AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00130_synecho_reg_300.orf -o00130_synecho_300.ace -a/home/amcguire/genomes/ORF_synecho.txt -z/home/amcguire/genomes/synecho.fna -g0.48 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.48 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: slr1239 26 pntA; pyridine nucleotide transhydrogenase alpha subunit. slr0930 22 hypothetical protein. slr0845 28 hypothetical protein. slr1263 27 hypothetical protein. slr1990 21 hypothetical protein. ssr0871 55 transposase. slr1521 170 hflX; GTP-binding protein HflX. slr0506 56 pcr; protochlorophyllide oxido-reductase. [EC:1.3.1.33] Input sequences: #1 slr0723 78 hypothetical protein. #2 slr0724 83 sohA; HtaR suppressor protein. #3 slr0725 300 hypothetical protein. #4 slr0738 89 trpE; probable anthranilate synthase component I. [EC:4.1.3.27] #5 slr0739 80 crtE; geranylgeranyl pyrophosphate synthase. [EC:2.5.1.29] #6 sll0696 76 hypothetical protein. #7 slr0741 86 phoU; a negative regulator of pho regulon. #8 slr0742 75 hypothetical protein. #9 slr0743 300 nusA; N utilization substance protein. #10 sll0223 141 ndhB; NADH-plastoquinone oxidoreductase chain 2. [EC:1.6.5.3] #11 sll0222 74 phoA; alkaline phosphatase. [EC:3.1.3.1] #12 sgl0002 42 bcp; hypothetical protein. #13 sml0004 164 ycf6; hypothetical protein. #14 slr0254 29 bcp; hypothetical protein. #15 sll0221 125 bcp; bacterioferritin comigratory protein. #16 sll0220 300 glmS; glucosamine--fructose-6-phosphate aminotransferase #17 slr1099 300 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase. [EC:4.1.1.-] #18 slr1291 85 ndhD2; NADH dehydrogenase subunit 4. [EC:1.6.5.3] #19 sll1200 217 hypothetical protein. #20 slr1293 56 hypothetical protein. #21 ssr2142 300 ycf19; hypothetical protein. #22 sll1191 233 hypothetical protein. #23 ssr2153 300 hypothetical protein. #24 slr2007 111 ndhD; NADH dehydrogenase subunit 4. [EC:1.6.5.3] #25 slr2008 49 hypothetical protein. #26 slr2012 247 hypothetical protein. #27 slr2013 142 hypothetical protein. #28 sll1924 300 hypothetical protein. #29 sll1733 116 ndhD; NADH dehydrogenase subunit 4. [EC:1.6.5.3] #30 sll1732 300 ndhF; NADH dehydrogenase subunit 5. [EC:1.6.5.3] #31 sll1127 200 menB; naphthoate synthase. [EC:4.1.3.36] #32 slr1241 247 hypothetical protein. #33 ssr2067 40 hypothetical protein. #34 slr1434 109 pntB; pyridine nucleotide transhydrogenase beta subunit. #35 slr1435 101 pmbA; PmbA protein. #36 slr1436 127 hypothetical protein. #37 slr1438 126 hypothetical protein. #38 sll1362 193 ileS; isoleucyl-tRNA synthetase (isoleucine--tRNA ligase) (ileRS). #39 ssr2406 37 hypothetical protein. #40 sll1360 167 dnaX; DNA polymerase III subunit. [EC:2.7.7.7] #41 slr1440 56 hypothetical protein. #42 sll1359 31 hypothetical protein. #43 sll1358 161 hypothetical protein. #44 sll1356 300 glgP; glycogen phosphorylase. [EC:2.4.1.1] #45 slr1255 176 crtB, pys; phytoene synthase. [EC:2.5.1.-] [SP:CRTB_SYNY3] #46 sll1147 157 hypothetical protein. #47 slr1256 155 ureA; urease gamma subunit (ureA amidohydrolase). [EC:3.5.1.5] #48 tRNA-Glu 219 tRNA-Glu. #49 slr1257 196 hypothetical protein. #50 slr1258 130 hypothetical protein. #51 slr1259 55 hypothetical protein. #52 slr1260 63 hypothetical protein. #53 slr1262 195 hypothetical protein. #54 sll1961 80 hypothetical protein. #55 sll1960 34 hypothetical protein. #56 sll1958 138 hisC; histidinol phosphate aminotransferase. [EC:2.6.1.9] #57 sll1957 300 arsA; arsenical resistance operon repressor. #58 sll1909 77 prmA; probable methyltransferase. [EC:2.1.1.-] [SP:PRMA_SYNY3] #59 sll1908 260 serA; phosphoglycerate dehydrogenase. [EC:1.1.1.95] #60 slr1991 40 cyaA; adenylate cyclase. [EC:4.6.1.1] #61 slr1992 209 glutathione peroxidase. [EC:1.11.1.9] #62 slr1993 101 thl; acetyl coenzyme A acetyltransferase (thiolase). #63 slr1994 60 fabG; 3-oxoacyl-[acyl-carrier protein] reductase (3-ketoacyl-acyl #64 sll1906 60 428 aa (44.5 kD) bacteriochlorophyll synthase subunit. #65 sll1905 68 sensory transduction histidine kinase. #66 slr1998 32 hypothetical protein. #67 slr1999 38 hypothetical protein. #68 slr2000 257 hypothetical protein. #69 slr2001 147 pepE; peptidase E (alpha-aspartyl dipeptidase). [EC:3.4.-.-] #70 slr2002 32 hypothetical protein. #71 sll1902 300 hypothetical protein. #72 slr0261 42 ndhH; NADH-plastoquinone oxidoreductase 49 kD subunit. [EC:1.6.5.3] #73 slr0262 50 hypothetical protein. #74 slr0263 38 hypothetical protein. #75 slr0264 99 hypothetical 41.0 kD protein slr0264. [SP:Y264_SYNY3] #76 slr0265 119 transposase. #77 ssl0461 66 hypothetical 9.5 kD protein ssl0461. [SP:Y461_SYNY3] #78 sll0249 234 hypothetical 28.9 kD protein ssl0249. [SP:Y249_SYNY3] #79 sll0248 300 isiB; flavodoxin. [SP:FLAV_SYNY3] #80 slr1519 109 hglK; HglK. #81 slr1520 167 hypothetical protein. #82 slr1522 220 transposase. #83 slr1523 300 transposase. #84 sll1220 300 potential NAD-reducing hydrogenase subunit. [EC:1.6.5.3] #85 sll0809 140 putative lipoate-protein ligase A. [EC:6.-.-.-] #86 tRNA-Gly-1 66 tRNA-Gly. #87 slr0817 68 entC; isochorismate synthase. [EC:5.4.99.6] #88 slr0818 93 hypothetical protein. #89 ssr1391 77 hypothetical protein. #90 slr0820 145 glucosyltransferase. #91 ssl1507 78 transposase. #92 sll0808 300 transposase. #93 slr1980 61 hypothetical protein. #94 sll1876 260 hemN; oxygen independent coprophorphyrinogen III oxidase. #95 sll1875 64 ho; heme oxygenase. [EC:1.14.99.3] #96 sll1874 300 AT103; AT103. #97 sll1868 152 dnaG; DNA primase. [EC:2.7.7.