AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00230_synecho_reg_300.orf -o00230_synecho_300.ace -a/home/amcguire/genomes/ORF_synecho.txt -z/home/amcguire/genomes/synecho.fna -g0.48 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.48 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: tRNA-Ala-1 21 tRNA-Ala. sll0320 33 rnd; ribonuclease D. [EC:3.1.26.3] slr2005 178 hypothetical protein. slr1724 167 hypothetical protein. slr0220 175 glyS; glycyl-tRNA synthetase beta chain (glycine--tRNA ligase beta slr0496 158 hypothetical protein. slr0682 33 hisD; histidinol dehydrogenase. [EC:1.1.1.23] sll1851 102 hypothetical protein. sll0317 139 transposase. sll0650 159 transposase. slr1710 148 mrcB; penicillin-binding protein 1B. sll0398 21 dgt; dGTP triphosphohydrolase. [EC:3.1.5.1] slr1327 27 hypothetical protein. slr1263 27 hypothetical protein. slr1998 32 hypothetical protein. sll0666 63 transposase. slr0480 24 ycf46; hypothetical protein. sll0318 164 hypothetical protein. Input sequences: #1 sll1059 79 adk; adenylate kinase. [EC:2.7.4.3] #2 sll1058 86 dapB; dihydrodipicolinate reductase. [EC:1.3.1.26] [SP:DAPB_SYNY3] #3 sll1057 300 trx; thioredoxin M. #4 sll1056 137 purL; phosphoribosylformyl glycinamidine synthetase II. [EC:6.3.5.3] #5 sll1054 31 hypothetical protein. #6 sll1053 268 hypothetical protein. #7 slr1123 300 gmk; guanylate kinase (GMP kinase). [EC:2.7.4.8] [SP:KGUA_SYNY3] #8 sll1043 127 pnp; polyribonucleotide nucleotidyltransferase. [EC:2.7.7.8] #9 sll0716 202 lepB; leader peptidase I. [EC:3.4.21.89] #10 sll0712 112 cysM; cysteine synthase. [EC:4.2.99.8] #11 sll0711 98 hypothetical protein. #12 sll0710 40 hypothetical protein. #13 sll0709 300 llaI.2; 2nd component required for LlaI restriction activity. #14 slr1099 300 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase. [EC:4.1.1.-] #15 slr0965 143 dnaN; DNA polymerase III, beta chain. [EC:2.7.7.7] [SP:DP3B_SYNY3] #16 slr0966 155 trpA; tryptophan synthase alpha chain. [EC:4.2.1.20] [SP:TRPA_SYNY3] #17 slr0967 51 hypothetical protein. #18 sll0939 24 hypothetical protein. #19 sll0938 40 aspartate transaminase. [EC:2.6.1.1] #20 ssl1792 33 hypothetical protein. #21 sll0936 83 hypothetical protein. #22 slr0969 102 cbiH; precorrin methylase. #23 slr0971 82 hypothetical protein. #24 sll0934 195 ccmA; carboxysome formation protein. [EC:5.4.99.5] #25 ssl1784 164 rpsO, rps15; 30S ribosomal protein S15. [SP:RS15_SYNY3] #26 sll0932 100 hypothetical protein. #27 sll0931 171 hypothetical protein. [EC:2.1.1.45] #28 sll0930 43 hypothetical protein. #29 sll0928 111 apcD; allophycocyanin-B. #30 sll0927 168 metX; S-adenosylmethionine synthetase. [EC:2.5.1.6] #31 sll0925 266 hypothetical 23.0 kD protein sll0925. [SP:Y925_SYNY3] #32 slr0974 300 infC; translation initiation factor IF-3. [SP:IF3_SYNY3] #33 slr0676 157 cysC; adenylylsulfate 3-phosphotransferase. [EC:2.7.1.25] #34 slr0677 110 exbB; biopolymer transport ExbB protein. #35 slr0678 35 hypothetical protein. #36 slr0679 162 sun, fmu; sun protein (fmu protein). [SP:SUN_SYNY3] #37 slr0681 237 hypothetical protein. #38 sll0648 127 lim; lipophilic protein. [EC:2.4.1.-] #39 sll0646 38 cyaA; adenylate cyclase. [EC:4.6.1.1] #40 sll0645 74 hypothetical protein. #41 sll0644 195 esterase. #42 slr0686 254 hypothetical protein. #43 sll0643 300 ureG; urease accessory protein ureG. [SP:UREG_SYNY3] #44 sll1749 300 hypothetical protein. #45 sll1572 55 dnaE; DNA polymerase III alpha subunit. [EC:2.7.7.7] #46 sll1571 100 hypothetical protein. #47 sll1570 41 hypothetical protein. #48 sll1568 91 fibrillin. #49 sll1927 77 oppF; oligopeptide transport ATP-binding protein OppF. #50 sll1926 91 hypothetical protein. #51 sll1925 214 hypothetical protein. #52 slr2007 111 ndhD; NADH dehydrogenase subunit 4. [EC:1.6.5.3] #53 slr2008 49 hypothetical protein. #54 slr2012 247 hypothetical protein. #55 slr2013 142 hypothetical protein. #56 sll1924 300 hypothetical protein. #57 sll1823 238 purA; adenylosuccinate synthetase (IMP--aspartate ligase). #58 ssl3446 300 hypothetical protein. #59 sll1818 108 rpoA; DNA-directed RNA polymerase alpha chain (transcriptase alpha #60 sll1817 48 rpsK, rps11; 30S ribosomal protein S11. [SP:RS11_SYNY3] #61 sll1816 82 rpsM, rps13; 30S ribosomal protein S13. [SP:RS13_SYNY3] #62 sml0006 137 rpmJ, rpl36; 50S ribosomal protein L36. [SP:RL36_SYNY3] #63 ssl3441 143 infA; translation initiation factor IF-1. [SP:IF1_SYNY3] #64 sll1815 125 adk; adenylate kinase. [EC:2.7.4.3] #65 sll1814 101 secY; preprotein translocase secY subunit. [SP:SECY_SYNY3] #66 sll1813 68 rplO, rpl15; 50S ribosomal protein L15. [SP:RL15_SYNY3] #67 sll1812 39 rpsE, rps5; 30S ribosomal protein S5. [SP:RS5_SYNY3] #68 sll1810 59 rplF, rpl6; 50S ribosomal protein L6. [SP:RL6_SYNY3] #69 sll1809 91 rpsH, rps8; 30S ribosomal protein S8. [SP:RS8_SYNY3] #70 sll1808 46 rplE, rpl5; 50S ribosomal protein L5. [SP:RL5_SYNY3] #71 sll1806 23 rplN, rpl14; 50S ribosomal protein L14. [SP:RL14_SYNY3] #72 sll1805 40 rplP, rpl16; 50S ribosomal protein L16. [SP:RL16_SYNY3] #73 sll1804 29 rpsC, rps3; 30S ribosomal protein S3. [SP:RS3_SYNY3] #74 ssl3432 32 rpsS, rps19; 30S ribosomal protein S19. [SP:RS19_SYNY3] #75 sll1802 49 rplB, rpl2; 50S ribosomal protein L2. [SP:RL2_SYNY3] #76 sll1800 39 rplD, rpl4; 50S ribosomal protein L4. [SP:RL4_SYNY3] #77 sll1799 300 rplC, rpl3; 50S ribosomal protein L3. [SP:RL3_SYNY3] #78 sll1789 107 rpoC2; DNA-directed RNA polymerase delta chain. [EC:2.7.7.6] #79 sll1787 85 rpoB; DNA-directed RNA polymerase beta chain (transcriptase beta #80 sll1786 135 hypothetical 29.3 kD protein sll1786. [SP:YH86_SYNY3] #81 ssl2233 95 rpsT, rps20; 30S ribosomal protein S20. [SP:RS20_SYNY3] #82 sll1123 112 hypothetical protein. #83 sll1121 98 putative DNA helicase. [EC:3.6.1.