AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00051_ctra_reg_300.orf -o00051_ctra_300.ace -a/home/amcguire/genomes/ORF_ctra.txt -z/home/amcguire/genomes/ctra.fna -g0.41 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.41 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 kdsB 300 CMP-2-keto-3-deoxyoctulosonic acid synthetase #2 CT196 223 hypothetical protein #3 gcp_1 75 O-Sialoglycoprotein Endopeptidase #4 oppB_1 158 Oligopeptide Permease #5 oppC_1 31 Oligopeptide Permease #6 CT203 213 hypothetical protein #7 ybhI 29 Dicarboxylate Translocator #8 dut 36 dUTP Nucleotidohydrolase #9 accD 71 AcCoA Carboxylase/Transferase Beta #10 sodM 131 Superoxide Dismutase (Mn) #11 yhxB 151 Phosphomannomutase #12 CT296 108 hypothetical protein #13 tpiS 196 Triosephosphate Isomerase #14 lpxC 100 UDP-3-O-Acyl GlcNAc Deacetylase #15 cutE 63 Apolipoprotein N-Acetyltransferase #16 yciA 135 Acyl-CoA Thioester Hydrolase #17 CT538 300 hypothetical protein #18 kdsA 300 KDO Synthetase #19 murF 300 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminoligase #20 mraY 145 Muramoyl-Pentapeptide Transferase #21 mrsA 245 Phosphoglucomutase Motif number 1 TCTTGATTGTTAACGATCTCCTTGTTAGGATGG 1 174 1 TAAGATCCTT 0.851603 -127 CAATCTCATGATACGATCCTCTCCTTCCAAAAT 3 27 1 ATAGATTCTC 0.80138 -49 TCTCCTTCCAAAATGTTTCCCTCTTTTTTAAGT 3 46 1 AAAGTTCCTC 0.639251 -30 CCGTGCGTAGAAAAGATTCTCTCTTTAAAATGC 4 25 1 AAAGATTCTC 0.949122 -134 AAGATCATAGGAGGCTCTTCAAAAAGAGG 8 7 1 ATAGAGTCTT 0.843086 -30 AGGCTCTTCAAAAAGAGGGCCTTCT 8 22 1 AAAGAGCCTT 0.962629 -15 AAAACCATCCTCTTTACAAAAAAT 9 58 0 AAACATTCTT 0.741689 -14 AATCTCTTGGATATGCTAATCTTCTTGTCTTAC 13 59 0 ATAGCTTCTT 0.754408 -138 GATGAGAGAAAAAGAATCCCCTTAGAAGTTAC 15 10 0 AAAAATCCTT 0.667694 -54 GTAAGCTAGTAAGGGAGCCCCTTTA 15 49 1 AAGGAGCCTT 0.741329 -15 AGAAATGATTTTCTTGCTCGACATA 17 3 1 AAAGATTCTT 0.975039 -298 ATATGGGCGGAAAGGCTTCCCTTTAGAAGGAGG 17 219 1 AAAGCTCCTT 0.935423 -82 TCAGAGTTCTTAACGATCTTCTCAGCTGACAGA 18 239 0 TAAGATTCTC 0.725511 -62 CCACTCTAAAAAAGGATACCCTTTT 18 286 1 AAAGATCCTT 0.975816 -15 TATATGAGTGAAAAGCGTTTCTTTAGAGGTTGA 19 125 1 AAAGCGTCTT 0.900344 -176 CCATCTCCTAAAAAGATTCTCTTTTCTTTCCTC 19 198 0 AAAGATTCTT 0.974003 -103 AGGCAAGTTAAAAAGAGCATCTTACAGCGACTT 20 56 0 AAAGAGTCTT 0.961319 -90 GTTTTGAGCCAAAGGATATTCTTAGGGATAGAG 21 221 1 AAAGATTCTT 0.975035 -25 *** *** **** Masking position 12 Map Score: 20.3211 Number of sites