-] [SP:PRIM_SYNY3] #98 sll1867 240 psbA2, psba-2, slr1311, psbA3, psba-3; photosystem Q(B) protein (32 #99 sll1866 51 hypothetical protein. #100 sll1390 185 hypothetical protein. #101 sll1389 45 hypothetical protein. #102 sll1388 235 hypothetical 17.3 kD protein sll1388. [SP:YD88_SYNY3] #103 tRNA-Arg-3 130 tRNA-Arg. #104 smr0010 281 petG; PetG subunit of the cytochrome b6f complex. #105 sll1387 220 hypothetical protein. #106 sll1386 89 hypothetical protein. #107 slr1467 32 hypothetical protein. #108 slr1468 55 tymocyte protein cThy28kD. #109 slr1470 100 hypothetical protein. #110 slr1471 89 inner membrane protein. #111 slr1472 61 hypothetical protein. #112 sll1384 130 hypothetical protein. #113 sll1383 69 suhB; extragenic suppressor SuhB. #114 sll1382 71 petF; ferredoxin. #115 tRNA-Ser-2 272 tRNA-Ser. #116 sll1381 65 hypothetical protein. #117 sll1380 208 hypothetical protein. #118 tRNA-Ser-3 146 tRNA-Ser. #119 sll1378 41 hypothetical protein. [EC:3.4.21.19] #120 sll1377 168 hypothetical protein. #121 sll1376 300 hypothetical protein. #122 slr1279 71 ndhC; NADH-plastoquinone oxidoreductase chain 3. [EC:1.6.5.3] #123 slr1281 300 ndhJ; NADH-plastoquinone oxidoreductase subunit J (orf 155). #124 ssl1807 200 hypothetical protein. #125 tRNA-Lys 159 tRNA-Lys. #126 sll0945 203 glgA; glycogen synthase (starch (bacterial glycogen) synthase). #127 sll0944 145 hypothetical protein. #128 slr0320 40 hypothetical protein. #129 sll0306 300 rpoD; RNA polymerase sigma factor. #130 slr0331 178 ndhD; NADH-plastoquinone oxidoreductase chain 4. [EC:1.6.5.3] #131 slr0333 64 hypothetical protein. #132 slr0334 283 hypothetical protein. #133 ssr0536 131 hypothetical protein. #134 sll0295 290 hypothetical protein. #135 slr0335 273 apcE; phycobilisome LCM core-membrane linker polypeptide. #136 slr0337 26 hypothetical protein. #137 sll0294 35 hypothetical protein. #138 sll0293 228 hypothetical protein. #139 slr0338 73 hypothetical protein. #140 slr0168 191 hypothetical protein. #141 slr0169 227 hypothetical protein. #142 slr0171 59 ycf37; ycf37 gene product. #143 sll0176 189 hypothetical protein. #144 ssl0312 49 hypothetical protein. #145 sll0175 44 ORF1. #146 sll0174 41 hypothetical protein. #147 sll0173 61 hypothetical protein. #148 sll0172 300 hypothetical protein. #149 slr0055 143 trpG; anthranilate synthase component II. [EC:4.1.3.27] #150 slr0056 146 G4; chlorophyll synthase 33 kD subunit. #151 sll0064 300 hypothetical protein. #152 slr0492 187 menE; O-succinylbenzoic acid-CoA ligase. [EC:6.2.1.26] #153 sll0456 93 hypothetical protein. #154 sll0455 127 hom; homoserine dehydrogenase (HDH). [EC:1.1.1.3] [SP:DHOM_SYNY3] #155 slr0495 40 lipopeptide antibiotics iturin a biosynthesis protein. #156 slr0496 158 hypothetical protein. #157 sll0454 202 pheS; phenylalanyl-tRNA synthetase alpha chain (phenylalanine--tRNA #158 sll0691 135 hypothetical protein. #159 ssl1300 255 hypothetical protein. #160 sll0689 300 NaH-antiporter protein. #161 sll0602 130 hypothetical protein. [EC:3.1.3.16] #162 slr0646 300 dacB; penicillin-binding protein 4. [EC:3.4.16.4] #163 sll0829 112 rapQ; methyltransferase. [EC:2.1.1.64] #164 slr0839 71 hemH; probable ferrochelatase (protoheme ferro-lyase) (hemE #165 sll0827 266 hypothetical protein. #166 slr0841 300 hypothetical protein. #167 slr0844 151 ndhF; NADH-plastoquinone oxidoreductase chain 5. [EC:1.6.5.3] #168 ssl1533 210 hypothetical protein. #169 sll0823 166 sdhB; succinate dehydrogenase iron-sulfur protein. [EC:1.3.99.1] #170 sll0822 163 hypothetical protein. #171 slr0846 61 hypothetical protein. #172 sll0821 300 hypothetical protein. #173 slr0095 161 hisB; O-methyltransferase. [EC:2.1.1.-] #174 slr0096 29 hisB; low affinity sulfate transporter. #175 slr0498 246 hisB; hypothetical protein. #176 sll0489 286 hisB; ABC transporter. #177 sll0488 116 hypothetical protein. #178 sll0487 109 hypothetical protein. #179 sll0486 173 hypothetical protein. #180 sll0485 247 hypothetical protein. #181 sll0484 130 ABC transporter. #182 slr0502 62 cobW; CobW. #183 slr0505 121 hypothetical protein. #184 sll0481 71 hypothetical protein. [SP:Y481_SYNY3] #185 sll0480 182 hypothetical protein. #186 slr0509 131 alkaline phosphatase-like. #187 slr0510 222 hypothetical protein. #188 slr0511 300 transposase. #189 sll0027 164 ndhD; NADH dehydrogenase subunit 4. [EC:1.6.5.3] #190 sll0026 244 ndhF; NADH dehydrogenase subunit 5. [EC:1.6.5.3] #191 sll0518 170 hypothetical protein. #192 sll0517 300 rbpA; RNA binding protein. #193 slr0926 189 ubiA; 4-hydroxybenzoate-octaprenyl transferase. [EC:2.5.1.-] #194 slr0927 124 psbD2; photosystem II D2 protein. #195 sll0899 242 glmU; UDP-N-acetylglucosamine pyrophosphorylase. [EC:2.7.7.23] #196 ssr1562 65 clpP; hypothetical protein. #197 sll0897 106 dnaJ; DnaJ. #198 sll0895 300 cysQ; ammonium transport protein. #199 sll0522 139 ndhE; NADH-plastoquinone oxidoreductase chain 4l. [EC:1.6.5.3] #200 sll0521 94 ndhG; NADH-plastoquinone oxidoreductase chain 6. [EC:1.6.5.3] #201 sll0520 110 ndhI; NADH-plastoquinone oxidoreductase subunit I (frxb protein). #202 sll0519 254 ndhA; NADH-plastoquinone oxidoreductase chain 1. [EC:1.6.5.3] #203 slr1418 102 pyrD; dihydroorotate dehydrogenase. #204 slr1420 250 hypothetical protein. #205 slr1421 300 hypothetical protein. #206 sll1496 146 mannose-1-phosphate guanyltransferase. [EC:2.7.7.-] #207 sll1495 154 hypothetical protein. #208 tRNA-Val 51 tRNA-Val. #209 slr1559 126 aroE; shikimate 5-dehydrogenase. [EC:1.1.1.25] #210 slr1560 77 hiss2; probable histidyl-tRNA synthetase 2 (histidine--tRNA ligase #211 slr1562 30 probable glutaredoxin slr1562. [SP:GLR1_SYNY3] #212 slr1563 300 hypothetical protein. Motif number 1 GATTCCAAATGGCGATCGCCAGTGTGAAAG 3 272 1 GGCGATCGCC 0.499999 -29 CACGGTGCGGGGCGATCGGCTTATTTATGT 9 113 0 GGCGATCGGC 0.545537 -188 CAAAATTGTCGGCGATCGCCTACTTTGCGA 9 186 1 GGCGATCGCC 0.499999 -115 TTTATCTTACGGCGATCGGGCAAAATTTTA 13 102 0 GGCGATCGGG 0.955014 -63 CTAATGATGGCGATCGCCGTCTTGGCTA 16 9 1 GGCGATCGCC 0.499999 -292 TGCATAGTAAGGCGATCGCCAAAGTTTGGG 31 46 1 GGCGATCGCC 0.499999 -155 GCCGGCCCACGGCGATCGCCCTTTAGGGAG 38 96 1 GGCGATCGCC 0.499999 -98 AAGGTAACCGGGCGATCAACAGACAGGGGG 40 145 0 GGCGATCAAC 0.827956 -23 CTGAGAACGGCGATCAGCCTCTTGACGC 44 9 1 GGCGATCAGC 0.931245 -292 GAAACATCGGGGCGATCGCCTTTGTTCGCT 45 42 1 GGCGATCGCC 0.499999 -135 AATGGGCTACGGAGATCGGCCCAGGATACT 59 230 1 GGAGATCGGC 0.868548 -31 AATCCCCCCCGGCGATCGCCTATGAGGATC 61 93 1 GGCGATCGCC 0.499999 -117 GCCAGATGCAGGCGATCGCCAACGATGGCA 79 164 1 GGCGATCGCC 0.499999 -137 CGTTAGCAGGCGATCGCCGGGGAGACGC 81 9 1 GGCGATCGCC 0.499999 -159 CCCCTCTAATGGCGATCGGCAACCCCTAGC 98 63 1 GGCGATCGGC 0.545537 -178 CCATATTGGGGGCGATCGCCAGTTAATGCA 117 72 1 GGCGATCGCC 0.499999 -137 CTCGTTTTAAGGCGATCGCAATTTTGTTAA 134 30 0 