-] #84 sll1120 194 chromosome segregation protein SMC1. #85 sll1119 142 hypothetical protein. #86 slr1194 153 hypothetical protein. #87 slr1195 28 hypothetical protein. #88 slr1196 27 hypothetical protein. #89 slr1197 42 hypothetical protein. #90 sll1118 46 hypothetical protein. #91 ssr2009 198 hypothetical protein. #92 slr1198 103 rehydrin. #93 slr1199 184 mutL; DNA mismatch repair protein MutL. #94 slr1200 97 livM; high-affinity branched-chain amino acid transport permease #95 slr1201 115 hypothetical protein. #96 slr1202 109 malF; putative maltose transport permease protein. #97 slr1203 105 hypothetical protein. #98 slr1204 47 htrA; serine protease HtrA. [EC:3.4.21.-] #99 slr1205 273 hypothetical protein. #100 slr1206 67 hypothetical protein. #101 slr1207 221 hypothetical protein. #102 ssr2016 251 hypothetical protein. #103 slr1211 91 cobN; CobN protein. #104 slr1212 48 ETR1; ethylene response sensor protein. #105 slr1213 300 LumQ. #106 slr1226 212 purC; phosphoribosyl aminoidazole succinocarboxamide synthetase. #107 slr1227 114 IAP75; chloroplast import-associated channel IAP75. #108 slr1228 47 prfC; peptide chain release factor 3 (RF-3). [SP:RF3_SYNY3] #109 slr1229 99 hypothetical protein. #110 sll1135 153 hypothetical protein. #111 slr1232 300 hypothetical protein. #112 sll1360 167 dnaX; DNA polymerase III subunit. [EC:2.7.7.7] #113 slr1440 56 hypothetical protein. #114 sll1359 31 hypothetical protein. #115 sll1358 161 hypothetical protein. #116 sll1356 300 glgP; glycogen phosphorylase. [EC:2.4.1.1] #117 sll1275 187 pykF; pyruvate kinase. [EC:2.7.1.40] #118 slr1362 300 glgP; hypothetical protein. #119 slr1256 155 ureA; urease gamma subunit (ureA amidohydrolase). [EC:3.5.1.5] #120 tRNA-Glu 219 tRNA-Glu. #121 slr1257 196 hypothetical protein. #122 slr1258 130 hypothetical protein. #123 slr1259 55 hypothetical protein. #124 slr1260 63 hypothetical protein. #125 slr1262 195 hypothetical protein. #126 sll1961 80 hypothetical protein. #127 sll1960 34 hypothetical protein. #128 sll1958 138 hisC; histidinol phosphate aminotransferase. [EC:2.6.1.9] #129 sll1957 300 arsA; arsenical resistance operon repressor. #130 slr1991 40 cyaA; adenylate cyclase. [EC:4.6.1.1] #131 slr1992 209 glutathione peroxidase. [EC:1.11.1.9] #132 slr1993 101 thl; acetyl coenzyme A acetyltransferase (thiolase). #133 slr1994 60 fabG; 3-oxoacyl-[acyl-carrier protein] reductase (3-ketoacyl-acyl #134 sll1906 60 428 aa (44.5 kD) bacteriochlorophyll synthase subunit. #135 sll1905 68 sensory transduction histidine kinase. #136 slr1999 38 hypothetical protein. #137 slr2000 257 hypothetical protein. #138 slr2001 147 pepE; peptidase E (alpha-aspartyl dipeptidase). [EC:3.4.-.-] #139 slr2002 32 hypothetical protein. #140 sll1902 300 hypothetical protein. #141 slr1722 126 guaB; IMP dehydrogenase subunit. [EC:1.1.1.205] #142 sll1601 96 hypothetical protein. #143 ssl3127 285 hypothetical protein. #144 sll1599 98 mntA; manganese transport system ATP-binding protein mntA. #145 sll1598 143 mntC; Mn transporter MntC. #146 ssr2898 300 transposase. #147 sll1430 300 apt; adenine phosphoribosyltransferase. [EC:2.4.2.7] #148 slr1325 185 spoT; (p)ppGpp 3-pyrophosphohydrolase. [EC:3.1.7.2] #149 sll1234 280 ahcY; S-adenosylhomocysteine hydrolase. [EC:3.3.1.1] #150 sll1233 98 hypothetical protein. #151 sll1231 48 mtfB; Mannosyltransferase B. #152 sll1229 107 regulatory components of sensory transduction system. #153 sll1228 232 sensory transduction histidine kinase. #154 slr1329 60 atpD, atpB; ATP synthase beta chain. [EC:3.6.1.34] [SP:ATPB_SYNY3] #155 slr1330 159 atpC, atpE; ATP synthase epsilon chain. [EC:3.6.1.34] #156 slr1332 206 fabF; beta ketoacyl-acyl carrier protein synthase. [EC:2.3.1.41] #157 sll1226 89 hoxH; hydrogenase large subunit. #158 ssl2420 51 hypothetical protein. #159 sll1224 45 hoxY; hydrogenase small subunit. #160 sll1223 26 hoxU; hydrogenase subunit. [EC:1.12.1.2] #161 sll1222 40 hypothetical protein. #162 sll1221 76 hoxF; hydrogenase subunit. #163 sll1220 300 potential NAD-reducing hydrogenase subunit. [EC:1.6.5.3] #164 slr1265 87 rpoC1; DNA-directed RNA polymerase gamma chain. [EC:2.7.7.6] #165 sll1178 129 nodulation protein. [SP:YB78_SYNY3] #166 slr1267 25 ftsW; probable cell division protein ftsw. [SP:FTSW_SYNY3] #167 slr1269 96 ggt; gamma-glutamyltranspeptidase precursor. [EC:2.3.2.2] #168 slr1270 197 hypothetical protein. #169 slr1271 251 rffM; UDP-N-acetyl-D-mannosaminuronic acid transferase. [EC:2.4.1.