AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00400_ctra_reg_300.orf -o00400_ctra_300.ace -a/home/amcguire/genomes/ORF_ctra.txt -z/home/amcguire/genomes/ctra.fna -g0.41 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.41 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 flhA 181 Flagellar Secretion Protein #2 fliA 107 Sigma-28/WhiG Family #3 tyrS 158 tyrosyl tRNA Synthetase #4 trpB 300 Tryptophan Synthase (Beta Chain) #5 trpC 196 Phosphoribosylanthranilate Isomerase #6 aroA 169 Phosphoshikimate 1-carboxyl vinyltransferase #7 aroG 136 phospho-2-dehydro-3-deoxyheptonate aldolase #8 CT382.1 182 hypothetical protein #9 CT389 181 hypothetical protein #10 aspC 89 Aspartate Aminotransferase #11 minD 300 chromosome partitioning ATPase-CHLTR plasmid protein homolog GP5D #12 trpS 198 Tryptophanyl tRNA Synthetase #13 uvrB 24 Exinuclease ABC Subunit B #14 eno 161 Enolase #15 greA 113 Transcription Elongation Factor G #16 tyrB 187 Aromatic AA Aminotransferase #17 infC 300 Initiation Factor 3 Motif number 1 TGTTTAAAAATTTTATTTGATTTAGCCTTATTTTTTAGTTTGTAA 2 59 1 TTTTATTTTT 0.698129 -49 GTTGTTAATGAACAAATATTCTGTTTTAGCAGTTTT 4 2 1 TTTAAATTTT 0.876062 -299 GTGCCTGGCTTTCTTTTGAAAGCTGGCGCTTATCTACTTGGCGAT 4 136 1 TTTTAATTCT 0.951081 -165 TTAAGAGATGTTCTTATAGAAGTAAGAGCGTCTTTTTTGCGCAGG 4 209 1 TTTTAATTTT 0.968313 -92 GGAAGGCTTATTTTTATATGATTTATTTTCTATTGCTTTGATATA 5 81 1 TTTTGATTTG 0.868583 -116 ATAATTAATCTTGTTGAAAGATTTTATGTTTTTTT 6 1 0 TTTAGATTTT 0.706141 -169 TTCTATTTTTTTGTTATGAAAAGGATTTTATTTTGTTGTTATAAT 6 41 0 TTTTAATTTG 0.951081 -129 GAGGGCGTTTTTTTCATTGAAAAATCTTTCTATTTCTTTTCTCTT 7 43 1 TTTTAATTTT 0.968313 -94 AGCGAAAAAATTTTAACAAAAGTTTTTCTTTGTCTTCAATGAATT 8 45 1 TTTCAATTCT 0.725114 -138 AATTAAATTGTTTTCATTTGAATTTAATTTTATTTTTTAAGATCT 8 101 1 TTTTGATTTT 0.912194 -82 TGTTTTAGTTTTATAATAGAAACTATTGTGTTTTGTGAGAAAAT 8 149 1 TTTTAATTTG 0.951081 -34 TCGAGCGCTCTTCTCCTAAAAATCTTGTTTTTTCTCTACTTCCGA 9 113 1 TTTTAATTCT 0.951081 -69 AGGGGCTTATTTTTCGTAAAAATCCAGAGATGTCTTGCATCGATA 12 94 1 TTTTAATTCT 0.951081 -105 CGCTCCTTGCTTTTTCTTTAATTCTTAATTTATCGATGCAAGACA 12 124 0 TTTTAATTCG 0.9252 -75 TCTCGATCTTTTATTTAATAATAAAATTTTTCTTGTTTTTTGTGA 15 19 1 TTTAAATTTG 0.818084 -95 TTCTTGTTTTTTGTGATGTAATATTGCTCTTTTTTGTTATTCGGC 15 48 1 TTTTAATTTT 0.968313 -66 TGAGTCATTATTTTTATGAAAGAGCGGACCTGTTTACCAGGGGCG 17 40 1 TTTTAATTTT 0.968313 -261 CGATCGAGAGTTTTTTTGAAATAAAAAAATGTTTTGTATGAAGGT 17 83 1 TTTTAAGTTT 