GGCGATCGCA 0.534068 -261 AAACCAAACCGGCGATCGATAAGCATGACC 135 31 1 GGCGATCGAT 0.801563 -243 CAACATCTTTGGCGATCGCTAACCCCAGAA 141 80 1 GGCGATCGCT 0.539405 -148 ACGTTTCTTCGGCGATCGAGAGGGATAGAG 141 170 1 GGCGATCGAG 0.906847 -58 AGGCGATCACCTTGGCATAAG 146 31 0 GGCGATCACC 0.539415 -11 ATTTTAGGACGGCGATCGCCGGGGATAATT 150 11 1 GGCGATCGCC 0.499999 -136 GCAAGGATTTGGCGATCGCCTTTTTTGGTT 153 39 1 GGCGATCGCC 0.499999 -55 TTAGGTTACTGGCGATCGGCTCCCCATTCT 154 80 0 GGCGATCGGC 0.545537 -48 TTAATTGTTAGGCGATCGGG 171 1 0 GGCGATCGGG 0.955014 -61 GATGATCCTTGGCGATCGCCAGTTTGGGAA 175 110 1 GGCGATCGCC 0.499999 -137 CCATTCCTCTGGCGATCGCCAAAGCTCCAG 178 77 1 GGCGATCGCC 0.499999 -33 CTTTTATAATGGCGATCGCCCTTTAATCAC 185 157 1 GGCGATCGCC 0.499999 -26 GACCGACAACGGCGATCGCCAAAGTCAGAA 190 139 1 GGCGATCGCC 0.499999 -106 ACCATGGGTCGGCGATCGGGAGAGAAAATT 193 46 0 GGCGATCGGG 0.955014 -144 TGTTGTTCTTGGCGATCGCCTCTTCTTATT 204 14 1 GGCGATCGCC 0.499999 -237 ********** Masking position 5 Map Score: 123.939 Number of sites scoring better than the average of aligned sites = 5863 Number in coding regions = 5323 Number in noncoding regions = 540 Number of orfs with sites within 600 bp upstream = 332 Fraction of orfs with sites within 600 bp upstream = 0.0533248 Motif number 2 CCATCCGACCTAATCTCCCCACTCCCCCAT 7 54 1 TAATCTCCCC 0.94214 -33 CAAGAGGGCAAAATTCCCCCGCGTCCGTAA 11 32 0 AAATTCCCCC 0.954812 -43 ACGCCCGAGCTAATCTCCCCTGGAACCATC 13 52 0 TAATCTCCCC 0.94214 -113 AATGTAAAGAAAATTTCCCCACTGTCCTTT 19 15 0 AAATTTCCCC 0.934157 -203 CATGGTTCACAAATCTTCCCTCTGTTACGC 21 214 0 AAATCTTCCC 0.87387 -87 TAAGCTAAAAAAATTCCCGCGGTCCTGCCC 23 69 0 AAATTCCCGC 0.794937 -232 TCAGTTTGATTAATCTCCCCAGGTTATCAA 24 23 1 TAATCTCCCC 0.94214 -89 TTTGGCCGTTTAATCCCCCCTAGCCCCCCT 26 80 1 TAATCCCCCC 0.960397 -168 AAATGTTACCAAAGTCTCCCTTTTTAAACC 26 122 1 AAAGTCTCCC 0.744292 -126 AGCTAACCGCAAATTTCCCCACTGGAAAGT 26 204 0 AAATTTCCCC 0.934157 -44 TACGACTGGTTAATCTCCCCTAACCTTCCT 27 90 1 TAATCTCCCC 0.94214 -53 CTTGTTTCTATAATTTTCCCTGAAACTGGG 28 232 1 TAATTTTCCC 0.751121 -69 AACAATAACTAAATTCTCCCCTAGACCCTC 28 268 0 AAATTCTCCC 0.864072 -33 GAGGAAGTTGTAATCCTCCCGAAATCAAGC 37 54 0 TAATCCTCCC 0.879456 -73 AGTTTAATCTCCGCTTAAGTTTGT 52 5 1 TAATCTCCGC 0.749209 -59 GGGGAGGAATTAATCTTCCCTACCGTTGGC 58 39 1 TAATCTTCCC 0.830474 -39 ACAAATAAACAAATCCCCCCCGGCGATCGC 61 82 1 AAATCCCCCC 0.971669 -128 AAAAAATCTCCCCAGAATTAGGG 63 4 1 AAATCTCCCC 0.958384 -57 AAAGCCCCCCTGACCCCCCA 76 1 1 AAAGCCCCCC 0.940135 -119 AAACACAGTCAAAGTCCCCCAGTATTGAGG 76 42 1 AAAGTCCCCC 0.906322 -78 AACACTCTCTTAATTTTCCCGTTTAAC 94 8 0 TAATTTTCCC 0.751121 -253 AAGCTAGATAAAATTTCCCC 96 1 0 AAATTTCCCC 0.934157 -300 GCAACATCAAAAATTTTCCCTGGGTTTTCA 96 214 1 AAATTTTCCC 0.810188 -87 ATCCTACCAAAAATTCCCCCAGTGCTTCCC 103 46 1 AAATTCCCCC 0.954812 -85 AAACTGAGTGAAAGTCCCCCGTTATTGGCG 104 57 1 AAAGTCCCCC 0.906322 -225 ACTGTCCTGCAAATTTCCCCCTGCCCCGGC 105 190 1 AAATTTCCCC 0.934157 -31 TAGTGGGGAAAAATCCCCGCCCCCCAACCA 106 36 0 AAATCCCCGC 0.86287 -54 AAATCGGCGATAATCTCCCCTGGGTCGGTT 138 110 0 TAATCTCCCC 0.94214 -119 TACTCAACCAAAATCCTCGCCATCCCTCAC 143 95 1 AAATCCTCGC 0.654344 -95 GAACAGACCATAATTCTCCCACTTTTTTGA 143 131 0 TAATTCTCCC 0.818007 -59 TTTGGCTGTTTAATCCCCCCTAGCCCCTCT 148 106 1 TAATCCCCCC 0.960397 -195 GCGTGTTTGAAAAGCCCCCCTGGCCCCCAA 156 45 1 AAAGCCCCCC 0.940135 -114 TATAGAGTCATAATTTTCCCCTTGAATTAT 159 164 1 TAATTTTCCC 0.751121 -92 TGTGGCAGTTAAATCTCCCCCTTGTTTGAG 160 92 0 AAATCTCCCC 0.958384 -209 GGATAAGGCAAAAGCTCCCCAATTTTTAGT 160 256 0 AAAGCTCCCC 0.91338 -45 TGCAATAATCTAATTCCCCCATCATTGGGG 164 29 1 TAATTCCCCC 0.937265 -43 TTAGCCATGGAAAGCCTCCCTGGCAGAAGT 165 196 0 AAAGCCTCCC 0.825315 -71 TTCCTTCGACTAATCTTCCCTTGCTTACCA 170 112 1 TAATCTTCCC 0.830474 -52 TCCCACCGCTTAATCCCCGCCGAGTCAAAA 172 280 1 TAATCCCCGC 0.816483 -21 GTTTACTCACTAATTTCCCCTGCC 176 273 1 TAATTTCCCC 0.909351 -14 CTAAAATTGAAAAGTCCCCCTGGTTGCACA 177 85 1 AAAGTCCCCC 0.906322 -32 AATGGGGGCAAAATTTTCGCCCTGGTTTTT 178 52 0 AAATTTTCGC 0.439178 -58 AGTAAGTTTCCCCAGAATCGGG 186 3 1 TAAGTTTCCC 0.580168 -129 ATAATACAGCAAAGCCCCCCTTTGTTTGTA 195 51 0 AAAGCCCCCC 0.940135 -192 AAAAGTGAAAAAATTTCCCCGTGAATCCAC 198 23 1 AAATTTCCCC 0.934157 -278 AGATGATCACAAATTCCCGCCGTTGGCCGC 207 70 0 AAATTCCCGC 0.794937 -85 ********** Masking position 3 Map Score: 73.1251 Number of sites scoring better than the average of aligned sites = 962 Number in coding regions = 732 Number in noncoding regions = 230 Number of orfs with sites within 600 bp upstream = 190 Fraction of orfs with sites within 600 bp upstream = 0.0305172 Motif number 3 TCAAGAAATAGGGGATGGGCAAATATCTTCCA 2 27 1 GGGTGGGCAA 0.845285 -57 ACTAAATAACGGGGTTGGGCAATGGCCGGGAG 4 24 1 GGGTGGGCAA 0.845285 -66 GATACTAGGGGGATGGGGAAAGAAATCGAC 6 9 1 GGGTGGGGAA 0.929084 -68 TGATTAATGGGGGAGTGGGGAGATTAGGTCGG 7 58 0 GGGTGGGGAG 0.915829 -29 TAGCCAGCCTAGGTCTGGGGAAGGGCTAGAGC 8 40 0 AGGTGGGGAA 0.850508 -36 GGCCATGGTCAACGGTGGGCAAGGAGTGGTCA 9 242 1 AACTGGGCAA 0.492143 -59 TTTGGGCCATGGCAAAGGGCCCCAGTAATGGC 10 24 0 GGCAGGGCCC 0.520587 -118 AAAGTTTACGGACGCGGGGGAATTTTGCCCTC 11 27 1 GACGGGGGAA 0.794681 -48 GGTTTCTAGCTTTGGGGGAGAAAAAAGGG 13 8 1 AGCTGGGGGA 0.894429 -157 GACCTGCAACAACCCAGGGGCCAA 15 3 0 AACAGGGGCC 0.311998 -123 ACGTCAGCATGGCATTGGGGGATTTAGGAATT 16 117 0 GGCTGGGGGA 0.951242 -184 GGAGGAACTTGGCACAGGGGCGGACTATATCC 16 158 0 GGCAGGGGCG 0.795651 -143 CCCAGCTAATTGCCATGGGGGGCGATAGATTT 16 208 1 TGCTGGGGGG 0.812717 -93 CAGTGTCGGCGGCTGTGGGCAAAGTTTGGCAT 17 102 0 GGCTGGGCAA 0.847661 -199 CACAGCCGCCGACACTGGGCGGTTTTTCTCTA 17 117 1 GACTGGGCGG 0.730444 -184 TTAGTGAAAATAGTTGGGGGACAAAGGCTTTA 17 190 0 TAGGGGGGAC 0.36115 -111 AAGCTCCGGCAAGGTTGGGGGATTTGGACTTA 17 221 1 AAGTGGGGGA 0.769381 -80 TTAAATAAAGGGGAGTGGGGGAAT 18 3 0 GGGTGGGGGA 0.950387 -83 GGGAAAAGGACAGTGGGGAAATTTTCTTTA 19 9 1 GACTGGGGAA 0.842546 -209 AGTGGAACTGGAGGTTGGGGCCTCTAACCACC 21 247 1 GAGTGGGGCC 0.609873 -54 TCCCAAGGGGGGCTAGGGGGGATTAAACGGCC 26 83 0 GGCGGGGGGA 0.933825 -165 GAATCAAGGAAGGTTAGGGGAGATTAACCAGT 27 94 0 AGGAGGGGAG 0.756046 -49 GAATAGATGGGGGGGAGGGGGATTGTAGGAAG 28 18 1 GGGAGGGGGA 0.926278 -283 GCGATCGCCAAAGTTTGGGGCCAATCCTTTGC 31 57 1 AAGTGGGGCC 0.40436 -144 TACTTAATAATGGGGAGGGGAATATTCGTCTC 34 43 0 TGGAGGGGAA 0.6971 -67 AGATTTACCTTGGGCAGGGGAAAGTTAAGAAT 36 89 0 