AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00360_ctra_reg_300.orf -o00360_ctra_300.ace -a/home/amcguire/genomes/ORF_ctra.txt -z/home/amcguire/genomes/ctra.fna -g0.41 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.41 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 gatC 200 Glu-tRNA Gln Amidotransferase (C subunit) #2 htrB 131 Acyltransferase #3 ybbP 274 hypothetical protein #4 dhnA 300 Predicted 1,6-Fructose biphosphate aldolase (dehydrin family) #5 ydaO 153 PP-Loop Superfamily ATPase #6 surE 100 SurE-like Acid Phosphatase #7 ubiA 111 4-hydroxybenzoate octaphenyltransferase #8 yaeT 300 Omp85 Analog #9 CT242 68 (OmpH-Like Outer Membrane Protein) #10 lpxD 27 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase #11 CT389 181 hypothetical protein #12 aspC 89 Aspartate Aminotransferase #13 lpxC 100 UDP-3-O-Acyl GlcNAc Deacetylase #14 cutE 63 Apolipoprotein N-Acetyltransferase #15 yciA 135 Acyl-CoA Thioester Hydrolase #16 CT538 300 hypothetical protein #17 greA 113 Transcription Elongation Factor G #18 tyrB 187 Aromatic AA Aminotransferase #19 hemA 300 Glutamyl tRNA Reductase Motif number 1 TAACTCTGACTTTTAATCTTTTTTGCAATTTAATAAAGT 1 38 1 TTTTTTTTTT 0.96686 -163 TGCTATGATGAGCGTTTTTCAACTGAAACAGCGT 2 6 1 TATGTTTTTT 0.660391 -126 CTAAAAAGAATACTAGAAGTTTTTGATTTGGAGAGCCAA 3 13 0 TCTGTTTTTT 0.84137 -262 AACTATTTTCTCTTTTTAATTTTTATTCTGCA 4 4 1 TTTCTTTTTT 0.960002 -297 AATCGCAGAGTCTTTCATTTTCTTTACCTCACCTTCTCA 4 95 1 TTTTTTCTTT 0.886778 -206 ACGGAGAGTGTGTTGCGCTTTTTTGGGTTTTCACCATAT 4 251 1 TTTTTTTTTT 0.96686 -50 CGTAATGAGCTATTAGATCTTTTTAAAATAATAAGAAAA 6 63 0 TTTCTTTTTT 0.960002 -38 GAGGGGTTGCTTTTCGGGCTTTTTTTCGTTGTTTTCAAA 8 56 1 TTTCTTTTTT 0.960002 -245 AAGTTCTCTCTGTTCTCTTTTCTTCCTATATTTGTAGGG 8 93 1 TTTTTTCTTT 0.886778 -208 AGACCCCGTATATTATCCTTTTTTTTTTTTAGCAAGCAA 13 55 0 TTTTTTTTTT 0.96686 -46 ACTTATCCTTACTTTTTTCAGTTGCTTAATGG 16 279 0 TTCCTTTTTT 0.765064 -22 ATAATAAAATTTTTCTTGTTTTTTGTGATGTAATATTGC 17 36 1 TTTTTTTTTT 0.96686 -78 TGTGATGTAATATTGCTCTTTTTTGTTATTCGGCGTATA 17 59 1 TTTTTTTTTT 0.96686 -55 CACTGCTGCTTACTGTCTTTTTTTCCAGTAAGATGACAG 18 139 0 TCTTTTTTTT 0.894386 -49 GAAACGCCTTTTTTAACGGTTTTTCTATTTTCGTCTCCA 19 148 1 TTTGTTTTTT 0.948114 -153 * ** ****** * Masking position 10 Map Score: 18.0853 Number of sites scoring better than the average of aligned sites = 101 Number in coding regions = 101 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 