-] #170 slr1272 29 hypothetical protein. #171 slr1273 184 hypothetical protein. #172 slr1274 81 pilM; membrane protein. #173 slr1275 39 hypothetical protein. #174 slr1276 80 hypothetical protein. #175 sll1173 66 hypothetical protein. #176 slr1278 49 hypothetical protein. #177 sll1172 282 thrC; threonine synthase. [EC:4.2.99.2] #178 slr1279 71 ndhC; NADH-plastoquinone oxidoreductase chain 3. [EC:1.6.5.3] #179 slr1281 300 ndhJ; NADH-plastoquinone oxidoreductase subunit J (orf 155). #180 slr1159 204 purD; phosphoribosylamine--glycine ligase (GARS) (glycinamide #181 slr1160 52 hypothetical protein. #182 ssl2153 82 rpiB; ribose phosphate isomerase B. #183 sll1094 300 transposase. #184 slr1164 300 nrdA; ribonucleotide reductase subunit alpha. [EC:1.17.4.1] #185 slr1165 42 met3; sulfate adenylyltransferase. [EC:2.7.7.4] #186 slr1166 49 hypothetical protein. #187 ssl2138 246 hypothetical protein. #188 sll1091 300 chlP; geranylgeranyl hydrogenase. [SP:CHLP_SYNY3] #189 sll0421 109 purB; adenylosuccinate lyase (adenylosuccinase) (ASL). [EC:4.3.2.2] #190 slr0445 56 hypothetical protein. #191 sll0420 35 ureB; urease beta subunit (ureA amidohydrolase). [EC:3.5.1.5] #192 sll0419 77 hypothetical protein. #193 sll0418 68 sterol-C-methyltransferase. [EC:2.1.1.41] #194 slr0446 300 dnaX_and_dnaZ; DNA polymerase III subunit. [EC:2.7.7.7] #195 sll1852 224 ndk, ndkR; nucleoside diphosphate kinase (NDK) (ndp kinase). #196 sll1849 79 hypothetical protein. #197 slr1938 87 hypothetical protein. [SP:YJ38_SYNY3] #198 sll1848 284 hypothetical protein. #199 slr1939 91 hypothetical protein. #200 slr1940 97 hypothetical protein. #201 ssr3300 112 hypothetical protein. #202 sll1845 121 hypothetical protein. #203 slr1942 38 hypothetical protein. #204 ssr3304 52 hypothetical protein. #205 slr1943 235 dpm1; dolichol phosphate mannose synthase. [EC:2.4.1.83] #206 slr1944 94 hypothetical protein. #207 slr1945 64 yibO; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. #208 ssr3307 236 ycf47; hypothetical protein. #209 slr1946 160 hypothetical protein. #210 sll1841 210 odhB; dihydrolipoamide acetyltransferase component (E2) of pyruvate #211 slr1949 300 hypothetical protein. #212 sll0176 189 hypothetical protein. #213 ssl0312 49 hypothetical protein. #214 sll0175 44 ORF1. #215 sll0174 41 hypothetical protein. #216 sll0173 61 hypothetical protein. #217 sll0172 300 hypothetical protein. #218 sll0757 270 purF; amidophosphoribosyltransferase. [EC:2.4.2.14] #219 smr0001 153 psbT; photosystem II PsbT protein. #220 slr0780 91 hypothetical protein. #221 sll0756 72 hypothetical protein. #222 sll0755 112 thiol-specific antioxidant protein. [SP:Y755_SYNY3] #223 sll0754 58 hypothetical protein. #224 ssl1417 110 ycf33; Ycf33. #225 sll0753 73 folD; methylenetetrahydrofolate dehydrogenase. [EC:1.5.1.5] #226 sll0751 135 ycf22; hypothetical protein. #227 slr0782 90 hypothetical protein. [SP:Y782_SYNY3] #228 sll0750 145 sensory transduction histidine kinase. [EC:2.7.-.-] #229 sll0749 188 hypothetical protein. #230 sll0325 222 hypothetical protein. #231 slr0342 130 petB; cytochrome b6. [EC:1.10.99.1] [SP:CYB6_SYNY3] #232 slr0343 251 petD; cytochrome b6-F complex subunit 4 (17 kD polypeptide). #233 slr0344 127 rfbW; mannosyl transferase. #234 slr0345 204 hypothetical protein. #235 sll0322 45 hypF; transcriptional regulatory protein hypF. [SP:HYPF_SYNY3] #236 sll0321 138 hypothetical protein. #237 sll0319 276 hypothetical protein. #238 slr0350 174 transposase. #239 slr0351 152 hypothetical protein. #240 sll0315 123 transposase. #241 slr0353 300 hypothetical protein. #242 slr0213 87 guaA; probable GMP synthase (glutamine-hydrolysing) (glutamine #243 sll0210 114 bacA; bacitracin resistance; possibly phosphorylates undecaprenol. #244 slr0216 127 cobU; cobinamide kinase. #245 slr0217 238 hypothetical protein. #246 ssr0349 258 hypothetical protein. #247 sll0209 218 hypothetical protein. #248 sll0208 257 hypothetical protein. #249 sll0207 157 rfbA; glucose-1-phosphate thymidylyltransferase. [EC:2.7.7.24] #250 sll0205 286 hypothetical protein. #251 sll0204 136 gidA; glucose inhibited division protein A. #252 sll0202 129 gidA; glucose inhibited division protein A. [SP:GIDA_SYNY3] #253 sll0200 300 transposase. #254 slr0482 57 hypothetical protein. #255 slr0483 177 hypothetical protein. #256 slr0484 76 sensory transduction histidine kinase. #257 slr0487 135 hypothetical protein. #258 slr0488 126 hypothetical protein. #259 slr0492 187 menE; O-succinylbenzoic acid-CoA ligase. [EC:6.2.1.26] #260 sll0456 93 hypothetical protein. #261 sll0455 127 hom; homoserine dehydrogenase (HDH). [EC:1.1.1.3] [SP:DHOM_SYNY3] #262 slr0495 40 lipopeptide antibiotics iturin a biosynthesis protein. #263 sll0454 202 pheS; phenylalanyl-tRNA synthetase alpha chain (phenylalanine--tRNA #264 sll0691 135 hypothetical protein. #265 ssl1300 255 hypothetical protein. #266 sll0689 300 NaH-antiporter protein. #267 sll0396 216 regulatory components of sensory transduction system. #268 sll0395 116 hypothetical protein. #269 sll0394 134 hypothetical protein. #270 slr0415 53 napA; K(+)/H(+) antiporter. #271 slr0416 300 hypothetical protein. #272 sll0829 112 rapQ; methyltransferase. [EC:2.1.1.64] #273 slr0839 71 hemH; probable ferrochelatase (protoheme ferro-lyase) (hemE #274 sll0827 266 hypothetical protein. #275 slr0841 300 hypothetical protein. #276 slr0521 257 hypothetical protein. #277 slr0522 150 hypothetical protein. #278 sll0471 222 hypothetical protein. #279 sll0470 300 hypothetical protein. #280 sll0469 170 prsA; ribose-phosphate pyrophosphokinase (phosphoribosyl #281 slr0523 50 bioD; dethiobiotin synthetase. [EC:6.3.3.3] #282 sll0467 89 queA; queuosine biosynthesis protein QueA. [EC:5.