scoring better than the average of aligned sites = 151 Number in coding regions = 151 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 2 ACCTCCCGCGTTTCATTCGTGAAAAATAATCAAATA 1 96 1 TTCTGAAAAA 0.77501 -205 AAATAATCAAATACATTATCCAATAAGTTAAGAAAG 1 119 1 ATCTTAATAA 0.788795 -182 TAGACTAGATTTTACTAATTAAAAAAACCGTTTTAT 2 75 1 TTATTAAAAA 0.909244 -149 ATGCTATTTCATTTCTTTTGCAAAAACTCTCTACTT 2 171 1 ATTTTAAAAA 0.780903 -53 TTTTATTATTGATTGGTTAAAAAAAATTACAATA 9 9 1 TTATTAAAAA 0.91106 -63 AAAACCATCCTCTTTACAAAAAATTGAGCAAT 9 50 0 ATCCTAAAAA 0.686593 -22 TCTCAAGATTTTGTATTCTTAAAAAATAGTT 12 6 0 TTTTTAAAAA 0.864403 -103 TTTAAGATTATTTCCGCCTATAAAAACCCGATTGAC 12 42 0 TTCGTAAAAA 0.878435 -67 GCAATAGAAAATAAATCATATAAAAATAAGCCTTCC 13 101 1 ATATTAAAAA 0.851146 -96 TTGATATCGCTTGCTTGCTAAAAAAAAAAAAGGATA 14 45 1 TTCTTAAAAA 0.966316 -56 CACAAGCTCATTACGTTTTTCAATAAGACTTTGAAT 17 52 0 TTCTTAATAA 0.870029 -249 TAGGCCTGTTTTGCTTTTTGTAAAAATACTTTTGCA 17 155 1 TTCTTAAAAA 0.9666 -146 GGATTCACTATTTCCTCTTTAAAAAACCTTCTTCCT 18 148 1 TTCTTAAAAA 0.966563 -153 TTTTTTCTTCATCCTGCTTACAAAAAAAAGATCCCA 19 71 0 ATCGTAAAAA 0.801259 -230 AGAAACGCTTTTCACTCATATAAAAAAGCTTCAGGA 19 111 0 TTATTAAAAA 0.911102 -190 AAAGTTAACTATTTCTATTCTAAAAAGAAATTCTGA 20 19 0 ATTTTAAAAA 0.78091 -127 CAAACGGCCATTCACTTTTTAAATAAGAAGTAAGAA 21 52 0 TTATTAATAA 0.703321 -194 ** * * * ***** Masking position 12 Map Score: 15.5823 Number of sites scoring better than the average of aligned sites = 124 Number in coding regions = 124 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 3 TATGATGTTATTTACTATTTTTC 1 4 0 TTTACTATTT 0.84394 -297 TATAAGAAGTTTTGCTTCTTAGGTGGGACG 1 264 1 TTTGCTTCTT 0.670436 -37 TTCTAAAAATTTTACTTTTACAAAGTTGAA 2 24 1 TTTACTTTTA 0.501728 -200 TAGACTAGATTTTACTAATTAAAAAAACCG 2 75 1 TTTACTAATT 0.524831 -149 ATAATGCTATTTCATTTCTTTTGCAAAAAC 2 168 1 TTCATTTCTT 0.427015 -56 GGATAGTAACCTTATTTTTTAGGATGGCT 10 113 1 CTTATTTTTT 0.670987 -19 ACTCACTTATTTAGGCGAATA 12 98 0 CTCACTTATT 0.667127 -11 ATCTTCTTGTCTTACTTTTTTCTGTGAATT 13 44 0 CTTACTTTTT 0.934489 -153 TTAGGCCTGTTTTGCTTTTTGTAAAAATAC 17 154 1 TTTGCTTTTT 0.770935 -147 ACTTATCCTTACTTTTTTCAGTTGCTT 17 284 0 CTTACTTTTT 0.934489 -17 TGGAAGCACTCTTCCTTCTTCTATTCCTTG 18 64 1 CTTCCTTCTT 0.698315 -237 ATTCCTTGGATTCACTATTTCCTCTTTAAA 18 141 1 TTCACTATTT 0.788134 -160 AACTAAATGATTTATTTTTTTTGTTTTT 21 9 0 TTTATTTTTT 0.641878 -237 TAATTATTTTCTTACTTCTTATTTAAAAAG 21 44 1 CTTACTTCTT 0.896075 -202 CAAACGGCCATTCACTTTTTAAATAAGAAG 21 58 0 TTCACTTTTT 0.896092 -188 GTATCAATAGCTTACTATTTATAACCAAAC 21 95 0 CTTACTATTT 0.860202 -151 GAGATAAATATTCCCTATTTTTATCAAAAT 21 171 0 TTCCCTATTT 0.499662 -75 ********** Masking position 6 Map Score: 9.46455 Number of sites scoring better than the average of aligned sites = 200 Number in coding regions = 200 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 4 TCTCCTTCCAAAATGTTTCCCTCTTTTTTAA 3 46 1 AAAGTTTCCC 0.876098 -30 CCGTGCGTAGAAAAGATTCTCTCTTTAAAAT 4 25 1 AAAGATTCTC 0.97095 -134 TAATTTAATAAAGGATTTCTAAAACAAACT 5 10 1 AAAGATTTCT 0.650127 -22 AGATGAGAGAAAAAGAATCCCCTTAGAAGTT 15 13 0 AAAGAATCCC 0.917554 -51 AGAAATGATTTTCTTGCTCGACA 17 3 1 AAAGATTTTC 0.946158 -298 ATATGGGCGGAAAGGCTTCCCTTTAGAAGGA 17 219 1 AAAGCTTCCC 0.950706 -82 CCACTCTAAAAAAGGATACCCTTTT 18 286 1 AAAGATACCC 0.946995 -15 ACCTCTAAAGAAACGCTTTTCACTCATATAA 19 124 0 AAAGCTTTTC 0.883126 -177 CCATCTCCTAAAAAGATTCTCTTTTCTTTCC 19 200 0 AAAGATTCTC 0.97095 -101 TTCTATTCTAAAAAGAAATTCTGATCTTTTA 20 12 0 AAAGAAATTC 0.634603 -134 GTTTTGAGCCAAAGGATATTCTTAGGGATAG 21 221 1 AAAGATATTC 0.874995 -25 *** ******* Masking position 3 Map Score: 7.8484 Number of sites scoring better than the average of aligned sites = 134 Number in coding regions = 134 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 5 AAACTTGGGACAAAAGAATGGCTTCAACTTT 2 45 0 CAAAAGAATG 0.571518 -179 AGTCGACTAATCAAGAAATATCAACCGCTGG 2 116 1 TCAAGAAATT 0.560477 -108 ATACAATATACAAAGGAATCTACT 4 145 1 CAAAGGAATT 0.87176 -14 ATTAGCATATCCAAGAGATTTATATCAAAGC 13 72 1 CCAAGAGATT 0.833422 -125 AGATTTATATCAAAGCAATAGAAAATAAATC 13 87 1 CAAAGCAATG 0.747555 -110 AGCCTTCCTTGCAAGAAATCGAGTATTACGC 13 129 1 GCAAGAAATG 0.873395 -68 TTTTTAGCAAGCAAGCGATATCAAAAAATTA 14 38 0 GCAAGCGATT 0.654114 -63 TCCTCCAAGGAATTTCTTGATTTTC 16 5 1 CCAAGGAATT 0.966439 -131 AAATACTTTTGCAAGGAAGTGAGAGTAGGTA 17 178 1 GCAAGGAAGG 0.765053 -123 AACAAGCATCTCAAGGAATAGAAGAAGGAAG 18 74 0 TCAAGGAATG 0.890225 -227 TGGGTTATGGGCAAGGATTCGGCGGATTAGC 18 111 0 GCAAGGATTG 0.687211 -190 AATAGTGAATCCAAGGAATGGGTTATGGGCA 18 129 0 CCAAGGAATG 0.981348 -172 TAAAAAATCTCAAAGAAATAGATTTTAGAAG 19 244 0 CAAAGAAATG 0.781273 -57 CGGCACGAAGCCAAGGGATCTGTT 19 287 1 CCAAGGGATT 0.945669 -14 TAGTTTTGAGCCAAAGGATATTCTTAGGGAT 21 219 1 CCAAAGGATT 0.651365 -27 ********* * Masking position 4 Map Score: 8.89177 Number of sites scoring better than the average of aligned sites = 236 Number in coding regions = 235 Number in noncoding regions = 1 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 6 ATCCAATAAGTTAAGAAAGCTAGTAGCTCTGTGA 1 136 1 TTAAGAGCAT 0.979397 -165 GAGATGCTTGTTCAAACTGCTAATCCGCCGAATC 18 93 1 TTCAAAGCAT 0.965272 -208 AGAATAATTTTTAAGACTGCTAGTAGAGGAAAGA 19 173 1 TTAAGAGCAT 0.979397 -128 AACTTAAGCTTTCAAAAGGCAAGTTAAAAAGAGC 20 71 0 TTCAAAGCAT 0.965272 -75 AAGCTTAAGTTTAAGATAGAGAATTTCTTATAGG 20 94 1 TTAAGAGAAT 0.860454 -52 CAAACAAAAATTCAAACGGCCATTCACTTTTTAA 21 66 0 TTCAAAGCAT 0.965272 -180 AGGAAAGGTCTTAAGAAGGCGAATTGCAAAGATT 21 140 1 TTAAGAGCAT 0.979397 -106 ****** ** * * Masking position 6 Map Score: 4.44483 Number of sites scoring better than the average of aligned sites = 6 Number in coding regions = 6 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 7 CCTAACAAGGAGATCGTTAACAATCAAGATTATTCAC 1 166 0 AGATTAATCA 0.770061 -135 CTAATTAAAAAAACCGTTTTATTTCTAAGTCGACTAA 2 89 1 AAATTTTTCA 0.918376 -135 AAAGGTTTTAAAGTCCAAATTAATTTA 2 207 0 AAATTAATCA 0.941378 -17 GATTATCAATAAAATATTCACTGTCAAGAGCTATCCA 10 29 0 AAATTATTCA 0.950206 -103 TTAAGAATACAAAATCTTGAGAGTCAATCGGGTTTTT 12 20 1 AAATTAATCA 0.941379 -89 GCTTATTTTTATATGATTTATTTTCTATTGCTTTGAT 13 95 0 ATATTATTCA 0.728638 -102 AATTCAAATGAAAAACTTCTATGTCGAGCAAGAAAAT 17 18 0 AAATTTTTCA 0.918376 -283 AATCAAACGCAAATGGTGTATAGTCAAATTTCTGTCA 18 209 1 AAATGAATCA 0.751501 -92 ACCTCTAAAGAAACGCTTTTCACTCATATAAAAAAGC 19 118 0 AAATTTATCT 0.546082 -183 GCAGTCTTAAAAATTATTCTATATCCATTATCAATTC 19 156 0 AAATTTTTCA 0.918376 -145 TTTAGAATAGAAATAGTTAACTTTCAAGTCGCTGTAA 20 31 1 AAATTATTCA 0.950206 -115 *** ** * * ** * Masking position 3 Map Score: 4.2166 Number of sites scoring better than the average of aligned sites = 67 Number in coding regions = 67 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 8 CTAAGTCGACTAATCAAGAAATATCAACCG 2 113 1 TAATCAAGAA 0.712481 -111 ATGAGATTGTTAATCAAGCAAGGCG 3 6 0 TAATCAAGCA 0.829602 -70 TAATTTAATAAAGGATTTCTAAAAC 5 6 1 TAATAAAGGA 0.678889 -26 ATTTATGACAAAAAAAAGCATTAACAAAGA 6 33 0 AAAAAAAGCA 0.82629 -181 GGACTCTCAGAAAACGAGCAGGCCGTAGCA 6 169 0 AAAACGAGCA 0.914876 -45 TCTTTACAAAAAATTGAGCAATAATTTTAT 9 42 0 AAATTGAGCA 0.612491 -30 AGCCTGTAGAAAATAGAGAAGGTGGCGAGG 10 85 1 AAATAGAGAA 0.794874 -47 TCCTTGCAAGAAATCGAGTATTACGCTTTG 13 134 1 AAATCGAGTA 0.686485 -63 TTGCTAAAAAAAAAAAAGGATAATATACGG 14 59 1 AAAAAAAGGA 0.793397 -42 ATATAGAAGAAAATCAAGAAATTCCTTGGA 16 14 