTTTT 0.638152 -99 GGAAAGTAGTAGTTTACTTTTTTTTGCTTTCC 97 253 1 ATTACTTTTT 0.659745 -48 CATGCACAACAGGTTACTTTTTGGTCATTTCT 112 121 0 ATTACTTTTT 0.659745 -180 * ********* Masking position 5 Map Score: 17.6823 Number of sites scoring better than the average of aligned sites = 570 Number in coding regions = 446 Number in noncoding regions = 124 Number of orfs with sites within 600 bp upstream = 137 Fraction of orfs with sites within 600 bp upstream = 0.0220045 Motif number 15 AGCAAGGAAAAAACCAAAAGGC 25 2 1 GCAAGAAAAA 0.896722 -189 ACGAAGGAGTGAAAATAAAAAAAGGCAGACC 27 29 0 GAAAAAAAAA 0.670759 -98 GGAGTTTCTGGAAAATAAAAACCGCATATGA 34 42 0 GAAAAAAAAA 0.670759 -82 CCCCCTTTCGGCACGTAAAAAGAAATAACGG 39 33 0 GCACGAAAAA 0.939999 -99 TCGATTAAGCGCACAAAAAAATACACCATTC 41 69 1 GCACAAAAAA 0.932289 -232 TCAAAAATTGGCACGCAAAAAAGGCGGAGAT 45 40 0 GCACGAAAAA 0.939999 -150 ATTTCTGGAAGCAAACATAAAAAAACTCTCC 54 32 0 GCAAAATAAA 0.638344 -91 GAATGGATGTGCACGAAAAAAATAAGCTGCG 58 24 0 GCACGAAAAA 0.939999 -151 CGTGAGGGGAGCAAAAATAAA 66 12 1 GCAAAATAAA 0.638344 -11 CTGTTTTTGGGCACAAAAAAAGCCTGCTCCC 68 39 0 GCACAAAAAA 0.932289 -106 GCAAGGAAAAAGCCTAAAACT 76 1 1 GCAAGAAAAA 0.896722 -43 TCACAGAATGGAAAAAAAAAATTATAGGTAA 78 47 1 GAAAAAAAAA 0.670759 -254 TGTATCGGTAGAACGAAAAAAAAGACTTGTT 87 23 0 GAACGAAAAA 0.807049 -162 CTCAATTTCAGCACATATAAACGCTCTTTCG 88 76 1 GCACAATAAA 0.76104 -225 GGACCCATTGGCACAAAAAAACGCCATGCAC 93 34 0 GCACAAAAAA 0.932289 -128 TTAAATGAAGGAAAGCAAAAAAAAGTAAACT 97 263 0 GAAAGAAAAA 0.698622 -38 ACGCAACACCGCACAAAAAAACACGCCATCT 107 29 0 GCACAAAAAA 0.932289 -80 ***** ***** Masking position 7 Map Score: 15.7078 Number of sites scoring better than the average of aligned sites = 202 Number in coding regions = 131 Number in noncoding regions = 71 Number of orfs with sites within 600 bp upstream = 75 Fraction of orfs with sites within 600 bp upstream = 0.0120463