AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00230_synecho_reg_100.orf -o00230_synecho_100.ace -a/home/amcguire/alignace/lib/ORF_synecho.txt -z/skink1/amcguire/genomes/synecho.fna -g0.48 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.48 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 sll1059 79 adk; adenylate kinase. [EC:2.7.4.3] #2 sll1058 86 dapB; dihydrodipicolinate reductase. [EC:1.3.1.26] [SP:DAPB_SYNY3] #3 sll1057 300 trx; thioredoxin M. #4 sll1056 137 purL; phosphoribosylformyl glycinamidine synthetase II. [EC:6.3.5.3] #5 slr1123 300 gmk; guanylate kinase (GMP kinase). [EC:2.7.4.8] [SP:KGUA_SYNY3] #6 sll1043 127 pnp; polyribonucleotide nucleotidyltransferase. [EC:2.7.7.8] #7 slr1099 300 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase. [EC:4.1.1.-] #8 slr0965 143 dnaN; DNA polymerase III, beta chain. [EC:2.7.7.7] [SP:DP3B_SYNY3] #9 slr0676 157 cysC; adenylylsulfate 3-phosphotransferase. [EC:2.7.1.25] #10 sll0646 38 cyaA; adenylate cyclase. [EC:4.6.1.1] #11 sll0645 74 hypothetical protein. #12 sll0644 195 esterase. #13 sll1749 300 hypothetical protein. #14 sll1572 55 dnaE; DNA polymerase III alpha subunit. [EC:2.7.7.7] #15 sll1571 100 hypothetical protein. #16 sll1823 238 purA; adenylosuccinate synthetase (IMP--aspartate ligase). #17 sll1818 108 rpoA; DNA-directed RNA polymerase alpha chain (transcriptase alpha #18 sll1815 125 adk; adenylate kinase. [EC:2.7.4.3] #19 sll1789 107 rpoC2; DNA-directed RNA polymerase delta chain. [EC:2.7.7.6] #20 sll1787 85 rpoB; DNA-directed RNA polymerase beta chain (transcriptase beta #21 sll1786 135 hypothetical 29.3 kD protein sll1786. [SP:YH86_SYNY3] #22 slr1226 212 purC; phosphoribosyl aminoidazole succinocarboxamide synthetase. #23 sll1360 167 dnaX; DNA polymerase III subunit. [EC:2.7.7.7] #24 sll1275 187 pykF; pyruvate kinase. [EC:2.7.1.40] #25 slr1256 155 ureA; urease gamma subunit (ureA amidohydrolase). [EC:3.5.1.5] #26 slr1991 40 cyaA; adenylate cyclase. [EC:4.6.1.1] #27 slr1992 209 glutathione peroxidase. [EC:1.11.1.9] #28 slr1722 126 guaB; IMP dehydrogenase subunit. [EC:1.1.1.205] #29 sll1430 300 apt; adenine phosphoribosyltransferase. [EC:2.4.2.7] #30 slr1325 185 spoT; (p)ppGpp 3-pyrophosphohydrolase. [EC:3.1.7.2] #31 slr1265 87 rpoC1; DNA-directed RNA polymerase gamma chain. [EC:2.7.7.6] #32 sll1178 129 nodulation protein. [SP:YB78_SYNY3] #33 slr1159 204 purD; phosphoribosylamine--glycine ligase (GARS) (glycinamide #34 slr1164 300 nrdA; ribonucleotide reductase subunit alpha. [EC:1.17.4.1] #35 slr1165 42 met3; sulfate adenylyltransferase. [EC:2.7.7.4] #36 slr1166 49 hypothetical protein. #37 ssl2138 246 hypothetical protein. #38 sll0421 109 purB; adenylosuccinate lyase (adenylosuccinase) (ASL). [EC:4.3.2.2] #39 sll0420 35 ureB; urease beta subunit (ureA amidohydrolase). [EC:3.5.1.5] #40 sll0419 77 hypothetical protein. #41 sll0418 68 sterol-C-methyltransferase. [EC:2.1.1.41] #42 slr0446 300 dnaX_and_dnaZ; DNA polymerase III subunit. [EC:2.7.7.7] #43 sll1852 224 ndk, ndkR; nucleoside diphosphate kinase (NDK) (ndp kinase). #44 sll0176 189 hypothetical protein. #45 sll0757 270 purF; amidophosphoribosyltransferase. [EC:2.4.2.14] #46 slr0213 87 guaA; probable GMP synthase (glutamine-hydrolysing) (glutamine #47 sll0210 114 bacA; bacitracin resistance; possibly phosphorylates undecaprenol. #48 slr0480 24 ycf46; hypothetical protein. #49 slr0482 57 hypothetical protein. #50 slr0483 177 hypothetical protein. #51 sll0398 21 dgt; dGTP triphosphohydrolase. [EC:3.1.5.1] #52 sll0396 216 regulatory components of sensory transduction system. #53 