AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00300_ctra_reg_300.orf -o00300_ctra_300.ace -a/home/amcguire/genomes/ORF_ctra.txt -z/home/amcguire/genomes/ctra.fna -g0.41 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.41 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 htrB 131 Acyltransferase #2 ybbP 274 hypothetical protein #3 yaeT 300 Omp85 Analog #4 CT242 68 (OmpH-Like Outer Membrane Protein) #5 lpxD 27 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase #6 murE 300 UDP-N-acetylmuramoylalanylglutamyl DAP Ligase #7 dapB 176 Dihydrodipicolinate Reductase #8 CT365 169 hypothetical protein #9 glyA 300 Serine Hydroxymethyltransferase #10 cutE 63 Apolipoprotein N-Acetyltransferase #11 yciA 135 Acyl-CoA Thioester Hydrolase #12 CT538 300 hypothetical protein #13 murF 300 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminoligase #14 CT780 155 Thioredoxin Disulfide Isomerase #15 lysS 231 Lysyl tRNA Synthetase Motif number 1 GTTGCTTTTCGGGCTTTTTTTCGTTGTTTTC 3 61 1 GGCTTTTTTT 0.511138 -240 AGTTCTCTCTGTTCTCTTTTCTTCCTATATT 3 94 1 GTCTCTTTTC 0.826444 -207 GGTCTTGAGTAGTCTCTTCCTAATATGTGGG 3 171 1 AGCTCTTCCT 0.824743 -130 AGTAAGAATGGTGCTCTTCCCAGAAAGAGTA 3 229 1 GTCTCTTCCC 0.870008 -72 AGTTTTATTCTTACTCTTTCTGGGAAGAGCA 3 240 0 TTCTCTTTCT 0.982559 -61 TATTACTTCCTTTATCTAGAAAAGTCT 3 284 0 TTCTTTATCT 0.8349 -17 AAGGAGAAGGATGCTCTCCTTCTCCTTTCGG 4 14 0 ATCTCTCCTT 0.713982 -55 AATTATGAAATTGCTCTTTTCTTTATTATTA 6 78 0 TTCTCTTTTC 0.906839 -223 CATATAAGAGTTACTTTTTTTGTGAAAGAGT 6 139 1 TTCTTTTTTT 0.869123 -162 ACTCGTCTTTTTACTCTTTCACAAAAAAAGT 6 151 0 TTCTCTTTCA 0.759962 -150 TCTCTTGTCTTTGCTCTTTCTCTGACAGATG 6 182 1 TTCTCTTTCT 0.982559 -119 CACATCTAAAGTTCTTTCTCTAAATAAATTA 7 27 1 GTCTTTCTCT 0.824718 -150 ATTCGCAAACTTGCTCTTTTTCCTAATTTAT 7 50 0 TTCTCTTTTT 0.950841 -127 CGAATTTGCTTTGCTTTTCCTGTTGGAGCTA 7 76 1 TTCTTTTCCT 0.903229 -101 GGAAGCATCGTTTCTTTTTCTTATAGTTATA 9 137 1 TTCTTTTTCT 0.950841 -164 GTTAAAATAAATCCTCTTTCTCCTAGAAAGT 9 168 1 ATCTCTTTCT 0.968051 -133 GGCACTCTTTATCCTCTACCCACTCTCCCTT 9 239 0 ATCTCTACCC 0.657983 -62 TTCTAAGGGGATTCTTTTTCTCTCATCTTGA 10 16 1 ATCTTTTTCT 0.912303 -48 TGAGTCTAATAGCCTCTATCTTGACTAGTCT 11 101 0 AGCTCTATCT 0.71828 -35 CCATATCCCTGTTCTCTACCTACTCTCACTT 12 194 0 GTCTCTACCT 0.776634 -107 ACTTATCCTTACTTTTTTCAGTTGCTTAA 12 282 0 TTCTTTTTTC 0.769695 -19 ACACTGTTATTGACTTTTCCTCATAACATCG 13 32 0 TGCTTTTCCT 0.750253 -269 TCCTAAAAAGATTCTCTTTTCTTTCCTCTAC 13 195 0 ATCTCTTTTC 0.839625 -106 TCCGGAACAATGTCTCTCTTTACAACCTGTG 14 27 0 TGCTCTCTTT 0.755836 -129 TTGTAAGGAATTGCTTTATCTAGCCTTTAAT 14 115 0 TTCTTTATCT 0.8349 -41 AATTTTCTCTCTTTGTTTAATTGT 14 142 0 TTCTCTCTTT 0.905821 -14 TACGCGCGTAATTCTCTTTTTTAATAAGAGA 