0 AAATCAAGAA 0.855653 -122 AATTCCACTCTAAAAAAGGATACCCTTTT 18 282 1 TAAAAAAGGA 0.616176 -19 AAGGCAAGTTAAAAAGAGCATCTTACAGCG 20 60 0 AAAAAGAGCA 0.85253 -86 TTCCCATAATAAAACGAGAAAACAG 20 131 1 AAAACGAGAA 0.845449 -15 TTATCTCTGAAAATCAAGGATCAGTTAGTT 21 194 1 AAATCAAGGA 0.903867 -52 ********** Masking position 7 Map Score: 7.24631 Number of sites scoring better than the average of aligned sites = 151 Number in coding regions = 151 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 9 TGCGATCTAATCACAGATAACAAGTTGAAA 4 115 0 TCACAGATAA 0.854725 -44 AAGGAAGGACTCTCAGAAAACGAGCAGGCC 6 175 0 TCTCAGAAAA 0.946225 -39 ACCATCCTCTTTACAAAAAATTGAGCAATA 9 49 0 TTACAAAAAA 0.745884 -23 TTAAGCAAATTCACAGAAAAAAGTAAGACA 13 37 1 TCACAGAAAA 0.970441 -160 GGAAGAGTGCTTCCAGAAAATCGAAGTCTA 18 49 0 TTCCAGAAAA 0.914083 -252 AAAAAAAAGATCCCAGAAAATGCACACTGT 19 56 0 TCCCAGAAAA 0.964562 -245 TTCATCCTGCTTACAAAAAAAAGATCCCAG 19 70 0 TTACAAAAAA 0.745884 -231 GGAATATTTATCTCTGAAAATCAAGGATCA 21 187 1 TCTCTGAAAA 0.759229 -59 ********** Masking position 7 Map Score: 3.66767 Number of sites scoring better than the average of aligned sites = 93 Number in coding regions = 93 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 10 AGAAGGCTTGTAAATATCTAGAAGTGTATGAT 1 35 0 TAATTCTAGA 0.815127 -266 AGGAGATCGTTAACAATCAAGATTATTCACAG 1 164 0 TACATCAAGA 0.967562 -137 TGATAATTTAACACTCTCTAGACAAGACCTCT 4 60 0 AACTTCTAGA 0.858989 -99 AATAAAATATTCACTGTCAAGAGCTATCCACA 10 27 0 TACTTCAAGA 0.973509 -105 AATATTTTATTGATAATCTAGAGGGATCTATC 10 48 1 TATATCTAGA 0.669915 -84 AAAACCCGATTGACTCTCAAGATTTTGTATTC 12 24 0 TACTTCAAGA 0.973509 -85 CCTTACTAGCTTACATTCAAGATGAGAGAAAA 15 31 0 TACATCAAGA 0.967562 -33 TCGATATAGAAGAAAATCAAGAAATTCCTTGG 16 15 0 AAAATCAAGA 0.683135 -121 TAGAAATAGTTAACTTTCAAGTCGCTGTAAGA 20 38 1 TACTTCAAGT 0.852792 -108 * *** ****** Masking position 7 Map Score: 3.64971 Number of sites scoring better than the average of aligned sites = 32 Number in coding regions = 32 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 11 TATGAATATGTTTGGTAAGGGCCTACTGTATA 1 236 1 TTGGTAGGGC 0.867073 -65 CTCTTTAAAATGCGGAGAGGTCTTGTCTAGAG 4 45 1 TGGGAGGGTC 0.787756 -114 TAACTTAGAAAGTGGGATAGGCACAAAAATCC 11 17 0 AGGGGAAGGC 0.872062 -135 AACAGAAGCCTGACGTATAGTCCCGTTTTGTC 11 66 1 TGCGTAAGTC 0.747685 -86 GACTAGTCTCAGAGTTACAGGCCCACCTCTAC 16 78 0 AGGTTAAGGC 0.816054 -58 CCCATGCTCTAGGGGTAGGGGCATCCTGAATC 17 118 0 AGGGTAGGGC 