-.-.-] #283 sll0597 116 hypothetical protein. #284 sll0596 35 hypothetical protein. #285 sll0595 70 hypothetical protein. #286 sll0594 180 cysR; regulatory protein cysr homolog. [SP:CYSR_SYNY3] #287 sll0593 206 glk; glucokinase. [EC:2.7.1.2] #288 slr0615 300 ABC transporter. #289 sll0587 42 pyk1; pyruvate kinase 1. [EC:2.7.1.40] [SP:KPY1_SYNY3] #290 sll0586 300 hypothetical protein. #291 slr0306 71 probable 5'-nucleotidase precursor. [EC:3.1.3.5] #292 sll0286 123 hypothetical protein. #293 sll0284 236 hypothetical protein. #294 sll0283 300 hypothetical protein. #295 slr0707 182 polA; DNA polymerase I. [EC:2.7.7.7] #296 slr0708 149 hypothetical protein. #297 sll0667 37 transposase. #298 sll0665 300 transposase. #299 sll0901 100 purE; phosphoribosylaminoimidazole carboxylase catalytic subunit #300 slr0925 300 ssb; single-stranded DNA-binding protein. #301 sll1546 300 ppx; exopolyphosphatase. [EC:3.6.1.11] #302 sll0578 75 purK; phosphoribosylaminoimidazole carboxylase ATPase subunit (air #303 sll0577 195 hypothetical protein. #304 slr0588 29 hypothetical protein. #305 slr0589 108 hypothetical protein. #306 slr0590 113 hypothetical protein. #307 sll0576 79 HrEpiB. #308 sll0574 206 rfbA; integral membrane O-antigen translocator protein. #309 sll0572 300 hypothetical protein. #310 slr0597 161 purH; phosphoribosyl aminoimidazole carboxy formyl #311 sll0565 35 hypothetical protein. #312 sll0564 44 hypothetical protein. #313 slr0598 33 hypothetical protein. #314 slr0599 110 eukaryotic protein kinase. #315 slr0600 143 hypothetical protein. [EC:1.6.4.5] #316 slr0601 45 hypothetical protein. #317 sll0563 151 hypothetical protein. #318 slr0603 198 dnaE; DNA polymerase III alpha subunit. [EC:2.7.7.7] #319 slr0604 111 lepA; GTP-binding protein lepA. [SP:LEPA_SYNY3] #320 slr0605 300 hypothetical protein. Motif number 1 GCCACTTCACGGCGATCGCCCGTCGTCTGG 3 228 1 GGCGATCGCC 0.499999 -73 AATAGATTTTGTCGATCGCCAGGGAATTGA 7 70 1 GTCGATCGCC 0.573567 -231 ATTAGGATTCGCCAATCGCCGTAAAATGTT 11 18 1 GCCAATCGCC 0.814216 -81 ATTGAGCCATGGCGATCGCCTTTTCCTCGC 17 13 1 GGCGATCGCC 0.499999 -39 AATTCTCGTTGGAGATCGCCATCCTGGTCG 21 18 1 GGAGATCGCC 0.561011 -66 TGTGGTTAAGCCCGATCGCCAAGGGATTAG 33 80 0 CCCGATCGCC 0.965761 -78 GGGGGGAAGAGTCGATCGCCGTTAGGATTG 36 143 1 GTCGATCGCC 0.573567 -20 TGGATTCTACCCCGATCGCCTAAAAAGTCT 46 50 0 CCCGATCGCC 0.965761 -51 CTCTGGGAATCCCGATCGCCAGTCCCGGCC 48 21 1 CCCGATCGCC 0.965761 -71 ACAAACCTTTGGCGATCGCCGCATGGACTC 50 55 1 GGCGATCGCC 0.499999 -37 CAATAGCAATGGCGATCGCCATAAAATCCC 51 150 1 GGCGATCGCC 0.499999 -65 TCGCCCCCCAGGCGATCGCCATCAGAGTTG 58 218 1 GGCGATCGCC 0.499999 -83 TCAGGAGGATGGCGATCGCCTAGGGTCTAA 78 37 1 GGCGATCGCC 0.499999 -71 TGGTTACTTTGGAGATCGCCCACGGCATTA 80 108 1 GGAGATCGCC 0.561011 -28 GAGGCTTTGGGCCGATCGCCACGGCCACTG 82 41 0 GCCGATCGCC 0.577931 -72 TCCGGCCAATGGCGATCGCCAAGCGTCGTA 84 97 1 GGCGATCGCC 0.499999 -98 TCTGGGGTAAGGCGATCGCCTTAGGTCAAA 91 174 1 GGCGATCGCC 0.499999 -25 CCCCCTGTCTGTTGATCGCCCGGTTACCTT 112 145 1 GTTGATCGCC 0.797956 -23 GCGTCAAGAGGCTGATCGCCGTTCTCAG 116 9 0 GCTGATCGCC 0.919307 -292 AATCCCCCCCGGCGATCGCCTATGAGGATC 131 93 1 GGCGATCGCC 0.499999 -117 CAACTATTATGGCGATCGCCAGTTTGGTGG 143 186 1 GGCGATCGCC 0.499999 -100 TGGAGGCCCAGCCGATCACCATCCCCCACT 148 164 0 GCCGATCACC 0.714699 -22 TGGACAAAGGGGCGATCGCCATTCCAGACC 149 207 1 GGCGATCGCC 0.499999 -74 AATTCCCGCAGGCGATCGCC 152 98 1 GGCGATCGCC 0.499999 -10 TAGGAGGATAGGCGATCGCCGGGGGGAGGT 153 134 1 GGCGATCGCC 0.499999 -99 TGGGAACTAGACCGATCGCCAATCCGTTTA 165 40 0 ACCGATCGCC 0.929085 -90 CGGAGGTGTGGGCGATCGCCTGCCAATCAA 169 97 1 GGCGATCGCC 0.499999 -155 CGGACTTGTGGGCGATCGCCTGGGGGCATT 177 99 1 GGCGATCGCC 0.499999 -184 CCGTCCCAGCGGCGATCGCCTACCCCTAAG 188 65 1 GGCGATCGCC 0.499999 -236 ATTAAAATCAGGCGATCGCCGC 190 45 1 GGCGATCGCC 0.499999 -12 GTTCTGGAACAGCGATCGCCAGGGTGGTTT 195 96 1 AGCGATCGCC 0.568689 -129 TTTTCCTTTGGGCGATCGCCTAGATGGTCG 210 74 1 GGCGATCGCC 0.499999 -137 CTTATGCCAAGGTGATCGCCT 215 31 1 GGTGATCGCC 0.51544 -11 AGATAAAGGGGGCGATCGCCGATCCTTGGG 234 31 1 GGCGATCGCC 0.499999 -174 CCCCTAGAATTGTGATCGCCCCACCGTTGC 243 17 0 TGTGATCGCC 0.775319 -98 GTGTTTGCTGTTCGATCGCCTTTGAGTAGA 245 199 0 TTCGATCGCC 0.839204 -40 AGTTAACGACTCCGATCGCCATAAAGCTTT 247 155 0 TCCGATCGCC 0.951427 -64 GCTTAAAAGATGCGATCGCCAAAACGCAGA 253 86 0 TGCGATCGCC 0.572612 -215 GCAAGGATTTGGCGATCGCCTTTTTTGGTT 260 39 1 GGCGATCGCC 0.499999 -55 AGAATGGGGAGCCGATCGCCAGTAACCTAA 261 80 1 GCCGATCGCC 0.577931 -48 ATATTTGCTATGCGATCGCCTAGTTTGCC 267 198 1 TGCGATCGCC 0.572612 -19 CGTTCCGGCTCCCGATCGCCATTTCTCTTC 269 65 1 CCCGATCGCC 0.965761 -70 AAAAAAACTTGGCGATCGCCATGGTGAATC 271 211 1 GGCGATCGCC 0.499999 -90 TTTTATTTGTGTTGATCGCCATTTGACTTC 271 280 0 GTTGATCGCC 0.797956 -21 AAACAACTAGGCCGATCGCCAAATTGCTTT 276 236 1 GCCGATCGCC 0.577931 -22 CCCCCCGATCGGCGATCGCCAAATGCCCCT 283 85 1 GGCGATCGCC 0.499999 -32 GGGAACTAAGCCCGATCGCCTGGATTGATT 286 141 1 CCCGATCGCC 0.965761 -40 GGCGATCGCCAGGATCATTA 288 1 1 GGCGATCGCC 0.499999 -300 