TGGAGGGGAA 0.6971 -39 TTTATCCAAGTGGAAAGGGCGGCACAG 37 110 1 TGGAGGGCGG 0.538204 -17 AAAGGGCGATCGCCGTGGGCCGGCCTTGGCTT 38 88 0 CGCTGGGCCG 0.459739 -106 AGTGGCTTGGGGCAGAATTGTGCAT 38 179 0 GGCGGGGCAG 0.769721 -15 GGGCGATCAACAGACAGGGGGATTCTCAGCCT 40 134 0 CAGAGGGGGA 0.633977 -34 TATTGATAACTACCAAGGGGGAATAATGGC 42 12 1 TACAGGGGGA 0.578846 -20 ATGAGCTGGCCGGTCAGGGCGGACTGTTTTTT 47 132 0 CGGAGGGCGG 0.59933 -24 AACAGATTGATGGGTAGGGCAAATTAGCTAAC 53 131 0 TGGAGGGCAA 0.489729 -65 AAAAAGATTTTGCTCTGGGGGAACAGTAACCA 59 50 1 TGCTGGGGGA 0.839361 -211 CTGATTCCCTGGGACTGGGGGGGCCAAACCAT 59 164 0 GGGTGGGGGG 0.940861 -97 CCCATTCTAGCGGCTTGGGGGATAACCGTTAG 59 204 0 CGGTGGGGGA 0.868157 -57 CATAGGCGATCGCCGGGGGGGATTTGTTTATT 61 85 0 CGCGGGGGGA 0.829081 -125 TCTTCACCCCGGCCCTGGGCACGGGGTATTTT 61 137 0 GGCTGGGCAC 0.75553 -73 AAGGTTCCCTGACCCTGGGGGCTGACTCGGAT 69 108 0 GACTGGGGGC 0.812931 -40 CAATGACTCCAGCAAGGGGGAAGAAAACCT 70 13 1 AGCGGGGGAA 0.807362 -20 CAAATTTGGGGGGTCAGGGGGGCTTT 76 5 0 GGGAGGGGGG 0.912548 -115 GTAGGAGTCCGGCTGGGGGGAGATTCTTAGAC 78 212 0 GGCGGGGGAG 0.889077 -23 GAAGTGTTGAAGGAAAGGGGACTGATGCCATC 79 187 0 AGGAGGGGAC 0.674542 -114 GGGGAAGACTGAGCAGGGGGAAGGGTAGCCAA 85 76 0 GAGGGGGGAA 0.791681 -65 GGGCAATAAACGCCAGGGGGAAGACTGAGCAG 85 92 0 CGCGGGGGAA 0.768384 -49 CCAAATTTGGAGGCCAGGGGGGTTCTTAAAAT 96 35 1 AGGAGGGGGG 0.819216 -266 TTCTAAGAGTGACGATGGGGAGAGATACTTGT 97 111 0 GACTGGGGAG 0.816314 -42 GCTCTGACTCAGGTTTGGGGACCATGGCATAT 100 97 0 AGGTGGGGAC 0.759611 -89 AGGGAAATTTAAGCGGGGGCGAGGATAATCCG 101 16 0 AAGGGGGCGA 0.501571 -30 TTCCGGCCTGAGCACAGGGGACTATGAATTTC 102 100 1 AGCAGGGGAC 0.678543 -136 TTGCATGGGAAGCACTGGGGGAATTTTTGGTA 103 50 0 AGCTGGGGGA 0.894429 -81 AAAAAATTGGGGGCCAGGGGGCTTTTAAAACA 104 21 0 GGGAGGGGGC 0.874662 -261 CAAGCGAGCCGGGGCAGGGGGAAATTTGCAGG 105 195 0 GGGAGGGGGA 0.926278 -26 CAATCCCAGATGGTTGGGGGGCGGGGATTTTT 106 26 1 TGGGGGGGGC 0.673319 -64 GGCCAAGGGGAAGGAAAGGGAA 106 78 0 GGCAGGGGAA 0.897453 -12 GGTTGCCGGGAAGACTGGGGGGCTCAATGGCT 109 43 1 AAGTGGGGGG 0.734797 -58 AAAAATTACGGGAGGGGGGCATTTCTATCCC 112 110 0 GGGGGGGGCA 0.835428 -21 TATCGTTCCAGGGCTTGGGCAGTGGGTAGGTC 115 181 0 GGGTGGGCAG 0.819412 -92 ATGGACTGAAAACTTTGGGGGAATATTTTTGT 123 211 0 AACTGGGGGA 0.772609 -90 GGCAACAGTGGGGGAAGGGGGAGCTAAAACTA 123 244 1 GGGAGGGGGA 0.926278 -57 TGTTTAATTTTGCCGTGGGCGACCGGGA 123 283 1 TGCTGGGCGA 0.685436 -18 GGCGTTGGGGCACTGGTAGGGT 127 1 1 GGCTGGGGCA 0.877267 -145 TTTGTGGTTCTAGGCTGGGGCGTTACCGCCGA 129 138 0 TAGTGGGGCG 0.385014 -163 AAGTTTATGTTAGACTGGGCGCAGATTAGTTA 132 68 0 TAGTGGGCGC 0.322752 -216 AGAAAATAAGGCAATGGGGAAAACCAAACCG 135 10 1 GGCTGGGGAA 0.930279 -264 GTCAAAAACCGACCCAGGGGAGATTATCGCCG 138 104 1 GACAGGGGAG 0.744563 -125 GCGGCGGGCTGACGGTGGGGCAGTCCCTCCTC 140 34 1 GACTGGGGCA 0.741371 -158 AACAATTAATCGCAGTGGGGAAAACTATTACC 140 73 1 CGCTGGGGAA 0.820998 -119 ATATTCAGGTAAGATGGGGCGGTGCTTTTGTG 140 144 0 AAGGGGGCGG 0.455261 -48 ATGGGCGGGAAACGATGGGCAAA 147 2 0 AACTGGGCAA 0.492143 -60 GGTTGTTATGAACGATGGGCGGGAAACGATGG 147 16 0 AACTGGGCGG 0.540603 -46 TTCCAAGAGGGGCTAGGGGGGATTAAACAGCC 148 109 0 GGCGGGGGGA 0.933825 -192 TAGCCCCTCTTGGAAAGGGGGGAACTGTGACA 148 126 1 TGGAGGGGGG 0.736475 -175 CAAGTCCAGATAGAATGGGGAGCCGATCGCCA 154 69 1 TAGTGGGGAG 0.538887 -59 CCAAACTTGGGGGCCAGGGGGGCTTTTCAAAC 156 49 0 GGGAGGGGGG 0.912548 -110 CCTGGCCCCCAAGTTTGGGGGGAAGTTAAAAA 156 63 1 AAGTGGGGGG 0.734797 -96 CTAACTCAAAAGCTCTGGGCCAAGGCAATTTG 158 58 1 AGCTGGGCCA 0.564164 -78 TCCCTACTCAAACAAGGGGGAGATTTAACTGC 160 86 1 AACGGGGGAG 0.582622 -215 TTTCACTGTAGACCAGGGGCAATGGTCAATAG 160 175 0 GACGGGGCAA 0.617455 -126 ATGGCTGCCGCAGTTGGGGCAATGGATGGTCT 162 131 0 CAGGGGGCAA 0.352655 -170 GAGATAGTCACACACAGGGCAAGCAGTTTCGG 162 203 0 CACAGGGCAA 0.334715 -98 CCATCATTGGGGGTTTGGGGACTTTCAAAAGT 164 47 1 GGGTGGGGAC 0.879177 -25 GTTAACCTTCAACCATGGGGGCAAAGCAACAA 166 30 0 AACTGGGGGC 0.653636 -271 CAAAGCATGGGACAGAGGGGAAAAGCTCTCCT 166 252 0 GACAGGGGAA 0.778258 -49 TGCTTAGCTTTGCAATGGGGGAAGTGGCAACG 168 102 1 TGCTGGGGGA 0.839361 -109 TATTACGGAAGGGCCGGGGGCAATAATTTTTA 169 104 0 GGGGGGGGCA 0.835424 -63 GGAAAAGGAAGGGGAATTGCATCAAG 173 5 1 AAGAGGGGAA 0.599443 -157 GCGGTGCGGCGACAATGGGGACAAAGAATGGG 175 56 1 GACTGGGGAC 0.74824 -191 GCGGCCGGCCGAGAAAGGGGCATAATGTGCCC 176 236 1 GAGAGGGGCA 0.648641 -51 TCCTCTGTGCAACCAGGGGGACTTTTCAATTT 177 88 0 AACGGGGGAC 0.482812 -29 CTATCCCCTAGGCGGTGGGCCGATATTAGGTG 178 14 1 GGCTGGGCCG 0.712277 -96 CGATCGCCAGAGGAATGGGGGCAAAATTTTCG 178 63 0 AGGTGGGGGC 0.822075 -47 AAGGTTCATGGGGATAGGGGGATGGGTAACTG 186 67 1 GGGAGGGGGA 0.926278 -65 TCTTTTGCTTCACGTGGGGCAACCATATACCA 187 66 1 CACGGGGCAA 0.356841 -157 TCGCCGTTGTCGGTCTGGGGGAGGTTTTATTA 190 122 0 CGGTGGGGGA 0.868157 -123 CTTTTCTGGTTACTCTGGGGGAGGAACTTTCG 192 91 1 TACTGGGGGA 0.67695 -210 TAATATCCCCAGCCGAGGGGAGAACGTGTTAC 192 149 1 AGCAGGGGAG 0.759403 -152 CGGCTAGGGCAAAAGAAAAAGG 194 1 1 CGGAGGGCAA 0.551931 -124 CCCAAATACAAACAAAGGGGGGCTTTGCTGTA 195 45 1 AACAGGGGGG 0.649225 -198 TAATTTTCTAGACTTTGGGCAACTCTAAACTT 195 115 1 GACTGGGCAA 0.690547 -128 AAATAAAATTAGGTTAGGGCGGAAGATTTTTG 199 75 0 AGGAGGGCGG 0.653945 -65 GTTTTTTCCCTACCCTGGGCAGCCCTCTAGTA 202 50 0 TACTGGGCAG 0.331709 -205 CTGGATGTCACACTTGGGGGAATAGTTACGAT 204 99 0 CACGGGGGAA 0.570897 -152 ACATCATTTCTGCGCAGGGCCAGCCTGAGTTG 205 154 1 TGCAGGGCCA 0.343669 -147 AAAAATTATTCACGAAGGGGACTATATGGCAG 205 263 0 CACAGGGGAC 0.401225 -38 TGACTATGACTGGTGGGGGGACGATCTCCCTG 206 77 0 TGGGGGGGAC 0.584996 -70 AATTTTTCCAAGGAGTGGGGCAAAA 207 140 1 AGGTGGGGCA 0.75295 -15 GGCTTTGTTTCGGCAGGGGCAAGTTTAAACAT 209 14 1 CGGGGGGCAA 0.575984 -113 GGTTTTAGGTTTGGGCGACTCTAATCAA 212 7 1 AGGTGGGCGA 0.776242 -294 *** ******* Masking position 7 Map Score: 99.6712 Number of sites scoring better than the average of aligned sites = 6106 Number in coding regions = 5424 Number in noncoding regions = 682 Number of orfs with sites within 600 bp upstream = 515 Fraction of orfs with sites within 600 bp upstream = 0.0827176 Motif number 4 GCTCTAGCCCTTCCCCAGACCTAGGCTGGCTAG 8 40 1 TTCCCAGCCA 0.770261 -36 ATCTTGAACAATGCCTGGGCCAGGAACCGTTGC 19 62 0 ATCCTGGCCG 0.783926 -156 GCGGTTAGCTAACCCCAGACCAACGCATCTCAA 26 224 1 AACCCAGCCA 0.875113 -24 AATCAACTGCAAGCCAAGGCCAATGAATGCAAT 29 26 1 AACCAAGCCA 0.895319 -91 TGGCTGATCTTATCCAGGCCCCAAAGGGGCATT 30 126 0 TACCAGGCCA 