0.774147 -218 ** * * ** * *** Masking position 4 Map Score: 20.1136 Number of sites scoring better than the average of aligned sites = 88 Number in coding regions = 88 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 2 TCCAGAAGGAAAAAGAAAAGATTAGTTAAGA 1 16 1 AAAAGAAAGA 0.913844 -166 ACTCCGATTTAAAAAAGTAGGAGCTAAGGAA 1 117 1 AAAAAAGAGG 0.869972 -65 TTTACAAACTAAAAAATAAGGCTAAATCAAA 2 74 0 AAAAAATAGG 0.710392 -34 TATTGATAGGAAAAATACAGAGAGGATCTTC 3 23 0 AAAAATAAGA 0.70519 -136 CCTTGCTATAAAAAGAACAGGATAGATAAGA 3 105 1 AAAAGAAAGG 0.9261 -54 TTTTCATAACAAAAAAATAGAACTTATTTCC 6 64 1 AAAAAAAAGA 0.947159 -106 TTAACCTTTTTAGAAAATAGACAT 6 156 1 TAGAAAAAGA 0.790493 -14 TCTTCTCTTGAAGAGAAGAGAACGTTTAATG 7 14 0 AAGAGAAAGA 0.916679 -123 TCTTCTCTTCAAGAGAAGAGGGCGTTTTTTT 7 26 1 AAGAGAAAGG 0.928563 -111 ACACACAGGGAAGAGAAAAGAAATAGAAAGA 7 67 0 AAGAGAAAGA 0.916679 -70 GAGTTAAGAGAAGAAACAAGGAAAACAAATC 7 114 1 AAGAAACAGG 0.942681 -23 TATAAAACTAAAACAAATAGATCTTAAAAAA 8 133 0 AAACAAAAGA 0.655257 -50 GGAAGTAGAGAAAAAACAAGATTTTTAGGAG 9 125 0 AAAAAACAGA 0.930653 -57 CCCAATAATATAGAAAAGAGGTATCTGGAGA 11 150 1 TAGAAAAAGG 0.816778 -151 AGACTATTTTTAAAAAGCAGGCTTTAGGGGC 12 69 1 TAAAAAGAGG 0.57588 -130 TATTTTTCGTAAAAATCCAGAGATGTCTTGC 12 101 1 AAAAATCAGA 0.641696 -98 ATTACATCACAAAAAACAAGAAAAATTTTAT 15 39 0 AAAAAACAGA 0.930653 -75 TACGCCGAATAACAAAAAAGAGCAATATTAC 15 65 0 AACAAAAAGA 0.754728 -49 ACCCCGAGGGAAGAAACTAGGTTATCATGTT 16 87 1 AAGAAACAGG 0.942681 -101 ******* *** Masking position 9 Map Score: 18.3683 Number of sites scoring better than the average of aligned sites = 273 Number in coding regions = 273 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 3 TAATCTTTTCTTTTTCCTTCTGGAGTCCT 1 4 0 TTTTTCTGGT 0.95068 -178 AGCGCGTCGTTTTTTTGACGAGGTGTCTGCTATCGC 3 66 1 TTTTTGAGGT 0.734836 -93 TAAGAGCGTCTTTTTTGCGCAGGATTATTCTGTCGC 4 231 1 TTTTTGCGGT 0.947128 -70 TAATACTCGATTTCTTGCAAGGAAGGCTTATTTTTA 5 61 1 TTTCTGCGAG 0.824704 -136 CTATACGATTTTTCTTCCCATGGTAGTTGCTACAGT 11 49 1 TTTCTCCGGG 0.981274 -252 AAAATAGACTTTTCTACCGGAGGGATACTGTACCCA 11 118 1 TTTCTCCGGT 0.988188 -183 CTATGATCCTTTTCTACTAAGGGAATCTCCCTCCGA 14 39 1 TTTCTCTGGT 0.981296 -123 ATGGCTCCCCTTTTTAGTCCGGAAATATACGCCGAA 15 87 0 TTTTTGTGAT 0.633776 -27 GATAACCTAGTTTCTTCCCTCGGGGTATTAGCTCAG 16 77 0 TTTCTCCGGT 0.988189 -111 GGTCTACACATTTCTTCTTATGGAAGAAGGAGTGAA 17 134 1 TTTCTCTGGG 0.970467 -167 AGAAGAGGGATTTCTCCTTCTGGCCTAAACAATCTT 17 261 0 TTTCTCTGGT 0.981296 -40 ***** ** ** * Masking position 5 Map Score: 10.1067 Number of sites scoring better than the average of aligned sites = 59 Number in coding regions = 59 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 4 TAGTTAAGAATCGGAGTAGAGGGATTCGAACCC 1 38 1 TGGAGAGGGG 0.982295 -144 CTTTTTTAAATCGGAGTATAGCGCAGCCTGGTT 1 101 0 TGGAGATGCG 0.994173 -81 CAATATTCTATTGGAGAAGCGCGTCGTTTTTTT 3 49 1 TGGAGAGGCG 0.997026 -110 CGCAATCATTTTGCGGTATAGCGAAAAAATTTT 8 26 1 TGCGGATGCG 0.923909 -157 ACAAGATTTTTAGGAGAAGAGCGCTCGAGTGTC 9 108 0 TGGAGAGGCG 0.997026 -74 CTTAGTAGAAAAGGATCATAGCGAGGGATTCAA 14 27 0 AGGATATGCG 0.840908 -135 ACAGAAATTGGAGCATAGCGGGATCGAACC 16 8 1 TGGAGATGCG 0.994173 -180 AAAAGACAGTAAGCAGCAGTGCGCTATAGAGAG 16 157 1 AGCAGAGGCG 0.969938 -31 ATCCCTCTTCTTGGAGAAGGGTGGC 17 286 1 TGGAGAGGTG 0.973981 -15 * **** ** *** Masking position 8 Map Score: 14.6379 Number of sites scoring better than the average of aligned sites = 21 Number in coding regions = 21 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 5 AAGAATCTATCCATATAAACT 3 148 0 AAAATCTATC 0.747774 -11 ATGCCATGCAAATCAGCTTTTCAAGCTGATT 4 69 1 AACAGCTTTT 0.630563 -232 AGGCCTAATTAAGAAGCCTTTTATTTGATTA 4 181 1 AAAAGCCTTT 0.846277 -120 CTGGCGACAGAATAATCCTGCGCAAAAAAGA 4 239 0 AAAATCCTGC 0.891777 -62 ATCATATAAAAATAAGCCTTCCTTGCAAGAA 5 72 0 AAAAGCCTTC 0.950378 -125 AAAAAAACATAAAATCTTTCAACAAGATTA 6 10 1 TAAATCTTTC 0.891511 -160 AACAACAAAATAAAATCCTTTTCATAACAAA 6 46 1 TAAATCCTTT 0.706483 -124 TTTTTCATTGAAAAATCTTTCTATTTCTTTT 7 52 1 AAAATCTTTC 0.962398 -85 CTCTTCTCCTAAAAATCTTGTTTTTTCTCTA 9 120 1 AAAATCTTGT 0.699195 -62 TCTATAATCCTTCCTAACAATCA 12 3 1 TAAATCCTTC 0.893318 -196 CCTTCCTAACAATCATCTTTCTAAAGATGAT 12 19 1 AACATCTTTC 0.889947 -180 GATTTAGGACAACAAGCTGTCATCTTACTGG 16 123 1 AAAAGCTGTC 0.7634 -65 TTCTGGCCTAAACAATCTTTCGCATTCGCGA 17 249 0 AAAATCTTTC 0.9624 -52 ** ******** Masking position 5 Map Score: 8.20927 Number of sites scoring better than the average of aligned sites = 217 Number in coding regions = 217 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 6 AGAACTTATTTCCCTCGTATGATCTTAAAT 6 82 1 TCCCTCGTAT 0.905199 -88 GGGTACAGTATCCCTCCGGTAGAAAAGTCT 11 123 0 TCCCTCCGGT 0.974031 -178 GGAGGAAGCCTCGCTCCTTTTTAGTTGCTT 11 253 0 TCGCTCCTTT 0.937336 -48 GGAAAAAACCTCGCTCCTTGCTTTTTCTTT 12 150 0 TCGCTCCTTG 0.950636 -49 TAAGGGAATCTCCCTCCGAGCCTTCTCTTT 14 56 1 TCCCTCCGAG 0.968465 -106 TTTATCTAATTTCCTCCGATGAGCATGTAT 14 97 0 TTCCTCCGAT 