sll0829 112 rapQ; methyltransferase. [EC:2.1.1.64] #54 slr0521 257 hypothetical protein. #55 sll0469 170 prsA; ribose-phosphate pyrophosphokinase (phosphoribosyl #56 sll0587 42 pyk1; pyruvate kinase 1. [EC:2.7.1.40] [SP:KPY1_SYNY3] #57 sll0586 300 hypothetical protein. #58 slr0306 71 probable 5'-nucleotidase precursor. [EC:3.1.3.5] #59 sll0286 123 hypothetical protein. #60 slr0707 182 polA; DNA polymerase I. [EC:2.7.7.7] #61 sll0901 100 purE; phosphoribosylaminoimidazole carboxylase catalytic subunit #62 sll1546 300 ppx; exopolyphosphatase. [EC:3.6.1.11] #63 sll0578 75 purK; phosphoribosylaminoimidazole carboxylase ATPase subunit (air #64 sll0577 195 hypothetical protein. #65 sll0572 300 hypothetical protein. #66 slr0597 161 purH; phosphoribosyl aminoimidazole carboxy formyl #67 slr0603 198 dnaE; DNA polymerase III alpha subunit. [EC:2.7.7.7] Motif number 1 TGTCCTACGACGATTTTCCCTGGTTTAAAAAC 3 39 1 CTTTTCCCTG 0.829991 -262 ACATCCTGAACGTTTTCCCCTAGTTTGTACTG 3 166 1 CTTTCCCCTA 0.794463 -135 CTGATCCCAACTGATCCCCTTGGTTTTGCTAG 3 259 0 CATCCCCTTG 0.814359 -42 CGGGCAAACCCTCAATTCCCTGGCGATCGACA 5 79 0 CAATTCCCTG 0.784902 -222 ACCCGAGTAGCCAATCCCCCTGCCTCCTGAAC 5 219 1 CATCCCCCTG 0.95261 -82 GTGGACAAGGCCCATTTCCCCGGTGATCAACC 6 24 1 CATTTCCCCG 0.90824 -104 TCACTAAAGCCTTTGTCCCCCAACTATTTTCA 7 186 1 CTGTCCCCCA 0.700161 -115 AAGTGTAAGTCCAAATCCCCCAACCTTGCCGG 7 226 0 CAATCCCCCA 0.813461 -75 TGGGATTGGGATCATCTCCCTGGAACGGACAG 8 41 1 AATCTCCCTG 0.840168 -103 GGATTAGTCCCTTATTTCCCCGTAAAGTTGAA 9 55 0 CATTTCCCCG 0.90824 -103 GAAATAAGGGACTAATCCCTTGGCGATCGGGC 9 69 1 AAATCCCTTG 0.53576 -89 GTTATTGCCGATTATTCCCCTGCCACTGGTAA 13 222 1 AATTCCCCTG 0.904792 -79 ATCAGCATCAAAAAATCCCTCAAGGCTTCACA 14 19 1 AAATCCCTCA 0.369423 -37 GAATCCAAGCAAGAACTCCCTGTATTTTGCCT 15 73 1 AAACTCCCTG 0.74523 -28 GGTGATTTTACCTTTTCCCTCGTCGCCCCACT 16 193 0 CTTTCCCTCG 0.791045 -46 CCCTTAATTGCCTTGCCCCCTAATCTCAATCT 19 77 1 CTGCCCCCTA 0.668268 -31 CAAAAACCAGAGGTTTTCCCCAGCTAGAATAC 21 78 0 ATTTTCCCCA 0.604067 -58 GGGTATTTTTCCATACCCCCCGTGTCCGTATT 22 42 0 CTACCCCCCG 0.926307 -171 AGTTAGGCTGAGAATCCCCCTGTCTGTTGATC 23 130 1 AATCCCCCTG 0.925232 -38 GGATAATGAGAATATTTCCCTAACACCGCTTA 24 114 1 AATTTCCCTA 0.575856 -74 ACAAATAAACAAATCCCCCCCGGCGATCGCCT 27 82 1 ATCCCCCCCG 0.628976 -128 AAACCCAATAAAAATCCCCCCAGAATAATCCC 28 77 1 AATCCCCCCA 0.862673 -50 CATTGCAACTATCAACCCCCTGGGATTATTCT 28 98 0 AAACCCCCTG 0.873194 -29 ATGCTTGTAGAGAATTCCCCTGTACCCCACCG 29 181 1 AATTCCCCTG 0.904792 -120 CTAAAAATAAAAAAATCCCCCGAAATATGGGA 30 53 0 AAATCCCCCG 0.888667 -133 ACGCAATGCCCATAATTCCCCAGGCTAAGTTT 30 96 1 CAATTCCCCA 0.64942 -90 GGGGTAAAACAAATTTCCCCTGGGGCCGGAGA 33 143 0 ATTTCCCCTG 0.876163 -62 TTACCCCAATCCATTCTCCCCGAAGAATTTCC 33 168 1 CTTCTCCCCG 0.905619 -37 AATTTCCGTTCCCAACTCCTTG 33 193 1 CAACTCCTTG 0.509066 -12 GGATCCGTGGCAAATTTCCTTGAAAAGGGTAA 34 201 0 CATTTCCTTG 0.588655 -100 GAAACTAAGCATCATTTCCTCAAGCTTGTGAA 34 263 1 AATTTCCTCA 0.309018 -38 AATTGGAGAAATAATTCCCTTAATTCCT 35 25 1 AATTCCCTTA 0.410898 -18 GAGATTAATCCTAATCTCCCTAAGTATCCTTT 37 133 1 CATCTCCCTA 0.741722 -114 CTATACATTCCCCTGTCCCCTGACAACTAGAC 45 51 1 CTGTCCCCTG 0.821426 -220 GAAGACATAAATAAATTCCCCAATTTTTAAGC 46 53 0 AAATTCCCCA 0.532789 -35 AACGTTTTTAAACTGTCCCCTAGAATTGTGAT 47 31 0 ATGTCCCCTA 0.487805 -84 ATGGGCCAGAAAAAATCCCCCGAACATCAAAC 50 110 1 AAATCCCCCG 0.888667 -68 GGCCCAGAAAAAATTTCCCCTGAGGAAGAAGC 52 82 0 ATTTCCCCTG 0.876163 -135 ACGTTTTGAGACCTTCCCCTTGGCTTAACCCA 52 133 1 ATTCCCCTTG 0.66783 -84 CTTGCTATTCCACTGCTCCTTGATGGGACTAG 54 201 1 CTGCTCCTTG 0.357019 -57 TGGCGTCACACTTTTCCCCCTGGGGAGCAGAT 57 65 1 CTTCCCCCTG 0.937365 -236 GGCAAAAACCCTATGCCCCCCGTCCCAACCTG 57 