TTGAATATTAACCGATCGCCACCGTTGTCC 293 192 1 ACCGATCGCC 0.929085 -45 ATGAGATTATGGCGATCGCCGGAGTAATTC 294 26 1 GGCGATCGCC 0.499999 -275 CCCCAACACTGGCGATCGCCGATTGATCCA 300 86 1 GGCGATCGCC 0.499999 -215 GGCTAGCAATGGCGATCGCCGTAGTTTACC 300 258 1 GGCGATCGCC 0.499999 -43 AATTGCCCCAGGCGATCGCCGCTTGATACC 312 24 1 GGCGATCGCC 0.499999 -21 CGCCTGGATCGGCGATCGCCAATGGAGAAT 319 57 1 GGCGATCGCC 0.499999 -55 ********** Masking position 5 Map Score: 219.739 Number of sites scoring better than the average of aligned sites = 5863 Number in coding regions = 5323 Number in noncoding regions = 540 Number of orfs with sites within 600 bp upstream = 332 Fraction of orfs with sites within 600 bp upstream = 0.0533248 Motif number 2 AAAATAACTCATTGTCCCCAGACAACAA 3 6 0 ATTGTCCCCC 0.550901 -295 GGTAACGGATCTTTTCCCCGGAGCGCTTCGTTC 6 184 0 CTTTTCCCCG 0.730478 -85 CCCGAGTAGCCAATCCCCCTGCCTCCTGAACGA 7 220 1 CAATCCCCCC 0.855056 -81 GGACAAGGCCCATTTCCCCGGTGATCAACCTTT 8 26 1 CATTTCCCCG 0.852654 -102 TTGCGGCAGAAATTCCCCCTACATCAGCCCATC 10 25 1 AATTCCCCCA 0.812661 -88 CACTAAAGCCTTTGTCCCCCAACTATTTTCACT 14 187 1 TTTGTCCCCC 0.557107 -114 GTGTAAGTCCAAATCCCCCAACCTTGCCGGAGC 14 223 0 AAATCCCCCC 0.81069 -78 GCGGAAATCCCCATCCCCCAAGGAAATTAGCCC 16 76 0 CCATCCCCCG 0.847792 -80 TCTGGAATGATTTGCCCCCCAACGTCTTTGGTT 25 23 1 TTTGCCCCCC 0.695002 -142 TCAGGAAGTTTTTGTCCCCTGGGCTGACTCTGC 26 60 1 TTTGTCCCCG 0.60954 -41 GGGCTCTGCTAATTTCCCCATTCTAGGACAGGG 32 13 1 AATTTCCCCC 0.771941 -288 ACATGCTTTAAAAGCCCCCCTGACCCCCAAATT 32 126 1 AAAGCCCCCA 0.700974 -175 AAAGTTTTATTCTGCCCCCTAAATCTCCTCACT 32 203 0 TCTGCCCCCA 0.723655 -98 ATTAGTCCCTTATTTCCCCGTAAAGTTGAATAC 33 52 0 TATTTCCCCA 0.710608 -106 GGCGATCGACTCTTCCCCCCCACAATAGAAACA 36 130 0 TCTTCCCCCC 0.827102 -33 CCTGTGTTGCCCATTCCCCCTGGTCTATCTGAA 37 94 1 CCATTCCCCG 0.754584 -144 TTTGGCTGTTTAATCCCCCCTAGCCCCCCTTAG 42 48 1 TAATCCCCCG 0.844955 -207 AAAGTTTTATTCTGCCCCCTAAATCTCCTCACT 42 127 0 TCTGCCCCCA 0.723655 -128 TTATTGCCGATTATTCCCCTGCCACTGGTAAGA 44 223 1 TTATTCCCCC 0.531688 -78 CGGTAGCGTCAATTTCCCCTTACCTCCATCGAC 49 23 0 AATTTCCCCC 0.771941 -55 TTTGGCCGTTTAATCCCCCCTAGCCCCCCTTGG 54 80 1 TAATCCCCCG 0.844955 -168 GCTAACCGCAAATTTCCCCACTGGAAAGTGTTT 54 200 0 AATTTCCCCG 0.807718 -48 TTTTGGTTAATTCCCCATGGGTCGAAAAGT 55 8 1 TAATTCCCCG 0.75052 -135 CACCTTCCTACAATCCCCCTCCCCCCCATCTAT 56 20 0 CAATCCCCCC 0.855056 -281 TCTTCCCCCCATCCCTGTCCTGT 60 1 1 TCTTCCCCCC 0.827102 -48 GTCTAATCCTCCTGCCCCCTTAATTGCCTTGCC 78 61 1 CCTGCCCCCA 0.778658 -47 AAGGGGAAACTTGTCCCCCATGTATCCTCGTC 84 10 1 CTTGTCCCCG 0.677122 -185 GTTTTCTCTGTCCCCATCATTTTCCCCT 87 10 0 TCTGTCCCCA 0.591094 -19 TCAGGGTCAATATGTCCCCCAAGGGCT 96 93 1 TATGTCCCCG 0.769218 -17 AGGACAATGGCTTTCCCCCTGTACATTTCCAAA 99 28 0 CTTTCCCCCA 0.736759 -246 AGATTAATCAAAATCCCCCAAAGTTTGAGGGAT 99 187 1 AAATCCCCCG 0.841635 -87 GTAATTTAGGTAATCCCCCAAACCATTTGGTCA 100 38 1 TAATCCCCCC 0.814515 -30 CCAGATAAAGTAATCCCCCCATGGACGTAGAGT 102 121 1 TAATCCCCCG 0.844955 -131 CTTATCCGGAAATTTCCCCCCTAACTCTACGTC 102 144 0 AATTTCCCCA 0.705415 -108 GCCATTATTCCCCCTTGGTAGTTATCAA 114 14 0 TATTCCCCCG 0.886406 -18 GTTTCAAAAGCCCCCCTGGCCCCCAAGTT 118 7 1 AAAGCCCCCG 0.804392 -294 ATTTTACTTAACTTCCCCCCAAACTTGGGGGCC 118 28 0 ACTTCCCCCA 0.767459 -273 AGTTAAGTAAAATTCCCCCAGTATTGCCGGAGC 118 48 1 AATTCCCCCA 0.812661 -253 GGCTAGGTATTTATCCCCCTAAATCCCCTTTAA 118 106 1 TTATCCCCCA 0.592669 -195 CTTTTGCGACAATTCCCCCCTTCCCAAGGGGGG 118 148 1 AATTCCCCCC 0.859782 -153 TTTGGCTGTTTAATCCCCCCTAGCCCCCCTTGG 118 171 0 TAATCCCCCG 0.844955 -130 CTCACCCAAACAATTCCCCAAGAAGTTTAAAAC 120 145 0 CAATTCCCCA 0.697317 -75 AAATTAGCTAACTGTCCCCGGCAATTTTGCCAA 125 110 0 ACTGTCCCCA 0.585009 -86 TAGCCAAATTCTTGCCCCCAAAAAGTAAAATTT 129 78 0 CTTGCCCCCA 0.684109 -223 AATTTGGCTACATTTCCCCAGCATCTAACCCAC 129 101 1 CATTTCCCCA 0.767373 -200 ACAAATAAACAAATCCCCCCCGGCGATCGCCTA 131 82 1 AAATCCCCCG 0.841635 -128 TTGATCCGAGTCAGCCCCCAGGGTCAGGGAACC 138 105 1 TCAGCCCCCG 0.76237 -43 AGGTTTTCTTCCCCCTTGCTGGAGTCATT 139 14 0 TCTTCCCCCC 0.827102 -19 AACCCAATAAAAATCCCCCCAGAATAATCCCAG 141 78 1 AAATCCCCCA 0.751833 -49 CCAAGCAAATAATGCCCCCACCAAACTGGCGAT 143 200 0 AATGCCCCCA 0.770462 -86 TTAATGAAGTTATTTCCCCTCCATTTACTGATG 147 98 0 TATTTCCCCA 0.710608 -203 AAAAATAAAAAAATCCCCCGAAATATGGGAGAT 148 50 0 AAATCCCCCA 0.751833 -136 GCAATGCCCATAATTCCCCAGGCTAAGTTTTCA 148 98 1 TAATTCCCCC 0.707949 -88 GCTAAGTTTTCAATCCCCCAATGTTAGGATTTG 148 119 1 CAATCCCCCG 0.879824 -67 CAGCCGATCACCATCCCCCACTAGAGGATATCC 148 153 0 CCATCCCCCA 0.760487 -33 AGTTGCTTGAAAAGTCCCCTGGCCCCAAGCCTA 149 76 1 AAAGTCCCCC 0.646536 -205 AACTTTAAACCTATCCCCCTAGGCTTGGGGCCA 149 95 0 CTATCCCCCG 0.774211 -186 ACTCAACTTTTCTTCCCCCTCCACCAATTCCCG 152 73 1 TCTTCCCCCA 0.771912 -35 AAACCACTGCTATTCCCCCTAACTATTTCCTAA 154 17 1 TATTCCCCCC 0.862783 -44 TCCTAGTCCCCATGGGCCACTGGGA 155 3 1 CTAGTCCCCG 0.594257 -157 AATGTAACCCAATTTCCCCCAGCCGTAACCTTT 169 154 1 AATTTCCCCC 0.771941 -98 AAATTGGCAGAATGCCCCCAGGCGATCGCCCAC 177 106 0 AATGCCCCCC 0.825924 -177 CCTTGCCTTGCCTGCCCCCCCTATTGTCTTCTC 178 20 0 CCTGCCCCCA 0.778658 -52 AACACAAAAATATTCCCCCAAAGTTTTCAGTCC 179 208 1 TATTCCCCCG 0.886406 -93 TTTAGCTCCCCCTTCCCCCACTGTTGCCAATGG 179 239 0 CCTTCCCCCG 0.888585 -62 GGGTAAAACAAATTTCCCCTGGGGCCGGAGAGG 180 141 0 AATTTCCCCG 0.807718 -64 GCCAGGGGTCTTTTTCCCCTGCCAAGGCGCCAA 182 31 0 TTTTTCCCCC 0.619141 -52 ATGTCCTAATTTAGTCCCCTTAAATCCCTCTGA 