15 12 1 ATCTCTTTTT 0.912303 -220 ACTGGGTCGTTTTCTCTTTCTTGGAAATCCG 15 61 0 TTCTCTTTCT 0.982559 -171 ACGACCCAGTTTTCTCTTTCTATTTTGGAGA 15 82 1 TTCTCTTTCT 0.982559 -150 GATATGCAGCTTGCTTTCTCCAAAATAGAAA 15 98 0 TTCTTTCTCC 0.82878 -134 CAAGCTGCATATCCTCTCTCTTCAAAATTTC 15 116 1 ATCTCTCTCT 0.93776 -116 ** ******** Masking position 5 Map Score: 44.0652 Number of sites scoring better than the average of aligned sites = 630 Number in coding regions = 630 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 2 TTGGGAAAGGACTCATCCCTAGTTTAGCTG 2 133 0 ACTCATCCCT 0.876973 -142 AGAAGCTGTACCAACTCCTTGAAACTTATT 2 202 0 CCAACTCCTT 0.691096 -73 AAGAATAAAACTTCATCCCTAGCGCAGACT 3 259 1 CTTCATCCCT 0.761546 -42 AGGATGCTCTCCTTCTCCTTTCGGATT 4 8 0 CCTTCTCCTT 0.961364 -61 AGGAGAGCATCCTTCTCCTTTCACCTATTG 4 25 1 CCTTCTCCTT 0.961364 -44 CAGGCTGCACACTCATCCCAAAGCAACAGA 6 23 0 ACTCATCCCA 0.675975 -278 ACCAGATCCCTAAGACACGCA 6 290 0 CCAGATCCCT 0.915016 -11 AATAAATCCTCTTTCTCCTAGAAAGTTTAG 9 173 1 CTTTCTCCTA 0.458228 -128 ACCCACTCTCCCTTATCCTTTATGGGAATC 9 223 0 CCTTATCCTT 0.964736 -78 GCCTTTCCGCCCATATCCCTGTTCTCTACC 12 205 0 CCATATCCCT 0.961598 -96 ACTTATCCTTACTTTTTTCA 12 291 0 ACTTATCCTT 0.876421 -10 CACTCCCCCGCCATCTCCTAAAAAGATTCT 13 211 0 CCATCTCCTA 0.805956 -90 AACAGATCCCTTGGCTTCGTG 13 290 0 ACAGATCCCT 0.736228 -11 GGGCTGATAACCTTATCCCTCCGGAACAAT 14 47 0 CCTTATCCCT 0.97773 -109 ********** Masking position 6 Map Score: 14.311 Number of sites scoring better than the average of aligned sites = 204 Number in coding regions = 203 Number in noncoding regions = 1 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 3 CGTTTTATATAAAGAAGCTTTTACGTAGAG 1 42 1 AAAGAAGCTT 0.98498 -90 GTAGTTACAGAAAGAAGCTTTGTGATCGAG 1 77 0 AAAGAAGCTT 0.98498 -55 TTCAGCAAAACAAGAAGCTGTACCAACTCC 2 214 0 CAAGAAGCTG 0.96058 -61 ACAAGGGCTTCAAAAAGCTTTCTCAAATAG 6 259 0 CAAAAAGCTT 0.974583 -42 TCCTACTAGGAAAAAAGCTT 9 1 0 AAAAAAGCTT 0.969468 -300 CAGCAAAAGTCAAGAAGCTTCCTACTAGGA 9 20 0 CAAGAAGCTT 0.98753 -281 TCACTCATATAAAAAAGCTTCAGGAAAAAT 13 106 0 AAAAAAGCTT 0.969468 -195 ********** Masking position 5 Map Score: 11.7053 Number of sites scoring better than the average of aligned sites = 52 Number in coding regions = 52 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 4 GAGAACTTTGAAAACAACGAAAAAAAGCCCGA 3 69 0 AAACAAGAAA 0.567884 -232 CCCTACAAATATAGGAAGAAAAGAGAACAGAG 3 100 0 ATAGAAAAAA 0.944475 -201 CCCAGAAAGAGTAAGAATAAAACTTCATCCCT 3 247 1 GTAGAAAAAA 0.921266 -54 TTATATTTTTATAGGAAAGAATT 4 56 1 ATAGAAGAAT 0.625249 -13 GAGGAAACTAATAATAAAGAAAAGAGCAATTT 6 70 1 ATATAAGAAA 0.573016 -231 ACTCTTATATGGAGCAAAGAAATGTTTTGTTT 6 118 0 GGACAAGAAA 0.72792 -183 CTTTTTTTGTGAAAGAGTAAAAAGACGAGTTC 6 152 1 