181 0 CTGCCCCCCG 0.900408 -120 TTAACAAATACGGAACTCCCCACCGGCAAAAA 57 205 0 CAACTCCCCA 0.706926 -96 AAGCTTTGATCGCTTCCCCCTGGTGAATCT 59 9 0 CTTCCCCCTG 0.937365 -115 ACCTGGGGGCCATAATCCCTCGGGCCATGGGA 62 33 0 CAATCCCTCG 0.738877 -268 GTTTGAGCAAATTTTCTCCTCAGTGTTGCTTT 62 156 1 ATTCTCCTCA 0.302429 -145 GTCCATTGTTATCAACCCCTCGCAAAGCAACA 62 179 0 AAACCCCTCG 0.694025 -122 AGTTTTGACCCTAACTCCCCCGTTCCTGTCCC 62 262 1 CACTCCCCCG 0.739624 -39 TTATGTTCCACTGATTTCCTCGGCGGCAAGAA 64 81 0 CATTTCCTCG 0.683547 -115 ACTTTTCCTCACTTACTCCCCGAATCA 65 6 0 ATACTCCCCG 0.766739 -295 TTGCCTGGGAACCTTCTCCCCAATCTTGGTTC 65 111 0 ATTCTCCCCA 0.665177 -190 TAAAGTTTGTCAGTTTCCCCCAACTTCAAAGT 66 110 1 CTTTCCCCCA 0.853679 -52 AAGCTAGGGGACTTTTCCCCTGCCCT 66 146 1 ATTTCCCCTG 0.876163 -16 ACCAGAAATGAAAAGCTCCCTACATTCAGATC 67 107 0 AAGCTCCCTA 0.414378 -92 * ********* Masking position 8 Map Score: 56.5016 Number of sites scoring better than the average of aligned sites = 5685 Number in coding regions = 5098 Number in noncoding regions = 587 Number of orfs with sites within 600 bp upstream = 499 Fraction of orfs with sites within 600 bp upstream = 0.0801478 Motif number 2 GCCACTTCACGGCGATCGCCCGTCGTCTGG 3 228 1 GGCGATCGCC 0.49999 -73 AATAGATTTTGTCGATCGCCAGGGAATTGA 5 70 1 GTCGATCGCC 0.553044 -231 CCGACCAAAGGTTGATCACCGGGGAAATGG 6 35 0 GTTGATCACC 0.559103 -93 CTAATCCCTTGGCGATCGGGCTTAACCACA 9 80 1 GGCGATCGGG 0.944934 -78 AGACTTTTTAGGCGATCGGGGTAGAATCCA 15 50 1 GGCGATCGGG 0.944934 -51 GACTTATTAAGTCGATCAGCGGAT 16 225 1 GTCGATCAGC 0.872829 -14 TCAGGAGGATGGCGATCGCCTAGGGTCTAA 19 37 1 GGCGATCGCC 0.49999 -71 TGGTTACTTTGGAGATCGCCCACGGCATTA 21 108 1 GGAGATCGCC 0.544651 -28 CCCCCTGTCTGTTGATCGCCCGGTTACCTT 23 145 1 GTTGATCGCC 0.6505 -23 CAACTGAAACGGCGATCGTGGCGGATAATG 24 92 1 GGCGATCGTG 0.782642 -96 AATCCCCCCCGGCGATCGCCTATGAGGATC 27 93 1 GGCGATCGCC 0.49999 -117 AGTGGGGGATGGTGATCGGCTGGGCCTCCA 30 164 1 GGTGATCGGC 0.703402 -22 TAAACGGATTGGCGATCGGTCTAGTTCCCA 32 40 1 GGCGATCGGT 0.915039 -90 ATGGGTATTAGTCGATTGGC 39 1 0 GTCGATTGGC 0.774557 -35 AAACCACCCTGGCGATCGCTGTTCCAGAAC 43 96 0 GGCGATCGCT 0.576645 -129 GCAACGGTGGGGCGATCACAATTCTAGGGG 47 17 1 GGCGATCACA 0.6724 -98 GGCAAACTAGGCGATCGCATAGCAAATAT 52 198 0 GGCGATCGCA 0.576645 -19 AAAGCAATTTGGCGATCGGCCTAGTTGTTT 54 236 0 GGCGATCGGC 0.564966 -22 TACTTCCGGAGTCGATTACCAATTCTTGCC 64 59 1 GTCGATTACC 0.480062 -137 ********** Masking position 6 Map Score: 37.2488 Number of sites scoring better than the average of aligned sites = 7840 Number in coding regions = 7140 Number in noncoding regions = 700 Number of orfs with sites within 600 bp upstream = 434 Fraction of orfs with sites within 600 bp upstream = 0.0697077 Motif number 3 GTTTGAAATCTGAGCCCCAACCCGGAATACCTTTTTTAAA 4 28 0 TGCCCACCAC 0.909093 -110 GTCATCATTGTTCGCCACGGGCAGAGCACCTACAACGCAG 5 181 0 TGCCAGGCCC 0.734284 -120 CCGAGTAGCCAATCCCCCTGCCTCCTGAACGATAAAATCA 5 221 1 ACCCCGCCAC 0.983981 -80 GGATTAAAATACGCCCACTGCCACCCCAACCCTGTAAAAT 5 266 0 ACCCAGCCAC 0.965555 -35 ATGCCAAACTTTGCCCACAGCCGCCGACACTGGGCGGTTT 7 102 1 TCCCAGCCAC 0.975258 -199 CTAAAGCCTTTGTCCCCCAACTATTTTCACTAAAGCTCCG 7 189 1 TCCCCACTAC 0.639741 -112 TCCAGGGAGATGATCCCAATCCCACCTTCCTTTTTGTCCT 8 25 0 TTCCCTCCCC 0.726392 -119 TATTTTGCCATAGTCCCATGGCCAATCCCCAAAGGATTTG 8 108 1 TTCCCGGCCC 0.814229 -36 GAAAGAGGTGTCAACCAAGACCAATCGGCCTTGTTTAAGT 13 136 0 TACCAACCCC 0.579351 -165 TGCAAAAGCAAACCCCCTAGCCAGATGCCCGAAAGAGGTG 13 166 0 ACCCCGCCCC 0.987812 -135 AAACCAGAGGTTTTCCCCAGCTAGAATACCAGTTGATCAA 21 67 0 TTCCCGCTCC 0.735966 -69 TCTAAGCGTCTTACCCTTTGCCTTTAGCACCCCCGTCACC 23 55 1 TCCCTGCCAC 0.920229 -113 TTGGGAAAAATTGCCCAAAGCCCAGCCTACCATCGTTGGC 24 38 1 TCCCAGCCAC 