183 221 0 TTAGTCCCCA 0.383283 -80 TGTGGTGGAGCAATTCCCCTCTGT 188 287 1 CAATTCCCCG 0.801642 -14 TTGCGCCTGTTTTGTCCCCATTGTCAGGGAGGC 194 226 1 TTTGTCCCCG 0.60954 -75 CCTTGATCTTCTTTTCCCCTAGGGTTCTGGAAC 195 73 1 CTTTTCCCCG 0.730478 -152 TGAATGGTAACCAGCCCCCATCGATAGGGGAAA 195 124 0 CCAGCCCCCG 0.811672 -101 TTTCCACAGAAAATTCCCCTAAGGATGCCATCA 197 11 0 AAATTCCCCG 0.745787 -77 TTTTGCTGTCTATTTCCCCACAAAAGTAACTTT 197 65 0 TATTTCCCCA 0.710608 -23 CCAACCCCCAACTTCCCCCAGTCAGGGAAATTA 199 32 0 ACTTCCCCCC 0.82348 -60 GGAATTAAGCCTTTCCCCCAATCCCTAGCAATT 200 72 0 CTTTCCCCCC 0.798232 -26 AATGGTGTTCAAAGTCCCCCAAACTTGCCGGAG 208 172 0 AAAGTCCCCA 0.564086 -65 CTTTGAACACCATTCCCCCCAGAATTGGGGGGC 208 191 1 CATTCCCCCA 0.856647 -46 TTTGTTTGGAAAAGTCCCCCAACTCGTTCGGTT 209 31 1 AAAGTCCCCC 0.646536 -130 TCCCGAAAGGAAATCCCCCAAAACCGAACGAGT 209 52 0 AAATCCCCCA 0.751833 -109 TTTGGCTGTTTAATCCCCCCTAGCCCCTCTTGG 217 106 1 TAATCCCCCG 0.844955 -195 GACTAGGTATTTATCCCCCTAAATCCCACTTAA 217 171 0 TTATCCCCCA 0.592669 -130 TATACATTCCCCTGTCCCCTGACAACTAGACCG 218 52 1 CCTGTCCCCC 0.732976 -219 TATTAAACTCTATTCCCCCGGTCAAAGTTCCAC 226 71 0 TATTCCCCCC 0.862783 -65 GCCGGACTTCCCTTTCCCCAGGGCTTGAAGCTG 230 167 0 CCTTTCCCCG 0.814904 -56 ATCAAAGTCATAATTCCCCAGTGGATCAGGATT 241 215 1 TAATTCCCCG 0.75052 -86 ACGTTTTTAAACTGTCCCCTAGAATTGTGATCG 243 29 0 ACTGTCCCCA 0.585009 -86 TAAACAAATATCAGTCCCCACTCAGGAATCGTT 244 73 0 TCAGTCCCCC 0.587973 -55 CAGTAGTCAATATTTCCCCGTGCTTTCCATAGA 246 64 1 TATTTCCCCC 0.776333 -195 TGCCATCCAAATTTTCCCCTTTAGAACACCTGC 250 219 0 ATTTTCCCCA 0.528643 -68 GGGCCAGAAAAAATCCCCCGAACATCAAACCCG 255 112 1 AAATCCCCCC 0.81069 -66 CGAATATCTGCCATCCCCCGACGATGGCACCAG 256 24 0 CCATCCCCCG 0.847792 -53 TAGAGTCATAATTTTCCCCTTGAATTATCGCTC 265 166 1 ATTTTCCCCA 0.528643 -90 GCCCAGAAAAAATTTCCCCTGAGGAAGAAGCCA 267 80 0 AATTTCCCCG 0.807718 -137 ATTTCTCTTCCCTTTCCCCTAGCCGGTTTTGCC 269 85 1 CCTTTCCCCC 0.780099 -50 CATTGCGCCCCTTTCCCCCTTTATCCCC 269 117 1 CTTTCCCCCA 0.736759 -18 GCAATAATCTAATTCCCCCATCATTGGGGGTTT 273 30 1 AATTCCCCCA 0.812661 -42 AAAACTTTTGAAAGTCCCCAAACCCCCAATGAT 273 49 0 AAAGTCCCCC 0.646536 -23 GGCTTGTTGCTTTGCCCCCATGGTTGAAGGTTA 275 27 1 TTTGCCCCCG 0.738764 -274 ATTGACGCCTCCATTCCCCAACGGCGGTGAACC 275 217 1 CCATTCCCCG 0.754584 -84 CGGAGGAGAGCTTTTCCCCTCTGTCCCATGCTT 275 249 1 CTTTTCCCCG 0.730478 -52 AACCCCGACAAAAGTCCCCCATAGGATAAACCA 278 12 0 AAAGTCCCCA 0.564086 -211 AATTCAGCCAAATTTCCCCAATGGGCGGATTAC 283 15 1 AATTTCCCCG 0.807718 -102 GGCGTCACACTTTTCCCCCTGGGGAGCAGATAA 290 66 1 TTTTCCCCCG 0.785166 -235 GCAAAAACCCTATGCCCCCCGTCCCAACCTGTA 290 179 0 TATGCCCCCC 0.829506 -122 CACCATTTTCATTGCCCCCACCGTTTTTCCGTT 292 66 1 ATTGCCCCCG 0.733887 -58 GCGCCGTCGATCATCCCCCAACACTGGCGATCG 300 71 1 TCATCCCCCA 0.702693 -230 CTCCCCCGTTCCTGTCCCCTTGAGAGTGTTAAC 301 276 1 CCTGTCCCCA 0.660088 -25 TTTACCCCCTAAATTCCCCAACATTTGGTGATT 306 62 0 AAATTCCCCA 0.625799 -52 AGCTAGGGGACTTTTCCCCTGCCCT 310 147 1 CTTTTCCCCC 0.685917 -15 CTGCTAAAAGAATGCCCCCTATCCTAGGCAGAA 315 30 1 AATGCCCCCC 0.825924 -114 AATTTAGGTGCTAGTCCCCATTGTAAAAGGTTT 317 42 0 CTAGTCCCCG 0.594257 -110 ********* * Masking position 7 Map Score: 125.247 Number of sites scoring better than the average of aligned sites = 2779 Number in coding regions = 2381 Number in noncoding regions = 398 Number of orfs with sites within 600 bp upstream = 336 Fraction of orfs with sites within 600 bp upstream = 0.0539672 Motif number 3 GTCCAAATCCCCCAACCTTGCCGGAGCTTTAG 14 218 0 CCCAACTTCC 0.900972 -83 GGGAGATGATCCCAATCCCACCTTCCTTTTTG 15 29 0 CCCAACCCCC 0.972007 -115 AGTTTCCCGGCCAAAACTTGGCACTAAATAAA 27 47 0 CCAAACTTGC 0.682574 -125 AATCAACCTCCCCAATCCTAACAAGCCTGGAA 34 71 1 CCCAACCTAC 0.924528 -40 CTAAACCCTTCCCAATCCCATCTTTGCCC 38 109 1 CCCAACCCTC 0.890192 -19 GATTAAACAGCCAAAACTCAACTTTTTAAAAA 42 31 0 CCAAACTCAC 0.828801 -224 GTTTAATCCCCCCTAGCCCCCCTTAGAAAGGG 42 55 1 CCCTACCCCC 0.956922 -200 GATTAAACGGCCAAAACTCGACTTTTGAAACA 54 63 0 CCAAACTCAC 0.828801 -185 GTTTAATCCCCCCTAGCCCCCCTTGGGAAGGG 54 87 1 CCCTACCCCC 0.956922 -161 GTTGCCGAGGCCAAACCTCAGCAGTTGCCCTT 55 57 1 CCAAACTCGC 0.789879 -86 GGTTAATCTCCCCTAACCTTCCTTGATTCCGA 55 97 1 CCCTACCTCC 0.927045 -46 GGCGATCGGCCCAAAGCCTCACTCCACAACGG 82 51 1 CCAAACCTAC 0.85807 -62 TCCAGGCCCTCCCAATCCTGACAGTGGCAAGG 84 153 0 CCCAACCTAC 0.924528 -42 GTCTCGCCCCCCCTAGCCTGACCTCTGACCAA 94 39 0 CCCTACCTAC 0.886838 -59 ACCCATAATTCCCAACCCCTACCCGTTGACCC 99 63 0 CCCAACCCAC 0.955387 -211 GAAATTTCCCCCCTAACTCTACGTCCATGGGG 102 137 0 CCCTACTCAC 0.862551 -115 CCCTTGGCCACCAAACCTTGGCTAAGTCGATG 105 17 0 CCAAACTTGC 0.682574 -284 TGGCTCAAATCCCAACCTTGCCAAGGATTAGA 105 140 0 CCCAACTTCC 0.900972 -161 AGGAAAAATTCCCAACCCTGTCCTGGTCGATT 105 214 1 CCCAACCTTC 0.822612 -87 GAAAAATTGCCCAAAGCCCAGCCTACCATCGT 117 42 1 CCAAACCCGC 0.891384 -146 GTTTAATCCCCCCTAGCCCCCCTTGGGAAGGG 118 165 0 CCCTACCCCC 0.956922 -136 GATTAAACAGCCAAAACTCAACTTTCCAAACA 118 189 1 CCAAACTCAC 0.828801 -112 ACAAAATTTTCCAACACCTTCCCAATTAATTT 126 41 0 CCAACCCTCC 0.764372 -40 TACAGACCATACCCCGACACCGTTGCCG 128 121 0 CCATACCCAC 0.871158 -18 GCAAATTTGACCAAAACTCAACAGTAATCCTG 153 46 0 CCAAACTCAC 0.828801 -187 AACTTTTGCTCCAAAACCTCCCCCCGGCGATC 153 147 0 CCAAACCTCC 0.907431 -86 CTTAGAAACTCCCACTCTTGTCCAGGAATCTT 184 79 0 CCCACCTTTC 0.41278 -222 AAAAGGTGAGCCAAAACTCACCTCTCTACTTT 187 46 0 CCAAACTCCC 0.887001 -201 ACCCGTAATACCAAAGCCTTTCTCCTAAATTT 