0.700465 -65 TGAAAGCAGTTCGCTCGTTTTATCTAATTT 14 115 0 TCGCTCGTTT 0.885172 -47 CCTAGTTTCTTCCCTCGGGGTATTAGCTCA 16 78 0 TCCCTCGGGG 0.961341 -110 AAACTCTCGATCGCCCCTGGTAAACAGGTC 17 66 0 TCGCCCCTGG 0.876162 -235 ********** Masking position 1 Map Score: 4.98982 Number of sites scoring better than the average of aligned sites = 57 Number in coding regions = 57 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 7 TCTTTTTATAGCAAGGCAAGCGATAGCAGAC 3 90 0 GCAAGGCAGC 0.983863 -69 AAGCTGATTTGCATGGCATGCTGCAGCTATA 4 57 0 GCATGGCAGC 0.565452 -244 TCAAAAGAAAGCCAGGCACGCTGTAAGAGGA 4 124 0 GCCAGGCAGC 0.979551 -177 TCGATTTCTTGCAAGGAAGGCTTATTTTTAT 5 67 1 GCAAGGAAGC 0.988988 -130 CCAAAATGGAAGGAAGGCCCGAGTATAT 17 8 1 GGAAGGAAGC 0.971958 -293 ******** ** Masking position 8 Map Score: 4.74678 Number of sites scoring better than the average of aligned sites = 7 Number in coding regions = 7 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 8 CTGTCGCCAGTTTTTTCTATGATTTTAACACT 4 260 1 TTTTTTATGA 0.963134 -41 CCTGTGCATGTATTTTGTAAGATAGATCAAAG 5 27 1 TTTTTTAAGA 0.91613 -170 AGGAAGGCTTATTTTTATATGATTTATTTTCT 5 80 1 ATTTTTATGA 0.720046 -117 CTTGTCTTACTTTTTTCTGTGAATTTGCTTAA 5 149 1 TTTTTTGTGA 0.959627 -48 AAGTTCTATTTTTTTGTTATGAAAAGGATTTT 6 57 0 TTTTGTATGA 0.792188 -113 TTCGGAAGAGTTTTTTGCATGATATTTAAGAT 6 103 0 TTTTTCATGA 0.883521 -67 ATGTCTATTTTCTAAAAAGGTTAAAAA 6 153 0 TTTTTTAAAA 0.580187 -17 AATTTAATTTTATTTTTTAAGATCTATTTGTT 8 121 1 TTTTTTAAGA 0.91613 -62 GAAACTATTGTGTTTTGTGAGAAAAT 8 167 1 TTTTTTGAGA 0.908562 -16 TTTAGGGGCTTATTTTTCGTAAAAATCCAGAG 12 91 1 TTTTTCGTAA 0.466076 -108 AAATTTTTCTTGTTTTTTGTGATGTAATATTG 15 42 1 TTTTTTGTGA 0.959627 -72 GTAATATTGCTCTTTTTTGTTATTCGGCGTAT 15 65 1 TTTTTTGTTA 0.630377 -49 ATATGAGTCATTATTTTTATGAAAGAGCGGAC 17 37 1 TATTTTATGA 0.720044 -264 AATAAAAAAATGTTTTGTATGAAGGTTCAAAA 17 102 1 TTTTTTATGA 0.963144 -199 * **** ***** Masking position 12 Map Score: 13.0002 Number of sites scoring better than the average of aligned sites = 117 Number in coding regions = 117 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 9 TTACAGTATCTTTCTCTTGTCTAGTATA 1 164 0 TCTTTCTCTT 0.94471 -18 TATGCTAATCTTCTTGTCTTACTTTTTTCT 5 137 1 TTCTTGTCTT 0.908735 -60 ATTAAACGTTCTCTTCTCTTCAAGAGAAGA 7 15 1 CTCTTCTCTT 0.905232 -122 AAAAAACGCCCTCTTCTCTTGAAGAGAAGA 7 26 0 CTCTTCTCTT 0.905232 -111 CATTGAAAAATCTTTCTATTTCTTTTCTCT 7 57 1 TCTTTCTATT 0.703616 -80 CTTTCTATTTCTTTTCTCTTCCCTGTGTGT 7 68 1 