0.975258 -150 TTTTACCGTTAAACCCCAGGCCTGTTGACCGTAGAAAAAA 25 96 0 ACCCCGCCCC 0.987812 -60 TGTTGCAATCTTCACCCCGGCCCTGGGCACGGGGTATTTT 27 137 0 TACCCGCCAC 0.891951 -73 ATTGGTCAACAAGGCCCAGACCAGGGTAACAAATAAACCC 28 43 1 AGCCCACCAC 0.876721 -84 TTGGTTTACTTTTGCCATTGCCAAGGCCACTGGTCTTTTC 33 102 1 TGCCAGCCAC 0.945035 -103 GAAATTTGTTTTACCCCAATCCATTCTCCCCGAAGAATTT 33 158 1 TCCCCTCCCC 0.893712 -47 CAATCGACTAATACCCATAGCTCAACTAACCAT 39 13 1 ACCCAGCTAC 0.684676 -23 TTTACCCTGGAAATCCACTGCCTTGTTGACCAAAATAAAC 42 96 0 ATCCAGCCAC 0.898483 -205 GGATTTTTTCTGGCCCATGACCAACCGTCCCGTCCCATCG 50 88 0 TCCCAACCCC 0.93245 -90 CCCAGCCTCTTTTTCCTGCGCCTATCCTCCGGGTTTGATG 50 134 0 TTCCTGCCCC 0.827761 -44 CCACCGGCAAAAACCCTATGCCCCCCGTCCCAACCTGTAC 57 178 0 ACCCTGCCCC 0.91543 -123 CACCATTTTCATTGCCCCCACCGTTTTTCCGTTTGTCCAC 59 66 1 AGCCCACCCC 0.903695 -58 GTCTCGGATCTAGCCCCTTGCCTTGAGAACAAAGAATAGT 60 29 0 TCCCCGCCAC 0.988555 -154 CCATTGGGGGTATGCCCGCGCCTTGATTACTGATAATCTA 64 123 1 TGCCCGCCAC 0.974146 -73 CAACGGGATTATTCCCAGAACCTTTGTTACAATACTTTGC 65 139 0 ACCCAACCAC 0.881514 -162 GGCAGGGGAAAAGTCCCCTAGCTTCTCAACTTTGAAGTTG 66 130 0 ATCCCAGCAC 0.385361 -32 TATTGATCACACTTCCATTGCCCTGCCCCCC 67 2 0 ATCCAGCCCC 0.921123 -197 * **** *** ** Masking position 6 Map Score: 43.037 Number of sites scoring better than the average of aligned sites = 1534 Number in coding regions = 1415 Number in noncoding regions = 119 Number of orfs with sites within 600 bp upstream = 143 Fraction of orfs with sites within 600 bp upstream = 0.0229682 Motif number 4 CGTTAACCCAGGGCAAGCACTGGATGGT 2 9 0 GGGCAAGCAC 0.858466 -78 CCAAAAAGTCGGGCAAACCCTCAATTCCCT 5 90 0 GGGCAAACCC 0.78513 -211 TCACCGATAAGGGCAAAGCCGATGCCCAAA 5 115 0 GGGCAAAGCC 0.79929 -186 TGTTCGCCACGGGCAGAGCACCTACAACGC 5 183 0 GGGCAGAGCA 0.947835 -118 GACGAACCCTGGGCCGACCAAAGGTTGATC 6 48 0 GGGCCGACCA 0.802044 -80 GGGCAGGCTAGGCTAGGACA 8 1 1 GGGCAGGCTA 0.795725 -143 AACGCTGCCTGGGCAGGACAAAGGGCAAAA 11 51 0 GGGCAGGACA 0.821159 -24 AGGGGAAGGCAAAATACAGGGA 15 89 0 GGGAAGGCAA 0.935689 -12 TGAGATTAGGGGGCAAGGCAATTAAGGGGG 19 75 0 GGGCAAGGCA 0.963219 -33 GTTGGGGTTAGGGAAGGCCGGGGAGAGGTT 20 34 0 GGGAAGGCCG 0.790451 -52 GCCTTCCCAAGGGAAAGGACGGTGC 21 6 0 GGGAAAGGAC 0.776478 -130 CCTTTCCCTTGGGAAGGCCAAATGGTTGCA 21 18 1 GGGAAGGCCA 0.971115 -118 ACTCGATAATGGGCAAGCAATCGCGGCGAA 22 100 0 GGGCAAGCAA 0.912279 -113 TTTTATTTTTAGGCAGGCCATAGACGCAAT 30 73 1 AGGCAGGCCA 0.689004 -113 AGTCAAATTGGGGAAGGGCAAATGTAGGAA 33 11 1 GGGAAGGGCA 0.973431 -194 TAACAAAGTTGGGCAGGGCC 41 1 0 GGGCAGGGCC 0.975131 -68 AGAACCCTAGGGGAAAAGAAGATCAAGGAT 43 71 0 GGGAAAAGAA 0.608123 -154 CCATCGATAGGGGAAAACCACCCTGGCGAT 43 110 0 GGGAAAACCA 0.767054 -115 CCGCCAGACAGGGAAGGCAATGACGAACGG 45 173 0 GGGAAGGCAA 0.935689 -98 CCACACCGATGGGACGGGACGGTTGGTCAT 50 82 1 GGGACGGGAC 0.693116 -96 AGCAAAAACTGGGAAGAGAAATTTATTGGA 55 15 1 GGGAAGAGAA 0.805107 -156 CACTCTCAAGGGGACAGGAACGGGGGAGTT 62 274 0 GGGACAGGAA 0.592535 -27 AGGGCAGGGGAAAAGTCCCCT 66 151 0 GGGCAGGGGA 0.862817 -11 GGGGGGCAGGGCAATGGAAGTGT 67 4 1 GGGCAGGGCA 0.985851 -195 ********** Masking position 3 Map Score: 28.9393 Number of sites scoring better than the average of aligned sites = 1013 Number in coding regions = 888 Number in noncoding regions = 125 Number of orfs with sites within 600 bp upstream = 140 Fraction of orfs with sites within 600 bp upstream = 0.0224863 Motif number 5 TGATTAATCTCTCCATTGTTGGGCAACCGTTAA 2 33 0 CTCCTTGTGG 0.588029 -54 CACGGCGATCGCCCGTCGTCTGGGCTAGCAAAA 3 235 1 GCCCTCGCGG 0.880851 -66 CCCAACTGATCCCCTTGGTTTTGCTAGCCCAGA 3 253 0 CCCCTGGTTG 0.677109 -48 CTATTGCAGTCCCCTACGCCGGGCCAAGGAAAC 5 42 0 CCCCACGCGG 0.941043 -259 ATCGCTCGGTGCGCCATGGTTGGGATTAGCCGT 