0.979924 -183 GGTAGAGAACAGGGATATGGGCGGAAAGGCTT 17 205 1 AGGATAGGGC 0.827143 -96 ATCCAAGGAATGGGTTATGGGCAAGGATTCGG 18 120 0 TGGTTAGGGC 0.934688 -181 CAAACGCAAATGGTGTATAGTCAAATTTCTGT 18 212 1 TGTGTAAGTC 0.666596 -89 CGCGATGTTATGAGGAAAAGTCAATAACAGTG 19 30 1 TGGGAAAGTC 0.91199 -271 GATTGATGTTTGAGGAAAGGTCTTAAGAAGGC 21 128 1 TGGGAAGGTC 0.951711 -118 ** **** **** Masking position 12 Map Score: 2.10872 Number of sites scoring better than the average of aligned sites = 77 Number in coding regions = 77 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 12 TAGGATGGTCGGGTTCTGTGTACTAGATCC 1 199 1 GGGTTCTGTG 0.967538 -102 CATATGACTAGGGATCTAGTACACAGAACC 1 210 0 GGGATCTAGT 0.913698 -91 ATAATCTAGAGGGATCTATCTAGCTAGCCT 10 60 1 GGGATCTATC 0.82952 -72 CTATACGTCAGGCTTCTGTTTTTGTAAAAA 11 56 0 GGCTTCTGTT 0.803342 -96 GTAGAGAACAGGGATATGGGCGGAAAGGCT 17 206 1 GGGATATGGG 0.914672 -95 TCCAAGGAATGGGTTATGGGCAAGGATTCG 18 121 0 GGGTTATGGG 0.869827 -180 TGCATTTTCTGGGATCTTTTTTTTGTAAGC 19 62 1 GGGATCTTTT 0.859657 -239 ACGAAGCCAAGGGATCTGTT 19 291 1 GGGATCTGTT 0.975366 -10 ********** Masking position 5 Map Score: 1.35729 Number of sites scoring better than the average of aligned sites = 67 Number in coding regions = 67 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 13 GCTTGTAAATATCTAGAAGTGTATGATTTATGA 1 29 0 ATAAAGTGTA 0.639419 -272 AAACCGTTTTATTTCTAAGTCGACTAATCAAGA 2 99 1 ATCAAGTCGA 0.956168 -125 ACGACCATGGAGCTCGGAGTCTAAGCAGACAAG 6 131 0 ATCGAGTCTA 0.956168 -83 GGCGGAAATAATCTTAAAGTCTATAGTACTTTC 12 60 1 ATTAAGTCTA 0.752657 -49 TTTGTAAGATAGATCAAAGCGTAATACTCGATT 13 145 0 ATCAAGCGTA 0.825854 -52 GTAACTTCTAAGGGGATTCTTTTTCT 15 4 1 ATCAAGGGGA 0.748124 -60 GTGGGCCTGTAACTCTGAGACTAGTCAAGATAG 16 84 1 ATCGAGACTA 0.774397 -52 CAAATGAAAAACTTCTATGTCGAGCAAGAAAAT 17 18 0 ATCATGTCGA 0.734874 -283 TTTTCATTTGAATTCAAAGTCTTATTGAAAAAC 17 41 1 ATCAAGTCTT 0.815683 -260 TGCTTCCAGAAAATCGAAGTCTAAGGTATAGTA 18 39 0 ATCAAGTCTA 0.97209 -262 CGGGAGATATCCGAGTGTACGCGATGTTA 19 7 1 ATCGAGTGTA 0.927074 -294 * ** ******* Masking position 1 Map Score: 1.05649 Number of sites scoring better than the average of aligned sites = 35 Number in coding regions = 35 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 14 ********** No masking Map Score: -5.39769e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 15 ********** No masking Map Score: -5.39769e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0