2 TGCTATGATGAGCGTTTTTCAACTGAAACAG 2 11 1 AGCTTTTTCA 0.724231 -121 TCTACGTAAAAGCTTCTTTATATAAAACGCT 2 40 0 AGCTCTTTAT 0.766157 -92 TCGATCACAAAGCTTCTTTCTGTAACTACTA 2 78 1 AGCTCTTTCT 0.978569 -54 TTGTTAAAACAGCCCTTTTCCACAAAATACT 3 84 1 AGCCTTTTCC 0.861686 -191 TTCTTTACAAAGCCCTTTTCTGTGCAAAAGA 5 13 0 AGCCTTTTCT 0.970659 -141 TTTGTAAAGAAGCTCTTTTCTTTCTAAGACT 5 33 1 AGCCTTTTCT 0.970659 -121 TTCTGGGAAGAGCACCATTCTTACTTGGTCA 8 223 0 AGCCCATTCT 0.929046 -78 GGAGAAGGAGAGCATCCTTCTCCTTTCACCT 9 20 1 AGCTCCTTCT 0.977115 -49 CCGACACTCGAGCGCTCTTCTCCTAAAAATC 11 106 1 AGCCTCTTCT 0.968689 -76 TGAGTCTAATAGCCTCTATCTTGACTAGTCT 15 101 0 AGCTCTATCT 0.840991 -35 ATCACCCTTCTATATGAGTCT 15 125 0 ATCCCCTTCT 0.830629 -11 TTTAATCACCAGCCTCCTTCTAAAGGGAAGC 16 233 0 AGCTCCTTCT 0.977119 -68 *** ******* Masking position 1 Map Score: 15.353 Number of sites scoring better than the average of aligned sites = 144 Number in coding regions = 144 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 3 ATCTTTAATAGAGAGAACAAAAAAAGACTTTAT 1 70 0 GAGAGAAAAA 0.976494 -131 AGGTAAGTCTTAGAAAGAAAAGAGCTTCTTTAC 5 36 0 TAGAAAGAAA 0.718204 -118 AGGAAGAAAAGAGAACAGAGAGAACTTTGAAAA 8 87 0 GAGAACAAGA 0.870253 -214 GCTCTTCCCAGAAAGAGTAAGAATAAAACTTCA 8 241 1 GAAAGAGAAA 0.810363 -60 AATCCGAAAGGAGAAGGAGAGCATCCTT 9 6 1 GAAAGGAAAA 0.823045 -63 ACCAATAGGTGAAAGGAGAAGGATGCTCTCCTT 9 24 0 GAAAGGAAAA 0.823045 -45 AACTCGGAAGTAGAGAAAAAACAAGATTTTTAG 11 128 0 TAGAGAAAAA 0.934885 -54 GTAATTTTTAGAGAGCACTGAGAAAAG 12 5 0 GAGAGCATGA 0.609183 -85 GCTTGCTTGCTAAAAAAAAAAAAGGATAATATA 13 53 1 TAAAAAAAAA 0.498443 -48 CATTCAAGATGAGAGAAAAAGAATCCCCTTAGA 14 17 0 GAGAGAAAAA 0.976494 -47 AGTCTCGATATAGAAGAAAATCAAGAAATTCCT 15 18 0 TAGAAGAAAA 0.735035 -118 TGAGAGTAGGTAGAGAACAGGGATATGGGCGGA 16 197 1 TAGAGAAAGA 0.880588 -104 GCTCAGTTGGTAGAGCGCAACAATGGCATTGTT 18 50 0 TAGAGCGAAA 0.870253 -138 ATAATTTCTGAGAAAACAATCAGCTAATAGTT 19 10 1 GAGAAAAAAA 0.934885 -291 TTTTTCTAAAGAGAGCATAACTATTAGCTGATT 19 28 0 GAGAGCAAAA 0.974216 -273 TTTCAATGCAGAGAACGAAGAGAGTCTCAAAAA 19 200 1 GAGAACGAGA 0.77503 -101 TGAGCCAACCGAGAGAAGAAGCATACAATCTTT 19 263 1 GAGAGAAAAA 0.976494 -38 ******* ** * Masking position 4 Map Score: 12.9798 Number of sites scoring better than the average of aligned sites = 338 Number in coding regions = 337 Number in noncoding regions = 1 Number of orfs with sites within 600 bp upstream = 1 Fraction of orfs with sites within 600 bp