0.795931 -175 AGAGCAGATCAAGCCAAGGCCGGCCCACGGCGA 38 78 1 AACCAAGCCG 0.951188 -116 TGCACTGTAAAAACCCAGTCCTGAGCATCAGTT 43 31 1 AACCCAGCCG 0.941056 -131 TGGGAGAGCTAGTCCAAGTCCAGAAGGAACAAA 44 58 0 AGCCAAGCCG 0.936654 -243 TTTACCGTTAAACCCCAGGCCTGTTGACCGTAG 47 102 0 AACCCAGCCG 0.941056 -54 ATGGAGTTAGTATCCTGGGCCGATCTCCGTAGC 59 235 0 TACCTGGCCA 0.559435 -26 AAATACCCCGTGCCCAGGGCCGGGGTGAAGATT 61 138 1 TGCCAGGCCG 0.870849 -72 CGGAACTACTAAACCAAGCCCTACTTAACGGTT 79 218 1 AACCAAGCCA 0.895319 -83 CAAATAATCAAAACCCAGGCCAGGTAATAATTT 96 108 1 AACCCAGCCG 0.941056 -193 GACTATGAATTTCCCAGGACCAAACCAAAGATT 102 119 1 TTCCAGGCCA 0.751318 -117 GATTCTTTTTTGACCAAGGCCAATCAAAATTGA 104 158 1 TGCCAAGCCA 0.800348 -124 CTTGGATCGATTCCCTAGTCCAATATAGTCCAA 105 96 0 TTCCTAGCCA 0.571241 -125 ACCTACCCACTGCCCAAGCCCTGGAACGATAAA 115 182 1 TGCCAAGCCG 0.901316 -91 ATCGGGATTGATACCAGGACCGGAAAAACATGA 134 250 1 ATCCAGGCCG 0.917653 -41 GGTCAGTTTTAACCCCGGTCCAGAAAATCGGCG 138 131 0 AACCCGGCCG 0.921793 -98 GTTCCATGGCATTCCTAGCCCCAAGGGTGATAG 149 57 0 ATCCTAGCCA 0.683234 -87 TTGAATAGTAAAACCAAGCCCGGTCTACTCTTT 150 59 1 AACCAAGCCG 0.951188 -88 AAAGCGTGCAATTCCAAGCCCAGGAAGCTAGCA 150 92 0 ATCCAAGCCG 0.937867 -55 AGGCCTTAAAATCCCCGGCCCGGCGTAGAAACC 151 85 0 ATCCCGGCCG 0.901283 -216 TTCTTTTCCCTGCCCAAGTCCAGATAGAATGGG 154 55 1 TGCCAAGCCG 0.901316 -73 AATAATTTTTATTCCTGGTCCCGGCAAAATTCC 169 82 0 ATCCTGGCCG 0.783926 -85 AACGACCAACAACCCAAGACCCGAAAGAACAAA 172 234 0 AACCAAGCCG 0.951188 -67 GGTAAAAGCGAAACCAAGCCCAAACAGTATTAC 175 190 0 AACCAAGCCA 0.895319 -57 TGTTTGAATGTGGCCAAGACCCGATTTTAGTCT 186 34 1 TGCCAAGCCG 0.901316 -98 AAACACAATCTTACCCAGCCCAACGCCTGGAGT 198 227 1 TTCCCAGCCA 0.770261 -74 ** ***** ** * Masking position 8 Map Score: 33.9051 Number of sites scoring better than the average of aligned sites = 370 Number in coding regions = 339 Number in noncoding regions = 31 Number of orfs with sites within 600 bp upstream = 46 Fraction of orfs with sites within 600 bp upstream = 0.00738837 Motif number 5 CTACGGGTATGGGAAAAGACCGGA 6 63 1 GGGAAAAGAG 0.470379 -14 AAGTTGCCGAGGCCAAACCTCAGCAGTTGCCC 27 55 1 GGCCAAACCA 0.878654 -88 GGCAAAACTAGATGATAGACAA 34 1 1 GGCAAAACTA 0.702236 -109 TTGTCTTGATGGCCAAAGCCCAGAAGTATAAG 36 47 0 GGCCAAAGCA 0.872117 -81 GACACTATAAGGGAAAGGCACAGCATTA 44 283 1 GGGAAAGGCA 0.891032 -18 GGACTGGGGGGGCCAAACCATAGGGAGTTTTC 59 153 0 GGCCAAACCA 0.878654 -108 GTGATCAGCCGGCAAAAGCTTAGGTTAC 78 7 0 GGCAAAAGCA 0.938631 -228 TACCATCTACGGCCAAACCCAACGGCTTAAAA 81 76 0 GGCCAAACCA 0.878654 -92 ACTCTATTGGGGGAAAGGAACATTACCCGACA 83 137 0 GGGAAAGGAA 0.757053 -164 TTTATCTTTTGGCAAAGCTCGAGAACTTGCCC 83 192 0 GGCAAAGCTA 0.6587 -109 GTCAAATTAGGGCAAAAGCTAAACACCGTTGG 117 176 0 GGCAAAAGCA 0.938631 -33 GGAAGGGCTTGGCAAAAGCAAAATTCTAAGGG 124 71 0 GGCAAAAGCA 0.938631 -130 TTCTAAAATCGGCAAAACCCAACTGCACCAAA 132 222 1 GGCAAAACCA 0.941994 -62 GAAAGCCGTTGGCAAAACTTTACTTTTTTTCT 133 65 0 GGCAAAACTA 0.702236 -67 AAAGCCGCCCGGCCAAGGCTTATTTAAAGGTT 134 64 1 GGCCAAGGCA 0.848044 -227 TAAGGCAATGGGGAAAACCAAACCGGCGATCG 135 17 1 GGGAAAACCA 0.913862 -257 GACTTGGGCAGGGAAAAGAATACTGAAACTCT 154 43 0 GGGAAAAGAA 0.792006 -85 AGCCTCTAATGGCAAAGGCAAAAACAATTGGG 165 107 0 GGCAAAGGCA 0.926017 -160 CAACCATGGGGGCAAAGCAACAAGCCCTCCAA 166 21 0 GGCAAAGCAA 0.835106 -280 TTAGACTTATGGGAAAGGAAGATAAAATTTAA 172 80 0 GGGAAAGGAA 0.757053 -221 ATGGCTGCAAGGGCAAACCTTAAAATTTTGAT 172 150 0 GGGCAAACCA 0.825493 -151 GGGGAAAAGATTGGTGAAATTGA 176 2 1 GGGAAAAGAG 0.470379 -285 ACCCCAGAGAGGCAAAGGCATAGCATTAAACT 180 181 1 GGCAAAGGCA 0.926017 -67 TTTTGTCGAGGGGAAAACCACGGCTAAACTTA 181 65 0 GGGAAAACCG 0.71219 -66 CCCAACAACGGGCAAAACCATGGGTCGGCGAT 193 60 0 GGCAAAACCG 0.791134 -130 CGGCTAGGGCAAAAGAAAAAGGAGAGCTG 194 8 1 GGCAAAAGAA 0.853558 -117 AGTCACCGTTGGCAAAACCTTAACAAAAAGTT 195 142 0 GGCAAAACCA 0.941994 -101 ATCGTGATTGGGGCAAGGCAAATTCAGGGGGA 195 186 0 GGGCAAGGCA 0.784758 -57 CGGTTAATTGGGCAAAACTTAAGCAAAAATCT 199 52 1 GGCAAAACTA 0.702236 -88 GTGACATCCAGGCAAAGCAGGAACAGAAGCGC 204 120 1 GGCAAAGCAA 0.835106 -131 TTGGGGTTGCGGGAAAACATTATATTGAGAAT 209 44 0 GGGAAAACAA 0.801706 -83 TGCTGAAGGGAAAGGACAAAGACAACCCC 210 59 0 GGGAAAGGAA 0.757053 -19 AGGGGAAAACAGGACAGGGACAAA 211 3 1 GGGAAAACAA 0.801706 -28 ********* * Masking position 6 Map Score: 32.5936 Number of sites scoring better than the average of aligned sites = 362 Number in coding regions = 307 Number in noncoding regions = 55 Number of orfs with sites within 600 bp upstream = 61 Fraction of orfs with sites within 600 bp upstream = 0.00979762 Motif number 6 CACTCCTTGCCCACCGTTGACCATGGCCCCT 9 239 0 CCACCGTTGC 0.865806 -62 AAACCTGGATTTCCCGTTGTTTAAGAGTCTT 12 15 1 TTCCCGTTGT 0.735226 -28 GCTATCGATATCACCATTGCCACT 20 4 0 TCACCATTGC 0.714437 -53 ACTCTTGCTGCCACCGTTGTCGCCGTGGCTG 22 175 1 CCACCGTTGC 0.865806 -59 GGGTTAGAAGTCCCCATTGAGGTCAGCTAA 34 90 1 TCCCCATTGG 0.815851 -20 TAAAATTTGGTTACCATTGCTAACTTTTGTA 44 242 0 TTACCATTGT 0.39909 -59 ATCGGGGCGATCGCCTTTGTTCGCTACACTG 45 47 1 TCGCCTTTGT 0.587292 -130 AGTGTCGATTTCCCCATTGATTGTAGTTCTT 53 71 1 TCCCCATTGT 0.787918 -125 GAATTGATACTTACCATTGATTAACAGATTG 53 154 0 TTACCATTGT 0.39909 -42 TTAATTCCTCCCCCCATTGACTTGGACCCTT 58 21 0 CCCCCATTGC 0.927468 -57 TTAATCTTCCCTACCGTTGGCGCACATAAGG 58 48 1 CTACCGTTGC 0.768525 -30 AATTTTCACTCTCCCATTGCCTAAAAAATTA 79 43 1 CTCCCATTGC 0.868076 -258 GTTTGTGCTGTTGCCATTGTCTTTTGCGGCA 79 92 1 TTGCCATTGC 0.767364 -209 CAGGAGAACTTTCCCGTTGGCTACCCTTCCC 85 60 1 TTCCCGTTGC 0.84333 -81 TATGGGTAGTCCGCCGTTGCGTTTCAGTCTA 87 12 0 CCGCCGTTGG 0.910467 -57 CTATTTTGCCCCGCCATTGTTGCGAGATTAT 87 45 1 CCGCCATTGT 0.854462 -24 CAATGAACGATCGCCGTTGCGTTCAATCTAA 89 30 1 TCGCCGTTGG 0.851354 -48 GGTTTTATGTCTGCCATTGTTATAGACTGTC 105 165 1 CTGCCATTGT 0.75132 -56 CCTAATTTGACTGCCTTTGACT 117 197 1 CTGCCTTTGC 0.715941 -12 GCAATTTCTACTCCCTTTGATGCGGAGGATA 118 71 0 CTCCCTTTGT 0.593627 -76 GGGGTAGTCCCTCCCGTTGCTGATCTCACCC 127 29 0 CTCCCGTTGT 0.831374 -117 GGTTTGGTTTTCCCCATTGCCTTATTTTCT 135 10 0 TCCCCATTGC 0.878076 -264 AACCAAGTTACCCCCATTGTTCCATGGCATT 149 77 0 CCCCCATTGT 0.868358 -67 AATTTTCCTCCCGTTGCCTTTCCTTTCT 154 110 0 CTCCCGTTGC 0.905279 -18 AGAGAAAAAACCGCCATTGTTTGCAAAATTG 161 24 0 CCGCCATTGT 0.854462 -107 CCCCATGATTTTACCATTGGGAATTTCTTGC 165 53 1 TTACCATTGG 0.441964 -214 CCAATTGTTTTTGCCTTTGCCATTAGAGGCT 