7 154 0 GCGCATGTGG 0.708212 -147 CTCTGTTTTTGCCCTTTGTCCTGCCCAGGCAGC 11 45 1 GCCCTTGCTG 0.896481 -30 GATTAACTCTGGCCTATGGTTTGTTCATAACTT 13 107 1 GGCCATGTTG 0.309247 -194 TTTTCCATACCCCCCGTGTCCGTATTAATATTA 22 35 0 CCCCGTGCGT 0.627808 -178 AAAAACAACGCCGCGATGGCTAGAGATTCGCCG 22 74 1 CCGCATGCAG 0.696034 -139 GCCTTTAGCACCCCCGTCACCGGCTGTTAACTT 23 74 1 CCCCGTCCGG 0.714287 -94 AAAAAACAGTCCGCCCTGACCGGCCAGCTCATT 25 132 1 CCGCCTGCGG 0.789121 -24 GTTTTCAATCCCCCAATGTTAGGATTTGCGGAT 30 124 1 CCCCATGTGG 0.963466 -62 AAACAAATTTCCCCTGGGGCCGGAGAGGAAAAG 33 136 0 CCCCGGGCGG 0.900145 -69 ACCTGGAAAACGCCATTGCCTTGGCAGTTGGAA 38 21 1 CGCCTTGCTG 0.800831 -89 CCTGTTTTGTCCCCATTGTCAGGGAGGCTTAGC 42 231 1 CCCCTTGCGG 0.987745 -70 TGAAAGTGGTGCCCATTGTCAAGCTTTTTACCA 43 33 1 GCCCTTGCAG 0.796803 -192 GGTAACCAGCCCCCATCGATAGGGGAAAACCAC 43 119 0 CCCCTCGTGG 0.906318 -106 AGTGCCCACACCGCAGTGTTTGGTTCTTGGCCA 45 88 0 CCGCGTGTGG 0.854388 -183 TTTATGTCTTCCCCATTGTTCTGA 46 74 1 CCCCTTGTTG 0.918915 -14 AGGAAAGAATCCGCTATGATTGGATCGAAAACC 55 83 1 CCGCATGTGG 0.877035 -88 TTTACCCCCATGTCATGGCAGATTACT 55 154 0 CCCCATGCTG 0.949234 -17 CTCGGATCTAGCCCCTTGCCTTGAGAACAAAGA 60 34 0 GCCCTTGCTG 0.896481 -149 TTGTAAACTTCGCCATTGATTAGGCGGTAGTCT 63 45 1 CGCCTTGTAG 0.447749 -31 GCGGGCATACCCCCAATGGCAGGGAGAGGTTAT 64 109 0 CCCCATGCGG 0.983395 -87 **** *** * ** Masking position 4 Map Score: 21.6511 Number of sites scoring better than the average of aligned sites = 1291 Number in coding regions = 1154 Number in noncoding regions = 137 Number of orfs with sites within 600 bp upstream = 134 Fraction of orfs with sites within 600 bp upstream = 0.0215226 Motif number 6 AAAGGGAGGACTGATCCCAACTGATCCCCTTG 3 269 0 CTTCCCAACT 0.904351 -32 TACGCCCACTGCCACCCCAACCCTGTAAAATT 5 265 0 GCCCCCAACC 0.801931 -36 GATTCTTACCCTCCACCCAACTGTAA 7 5 0 CTACCCAACT 0.77585 -296 AGCTTAACGGCTAATCCCAACCATGGCGCACC 7 148 1 CTTCCCAACC 0.93845 -153 GCTTTGTAAGCTTTCCCTAACCGCAGTGTTTA 18 54 0 CTCCCTAACC 0.884684 -72 CCGGCCTTCCCTAACCCCAACCACCGCAAATT 20 43 1 CTCCCCAACC 0.977835 -43 GAGAATTCCCCTGTACCCCACCGCTCACCTAT 29 190 1 CTACCCCACC 0.858336 -111 CAGCCGATCACCATCCCCCACTAGAGGATATC 30 154 0 CCCCCCCACT 0.975229 -32 CTACATTTGCCCTTCCCCAATTTGACT 33 6 0 CCCCCCAATT 0.738419 -199 CGAAGAATTTCCGTTCCCAACTCCTTG 33 188 1 CCTCCCAACT 0.926116 -17 GGCCCTGCCCAACTTTGTTACCCT 41 3 1 CCGCCCAACT 0.794109 -66 GCCCAATAAACTCCTCCCCACCAGCCAACAAG 42 31 0 CTTCCCCACC 0.943022 -270 TGAATGGTAACCAGCCCCCATCGATAGGGGAA 43 125 0 CCCCCCCATC 0.831691 -100 AAAATCCTCGCCATCCCTCACTCCATTTCAAA 44 104 1 CCCCCTCACT 0.872555 -86 GAAGGGAGAACTATCCCACACCGATGGGACGG 50 67 1 CTCCCACACC 0.716811 -111 CCCTATGCCCCCCGTCCCAACCTGTACAATGA 57 173 0 CCTCCCAACC 0.95286 -128 CACCATTTTCATTGCCCCCACCGTTTTTCCGT 59 66 1 ATCCCCCACC 0.691045 -58 GGCCAATTAACCGTCCCTAACTTAACTTTCCC 62 214 0 CCCCCTAACT 0.863149 -87 TATTAATCCACTTTTCCTCACTTACTCCCCGA 65 15 0 CTTCCTCACT 0.640914 -286 AGTTTGTCAGTTTCCCCCAACTTCAAAGTTGA 66 113 1 TTCCCCAACT 0.560974 -49 ** ******** Masking position 10 Map Score: 18.6212 Number of sites scoring better than the average of aligned sites = 1164 Number in coding regions = 1056 Number in noncoding regions = 108 Number of orfs with sites within 600 bp upstream = 133 Fraction of orfs with sites within 600 bp upstream = 0.021362 Motif number 7 AAGGGCAAAGCCGATGCCCAAAAAGTCGGG 5 107 0 CCGATGCCCA 0.924697 -194 ACCCGAGTAGCCAATCCCCCTGCCTCCTGA 5 219 1 CCAATCCCCC 0.919025 -82 TAAAATACGCCCACTGCCACCCCAACCCTG 5 272 0 CCACTGCCAC 0.789951 -29 TTTTCTGGCGGCAATGCCAAACTTTGCCCA 7 89 1 GCAATGCCAA 0.69281 -212 GGAGATGATCCCAATCCCACCTTCCTTTTT 8 30 0 CCAATCCCAC 0.587145 -114 AGTCCCATGGCCAATCCCCAAAGGATTTGC 