upstream = 0.000160617 Motif number 4 CTGCCATGTCGCATCCGCTCTGACGGAGAGT 4 229 1 GCACCGCTCT 0.961357 -72 CTAGTGACCAGCACCCCCTCTGAGTTCTCCC 8 13 1 GCACCCCTCT 0.992332 -288 AGCCCGAAAAGCAACCCCTCTAGCAGGTTCG 8 45 0 GCACCCCTCT 0.992332 -256 AGCTAGTAAGGGAGCCCCTTTA 14 52 1 GGACCCCTTT 0.987994 -12 CAGAGTTACAGGCCCACCTCTACTCCCCAGT 15 70 0 GGCCACCTCT 0.963801 -66 TGGGCGGAAAGGCTTCCCTTTAGAAGGAGGC 16 222 1 GGCTCCCTTT 0.928012 -79 GATGGCTCCCCTTTTTAGTCCGGA 17 100 0 GGCCCCCTTT 0.990038 -14 *** ******* Masking position 9 Map Score: 6.82529 Number of sites scoring better than the average of aligned sites = 24 Number in coding regions = 23 Number in noncoding regions = 1 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 5 CTTCGTACTTTTTTACACTAAAAACACTCTTACT 1 130 0 TTTTCAAAAA 0.946352 -71 TGAAACAGCGTTTTATATAAAGAAGCTTTTACGT 2 34 1 TTTTTAAAGA 0.869965 -98 AAAACAGCCCTTTTCCACAAAATACTTTGCCATT 3 89 1 TTTTCAAAAA 0.945829 -186 CAGCTTCTTGTTTTGCTGAAAATAATGAAAACAC 3 224 1 TTTTCTAAAA 0.635328 -51 ATTCTTTTGCACAGAAAAGGGCTTTGTA 5 5 1 TTTTCAGAAA 0.888856 -149 TTCCCTAATTTTGTCCATGGAGGACTACATTGTA 5 114 0 TTGTCAGAGA 0.715498 -40 TCAACGTACTTTTTTCAGCAAGAAAAGCTCCTTC 7 34 1 TTTTCAAAGA 0.973861 -78 TTGGTTATATTTTTATAGGAAAGAATT 9 52 1 TTTTTAAAAA 0.762259 -17 ATCCTTTTTTTTTTTTAGCAAGCAAGCGATATCA 13 46 0 TTTTTAAAGA 0.87174 -55 GCTCATTACGTTTTTCAATAAGACTTTGAATTCA 16 49 0 TTTTCAAAGC 0.865505 -252 GCAAAAGTATTTTTACAAAAAGCAAAACAGGCCT 16 156 0 TTTTCAAAGA 0.974015 -145 GTAAAAATACTTTTGCAAGGAAGTGAGAGTAGGT 16 174 1 TTTTCAGAAT 0.624604 -127 GAAGAATCAGTTTGCCATTAAGCAACTGAAAAAA 16 265 1 TTTGCAAAGA 0.845411 -36 TACTGTCTTTTTTTCCAGTAAGATGACAGCTTGT 18 134 0 TTTTCAAAGT 0.884487 -54 **** ** *** * Masking position 11 Map Score: 11.1032 Number of sites scoring better than the average of aligned sites = 144 Number in coding regions = 144 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 6 AACTCTGACTTTTAATCTTTTTTGCAATTTAA 1 39 1 TTAACTTTTT 0.593589 -162 AATAAAATCCTTCGTACTTTTTTACACTAAAA 1 141 0 TCGTCTTTTT 0.809573 -60 AAAAACTTCTAGTATTCTTTTTAGTATATATA 3 28 1 ATATCTTTTT 0.710125 -247 TTGAAGTGTTTTCATTATTTTCAGCAAAACAA 3 231 0 TCATATTTTC 0.635113 -44 AACGAACTTCAACGTACTTTTTTCAGCAAGAA 7 26 1 ACGTCTTTTT 0.862497 -86 GTAGAGAAAAAACAAGATTTTTAGGAGAAGAG 11 120 0 ACAAATTTTT 0.891 -62 TCATCTGTCCAGCGTAATTTTTAGAGAGCACT 12 19 0 ACGTATTTTT 0.852557 -71 GACCCCGTATATTATCCTTTTTTTTTTTTAGC 13 61 0 ATATCTTTTT 0.710126 -40 