165 108 1 TTGCCTTTGC 0.586695 -159 CTCCATAATGCCGCCTTTGTGTTGGGAACAG 166 135 1 CCGCCTTTGG 0.75081 -166 CTCCGGTTCACCGCCGTTGGGGAATGGAGGC 166 223 0 CCGCCGTTGG 0.910467 -78 TTTTGCCTTGTTGCCGTTGCCACTTCCCCCA 168 117 0 TTGCCGTTGC 0.827318 -94 CTCCTACAATTCCCCATTGATCTATGGAATT 169 57 1 TCCCCATTGT 0.787918 -110 CCATTCTTTGTCCCCATTGTCGCCGCACCGC 175 56 0 TCCCCATTGC 0.878076 -191 GGTTTCGCTTTTACCATTGTGCCAAGGGATG 175 208 1 TTACCATTGG 0.441964 -39 AGAGCTAGAGCTACCTTTGGGAGGGATT 184 8 0 CTACCTTTGG 0.377008 -64 ATCAATACTGCTCCCGTTGGTTTAATCATGG 185 74 0 CTCCCGTTGT 0.831374 -109 CCCATTTTGACCCCCATTGCGGTTTTTCCAG 190 31 0 CCCCCATTGG 0.887212 -214 ACTTTGGCGATCGCCGTTGTCGGTCTGGGGG 190 133 0 TCGCCGTTGC 0.903009 -112 ACAGCAAAGCCCCCCTTTGTTTGTATTTGGG 195 45 0 CCCCCTTTGT 0.739496 -198 TACCAGCCAGTCACCGTTGGCAAAACCTTAA 195 151 0 TCACCGTTGC 0.784195 -92 GTCCTGATCGTCGCCATTGAGTATATCGTGA 195 211 0 TCGCCATTGG 0.797704 -32 TTGTCTTGTTCTGCCTTTGTCTGGGCTACCA 198 113 1 CTGCCTTTGC 0.715941 -188 TACCATCTGACCCCCGTTGTGGTCGCTTAAT 205 95 0 CCCCCGTTGG 0.919519 -206 TCACAAATTCCCGCCGTTGGCCGCAAATCCT 207 63 0 CCGCCGTTGC 0.942956 -92 ATGCCATATCTTCCCGTTGCTGGTAATTCCA 212 206 0 TTCCCGTTGT 0.735226 -95 ********* * Masking position 7 Map Score: 44.0169 Number of sites scoring better than the average of aligned sites = 1237 Number in coding regions = 1105 Number in noncoding regions = 132 Number of orfs with sites within 600 bp upstream = 145 Fraction of orfs with sites within 600 bp upstream = 0.0232894 Motif number 7 GACAATGATGGTTCCAGGGGAGATTAGCTCG 13 46 1 GTTCCGGGGA 0.799512 -119 TGTTCCACAGCTTTTTGGGGACAGCAGGCTG 15 43 0 CTTTTGGGGA 0.813937 -83 TCCAAATCCTATTCAAGGGGGATTTAAGTTG 19 190 0 ATTCAGGGGG 0.812017 -28 GGGTTTTAAACTTCTTGGGGAATTGTTTGGG 48 143 1 CTTCTGGGGA 0.798879 -77 TCGATGGTTCGTTCTGGGGGGTGATGACGG 55 15 1 GTTCTGGGGG 0.829562 -20 GAAAATTTTACTTTTTGGGGGCAAGAATTTG 57 76 1 CTTTTGGGGG 0.772562 -225 CCTCCAGCTCAATTATGGGGATTAATTTGGC 61 19 1 AATTAGGGGA 0.714831 -191 TCTCCTCCCTAATTCTGGGGAGATTTTTT 63 9 0 AATTCGGGGA 0.673076 -52 TGACCCCCCAAATTTGGGGGGAAACACAGTC 76 21 1 AATTTGGGGG 0.715329 -99 AGTATTGAGGGATTTAGGGGGCAAAATAAGA 76 62 1 GATTTGGGGG 0.686835 -58 GGGATAATTTTTGGGGATGCAAACTGA 88 77 0 ATTTTGGGGA 0.887756 -17 TGCTTGCGATATTTTCGGGGAGTGGCATCTA 120 95 0 ATTTTGGGGA 0.887756 -74 TTTAAGTGGGATTTAGGGGGATAAATACCTA 148 170 1 ATTTAGGGGA 0.859678 -131 CTTGGTAAATGTTCCCGGGGATTATGCCGTT 151 165 1 GTTCCGGGGA 0.799512 -136 AAATTAATTTATTTCTGGGGAGTGT 153 79 1 ATTTCGGGGA 0.834213 -15 TTAATGAGGAGATTTAGGGGACAAAATAAAA 156 122 1 GATTTGGGGA 0.738526 -37 CAAAGGCCTTGTTTATGGGGATGGATCAAAT 157 150 0 GTTTAGGGGA 0.84245 -53 CCCTGATAAGCTTTTCGGGGATTCTTACTTT 159 67 1 CTTTTGGGGA 0.813937 -189 GGGAGCGATAATTCAAGGGGAAAATTATGAC 159 170 0 ATTCAGGGGA 0.847629 -86 GCTTGGTGAGAATTTGGGGGGCTTGGATCAG 162 100 0 AATTTGGGGG 0.715329 -201 CCAATGGTAAAATCATGGGGGTATAGATATC 165 42 0 AATCAGGGGG 0.638651 -225 AGCTTAGCCCCTTTTTGGGGGGAGACAATGC 167 97 1 CTTTTGGGGG 0.772562 -55 TGGGGATAAAATTTAAGGGGGACATCCTCCT 169 31 1 ATTTAGGGGG 0.826304 -136 CAAACATCCCGATTCTGGGGAAACTTACT 186 9 0 GATTCGGGGA 0.642467 -123 TTAGTCTAAGGTTCATGGGGATAGGGGGATG 186 60 1 GTTCAGGGGA 0.829216 -72 GGCAAGGCAAATTCAGGGGGAAAACTACCAG 195 176 0 ATTCAGGGGA 0.847629 -67 TCCACAGTGGATTCACGGGGAAATTTTTTCA 198 28 0 ATTCAGGGGA 0.847629 -273 CCACAAAGGGATTTTCGGGGAACAAGTTTA 207 10 0 ATTTTGGGGA 0.887756 -145 ***** ***** Masking position 3 Map Score: 21.9793 Number of sites scoring better than the average of aligned sites = 405 Number in coding regions = 313 Number in noncoding regions = 92 Number of orfs with sites within 600 bp upstream = 97 Fraction of orfs with sites within 600 bp upstream = 0.0155798 Motif number 8 GGAAAAAATGGGTTTAAAAGCCTGATGTTA 25 6 1 AGGTTAAAAG 0.826386 -44 CCATTGTTAGAGCGTGTTTCAAAAGTCGAGTTTTG 26 49 1 AGTTTAAAAG 0.950156 -199 CTCACTAAGGCTCCGGTTTAAAAAGGGAGACTTTG 26 131 0 CGTTTAAAAG 0.707388 -117 TCCCCACTGGAAAGTGTTTGAAAAGTGCAAGGCTA 26 184 0 AGTTTAAAAG 0.950156 -64 GAAGCCAACCAGATAGTTCTAAAAGCTTTTCAAAT 32 138 1 AGTTCAAAAG 0.707388 -110 CGAGACGGCCAGATGGGTTAAAAAGTGTCGATTTC 53 48 1 AGGTTAAAAG 0.826386 -148 CCGTTCTAAGAGCGTGTTTGAAAAGTAGGGTGAAG 75 52 0 AGTTTAAAAG 0.950156 -48 ACTTTCTAAGAGCCTGTTTGCAAAGTCTTATTTTG 76 83 0 AGTTTCAAAG 0.707388 -37 AGGCTCTTAGAAAGTGTTTGAAAAGTT 76 103 1 AGTTTAAAAG 0.950156 -17 CCTGAGAGCCTGTTTTAAAAGCCCCCTGGCC 104 7 1 AGTTTAAAAG 0.950156 -275 AATTAAATCTGGTTTGAAAAGGTTGGAAGTG 107 7 1 AGTTTAAAAG 0.950156 -26 TTGCCCCGAGAAAGCGTTTAAAAAGTTGAGTTTTG 148 75 1 AGTTTAAAAG 0.950156 -226 TTCCTCTCAGAACGTGTTTGAAAAGCGCAAGACTA 148 199 0 AGTTTAAAAG 0.950156 -102 TAACTCTCAGAGCGTGTTTGAAAAGCCCCCCTGGC 156 34 1 AGTTTAAAAG 0.950156 -125 GAATCTGTTTGAAAAGTTTTATTTTG 156 143 0 AGTTTAAAAG 0.950156 -16 TTTTTGTAAGAAAGTGTTTGAAAAGTT 188 284 1 AGTTTAAAAG 0.950156 -17 * **** ***** Masking position 8 Map Score: 18.0485 Number of sites scoring better than the average of aligned sites = 112 Number in coding regions = 12 Number in noncoding regions = 100 Number of orfs with sites within 600 bp upstream = 62 Fraction of orfs with sites within 600 bp upstream = 0.00995824 Motif number 9 CCCGAGCTAATCTCCCCTGGAACCATCATT 13 49 0 TCTCCCCTGG 0.895442 -116 AATACTCCCCTTTACCCTGGGTTGTCATAG 21 109 1 TTTACCCTGG 0.320608 -192 TTTTTTTAGCTTACCCCTGGAGTAATTAGA 23 86 1 TTACCCCTGG 0.351847 -215 GTGAAGGAGATTTTCCCTCGCCTGCCCTTA 23 182 1 TTTTCCCTCG 0.441858 -119 GTTTGATTAATCTCCCCAGGTTATCAAATG 24 26 1 TCTCCCCAGG 0.611654 -86 GACTGGTTAATCTCCCCTAACCTTCCTTGA 27 93 1 TCTCCCCTAA 0.17484 -50 GTTTCTATAATTTTCCCTGAAACTGGGGTT 28 235 1 TTTTCCCTGA 0.470623 -66 ATAACTAAATTCTCCCCTAGACCCTCTCAA 28 264 0 TCTCCCCTAG 0.567937 -37 AGTATTCAGCTCTCCCCTAGGGTTAGAAGT 34 71 1 TCTCCCCTAG 0.567937 -39 TATTCTTAACTTTCCCCTGCCCAAGGTAAA 36 88 1 TTTCCCCTGC 0.914505 -40 TCTGTCCGTATTTTCCCTGATAATTAAAAG 50 82 0 TTTTCCCTGA 0.470623 -49 TTGCCCGTTCTTTGCCCTGCTTCATCATCC 53 11 0 TTTGCCCTGC 0.344782 -185 AAGGGCATTCTTTCCCCTGTTTTTTCCTAG 56 76 1 TTTCCCCTGT 0.361184 -63 TTTGGCTACATTTCCCCAGCATCTAACCCA 57 103 1 TTTCCCCAGC 0.662986 -198 GAGGAATTAATCTTCCCTACCGTTGGCGCA 58 42 1 TCTTCCCTAC 0.277261 -36 CCATAGGGAGTTTTCCCTAGAAAGCCTAGA 59 138 0 TTTTCCCTAG 0.458438 -123 AAAAAATCTCCCCAGAATTAGGGAGG 63 7 1 TCTCCCCAGA 0.202479 -54 