CTTTTCTCTT 0.856487 -69 TTTTCCTTGTTTCTTCTCTTAACTCATGAA 7 109 0 TTCTTCTCTT 0.94471 -28 CAAAAGTTTTTCTTTGTCTTCAATGAATTT 8 61 1 TCTTTGTCTT 0.908735 -122 AAAATCTTGTTTTTTCTCTACTTCCGAGTT 9 131 1 TTTTTCTCTA 0.791467 -51 CTCGCTATGATCCTTTTCTACTAAGGGAAT 14 35 1 TCCTTTTCTA 0.520558 -127 CCGAGCCTTCTCTTTGTATTGCGGTCATAC 14 71 1 TCTTTGTATT 0.580441 -91 AACAAGATCCTTGTCTAGAACGGTTAA 14 145 0 TCCTTGTCTA 0.849987 -17 ********** Masking position 5 Map Score: 8.89058 Number of sites scoring better than the average of aligned sites = 330 Number in coding regions = 329 Number in noncoding regions = 1 Number of orfs with sites within 600 bp upstream = 1 Fraction of orfs with sites within 600 bp upstream = 0.000160617 Motif number 10 CTTTCTTTTGAAAGCTGGCGCTTATCTACT 4 144 1 AAAGCTGGCG 0.872636 -157 AATCATAGAAAAAACTGGCGACAGAATAAT 4 254 0 AAAACTGGCG 0.957021 -47 GAAACACGGGAGAGTCAAAATG 10 78 0 AACACGGGAG 0.937436 -12 AAAGCAACTAAAAAGGAGCGAGGCTTCCTC 11 252 1 AAAAGGAGCG 0.944298 -49 GAAATTAGATAAAACGAGCGAACTGCTTTC 14 114 1 AAAACGAGCG 0.957021 -48 TTCCGGACTAAAAAGGGGAGCCATC 15 99 1 AAAAGGGGAG 0.944298 -15 GGACCTGTTTACCAGGGGCGATCGAGAGTT 17 65 1 ACCAGGGGCG 0.927887 -236 ********** Masking position 1 Map Score: 1.61388 Number of sites scoring better than the average of aligned sites = 36 Number in coding regions = 36 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 11 CCGATTCTTAACTAATCTTTTCTTTTTCCTTCTGG 1 17 0 ACTAATTTTT 0.579553 -165 AAAAAAAATTTCTTTTACAAACTAA 2 93 0 AAAAAATTTT 0.565889 -15 TTGTTAATGAACAAATATTCTGTTTTAGCAGTTTT 4 12 1 ACAAATTTTT 0.928088 -289 AATCTTGTTGAAAGATTTTATGTTTTTTT 6 5 0 AAAGATTTTT 0.74398 -165 CATACGAGGGAAATAAGTTCTATTTTTTTGTTATG 6 68 0 AAATAATTTT 0.565926 -102 TTTTTCATTGAAAAATCTTTCTATTTCTTTTCTCT 7 52 1 AAAAATTCTT 0.735652 -85 AAAAATTTTAACAAAAGTTTTTCTTTGTCTTCAAT 8 50 1 ACAAAATTTT 0.892315 -133 CTCTTCTCCTAAAAATCTTGTTTTTTCTCTACTTC 9 120 1 AAAAATTTTT 0.932389 -62 CCATGGGAAGAAAAATCGTATAGTTAACTCGATGA 11 37 0 AAAAATTTTT 0.945354 -264 CCTGCTTTTTAAAAATAGTCTGATTCAGGGGCTAT 12 55 0 AAAAATTTTT 0.944674 -144 AAAAAACAAGAAAAATTTTATTATTAAATAAAAGA 15 25 0 AAAAATTTTT 0.908427 -89 TTTTTATTTCAAAAAAACTCTCGATCGCCCCTGGT 17 75 0 AAAAAATTAT 0.545971 -226 GAACCTTCATACAAAACATTTTTTTATTTCAAAAA 17 95 0 ACAAAATTTT 0.88663 -206 ****** * * ** Masking position 5 Map Score: 8.19495 Number of sites scoring better than the average of aligned sites = 103 Number in coding regions = 103 