ACTACATGCTATCATGATTTTCCGTTAGGCAC 16 85 0 ACATATTTTC 0.719739 -216 TAAATAAAAGATCGAGATTTTTGTT 17 4 0 ACGAATTTTT 0.835699 -110 TTTATTTAATAATAAAATTTTTCTTGTTTTTT 17 28 1 ATAAATTTTT 0.665099 -86 TACTACGCCTTACATTATTTTTCTAAAGAGAG 19 46 0 TCATATTTTT 0.866374 -255 GTCTCCAGACTACAAAATTTTTTCAATGCAGA 19 180 1 TCAAATTTTT 0.85082 -121 GTATTTTTATACCAATATTTTTGAGACTCTCT 19 218 0 ACAAATTTTT 0.893734 -83 AGAAGAAGCATACAATCTTTTTCTTTAGAAAG 19 276 1 TCAACTTTTT 0.860803 -25 * *** ****** Masking position 8 Map Score: 8.87005 Number of sites scoring better than the average of aligned sites = 182 Number in coding regions = 182 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 7 GACGTTTCTCCAACGTAGATGT 1 3 1 CGTTTCTCCA 0.909524 -198 ATACTATGCACGTTTCCCTGTCACCAGTTG 3 57 1 CGTTTCCCTG 0.965656 -218 TAAAACAGCCCTTTTCCACAAAATACTTTG 3 88 1 CTTTTCCACA 0.895646 -187 GACTCTGCGATTTTTCCCCGTTCTAAAGAT 4 77 0 TTTTTCCCCG 0.758443 -224 ACTTTCAACACGTTTCCCTAATTTTGTCCA 5 131 0 CGTTTCCCTA 0.9466 -23 CGTTGAAGTTCGTTTCAACGTACAGATAA 7 10 0 CGTTTCAACG 0.879493 -102 CGTTTTTACGTTTCCTCACACAATTAAC 11 9 1 CGTTTCCTCA 0.936912 -173 TTAAAAAAGGCGTTTCCACGGCTTAATCTT 19 134 0 CGTTTCCACG 0.983231 -167 ********** Masking position 5 Map Score: 4.17605 Number of sites scoring better than the average of aligned sites = 69 Number in coding regions = 69 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 8 GGGAAAGGACTCATCCCTAGTTTAGCTGGA 3 131 0 TCATCCCTAG 0.931582 -144 AGATAAACGATCTTTCCTGGAGTCTTTAGT 4 143 0 TCTTTCCTGG 0.968019 -158 TGTCTATAAATCTTTCTTAGCATGCAAACA 4 197 0 TCTTTCTTAG 0.842232 -104 TCTTTCTAAGACTTACCTGGATTTCTAATT 5 51 1 ACTTACCTGG 0.718898 -103 TCCTTTCCTAGATTTAAATAA 6 2 1 CCTTTCCTAG 0.878274 -99 AGAGCACCATTCTTACTTGGTCAGAAGCCA 8 216 0 TCTTACTTGG 0.737152 -85 GAATAAAACTTCATCCCTAGCGCAGACTTT 8 261 1 TCATCCCTAG 0.931582 -40 AATTCTTTCCTATAAAAATATAA 9 56 0 TCTTTCCTAT 0.729583 -13 TAACCTAGTTTCTTCCCTCGGGGTATTAGC 18 81 0 TCTTCCCTCG 0.970554 -107 ATTGTATGCTTCTTCTCTCGGTTGGCTCAT 19 262 0 TCTTCTCTCG 0.742247 -39 ********** Masking position 4 Map Score: 3.58028 Number of sites scoring better than the average of aligned sites = 93 Number in coding regions = 93 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 9 AATTGCAAAAAAGATTAAAAGTCAGAGTTA 1 38 0 AAGATTAAAA 0.772966 -163 TGATCTTATGCAGAATAAAATCCTTCGTAC 1 156 0 CAGAATAAAA 0.946716 -45 TCAATGTGTGCAGAATAAAAATTAAAAAGA 4 21 0 CAGAATAAAA 0.946716 -280 CAGAAAGAGTAAGAATAAAACTTCATCCCT 