GAAGAGAAAA 0.643038 -149 ATTTAAGATCATACGAGGGAAATAAGTTCTAT 8 79 1 ATAGAGGAAA 0.94761 -91 AATCCTTTTCATAACAAAAAAATAGAACTTAT 8 100 0 ATACAAAAAA 0.843834 -70 AAGATTAATTATAACAACAAAATAAAATCCTT 8 125 0 ATACAAAAAA 0.843834 -45 AACTATAACTATAAGAAAAAGAAACGATGCTT 9 139 0 ATAGAAAAGA 0.656112 -162 CTTACATTCAAGATGAGAGAAAAAGAATCCCC 10 22 0 AGAGAGGAAA 0.90946 -42 GTACGCGATGTTATGAGGAAAAGTCAATAACA 13 27 1 TTAGAGAAAA 0.597602 -274 TTTGTAAGCAGGATGAAGAAAAAATTTTTCCT 13 83 1 GGAGAAAAAA 0.866632 -218 AAGCTTTTTTATATGAGTGAAAAGCGTTTCTT 13 116 1 ATAGAGGAAA 0.94761 -185 GACTGCTAGTAGAGGAAAGAAAAGAGAATCTT 13 187 1 AGAGAAGAAA 0.92449 -114 CTCTTTTTTAATAAGAGAAAAACGTGTTCCCA 15 25 1 ATAGAGAAAA 0.933135 -207 AGTGATTGTCGTAAGAAGAAAAATATTGCTAC 15 186 1 GTAGAAAAAA 0.921266 -46 *** *** **** Masking position 6 Map Score: 12.8466 Number of sites scoring better than the average of aligned sites = 223 Number in coding regions = 223 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 5 TGGCAAAGTATTTTGTGGAAAAGGGCTGTTTT 2 89 0 TTTTTGGAAA 0.833735 -186 TCATCCCTAGTTTAGCTGGAAGACAGTTAATG 2 119 0 TTTACTGAAG 0.567211 -156 CTTAAGAAGGCCTTTGGGAAAGGACTCATCCC 2 144 0 CCTTGGGAAG 0.8092 -131 CAGCTTCTTGTTTTGCTGAAAATAATGAAAAC 2 224 1 TTTTCTGAAA 0.661696 -51 TATTCTTACTCTTTCTGGGAAGAGCACCATTC 3 234 0 CTTTTGGAAG 0.617284 -67 TTGGTTATATTTTTATAGGAAAGAATT 4 52 1 TTTTTAGAAA 0.735331 -17 AGAGTTACTTTTTTTGTGAAAGAGTAAAAAGA 6 145 1 TTTTGTGAAG 0.742223 -156 CCTATAGGATCCTCTTAGAAAATGGCTAAAAG 7 141 0 CCTCTAGAAA 0.557168 -36 CATTTTTAACCTTTTTAGAAAATAGACAT 8 8 0 CTTTTAGAAA 0.776124 -162 TTATAATTAATCTTGTTGAAAGATTTTATGTT 8 143 1 TCTTTTGAAG 0.887331 -27 AAGCTTTTTTCCTAGTAGGAAGCTTCTTGACT 9 11 1 CCTATAGAAG 0.712397 -290 GCTTCTTGACTTTTGCTGTAAGAATATGATCA 9 32 1 TTTTCTGAAG 0.790563 -269 TATTAAAGCACCTTATGGTAAGCGACTAGGGA 9 80 1 CCTTTGGAAG 0.929908 -221 AAATCCTCTTTCTCCTAGAAAGTTTAGACTTT 9 176 1 TCTCTAGAAG 0.590467 -125 CTCCCTTATCCTTTATGGGAATCTAATCTTTT 9 214 0 CTTTTGGAAT 0.500677 -87 GAATTCAAAGTCTTATTGAAAAACGTAATGAG 12 50 1 TCTTTTGAAA 0.803255 -251 TGAGCTTGTGCCTAACGGAAAATCATGATAGC 12 78 1 CCTACGGAAA 0.500174 -223 CCTACTCTCACTTCCTTGCAAAAGTATTTTTA 12 175 0 CTTCTTGAAA 0.70077 -126 TTTTCAGTTGCTTAATGGCAAACTGATTCTTC 12 265 0 CTTATGGAAA 0.732192 -36 TCTGGGATCTTTTTTTTGTAAGCAGGATGAAG 13 69 1 TTTTTTGAAG 0.900033 -232 TCTCTCTTTGTTTAATTGTAAGGAATTGCTTT 14 129 0 TTTATTGAAG 0.757685 -27 GTCGTTTTCTCTTTCTTGGAAATCCGAGAATG 15 55 0 CTTTTTGAAA 0.845048 -177 TCTCTTTCTATTTTGGAGAAAGCAAGCTGCAT 15 94 1 TTTTGAGAAG 0.636916 -138 **** *** *** Masking position 3 Map Score: 15.4135 Number of sites scoring better than the average of aligned sites = 472 Number in coding regions = 472 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 