8 119 1 CCAATCCCCA 0.905714 -25 GAAAAATTGCCCAAAGCCCAGCCTACCATC 24 42 1 CCAAAGCCCA 0.765951 -146 CTTGAAATTTCCAATGCCCCGCTTGCCAAA 27 44 0 CCAATGCCCC 0.981832 -166 AATAAAATACCCCGTGCCCAGGGCCGGGGT 27 134 1 CCCGTGCCCA 0.883214 -76 GCCTTGTTGACCAATGCCCCACCACTACCC 28 28 0 CCAATGCCCC 0.981832 -99 GGCCATAGACGCAATGCCCATAATTCCCCA 30 88 1 GCAATGCCCA 0.947364 -98 GGCCCTGCCCAACTTTGTTAC 41 2 1 GCCCTGCCCA 0.796275 -67 ATTCATAATCCCGATGCCCAAACCATGTAA 43 152 1 CCGATGCCCA 0.924697 -73 TAGCAAAGAAGCAGTGCCCACACCGCAGTG 45 103 0 GCAGTGCCCA 0.883854 -168 CGGGAATCCACCAATTCCCATAGTCTAAGA 45 200 1 CCAATTCCCA 0.707413 -71 CAGAAGCTAAACAGTGCCCCAATATGGGAA 49 14 0 ACAGTGCCCC 0.58175 -44 CGGCAAAAACCCTATGCCCCCCGTCCCAAC 57 184 0 CCTATGCCCC 0.841748 -117 TAAAAATTCTCCACTGCCCAAGGTAATACG 60 126 0 CCACTGCCCA 0.962125 -57 CACTTCCATTGCCCTGCCCCCC 67 3 0 GCCCTGCCCC 0.821999 -196 ********** Masking position 7 Map Score: 23.3059 Number of sites scoring better than the average of aligned sites = 1331 Number in coding regions = 1236 Number in noncoding regions = 95 Number of orfs with sites within 600 bp upstream = 99 Fraction of orfs with sites within 600 bp upstream = 0.0159011 Motif number 8 AATTGATCGATAAAGTCCAGCAAAAACTCAACCTTTAA 1 43 1 TAAAGAAAAT 0.807228 -37 GCCGATGCCCAAAAAGTCGGGCAAACCCTCAATTCCCT 5 90 0 AAAAGAAACC 0.745387 -211 ATTTAACTTTAAAATTAACTTCAAAATCTGTTGGACAT 12 111 0 AAAATAAAAC 0.67998 -85 TAAGCTTGATAAAACTTAATAGAAAAATTGTTTTGTTT 12 157 1 AAAATAAAAT 0.721439 -39 AAAAAGTCTGAAAAATCCGGCCAAAAATGCTGTCAATT 15 21 0 AAAAGAAAAT 0.913016 -80 ATCCTCCTGAAAAACTAACGGGAAAAATGGTTGGGA 19 9 0 AAAAGAAAAT 0.913016 -99 ACGCCATCAGAAAAAATCCGTCAAAATTACCCTTTTCA 34 175 1 AAAAGAAAAT 0.913016 -126 TAAGACAATAAAAAGGTGAGCCAAAACTCACCTCTCTA 37 50 0 AAAAGAAAAT 0.913016 -197 TCGCATAAATTAAAAAATTGGTAAAAATAAGACAATAA 37 77 0 TAAAGAAAAT 0.807228 -170 ATTACAAAAAACCTGGAAAACGCCATTGCCTTG 38 6 1 AAAAGAAACC 0.745387 -104 GGAATAGTTAAAACAGCAGGGAAAATTAAGTATTAAT 41 42 0 AAAAGAAAAT 0.913016 -27 TTGACCAAAATAAACTGCGGATAAAAACTTTTTAAGAG 42 73 0 TAAAGAAAAC 0.774548 -228 TTACACTTGGTAAAGAAACTGAAAAATCATTCTACTAA 53 22 0 TAAATAAAAC 0.458783 -91 ATCCATTACTAAAAGCATTTTAAAAATTATTCAATGGA 54 163 0 AAAATAAAAT 0.721439 -95 CCCTGTATGGAAAAATATCGTGAAACTTAGAATTTATT 57 11 1 AAAAGAAACT 0.7811 -290 AATCACCCCAAAAATCCCTTTAAAAAACTTAACAAATA 57 227 0 AAAATAAAAC 0.67998 -74 AATCCAGAGATAAAGGTTGGTCAAAACT 57 283 1 TAAAGAAAAT 0.807228 -18 CCAACCCTGGAAAAGTTTTGCTAAAAATTAATTCGGGT 66 42 1 AAAAGAAAAT 0.913016 -120 **** * **** * Masking position 13 Map Score: 13.4038 Number of sites scoring better than the average of aligned sites = 274 Number in coding regions = 201 Number in noncoding regions = 73 Number of orfs with sites within 600 bp upstream = 80 Fraction of orfs with sites within 600 bp upstream = 0.0128493 Motif number 9 GCTAGGGGGTTTGCTTTTGCACCTGTTGTACATT 13 185 1 TTGCTTGCCT 0.737272 -116 GCCCCCTTAATTGCCTTGCCCCCTAATCTCAATC 19 74 1 TTGCCGCCCT 0.938054 -34 TTCTTGCCATTGCAACTATCAACCCCC 28 110 0 TTGCCTGCCT 0.969807 -17 GTTTAACTTTTTGCAGTTGCGGCTGTTTTTTTGG 31 31 0 TTGCATGCCT 0.737272 -57 ACTTTTGCCATTGCCAAGGCCACTGGTCTTTTCC 33 109 1 TTGCCGGCCT 0.992347 -96 ACTCCCACTCTTGTCCAGGAATCTTTGGATGGGA 34 70 0 TTGTCGGACT 0.880089 -231 TCAAGGAAATTTGCCACGGATCCTAGCCTTGTTG 34 210 1 TTGCCGGACT 0.979441 -91 GAAAACGCCATTGCCTTGGCAGTTGGAATGCCAG 38 26 1 TTGCCGGCTT 0.91085 -84 TTTGTCCCCATTGTCAGGGAGGCTTAGCATTGGA 42 236 1 TTGTCGGACT 0.880089 -65 TCATTGGCTGTTGCCATGGCTTCTTCCTCAGGGG 52 64 1 TTGCCGGCCT 0.992347 -153 TTACAATACTTTGCCTGGGAACCTTCTCCCCAAT 65 119 0 TTGCCGGACT 0.979441 -182 ***** *** ** Masking position 2 Map Score: 10.9815 Number of sites scoring better than