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 12 TTTCTTTTTCCTTCTGGAGTCCT 1 2 0 CTTTGGAGCC 0.906351 -180 AGCGCGGTTGCTTTGGGAGCAATAGGTCGGGG 1 69 0 CTTGGGAGAA 0.944724 -113 CAGAGAGGATCTTCTGGAGACAGTTA 3 5 0 CTTTGGAGCA 0.973282 -154 TGCAGCTATACTTATGTACCAAAACTGCTAAA 4 35 0 CTTTGTACAA 0.845457 -266 ACACTATAATTTTATGGAGAAAAG 4 287 1 TTTTGGAGAA 0.87766 -14 TTCGTCCATGCTTATGGACAAATCAATATAAA 11 214 1 CTTTGGACAA 0.979988 -87 CACATTTCTTCTTATGGAAGAAGGAGTGAAGT 17 140 1 CTTTGGAAAA 0.924984 -161 GGGATTTCTCCTTCTGGCCTAAACAATCTTTC 17 259 0 CTTTGGCCAA 0.928631 -42 *** ***** ** Masking position 3 Map Score: 0.916425 Number of sites scoring better than the average of aligned sites = 80 Number in coding regions = 80 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 13 AAAAATAAGGCTAAATCAAATAAAATTTTT 2 64 0 CTAAATCAAA 0.947472 -44 ACCAAAACTGCTAAAACAGAATATTTGTTC 4 20 0 CTAAAACAGA 0.903116 -281 AAGAACATCTCTTAATCAAATAAAAGGCTT 4 194 0 CTTAATCAAA 0.906247 -107 AACAAAGGGGCTAAAACCAACTATTTAAGC 5 175 0 CTAAAACCAA 0.809974 -22 TATTATAAAACTAAAACAAATAGATCTTAA 8 137 0 CTAAAACAAA 0.932672 -46 TCCTAAAATTCTTAGTCAAATCCGAAAGAA 9 75 1 CTTAGTCAAA 0.748407 -107 TACATAGCCCCTGAATCAGACTATTTTTAA 12 52 1 CTGAATCAGA 0.845389 -147 ********** Masking position 4 Map Score: 0.464724 Number of sites scoring better than the average of aligned sites = 61 Number in coding regions = 61 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 14 GAACAGGATAGATAAGATGTTGCTAGATAAG 3 119 1 GATAAGATGT 0.665224 -40 GATGTTGCTAGATAAGTTTATATGGATAGAT 3 134 1 GATAAGTTTT 0.926137 -25 GCTGTAAGAGGATGAATTTTTGAATATCTTG 4 105 0 GATGAATTTT 0.743893 -196 GTAGTCTTCGGAAGAGTTTTTTGCATGATAT 6 110 0 GAAGAGTTTT 0.873573 -60 TTTTTTCATTGAAAAATCTTTCTATTTCTTT 7 51 1 GAAAAATCTT 0.631301 -86 GCGGTATAGCGAAAAAATTTTAACAAAAGTT 8 38 1 GAAAAAATTT 0.606459 -145 GTAATATAAAGATGAGACTCTCATCTGTCCA 10 40 0 GATGAGACTT 0.902233 -50 TAGTTAACTCGATGAGATTTTAGAGCCCTGG 11 21 0 GATGAGATTT 0.907985 -280 TATTTTTAGGGATAAGTCTTTTGTAAACGGA 11 93 0 GATAAGTCTT 0.92142 -208 CCCTCCGGTAGAAAAGTCTATTTTTAGGGAT 11 111 0 GAAAAGTCTT 0.87363 -190 ATGGATAGTTGTTAAGATTTT 13 1 0 GTTAAGATTT 0.572777 -24 ********* * Masking position 5 Map Score: 2.21048 Number of sites scoring better than the average of aligned sites = 163 Number in coding regions = 163 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 15 ********** No masking Map Score: -4.70847e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0