6 ATCTCACAAACAAAACATTTCTTTGCTCCATA 6 111 1 CAAACTTTCT 0.923255 -190 CAAGGGCTTCAAAAAGCTTTCTCAAATAGTTT 6 256 0 AAAAGTTTCT 0.866357 -45 GTGCACATCTAAAGTTCTTTCTCTAAATAAAT 7 24 1 AAAGTTTTCT 0.865488 -153 GTCGAGCAAGAAAATCATTTCT 12 1 0 AAAACTTTCT 0.937872 -300 ACTTCCTTGCAAAAGTATTTTTACAAAAAGCA 12 166 0 AAAATTTTTT 0.64267 -135 TGCTTAATGGCAAACTGATTCTTCTTTTAATC 12 257 0 CAAATATTCT 0.810684 -44 AGCTTCAGGAAAAATTTTTTCTTCATCCTGCT 13 89 0 AAAATTTTCT 0.964383 -212 TATATGAGTGAAAAGCGTTTCTTTAGAGGTTG 13 125 1 AAAACTTTCT 0.950172 -176 TAGCAGTCTTAAAAATTATTCTATATCCATTA 13 163 0 AAAATATTCT 0.870233 -138 GCATCTTCTAAAATCTATTTCTTTGAGATTTT 13 240 1 AAATTTTTCT 0.884496 -61 AAAATAGTAGCAATATTTTTCTTCTTACGACA 15 192 0 CAATTTTTCT 0.827539 -40 **** * ***** Masking position 3 Map Score: 6.16594 Number of sites scoring better than the average of aligned sites = 168 Number in coding regions = 168 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 7 GGGAGAACTCAGAGGGGGTGCTGGTCACTAG 3 13 0 AGGGGGGTGC 0.988109 -288 CTAGCAGGTTCGGGGGAGAACTCAGAGGGGG 3 26 0 CGGGGAGAAC 0.815753 -275 CGAACCTGCTAGAGGGGTTGCTTTTCGGGCT 3 45 1 AGGGGGTTGC 0.845518 -256 ATCCGAAAGGAGAAGGAGAGCATCCTTCTCC 4 12 1 AGAGGAGAGC 0.933396 -57 GCATAAGGAAAGCGGGAGAGGAAACTAATAA 6 53 1 AGGGGAGAGG 0.978074 -248 GTCATCTGTCAGAGAAAGAGCAAAGACAAGA 6 184 0 AGGAAAGAGC 0.889386 -117 TAATTTATTTAGAGAAAGAACTTTAGATGTG 7 27 0 AGGAAAGAAC 0.615496 -150 ATAAAGGATAAGGGAGAGTGGGTAGAGGATA 9 230 1 AGGAGAGTGG 0.953564 -71 AGGTTTAATCAGTGGAGGTGGAAAT 9 286 1 AGGGAGGTGG 0.938028 -15 AATGTAAGCTAGTAAGGGAGCCCCTTTA 10 46 1 AGAAGGGAGC 0.850181 -18 ATGACTGGGGAGTAGAGGTGGGCCTGTAACT 11 67 1 AGAGAGGTGG 0.75084 -69 TTTGCAAGGAAGTGAGAGTAGGTAGAGAACA 12 185 1 AGGAGAGTAG 0.803471 -116 TAGGAGATGGCGGGGGAGTGCATCTTCTAAA 13 221 1 CGGGGAGTGC 0.962635 -80 ** ******** Masking position 2 Map Score: 11.088 Number of sites scoring better than the average of aligned sites = 232 Number in coding regions = 232 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 8 TATAAAACGCTGTTTCAGTTGAAAAACGCTC 1 20 0 TGTTTAGTTG 0.940132 -112 ATACTAGAAGTTTTTGATTTGGAGAGCCAAA 2 12 0 TTTTTATTTG 0.945898 -263 TTTTCGGGCTTTTTTTCGTTGTTTTCAAAGT 3 66 1 TTTTTCGTTG 0.895101 -235 AGCAAAGAAATGTTTTGTTTGTGAGATGTAA 6 107 0 TGTTTGTTTG 0.752862 -194 GACATAGAAGTTTTTCATTTGAATTCAAAGT 12 30 1 TTTTTATTTG 0.945898 -271 TATCCTTACTTTTTTCAGTTGCTTAATGGCA 12 277 0 TTTTTAGTTG 0.965195 -24 TTCCTGAAGCTTTTTTATATGAGTGAAAAGC 13 110 1 TTTTTATATG 0.758054 -191 TTCTTTGAGATTTTTTAGTTGTTGGTATTCG 13 258 1 TTTTTAGTTG 0.965195 -43 ***** ***** Masking position 5 Map Score: 5.21706 Number of sites scoring better than the average of aligned sites = 24 Number in coding regions = 24 