the average of aligned sites = 237 Number in coding regions = 212 Number in noncoding regions = 25 Number of orfs with sites within 600 bp upstream = 27 Fraction of orfs with sites within 600 bp upstream = 0.00433665 Motif number 10 TCGATAAAGTCCAGCAAAAACTCAACCTTT 1 49 1 CCAGCAAAAA 0.788166 -31 CACCTACAACGCAGAAAAACGGATTCAAGG 5 165 0 GCAGAAAAAC 0.745675 -136 GGCATTGCCGCCAGAAAAGCTGACGGGAGG 7 77 0 CCAGAAAAGC 0.811677 -224 GGGTGGCGCTCCAGAAAAAAAGTGCGCTAG 16 68 1 CCAGAAAAAA 0.955896 -171 TCGCCATCCTCCTGAAAAACTAACGGGAAA 19 22 0 CCTGAAAAAC 0.849062 -86 CCTGTTTATTCCAAAAAAACAGCCGCAACT 31 21 1 CCAAAAAAAC 0.643041 -67 ATCAACGCCATCAGAAAAAATCCGTCAAAA 34 171 1 TCAGAAAAAA 0.630687 -130 TCGGCATCTGCCAGAAGAAATTCAGAGACG 44 45 1 CCAGAAGAAA 0.788166 -145 TAGAAGAAAACCAGAAAAACC 46 2 0 CCAGAAAAAC 0.961695 -86 CGCTCCTGAAAAAAGGGGAGGAAG 50 5 1 CCTGAAAAAA 0.829236 -173 TGGTCATGGGCCAGAAAAAATCCCCCGAAC 50 105 1 CCAGAAAAAA 0.955896 -73 AAAACATGGCCCAGAAAAAATTTCCCCTGA 52 91 0 CCAGAAAAAA 0.955896 -126 ********** Masking position 6 Map Score: 8.75672 Number of sites scoring better than the average of aligned sites = 162 Number in coding regions = 133 Number in noncoding regions = 29 Number of orfs with sites within 600 bp upstream = 35 Fraction of orfs with sites within 600 bp upstream = 0.00562159 Motif number 11 ATGTGCCTAGTGTCCACCGGGTTTGAAATCTGAG 4 54 0 TTCCCGGGTT 0.988833 -84 AAATGGGCCTTGTCCACCGGGTGTCGGGTA 6 7 0 TTCCCGGGTT 0.988833 -121 TACGCCATTATGTCCAACAGATTTTGAAGTTAAT 12 102 1 TTCCCAGATT 0.682784 -94 GGCAGGGTCATTACGGTCGGGTTTACGGGGCCAA 13 17 0 TACGCGGGTT 0.895463 -284 GTGTGGAACCTTTCCAACGGGTCTGGGTCAACCT 22 176 0 TTCCCGGGTT 0.988843 -37 GTCTTATTTGTTTCCGGCGGATTTACCCTGGAAA 42 123 0 TTCCCGGATT 0.956437 -178 GGGAAGGCAATGACGAACGGGTCTAGACCCCTTA 45 159 0 TACGCGGGTT 0.895463 -112 TTCCTGCGCCTATCCTCCGGGTTTGATGTTCGGG 50 128 0 TTCCCGGGTT 0.988833 -50 AAAAATCTTTCCTTGGGATCTTGAAGATTTT 61 8 1 TTCCGGGATT 0.839541 -93 AAATTTGCCATATCCTAGCGGTTTTTCTCCATCA 65 57 1 TTCCGCGGTT 0.754242 -244 GTTAATCATATTTCGAGCTGGTGTTTAAGGTTGA 65 244 1 TTCGCTGGTT 0.771925 -57 * *** ***** * Masking position 12 Map Score: 7.62213 Number of sites scoring better than the average of aligned sites = 134 Number in coding regions = 119 Number in noncoding regions = 15 Number of orfs with sites within 600 bp upstream = 16 Fraction of orfs with sites within 600 bp upstream = 0.00256987 Motif number 12 GTTAATAGTTAAAGGTTGAGTTTTTGCTGGACT 1 56 0 AAAGGTGTTT 0.442677 -24 GAACTATCTAACCGGATTGTTTTTAGGCAATGT 4 96 1 ACCGGTTTTT 0.829283 -42 TCCAGGCTCATTTTATCTGACATT 4 124 0 CCAGGTTTTT 0.96754 -14 AGGCTCAGAGCAAGGCTTATTGTTGGTTGCTCT 8 71 0 CAAGGTTTGT 0.780505 -73 CCATAATTCCCCAGGCTAAGTTTTCAATCCCCC 30 105 1 CCAGGTGTTT 0.896394 -81 ATTTCCTTGAAAAGGGTAATTTTGACGGATTTT 34 187 0 AAAGGTTTTT 0.732365 -114 ATGGCGTTTTCCAGGTTTTTTGTAAT 38 4 0 CCAGGTTTGT 0.932051 -106 TCTCCAAATAACCGCTTAATTTTACTATTTGGC 38 78 0 ACCGCTTTTT 0.466013 -32 AAAAGAAGATCAAGGATAATTTTGGTAAAAAGC 43 55 0 CAAGGTTTTT 0.885414 -170 ACAGCGATCGCCAGGGTGGTTTTCCCCTATCGA 43 104 1 CCAGGTTTTT 0.96754 -121 CATGTAAAATACAGGGTGATTGTTAAGTTTTTT 43 175 1 ACAGGTTTGT 0.829283 -50 CCAGACCGCCCCAGCCTCTTTTTCCTGCGCCTA 50 150 0 CCAGCTTTTT 0.842644 -28 TGCATTGATCCCCGGTTGCTTTTCTACCTTTTA 65 189 0 CCCGGTTTTT 0.932051 -112 ATATGATTAACCAGGGTATTTTTTCTCTTGCTT 65 222 0 CCAGGTTTTT 0.96754 -79 ***** * **** Masking position 7 Map Score: 8.66873 Number of sites scoring better than the average of aligned sites = 258 Number in coding regions = 218 Number in noncoding regions = 40 Number of orfs with sites within 600 bp upstream = 46 Fraction of orfs with sites within 600 bp upstream = 0.00738837 