8 249 1 AAGAATAAAA 0.918043 -52 TCTTTTATTTAATAATAAAATTTTTCTTGT 17 25 1 AATAATAAAA 0.555726 -89 CGTATATTTCCGGACTAAAAAGGGGAGCCA 17 92 1 CGGACTAAAA 0.850718 -22 AGTGAGACAGAAGACTAAAAGAAATACTAC 19 72 0 AAGACTAAAA 0.931162 -229 TTTTCGTCTCCAGACTACAAAATTTTTTCA 19 175 1 CAGACTACAA 0.850718 -126 ********** Masking position 4 Map Score: 3.25685 Number of sites scoring better than the average of aligned sites = 45 Number in coding regions = 45 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 10 GAAGCTTTTACGTAGAGCCTGTCTCGATCACAA 2 55 1 CGAGAGCTTC 0.990428 -77 GGGGAAAAATCGCAGAGTCTTTCATTTTCTTTA 4 88 1 CGAGAGCTTC 0.985807 -213 TCCGCTCTGACGGAGAGTGTGTTGCGCTTTTTT 4 242 1 CGAGAGGTTT 0.959222 -59 TCGAAGATGCTCCTATTTTAAATA 4 287 0 CGAGATCTCT 0.879094 -14 CCACATATTAGGAAGAGACTACTCAAGACCTAT 8 168 0 GGAGAGCTCT 0.955463 -133 GACTAGTCAAGATAGAGGCTATTAGACTCATAT 15 102 1 GAAGAGCTTT 0.724071 -34 GGGATATGGGCGGAAAGGCTTCCCTTTAGAAGG 16 216 1 CGAAAGCTCC 0.920249 -85 ATGCAGAGAACGAAGAGAGTCTCAAAAATATTG 19 205 1 CGAGAGGTTC 0.9739 -96 ** **** ** ** Masking position 6 Map Score: 2.04277 Number of sites scoring better than the average of aligned sites = 63 Number in coding regions = 63 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 11 ATCCTTCGTACTTTTTTACACTAAAAACACTCT 1 134 0 CTTTTTACAA 0.827313 -67 TACGTAAAAGCTTCTTTATATAAAACGCTGTTT 2 36 0 CTTTTTATAA 0.788206 -96 ACACCAAGGTTATTTTAATATAACTGATCTTTA 4 51 1 TATTTAATAA 0.661361 -250 GGGTTTTCACCATATTTAAAATAGGAGCATCTT 4 275 1 CATTTTAAAA 0.866556 -26 AAATTTCCCTCATGTTTACACTACAATGTAGTC 5 93 1 CATTTTACAA 0.950764 -61 TTTTTCTTATTATTTTAAAAAGATCTAATAGCT 6 62 1 TATTTAAAAA 0.421268 -39 CTATTGGTTATATTTTTATAGGAAAGAATT 9 49 1 TATTTTATAA 0.887445 -20 ATGAGAGTCTCATCTTTATATTACCGTCCACCA 12 47 1 CATTTTATAA 0.937496 -43 CTTGCAAAAGTATTTTTACAAAAAGCAAAACAG 16 160 0 TATTTTACAA 0.90513 -141 ACTAGGTTATCATGTTTACACGATTTAGGACAA 18 102 1 CATTTTACAA 0.950764 -86 CTTTGTTTCGTATTTTTATACCAATATTTTTGA 19 226 0 TATTTTATAA 0.887445 -75 *** ****** * Masking position 8 Map Score: 5.62409 Number of sites scoring better than the average of aligned sites = 30 Number in coding regions = 30 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 12 TTAAGATCTTTGAGAAGGTGAGGTAAAGAA 4 114 0 TGAGAAGGTG 0.875432 -187 TGTATTGTAATCAGAAGGAGCTTTTCTTGC 7 51 0 TCAGAAGGAG 0.96479 -61 GGTGCTCTTCCCAGAAAGAGTAAGAATAAA 8 238 1 CCAGAAAGAG 0.79325 -63 AATCCGAAAGGAGAAGGAGAGCATCCTTC 