TTTATCTGTTTTTTCCCTGGGCACC 80 6 0 TTTTCCCTGG 0.846512 -104 ATCAACAGCGTCTCCCCGGCGATCGCCTGC 81 16 0 TCTCCCCGGC 0.267192 -152 TTGGCTACCCTTCCCCCTGCTCAGTCTTCC 85 76 1 TTCCCCCTGC 0.618707 -65 CTGCTCAGTCTTCCCCCTGGCGTTTATTGC 85 92 1 TTCCCCCTGG 0.683221 -49 CCGTTGTCCCTGGGGGGCGCAAT 89 4 1 TTGTCCCTGG 0.455526 -74 TTGCAAAATATTTTCCCAGCGATGAAAACA 94 176 1 TTTTCCCAGC 0.432821 -85 ACATCAAAAATTTTCCCTGGGTTTTCACCC 96 217 1 TTTTCCCTGG 0.846512 -84 CCATCCATCCTTTTCCCAACTGTTGGCGGT 105 138 1 TTTTCCCAAC 0.104848 -83 TCCTGCAAATTTCCCCCTGCCCCGGCTCGC 105 194 1 TTCCCCCTGC 0.618707 -27 ACGGCAAGGATTTTCCCTGGATAGATGCCA 120 74 1 TTTTCCCTGG 0.846512 -95 CCGGGCGGCTTTTTCCCTCGTTTTAAGGCG 134 46 0 TTTTCCCTCG 0.441858 -245 TCGGCGATAATCTCCCCTGGGTCGGTTTTT 138 107 0 TCTCCCCTGG 0.895442 -122 TTCAGTATTCTTTTCCCTGCCCAAGTCCAG 154 48 1 TTTTCCCTGC 0.8058 -80 GAGTCATAATTTTCCCCTTGAATTATCGCT 159 168 1 TTTCCCCTTG 0.281129 -88 CTATTGACCATTGCCCCTGGTCTACAGTGA 160 175 1 TTGCCCCTGG 0.683221 -126 GAAACCTTATTTTTCCCTGCAATGGTGAGC 165 145 1 TTTTCCCTGC 0.8058 -122 TACTCACTAATTTCCCCTGCC 176 276 1 TTTCCCCTGC 0.914505 -11 TAGCCGTGGTTTTCCCCTCGACAAAAGGTC 181 71 1 TTTCCCCTCG 0.671142 -60 CCCATTGCCATTTCCCCTGGGGCGAGGGGT 185 120 1 TTTCCCCTGG 0.934287 -63 AGTAAGTTTCCCCAGAATCGGGATGT 186 7 1 TTTCCCCAGA 0.296512 -125 AGTAACACGTTCTCCCCTCGGCTGGGGATA 192 152 0 TCTCCCCTCG 0.551429 -149 CCCTAGGGTTTTTTCCCTACCCTGGGCAGC 202 59 0 TTTTCCCTAC 0.38908 -196 ATGTTTAAACTTGCCCCTGCCGAAACAAAG 209 16 0 TTGCCCCTGC 0.618707 -111 GGCATCATCCTCTCCCCTGCTCTGGCTGGG 212 162 1 TCTCCCCTGC 0.865649 -139 ********** Masking position 1 Map Score: 35.1276 Number of sites scoring better than the average of aligned sites = 1556 Number in coding regions = 1367 Number in noncoding regions = 189 Number of orfs with sites within 600 bp upstream = 229 Fraction of orfs with sites within 600 bp upstream = 0.0367812 Motif number 10 TGCCGCTCCCGGCCATTGCCCAACCCCGTT 4 31 0 GGCCATTGCC 0.810304 -59 GGTATCCAGGGGCCATGGTCAACGGTGGGC 9 232 1 GGCCATGGTC 0.749131 -69 TGGGGCCCTTTGCCATGGCCCAAAACCAGG 10 32 1 TGCCATGGCC 0.844574 -110 CCCTGATGTCTGCCATAGCCAAGACGGCGA 16 24 0 TGCCATAGCC 0.811637 -277 GGGCAAAGTTTGGCATTGCCGCCAGAAAAG 17 88 0 TGGCATTGCC 0.845258 -213 GAGTTGATTGAGCCATAGCCCAAGGGCTTG 37 29 1 AGCCATAGCC 0.467686 -98 CATGGAGATATGCCATGGCCAAACTGCCAA 56 11 0 TGCCATGGCC 0.844574 -128 CAAAAACTCTTGGCATGGACTTTTTTTCTT 68 70 0 TGGCATGGAC 0.309718 -188 CCATGGTTACTGCCATGGTCAAAGCTAGTT 68 184 1 TGCCATGGTC 0.905651 -74 TTTGTGCTGTTGCCATTGTCTTTTGCGGCA 79 93 1 TGCCATTGTC 0.847057 -208 TACTATTGGGGGGCATTGCC 88 1 0 GGGCATTGCC 0.770813 -93 AGTAGATATATGCCATGGTCCCCAAACCTG 100 90 1 TGCCATGGTC 0.905651 -96 AATTTTGATTGGCCTTGGTCAAAAAAGAAT 104 159 0 GGCCTTGGTC 0.685897 -123 TGCCGGCCGGTGGCATGGCCTAAGTATTCC 126 28 0 TGGCATGGCC 0.904479 -176 CCTTTAAATAAGCCTTGGCCGGGCGGCTTT 134 64 0 AGCCTTGGCC 0.732742 -227 GCATAGCCAATGGCATTGCCCTAAAAATTA 135 71 1 TGGCATTGCC 0.845258 -203 TGGCCGTCGGGGCCGTTGCCTATTTTGTCG 141 52 0 GGCCGTTGCC 0.729361 -176 GTCTTTCCTCGGCCATGGTCAAGGCCAACA 157 79 0 GGCCATGGTC 0.749131 -124 AATACCAAATTGCCTTGGCCCAGAGCTTTT 158 65 0 TGCCTTGGCC 0.929548 -71 CAATTGTTTTTGCCTTTGCCATTAGAGGCT 165 109 1 TGCCTTTGCC 0.885655 -158 TTTGCCTTGTTGCCGTTGCCACTTCCCCCA 168 117 0 TGCCGTTGCC 0.814342 -94 TTCTGAAAAAAGCCATTGCCACTCAATTTC 176 26 0 AGCCATTGCC 0.810663 -261 TTTAATGCTATGCCTTTGCCTCTCTGGGGT 180 181 0 TGCCTTTGCC 0.885655 -67 TGTCTTGTTCTGCCTTTGTCTGGGCTACCA 198 114 1 TGCCTTTGTC 0.668768 -187 TGAATTGCAATGCCATGGCGACAGCAGGTT 205 37 0 TGCCATGGCG 0.644125 -264 ********** Masking position 6 Map Score: 26.7579 Number of sites scoring better than the average of aligned sites = 1106 Number in coding regions = 1024 Number in noncoding regions = 82 Number of orfs with sites within 600 bp upstream = 92 Fraction of orfs with sites within 600 bp upstream = 0.0147767 Motif number 11 CGAGTCTCAACTTTGGTAATACTCCCCTTTACC 21 92 1 CTTGGTAAAT 0.852495 -209 TTTGCCTCCACACTGGCAAAAATTGTCAAAAAA 23 142 1 CCTGGCAAAT 0.933447 -159 AAAAGGGAGACTTTGGTAACATTTCCTCCCTTC 26 113 0 CTTGGTAAAT 0.852495 -135 TTTGATTTTCCATTGGCAAGATTTACCTTCATC 29 68 1 CTTGGCAAAT 0.948199 -49 ACCCTGGTAAAACTTATAATACCG 49 183 0 CCTGGTAAAT 0.815784 -14 AGAGTAACAGCCTTGGTAAAATTTTCAGATAA 50 109 1 CTTGGTAAAT 0.852495 -22 TCTTCGGTTACTTTGGCAAAATTGCCGGGGACA 53 98 1 CTTGGCAAAT 0.948199 -98 AGTTCATTGACACTGGCAATAATTAATGTTGCT 78 54 1 CCTGGCAAAT 0.933447 -181 ACATATTCCGCTGGTAATAATAATTTTGAAT 99 9 1 CCTGGTAAAT 0.815784 -43 TTCCCGGCAACCTTGGCAATATTTATCTAGAGA 109 22 0 CTTGGCAAAT 0.948199 -79 GTTTTCAGTCCATTGGCAACAGTGGGGGAAGGG 123 230 1 CTTGGCAAAT 0.948199 -71 GTTGTGCTTCATTGGCACGATTTATAACGTTA 125 138 0 CTTGGCACAT 0.65998 -22 CCCAGTAAAGCTCAGGCAATACTATGGGTATTT 133 23 0 CCAGGCAAAT 0.614677 -109 TCTAGAAAGCCGTTGGCAAAACTTTACTTTTTT 133 68 0 CTTGGCAAAT 0.948199 -64 AGGCGATCACCTTGGCATAAGTGATGAGCAGC 146 20 0 CTTGGCATAT 0.567026 -22 TGGAAAGCCTCCCTGGCAGAAGTTTTGGGAGAT 165 186 0 CCTGGCAGAT 0.73241 -81 TGGCTTATCCCTTTGGCAACCATGGCTGCAAGG 172 170 0 CTTGGCAACT 0.625152 -131 TCAACCATTGGTAAAACTGAATTTTGCT 183 104 0 CTTGGTAAAT 0.852495 -18 AGCCAGTCACCGTTGGCAAAACCTTAACAAAAA 195 145 0 CTTGGCAAAC 0.625152 -98 TCCCATTGGTCATTGGCAGTAATATCGCTCAAA 198 170 0 CTTGGCAGAT 0.781282 -131 TTGCCCCACTCCTTGGAAAAATTACCAGCTAAT 207 130 0 CTTGGAAAAT 0.508772 -25 CGTTGCAGTTCCCAGGTAAAATTTCCAGTTCCA 210 27 0 CCAGGTAAAT 0.334962 -51 * ******* * * Masking position 8 Map Score: 20.3971 Number of sites scoring better than the average of aligned sites = 99 Number in coding regions = 81 Number in noncoding regions = 18 Number of orfs with sites within 600 bp upstream = 17 Fraction of orfs with sites within 600 bp upstream = 0.00273049 Motif number 12 ATAGCAATGAACAATTTCTCCCCATCTTAACCC 20 30 1 ACATTTCCCC 0.89113 -27 ACCATGGTTCACAAATCTTCCCTCTGTTACGCC 21 213 0 ACAATTCCCT 0.358576 -88 TGTTGTAATCAAATTTTTTCCCCGTTTTCGGTA 26 16 0 AAATTTCCCC 0.896451 -232 GACTTTGGTAACATTTCCTCCCTTCCCAAGGGG 26 105 0 ACATTTCCCT 0.699783 -143 AAGCAAAGCTAAAAATAATCCCCAAGGCCTCAG 32 182 0 AAAATTCCCC 0.674933 -66 GGGAGGATTACAACTTCCTCCCTTAAATTGGGA 37 64 1 CAATTTCCCT 0.613275 -63 ATTCCTATGCACAATTCTGCCCCAAGCCACT 38 173 1 ACATTGCCCC 0.889081 -21 AGGATTTAGCCTACTTATTCCCCATTTTAAGGG 44 133 1 CTATTTCCCC 0.399824 -168 CCATGTCGTCCCAATCCATCCCTAAAAAATAGC 