188 149 0 CCAAACCTTC 0.695926 -152 CGACTAATACCCATAGCTCAACTAACCAT 191 17 1 CCATACTCAC 0.755926 -19 TAGAACGGAACCAACCCCCAACTTCCCCCAGT 199 43 0 CCAACCCCAC 0.777655 -49 CCTTTTTTTTCCCAAGCTTTCCTTCGTTATTT 201 26 0 CCCAACTTCC 0.900972 -87 TAGCGCTTTTCCATCCCCCTAC 207 53 1 CCATCCCCAC 0.691122 -12 TTCAAAGTCCCCCAAACTTGCCGGAGCTTTAG 208 166 0 CCCAACTTCC 0.900972 -71 TTAAATGCTCCCCTAGCCCCCCAATTCTGGGG 208 207 0 CCCTACCCCC 0.956922 -30 GATTAAACAGCCAAAACTCAACTTTTTAAACG 217 89 0 CCAAACTCAC 0.828801 -212 GTTTAATCCCCCCTAGCCCCTCTTGGAAAGGG 217 113 1 CCCTACCCTC 0.838353 -188 TATTGAAGTTCCAACGCCCAGCCAGAT 227 74 1 CCAACCCCGC 0.73088 -17 GGAACTAACCCCCAAACTCAACTGCTTGAAGC 229 97 1 CCCAACTCAC 0.907487 -92 TGGAAAAGCTCCCAAACTTGGCAAAAATGAGA 230 112 1 CCCAACTTGC 0.813331 -111 TACCCAAGCTCTCCTATTACCTCC 241 287 0 CCCAACTCCC 0.940846 -14 TCCACACACGCCCTATCCTGTCGGC 246 4 0 CCCTACCTTC 0.747903 -255 CGAATATCTGCCATCCCCCGACGATGGCACCA 256 25 0 CCATCCCCAC 0.691122 -52 AAGGCGATCGCCAAATCCTTGCCATTATTGTT 260 29 0 CCAAACCTGC 0.824392 -65 ATTATCGCTCCCATCACCTCGCAAACTGACCT 265 189 1 CCATCCCTGC 0.498462 -67 GCCCATTTAGCCCAAGCCCACC 284 24 1 CCCAACCCCC 0.972007 -12 AAGCGAAGATCCCTATCCTTACTTTGCCTAGC 294 184 1 CCCTACCTAC 0.886838 -117 AGTCTTTGACCCCACTCCTCCCCCTTGGGTTG 300 187 0 CCCACCCTCC 0.867952 -114 CCGAATTTTTCCATCCCTTACCCATGCCAGAA 300 228 0 CCATCCTTCC 0.487342 -73 AATTAACCGTCCCTAACTTAACTTTCCCATTG 301 210 0 CCCTACTTAC 0.782122 -91 AGAGTTTTGACCCTAACTCCCCCGTTCCTGTC 301 260 1 CCCTACTCCC 0.910517 -41 TTTAAATTTGCCATATCCTAGCGGTTTTTCTC 309 54 1 CCATACCTGC 0.750206 -247 GGGAAAAGTCCCCTAGCTTCTCAACTTTGAAG 310 133 0 CCCTACTTTC 0.576079 -29 TGGACTTTCGCCCTAGCCCGCCGGGAAACCAA 315 97 0 CCCTACCCCC 0.956922 -47 ***** *** ** Masking position 7 Map Score: 65.1499 Number of sites scoring better than the average of aligned sites = 1037 Number in coding regions = 912 Number in noncoding regions = 125 Number of orfs with sites within 600 bp upstream = 129 Fraction of orfs with sites within 600 bp upstream = 0.0207196 Motif number 4 CAACCGTTAACCCAGGGCAAGCACTGGATG 2 13 0 CCCAGGGCAA 0.744184 -74 CATTGACGAACCCTGGGCCGACCAAAGGTT 8 52 0 CCCTGGGCCG 0.872261 -76 TTTTCTGGCGGCAATGCCAAACTTTGCCCA 14 89 1 GCAATGCCAA 0.344 -212 CTAATCCCAACCATGGCGCACCGAGCGATC 14 158 1 CCATGGCGCA 0.590388 -143 TTGCCATAGTCCCATGGCCAATCCCCAAAG 15 112 1 CCCATGGCCA 0.860539 -32 CTTCTTTTAAGCCTTGCCAACCGTACTAAC 16 131 1 GCCTTGCCAA 0.708003 -25 GCAGAGTCAGCCCAGGGGACAAAAACTTCC 26 63 0 CCCAGGGGAC 0.547961 -38 AGGGTATTTAGCCTGGGGCAGTATGGGGCA 29 48 1 GCCTGGGGCA 0.771517 -64 CCATTGGCTAGCCATGGGAAGCTAAAATAC 31 170 0 GCCATGGGAA 0.526797 -97 CTGCCTTGCCAAATTTGTCTAA 31 255 0 GCCTTGCCAA 0.708003 -12 GGCGTTGATCCCCTGGCCAGAATTTTGATT 36 97 1 CCCTGGCCAG 0.652317 -66 CCACCAAAGCCCATTGGGCACCGGATAATT 37 215 0 CCATTGGGCA 0.814624 -23 AATTAACGCTGCCTGGGCAGGACAAAGGGC 40 55 0 GCCTGGGCAG 0.707208 -20 CGACTAAAAGCCCTTGCGACAAAGCATTGA 43 134 1 CCCTTGCGAC 0.642225 -167 TTTAGCCATCCCATTGGGCAAAGAACGATG 52 57 0 CCATTGGGCA 0.814624 -55 CCCCTAGCCCCCCTTGGGAAGGGAGGAAAT 54 96 1 CCCTTGGGAA 0.83404 -152 ACTTTTCGACCCATGGGGAATTAACCAAAA 55 11 0 CCATGGGGAA 0.674453 -132 ATAGGTTGCTCCATTGGCCAACCTATGCTC 63 28 0 CCATTGGCCA 0.896003 -116 CCCCTTAATTGCCTTGCCCCCTAATCTCAA 78 76 1 GCCTTGCCCC 0.759159 -32 ACCGTCCTTTCCCTTGGGAAGGCCAAATGG 80 13 1 CCCTTGGGAA 0.83404 -123 GTGCAAAGTACCCTTGCCAACGCCCTCTAC 84 45 1 CCCTTGCCAA 0.811598 -150 CTGCATTAGTCCCTGGGCAGTTTCCGGCCA 84 75 1 CCCTGGGCAG 0.81101 -120 TTGGCGATCGCCATTGGCCGGAAACTGCCC 84 89 0 CCATTGGCCG 0.833387 -106 GAGCCGCTGGGCCTTGCCACTGTCAGGATT 84 142 1 GCCTTGCCAC 0.664531 -53 GATTTTTCCCTGGGCAACTATGCGGTC 85 8 1 CCCTGGGCAA 0.880833 -135 CTTCCCGGAGGCAATGGCAATTTTTCTTTG 94 78 0 GCAATGGCAA 0.545332 -20 CATAAGGAAGCCAATGCCCCAGAAATAATT 101 51 0 CCAATGCCCC 0.547748 -171 GCGAGAGTTACCCTTGGCCACCAAACCTTG 105 29 0 CCCTTGGCCA 0.940043 -272 GCGGGCATTAGCAATGGGCCCACTCTTTCT 107 28 1 GCAATGGGCC 0.442987 -87 CTTCCAACCAGCCTTGGCCATGAAGGTTAA 111 202 0 GCCTTGGCCA 0.898217 -99 TCAAAAGCCCCCCTGGCCCCCAAGTTTGGG 118 14 1 CCCTGGCCCC 0.807736 -287 CCCCTAGCCCCCCTTGGGAAGGGGGGAATT 118 158 0 CCCTTGGGAA 0.83404 -143 GTCTCGGGTTCCATTGCCCGTTCTTTGCCC 125 24 0 CCATTGCCCG 0.686214 -172 ATGGAGATATGCCATGGCCAAACTGCCAA 128 10 0 GCCATGGCCA 0.776442 -129 CTTGAAATTTCCAATGCCCCGCTTGCCAAA 131 44 0 CCAATGCCCC 0.547748 -166 TTCACCCCGGCCCTGGGCACGGGGTATTTT 131 137 0 CCCTGGGCAC 0.857929 -73 GCCTTGTTGACCAATGCCCCACCACTACCC 141 28 0 CCAATGCCCC 0.547748 -99 GTTGATAGTTGCAATGGCAAGAA 141 114 1 GCAATGGCAA 0.545332 -13 AGGATTTTATCCATTGGGCGGAGCATACTT 146 73 0 CCATTGGGCG 0.718409 -228 GGCCATAGACGCAATGCCCATAATTCCCCA 148 88 1 GCAATGCCCA 0.454874 -98 TGAAAACTTAGCCTGGGGAATTATGGGCAT 148 101 0 GCCTGGGGAA 0.679697 -85 TTGAAAAGTCCCCTGGCCCCAAGCCTAGGG 149 82 1 CCCTGGCCCC 0.807736 -199 TCCTAGTCCCCATGGGCCACTGGGACTGG 155 10 1 CCATGGGCCA 0.866013 -150 GGAGGCTTTTGCCTTGGCACTAGTAACCGT 155 53 0 GCCTTGGCAC 0.819194 -107 TTGGTCAGCACCATGGCCCAACCCAGCTTG 155 125 0 CCATGGCCCA 0.738621 -35 CGTGAGGAGACCATTGGCCCT 177 2 0 CCATTGGCCC 0.875603 -281 GAACCTCGGGCCATTGCCCCCC 177 271 1 CCATTGCCCC 0.754746 -12 GTATTGGCCTCCATTGCCAATAATCCCAAG 179 74 1 CCATTGCCAA 0.70302 -227 AGTTTTCAGTCCATTGGCAACAGTGGGGGA 179 229 1 CCATTGGCAA 0.844101 -72 AAGACCAGTGGCCTTGGCAATGGCAAAAGT 180 109 0 GCCTTGGCAA 0.847231 -96 AACAAATTTCCCCTGGGGCCGGAGAGGAAA 180 138 0 CCCTGGGGCC 