Motif number 13 ATTGAGCCAACCGCCAATCATTTTTATTGGCCCG 3 98 1 CGCAATCTTT 0.966161 -203 TGATAAGCGGTTGTCAAGCGGTTTGTTCTACAGA 7 35 0 TGCAAGCTTT 0.95384 -266 AACTTAACACCGGTCAATCTCTCTAGGTGGGAGA 9 130 0 CGCAATCTCT 0.830548 -28 ACAATAACGTTAGCCAAGAGCTTTTATTATAAGA 16 148 0 TGCAAGATTT 0.643539 -91 GAGATAGCGTCGGTCAAGCTATTTACACGGAGAT 17 67 1 CGCAAGCTTT 0.970652 -42 TGTCGGTTTCCTGACAAGCCGTTTGTGCAAGGTT 22 132 1 CGCAAGCTTT 0.970652 -81 CTGTCAACCCTAGACAATGAATTTTTTCTACGGT 25 75 1 TGCAATGTTT 0.809558 -81 ACTAGACCGATCGCCAATCCGTTTATCTTTCATA 32 31 0 TGCAATCTTT 0.946917 -99 GTGGTGCCCATTGTCAAGCTTTTTACCAAAATTA 43 38 1 TGCAAGCTTT 0.95384 -187 GCCATGGCAACAGCCAATGAATTTGAATGGGTTT 52 50 0 CGCAATGTTT 0.871858 -167 TCCACCATCACAGTTAATCAATTTACACAATTCC 54 69 0 CGTAATCTTT 0.671981 -189 GATTCTTTCCTCGCCAATCTCTTTAGGTTTTGCA 55 60 0 TGCAATCTTT 0.946917 -111 * * ***** *** Masking position 7 Map Score: 7.23066 Number of sites scoring better than the average of aligned sites = 86 Number in coding regions = 62 Number in noncoding regions = 24 Number of orfs with sites within 600 bp upstream = 30 Fraction of orfs with sites within 600 bp upstream = 0.0048185 Motif number 14 AGATTAATCAGTTGAGCAATTCGGATAAAG 2 56 1 GTTGAGCAAT 0.94704 -31 GTTGAGCAAATCCTTTGGGG 8 134 0 GTTGAGCAAA 0.931079 -10 TAACAGCTTTTTTGAGCAAATCGTAATTTC 17 29 1 TTTGAGCAAA 0.720671 -80 GATCAATACAGTTGACCAAAAATATTGCAA 21 43 0 GTTGACCAAA 0.897159 -93 TAGAATACCAGTTGATCAATACAGTTGACC 21 56 0 GTTGATCAAT 0.771825 -80 TAGGCTGGGCTTTGGGCAATTTTTCCCAAT 24 37 0 TTTGGGCAAT 0.609697 -151 TCTGGGCCTTGTTGACCAATGCCCCACCAC 28 33 0 GTTGACCAAT 0.924056 -94 GATTATTCAAATTGACCAATTACATTAAAT 37 213 1 ATTGACCAAT 0.458628 -34 ATGGTTAGTTGAGCTATGGGTATTAGT 39 19 0 GTTGAGCTAT 0.638926 -17 CCACTGCCTTGTTGACCAAAATAAACTGCG 42 92 0 GTTGACCAAA 0.897159 -209 GAGGATTTTGGTTGAGTAATTGATAAGCCT 44 83 0 GTTGAGTAAT 0.52254 -107 AGAGATAAAGGTTGGTCAAAACT 57 288 1 GTTGGTCAAA 0.511048 -13 TACTGAAATGTTTGAGCAAATTTTCTCCTC 62 147 1 TTTGAGCAAA 0.720671 -154 CTTTTCCAGGGTTGGCCAATGCTAACCTCA 66 27 0 GTTGGCCAAT 0.84209 -135 ********** Masking position 9 Map Score: 7.89294 Number of sites scoring better than the average of aligned sites = 350 Number in coding regions = 307 Number in noncoding regions = 43 Number of orfs with sites within 600 bp upstream = 50 Fraction of orfs with sites within 600 bp upstream = 0.00803084 Motif number 15 TTAATCTCTCCATTGTTGGGCAACCGTTAAC 2 32 0 CATGTTGGGC 0.745827 -55 CTCGGGTCATCATTGTTCGCCACGGGCAGAG 5 195 0 CATGTTCGCC 0.788181 -106 ATCCCACCTTCCTTTTTGTCCTAGCCTAGCC 8 16 0 CCTTTTGTCC 0.854273 -128 CTGAGCCTCACATATTTTGCCATAGTCCCAT 8 96 1 CATTTTTGCC 0.691975 -48 TCCTCGTTGGCCCCGTAAACCC 13 2 1 CCTGTTGGCC 0.988116 -299 AAATTGACAGCATTTTTGGCCGGATTTTTCA 15 20 1 CATTTTGGCC 0.925324 -81 CCCAGCCTACCATCGTTGGCCCTGTAAGCCG 24 58 1 CATGTTGGCC 0.972215 -130 CTGGTCTGGGCCTTGTTGACCAATGCCCCAC 28 36 0 CCTGTTGACC 0.920333 -91 CGGATCCTAGCCTTGTTGGCATCAACGACCT 34 226 1 CCTGTTGGCA 0.824702 -75 AAATCCACTGCCTTGTTGACCAAAATAAACT 42 95 0 CCTGTTGACC 0.920333 -206 GCATAGGATACCGTTTTGTCCGACTAAGCCC 42 192 1 CCGTTTGTCC 0.712523 -109 GACAACTAGACCGACTTGGCCAAGAACCAAA 45 72 1 CCGCTTGGCC 0.819888 -199 ACCGCCCCAGCCTCTTTTTCCTGCGCCTATC 50 148 0 CCTTTTTTCC 0.515218 -30 TATGCGATCGCCTAGTTTGCC 52 206 1 CCTGTTTGCC 0.937788 -11 AAAACTTTTCCAGGGTTGGCCAATGCTAACC 66 30 0 CAGGTTGGCC 0.936685 -132 *** ******* Masking position 6 Map Score: 11.073 Number of sites scoring better than the average of aligned sites = 399 Number in coding regions = 373 Number in noncoding regions = 26 Number of orfs with sites within 600 bp upstream = 32 Fraction of orfs with sites within 600 bp upstream = 0.00513974