9 10 1 GGAGAAGGAG 0.979644 -59 ATAGGTGAAAGGAGAAGGATGCTCTCCTTC 9 23 0 GGAGAAGGAT 0.825111 -46 GCAATGAAATCCAGAATGAGTATGCTTGTT 11 44 0 CCAGAATGAG 0.871227 -138 AGGCTTCCCTTTAGAAGGAGGCTGGTGATT 16 231 1 TTAGAAGGAG 0.873365 -70 TACGAAACAAAGAGAATGAGCCAACCGAGA 19 247 1 AGAGAATGAG 0.876788 -54 GAGCCAACCGAGAGAAGAAGCATACAATCT 19 264 1 AGAGAAGAAG 0.75309 -37 ********** Masking position 5 Map Score: 2.94341 Number of sites scoring better than the average of aligned sites = 180 Number in coding regions = 180 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 13 TTTAATAAAGTCTTTTTTTGTTCTCTCTAT 1 66 1 TCTTTTTTTG 0.914195 -135 TGGTACAGCTTCTTGTTTTGCTGAAAATAA 3 219 1 TCTTGTTTTG 0.925049 -56 GTAAAGAAGCTCTTTTCTTTCTAAGACTTA 5 36 1 TCTTTTCTTT 0.780103 -118 GTGTAAAAGATCTTGTATTGTAATCAGAAG 7 64 0 TCTTGTATTG 0.753834 -48 CTCCTAAAAATCTTGTTTTTTCTCTACTTC 11 125 1 TCTTGTTTTT 0.951704 -57 CGTATATTATCCTTTTTTTTTTTTAGCAAG 13 58 0 CCTTTTTTTT 0.744915 -43 CCAAGGAATTTCTTGATTTTCTTCTATATC 15 15 1 TCTTGATTTT 0.695347 -121 AAAATCTCGATCTTTTATTTAATAATAAAA 17 15 1 TCTTTTATTT 0.808457 -99 ATAAAATTTTTCTTGTTTTTTGTGATGTAA 17 39 1 TCTTGTTTTT 0.951704 -75 GTAATATTGCTCTTTTTTGTTATTCGGCGT 17 65 1 TCTTTTTTGT 0.744915 -49 CTGCTTACTGTCTTTTTTTCCAGTAAGATG 18 143 0 TCTTTTTTTC 0.798975 -45 AAGCATACAATCTTTTTCTTTAGAAAGGGA 19 281 1 TCTTTTTCTT 0.744915 -20 ********** Masking position 4 Map Score: 8.6162 Number of sites scoring better than the average of aligned sites = 95 Number in coding regions = 95 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 14 CTATATAAGATAACCCTAGCAGTTGA 3 259 0 AAGATAACCC 0.641143 -16 TCGAAGATGCTCCTATTTTAAAT 4 288 0 AAGATGCTCC 0.737489 -13 AAAGCCCGAAAAGCAACCCCTCTAGCAGGT 8 48 0 AAGCAACCCC 0.932047 -253 CCAATCTCATAGGCGTCCCCACATATTAGG 8 189 0 AGGCGTCCCC 0.950121 -112 AACCCTGACAAAGAGACCCCGTATATTATC 13 77 0 AAGAGACCCC 0.937921 -24 ATGAGAGAAAAAGAATCCCCTTAGAAGTTA 14 12 0 AAGAATCCCC 0.933307 -52 TAAGCTAGTAAGGGAGCCCCTTTA 14 50 1 AGGGAGCCCC 0.910144 -14 TAGTCGATTCAGGATGCCCCTACCCCTAGA 16 113 1 AGGATGCCCC 0.973565 -188 ATGGGCGGAAAGGCTTCCCTTTAGAAGGAG 16 221 1 AGGCTTCCCT 0.682728 -80 ********** Masking position 1 Map Score: 1.55729 Number of sites scoring better than the average of aligned sites = 128 Number in coding regions = 128 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 15 ********** No masking Map Score: 3.11461e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0