56 36 1 CCATCTCCCT 0.365303 -103 AAATGTAGCCAAATTCTTGCCCCCAAAAAGTAA 57 83 0 AAATCGCCCC 0.764944 -218 CCCCGCTTGCCAAATTAATCCCCATAATTGAGC 61 25 0 CAATTTCCCC 0.847765 -185 CAAGATCTCCACAATTAGTCCCTTTAGTTCACA 62 72 0 ACATTTCCCT 0.699783 -30 TCTTCACACCAAAATCATTCCCTGTTGTCA 67 8 0 AAATCTCCCT 0.486217 -31 GTTGGCCCAGTTTAGCCCCGGTTTGCTCT 77 7 1 CCATTGCCCC 0.837558 -60 CATAGCAAGAAAAGTTTTGCCCTTACTATTGGG 88 21 0 AAATTGCCCT 0.707106 -73 AGGCCAGGTAATAATTTTTCCCCTTTGGAAACT 96 124 1 ATATTTCCCC 0.508754 -177 AGGCAACATCAAAAATTTTCCCTGGGTTTTCAC 96 212 1 AAAATTCCCT 0.371568 -89 GGTGGAAACTCCTGCCCCATATCTGTGG 102 218 0 AAATCGCCCC 0.764944 -18 AAGGCCAATCAAAATTGAGCCCCAACTCGCTAC 104 173 1 AAATTGCCCC 0.89449 -109 CAGTCAACACAAAAATATTCCCCCAAAGTTTTC 123 203 1 AAAATTCCCC 0.674933 -98 ACAAGCCCTCCAAGTTTAGCCCC 166 1 0 CAATTGCCCC 0.845041 -300 TGTCCCCCTTAAATTTTATCCCCATTAGTCCCA 169 22 0 AAATTTCCCC 0.896451 -145 CCCATGCGAGAAAATTCATCCCTTGGCACAATG 175 222 0 AAATTTCCCT 0.711426 -25 AACCAGGGCGAAAATTTTGCCCCCATTCCTCTG 178 55 1 AAATTGCCCC 0.89449 -55 GGCTAAACTTAAAGATCCGCCCCTAGATAGCCA 181 43 0 AAAATGCCCC 0.67032 -88 TGGAACCACGAAAGTTCCTCCCCCAGAGTAACC 192 98 0 AAATTTCCCC 0.896451 -203 TTACTGTAGCAAACTCTCGCCCCCAGATGGTTG 197 35 0 AAATCGCCCC 0.764944 -72 TCGTTGTGAACCAATTTTGCCCTTCCACTATCC 200 51 1 CCATTGCCCT 0.594861 -44 CCTCTAGTAACCAGTCCTGCCCCTATCAAAACT 202 26 0 CCATCGCCCC 0.664343 -229 TGAACTTCTGCCATATAGTCCCCTTCGTGAATA 205 256 1 CCAATTCCCC 0.558064 -45 TAAACTTGTTCCCCGAAAATCCCT 207 2 1 AAATTTCCCC 0.896451 -153 ATTTAAATTAACAATTGCTCCCC 208 1 0 ACATTTCCCC 0.89113 -51 *** ** ***** Masking position 3 Map Score: 30.0567 Number of sites scoring better than the average of aligned sites = 453 Number in coding regions = 390 Number in noncoding regions = 63 Number of orfs with sites within 600 bp upstream = 74 Fraction of orfs with sites within 600 bp upstream = 0.0118856 Motif number 13 GTTAGCTAATTTGCCCTACCCATCAATCTGT 53 131 1 TTGCCTACCC 0.90719 -65 GGGGGAGGAATTAATCTTCCCTACCGTTGGC 58 38 1 TTAACTTCCC 0.633562 -40 CTCCAATTATTTTACCTTCCCACCTACACTG 82 56 0 TTTACTTCCC 0.916442 -165 TTAAAACATTCTGAACTTCCCACTACTTACC 111 29 0 CTGACTTCCC 0.794494 -33 CAAAATTAGTTTTAGCTCCCCCTTCCCCCAC 123 251 0 TTTACTCCCC 0.744448 -50 TATATTGTAGTTGAGCTTCCCCCAGAGGGTT 124 164 1 TTGACTTCCC 0.939331 -37 AAATTGACGACTGCACTACCCTATTCTCCAC 129 245 1 CTGCCTACCC 0.709361 -56 ATTGTTGGTATTTATCTACCCTCTTCTAGTT 130 115 0 TTTACTACCC 0.925751 -64 GTTAACTGTGTTTAACTACCCTTTTTCTTGG 130 153 1 TTTACTACCC 0.925751 -26 AGCGAACTAATTGCGCTACCCTGAGCCTGGA 151 238 1 TTGCCTACCC 0.90719 -63 CACTTTTATTTTTAACTTCCCCCCAAACTTG 156 72 0 TTTACTTCCC 0.916442 -87 GTAAGAAAATTTTAACTACCCAAGGCTGAGC 159 222 1 TTTACTACCC 0.925751 -34 GAAGTTTCAGTTTATCTTCCCAATTTCAGGG 177 36 0 TTTACTTCCC 0.916442 -81 TTAATTAGTTTTGATCTTCCCTCAA 189 5 0 TTGACTTCCC 0.939331 -160 TGAAACTTTTTTGAGCTACCCGTATTTCTGG 191 57 1 TTGACTACCC 0.946239 -114 CCTAGGGTTTTTTCCCTACCCTGGGCAGCCC 202 57 0 TTTCCTACCC 0.873803 -198 **** ****** Masking position 7 Map Score: 13.5124 Number of sites scoring better than the average of aligned sites = 103 Number in coding regions = 82 Number in noncoding regions = 21 Number of orfs with sites within 600 bp upstream = 19 Fraction of orfs with sites within 600 bp upstream = 0.00305172 Motif number 14 CCATGGCCCAAAACCAGGAAAATACTAATAAA 10 44 1 AACCAGGAAA 0.860439 -98 TACTAAGGGCAGGCGAGGGAAAATCTCCTTCA 23 183 0 AGCGAGGAAA 0.903011 -118 GCCTTACCGAAAACGGGGAAAAAATTTGATTA 26 12 1 AACGGGGAAA 0.795262 -236 GCCCAAGACCAGGAAAATCAACTGCAA 29 6 1 AGCCAGGAAA 0.890992 -111 TGGGCTAGGAAAACGGGGTAAAATCAGCAAGT 38 141 1 AACGGGGAAA 0.795262 -53 GCGGGGAGCTTGTCGAGGGAAACAGCGCAGAA 48 83 0 TGCGAGGAAA 0.862734 -137 GGTGCCCAGGGAAAAAACAGATAA 80 3 1 TGCCAGGAAA 0.846572 -107 GGGAGAGCCTAAACCAGGTAAATTTGATTGCG 84 234 0 AACCAGGAAA 0.860439 -67 TCCTGACAAAAGTCTAGGCAAAATATGTTAGT 85 33 0 AGCTAGGAAA 0.787223 -108 CTCGCAACAATGGCGGGGCAAAATAGAATATG 87 39 0 TGCGGGGAAA 0.7766 -30 CCCTTTCCATTACCCAGGGAAA 89 66 1 TACCAGGAAA 0.806275 -12 TCAGGGTGAAAACCCAGGGAAAATTTTTGATG 96 218 0 AACCAGGAAA 0.860439 -83 AACCCCACTAAAGCTAGGAAAAAATCCATTAC 105 57 1 AACTAGGAAA 0.736196 -164 CTCCCTAGTGTAGCGAGGAAAAGACTTGCATT 117 96 0 TACGAGGAAA 0.825809 -113 GAGTGGCATCTATCCAGGGAAAATCCTTGCCG 120 75 0 TACCAGGAAA 0.806275 -94 CAATTCTCCTTGCCTAGGCAAATTTGAAAATT 125 68 1 TGCTAGGAAA 0.714087 -92 GATCGCCTTAAAACGAGGGAAAAAGCCGCCCG 134 43 1 AACGAGGAAA 0.875355 -248 GGTCGGTTTTTGACTGGGGAAAGAAGAGAAAC 138 86 0 TGCTGGGAAA 0.580078 -143 GATTCAAGTAAGTCGGGGTAAACAAATTTTTG 152 122 0 AGCGGGGAAA 0.837387 -66 ACATCGGCTAAACCTAGGAAAAATCGCCCGTT 157 50 0 AACTAGGAAA 0.736196 -153 ** ***** *** Masking position 10 Map Score: 14.3044 Number of sites scoring better than the average of aligned sites = 261 Number in coding regions = 215 Number in noncoding regions = 46 Number of orfs with sites within 600 bp upstream = 54 Fraction of orfs with sites within 600 bp upstream = 0.00867331 Motif number 15 CACAGCTTTTTGGGGACAGCAGGCTGCTGT 15 39 0 TGGGGACAGC 0.959786 -87 TGCGTTGGTCTGGGGTTAGCTAACCGCAAA 26 221 0 TGGGGTTAGC 0.91122 -27 ACCCATCTTACGGGGACAGCGTAAAGGTTT 31 158 0 CGGGGACAGC 0.864996 -43 AAGTCCCCATTGAGGTCAGCTAA 34 97 1 TGAGGTCAGC 0.744707 -13 GCAAAATTGCCGGGGACAGTTAGCTAATTT 53 113 1 CGGGGACAGT 0.671738 -83 CTAGCTTTAGTGGGGTTGGTCAGCCCGAAC 105 44 0 TGGGGTTGGT 0.664592 -177 TAGATAGATATGGGGCAGGCGGTAGTCCCC 117 36 1 TGGGGCAGGC 0.624302 -173 CAAGGAGAATTGGGGTCGGCAGTGGAGCGG 125 50 0 TGGGGTCGGC 0.968907 -110 GCACAATTATTGGGGTCAGTTTTAACCCCG 138 147 0 TGGGGTCAGT 0.942745 -82 AATGGGCTTCTGGGGTTAGCGATCGCCAAA 141 87 0 TGGGGTTAGC 0.91122 -141 TAGGTTCCTATGGGGACAGCACCAATCAAC 152 90 1 TGGGGACAGC 0.959786 -98 ATCGTTAAAATGGGGTAAGCCGAGATTCTA 168 30 0 TGGGGTAAGC 0.877496 -181 TCAATTAATCTGGGGTCAGTAACCTGAATT 179 118 0 TGGGGTCAGT 0.942745 -56 ATAGCTCTCTTGGGGTCGGTGGTGTCCTCG 202 100 0 TGGGGTCGGT 0.908697 -155 TGGGTTGATCTGGGGCCAGCATCGAACCCC 203 12 0 TGGGGCCAGC 0.951892 -91 ********** Masking position 5 Map Score: 10.2832 Number of sites scoring better than the average of aligned sites = 260 Number in coding regions = 235 Number in noncoding regions = 25 Number of orfs with sites within 600 bp upstream = 35 Fraction of orfs with sites within 600 bp upstream = 0.00562159