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 9 CTTATGGTAAGCGACTAGGGAAAATGGGGCG 9 91 1 GCGACTAGGA 0.917308 -210 AAGGATAAGGGAGAGTGGGTAGAGGATAAAG 9 233 1 GAGAGTGGGA 0.978485 -68 CTGTAACTCTGAGACTAGTCAAGATAGAGGC 11 90 1 GAGACTAGTA 0.905237 -46 CCTACCCCTAGAGCATGGGGAGGTTAGGCCT 12 131 1 GAGCATGGGA 0.928383 -170 GCAAGGAAGTGAGAGTAGGTAGAGAACAGGG 12 188 1 GAGAGTAGGA 0.966299 -113 AGAGTAGGTAGAGAACAGGGATATGGGCGGA 12 199 1 GAGAACAGGA 0.875849 -102 CCTTTAGAAGGAGGCTGGTGATTAAAAGAAG 12 238 1 GAGGCTGGTA 0.823392 -63 TTGGAAATCCGAGAATGGGAACACGTTTTTC 15 41 0 GAGAATGGGA 0.976814 -191 ********* * Masking position 11 Map Score: 2.27997 Number of sites scoring better than the average of aligned sites = 48 Number in coding regions = 48 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 10 CGAGACAGGCTCTACGTAAAAGCTTCTTTATA 1 49 0 TCACTAAAAG 0.86548 -83 ATTTCTTTGCTCCATATAAGAGTTACTTTTTT 6 127 1 TCATTAAGAG 0.865479 -174 AGAAAAAGAATCCCCTTAGAAGTTAC 10 5 0 TCCCTAGAAG 0.94982 -59 GATAGTAGTCTCGATATAGAAGAAAATCAAGA 11 25 0 TCATTAGAAG 0.966328 -111 ATTTTCTTGCTCGACATAGAAGTTTTTCATTT 12 18 1 TCACTAGAAG 0.96567 -283 CGGAAAGGCTTCCCTTTAGAAGGAGGCTGGTG 12 226 1 TCCTTAGAAG 0.950766 -75 GAAAAGAGAATCTTTTTAGGAGATGGCGGGGG 13 205 1 TCTTTAGGAG 0.874048 -96 GTTTTCTCTTTCTATTTTGGAGAAAGCAAGCT 15 90 1 TCATTTGGAG 0.834462 -142 ** ** ****** Masking position 11 Map Score: 2.6916 Number of sites scoring better than the average of aligned sites = 55 Number in coding regions = 55 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 11 ********** No masking Map Score: 6.12021e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 12 ********** No masking Map Score: 6.12021e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 13 TGCTAGTGACCAGCACCCCCTCTGAGTTCTC 3 11 1 CAGCACCCCT 0.94703 -290 AAAGCCCGAAAAGCAACCCCTCTAGCAGGTT 3 47 0 AAGCACCCCT 0.986391 -254 CCAATCTCATAGGCGTCCCCACATATTAGGA 3 188 0 AGGCGCCCCA 0.90226 -113 AAATGGCTAAAAGAAACCACTGCAGCAGTAT 7 123 0 AAGAACCACT 0.745784 -54 GACCATTACCAAGCGCCCCATTTTCCCTAGT 9 104 0 AAGCGCCCAT 0.850566 -197 ATGAGAGAAAAAGAATCCCCTTAGAAGTTAC 10 11 0 AAGAACCCCT 0.966964 -53 TAAGCTAGTAAGGGAGCCCCTTTA 10 50 1 AGGGACCCCT 0.77434 -14 TAGTCGATTCAGGATGCCCCTACCCCTAGAG 12 113 1 AGGATCCCCT 0.937644 -188 ATGGGCGGAAAGGCTTCCCTTTAGAAGGAGG 12 221 1 AGGCTCCCTT 0.823107 -80 ***** ***** Masking position 7 Map Score: 4.5978 Number of sites scoring better than the average of aligned sites = 66 Number in coding regions = 66 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 14 ********** No masking Map Score: 6.12021e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 15 ********** No masking Map Score: 6.12021e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0