0.830542 -67 CTTATTTGGCGCCTTGGCAGGGGAAAAAGA 182 26 1 GCCTTGGCAG 0.763016 -57 TGTTGGGCAACCAATGGCCAGGGGTCTTTT 182 50 0 CCAATGGCCA 0.772252 -33 AAACGCCATTGCCTTGGCAGTTGGAATGCC 189 28 1 GCCTTGGCAG 0.763016 -82 AAAATTGTTTCCCTTGCCAATATTAGCCCC 196 45 1 CCCTTGCCAA 0.811598 -35 GGAGGAGCCAGCATTGCCCGCCGAAAACTG 198 167 0 GCATTGCCCG 0.551753 -118 GAAGCTGCCGCCATTGGCACGGGGATTTAC 198 214 1 CCATTGGCAC 0.815615 -71 TTTATCAAAACCATGGCGAGTAAATCCCCG 198 233 0 CCATGGCGAG 0.344634 -52 TGAGAAACTCCCCTGGGCAAAGGAGCCATA 201 76 0 CCCTGGGCAA 0.880833 -37 GGAGAGTCAGGCATTGGCCCTGGGGGGAGA 208 15 0 GCATTGGCCC 0.798462 -222 TCAATTGAAGGCATTGGCAAGATGGAAACC 211 136 0 GCATTGGCAA 0.752938 -165 CAGCTTCAAGCCCTGGGGAAAGGGAAGTCC 230 167 1 CCCTGGGGAA 0.790361 -56 AATCCTGATTGCATTGCCAAACATCCTCTC 232 25 0 GCATTGCCAA 0.571261 -227 CAGGGCTTTACCCATGGCCGAAAAATCGAG 237 102 0 CCCATGGCCG 0.781771 -175 TTCCCAGCTCCCATTGGCCATCAATTCCGT 241 92 0 CCATTGGCCA 0.896003 -209 CTATTGGCCAGCCTTGGCAATCAAAAATCC 245 48 1 GCCTTGGCAA 0.847231 -191 GGCAAAATCTGCCTGGGCACTGCTTCAAAA 245 100 0 GCCTGGGCAC 0.772674 -139 CTTCCCGTTGGCATGGGCCAGCTTCCTAAA 247 100 0 GCATGGGCCA 0.78439 -119 TCTTTCATTGCCCTTGGGAAAATTTCTTTG 258 103 1 CCCTTGGGAA 0.83404 -24 ATACCAAATTGCCTTGGCCCAGAGCTTTTG 264 64 0 GCCTTGGCCC 0.878192 -72 CTTCTATTGACCATTGCCCCTGGTCTACAG 266 172 1 CCATTGCCCC 0.754746 -129 TGAGGAAGAAGCCATGGCAACAGCCAATGA 267 64 0 GCCATGGCAA 0.685795 -153 CTGGGTTAAGCCAAGGGGAAGGTCTCAAAA 267 136 0 CCAAGGGGAA 0.449147 -81 GCCGGTTTTGCCATTGCGCCCCTTTCCCCC 269 106 1 CCATTGCGCC 0.610841 -29 CATGATTTTACCATTGGGAATTTCTTGCCT 274 56 1 CCATTGGGAA 0.734158 -211 AGCTGATGCCGCCTTGGGCCATGCCTTGGT 279 83 1 GCCTTGGGCC 0.786201 -218 CCAAATTTCCCCAATGGGCGGATTACTTAA 283 22 1 CCAATGGGCG 0.501016 -95 CTTAACCTAGCCAGGGGCATTTGGCGATC 283 98 0 GCCAGGGGCA 0.570621 -19 AGCATGACTCCCATTGGGCCAGATCTCCCC 286 81 0 CCATTGGGCC 0.782142 -100 AGATGCTTGACCAATGGGAACTAAGCCCGA 286 126 1 CCAATGGGAA 0.520815 -55 ACACTTTTCCCCCTGGGGAGCAGATAAGAA 290 72 1 CCCTGGGGAG 0.6864 -229 CTAGCAATAACCCTGGGGCAATTCTGATTT 294 211 1 CCCTGGGGCA 0.857126 -90 TTTGTTGTCCCCAATGCCAAGCTGGCCCCC 300 133 0 CCAATGCCAA 0.482309 -168 CCATCCCTTACCCATGCCAGAACCCCATGG 300 220 0 CCCATGCCAG 0.496038 -81 TTCCGCTGCTCCCATGGCCCGAGGGATTAT 301 24 1 CCCATGGCCC 0.834467 -277 GGGCATACCCCCAATGGCAGGGAGAGGTTA 303 110 0 CCAATGGCAG 0.552997 -86 ACTTAGGGAACCAAGGGGCGTTCAAACAAT 306 14 0 CCAAGGGGCG 0.42963 -100 ATTGAGGTTAGCATTGGCCAACCCTGGAAA 310 25 1 GCATTGGCCA 0.829043 -137 AGCGGCGATCGCCTGGGGCAATTTCGGTGT 312 17 0 GCCTGGGGCA 0.771517 -28 ********** Masking position 6 Map Score: 84.8608 Number of sites scoring better than the average of aligned sites = 4547 Number in coding regions = 4149 Number in noncoding regions = 398 Number of orfs with sites within 600 bp upstream = 362 Fraction of orfs with sites within 600 bp upstream = 0.0581433 Motif number 5 AAGGAAACGGCCCAAATTATCCAAGCCAGTTTCGCCC 7 13 0 CCCATACACC 0.715659 -288 AGAAATTCCCCCTACATCAGCCCATCCTCCCTGGGGT 10 32 1 CCTACACCCC 0.80868 -81 TCCTTTTTGTCCTAGCCTAGCCTGCCC 15 1 0 CCTATACTCC 0.751901 -143 GGCCGGATAACCCCATTTACCCTTTCCCAAAGCCAGA 31 132 0 CCCCTACTCC 0.746987 -135 AATCAACCTCCCCAATCCTAACAAGCCTGGAAAAGTT 34 71 1 CCCACTCACC 0.71123 -40 GCCGTTATTGCCGATTATTCCCCTGCCACTGGTAAGA 44 219 1 CCGATTCCCC 0.575502 -82 GCAAGAACTCCCTGTATTTTGCCTTCCCCT 46 81 1 CCTGTTCCCC 0.747702 -20 CCAGCACAAACCCAGACCAATCAGGCCCGAATAATAG 51 41 1 CCCACACACC 0.672958 -174 TCCTAATTATCCCAGGCCTCCCCCTCCATCAGGGGAT 51 175 0 CCCACTCCCC 0.938573 -40 CGTTTTTAGGCCCATACTTCACCTTCCTACAATCCCC 56 35 0 CCCATTCCCC 0.949211 -266 TCCTCCTGCCCCCTTAATTGCCTTGCCCCCTAATCTC 78 67 1 CCCTTTCTCC 0.536645 -41 GTAACCTCTCCCCGGCCTTCCCTAACCCCAACCACCG 79 32 1 CCCGTTCTCC 0.83991 -54 GCCCTTGGATCCGATTATAGTCCTTCCC 82 2 0 CCGATACCCC 0.5311 -111 ATTGGGAGGGCCTGGATTACCCCGTCCCCAACCTCC 84 169 1 CCTGTACCCC 0.712308 -26 GATCGCCTTACCCCAGACTAACTGGCCAGGTGTTGTC 91 154 0 CCCCCTCTCC 0.742871 -45 CGGGTTTGAGCCTGGATTAGGCCCACCTTTCTCCAAT 93 24 0 CCTGTACCCC 0.712308 -161 CATTGTCTCGCCCCCCCTAGCCTGACCTCTGACCAAA 94 38 0 CCCCTACTCC 0.746987 -60 TCGTCATAGCCCTGTCATACTCGTCCCCTACATTAAT 97 13 0 CCTGTACGCC 0.388924 -93 ATTGCCTTGACCCATAATTCCCAACCCCTACCCGTTG 99 67 0 CCCATTCACC 0.750785 -207 TGCGCTGTTTCCCTCGACAAGCTCCCCGCTTCTTCTT 120 86 1 CCCTCACTCC 0.441676 -134 GTGCAAGAATCCTAATTTTCTCCTCCCTAATTCTGGG 133 21 0 CCTATTCCCC 0.860886 -40 CCCACCACTACCCGCTATTACCCCGCCGCT 141 4 0 CCCGTTCCCC 0.899499 -123 CCTTTTTGTCCCTACTTTTTGCTGACCACATTCAAGG 146 27 1 CCTATTCTCC 0.783902 -274 ATCAAATTTACCTGGTTTAGGCTCTCCCAATCATCTT 163 238 1 CCTGTACTCC 0.592064 -63 ATAAATGTAACCCAATTTCCCCCAGCCGTAACCTTTA 169 151 1 CCCATCCCCC 0.866844 -101 AGGGATTACACCTGGGTCAAGCTTACCGGACTTGTGG 177 73 1 CCTGCACTCC 0.542664 -210 AAAATATTCCCCCAAAGTTTTCAGTCCATTGGCAACA 179 214 1 CCCATTCACC 0.750785 -87 GAACTACCTTCCTACATTTGCCCTTCCCCAATTTGAC 180 12 0 CCTATTCCCC 0.860886 -193 TTTGTTTTACCCCAATCCATTCTCCCCGAAGAATTTC 180 162 1 CCCACACTCC 0.882116 -43 ACTGTTTCCGCCCAATAAACTCCTCCCCACCAGCCAA 194 35 0 CCCAAACCCC 0.387656 -266 CTGAACGGTTCCAATGCTAAGCCTCCCTGACAATGGG 194 242 0 CCAATACCCC 0.293414 -59 TAATGCCCTGCCTAACCCAAGCGAGCCAATCTTGGTT 200 19 1 CCTACACGCC 0.520739 -79 TTTGCCCATCGTTTCCCGCCCATCGTTCATA 216 5 1 CCCATTCCCC 0.949211 -57 AGTTTCTGTACCCGTTTTTCTCTACCCTGATCCAGGA 218 233 1 CCCGTTCTCC 0.83991 -38 GTACCCTGTACCCAAGTCAGTCTAACCGTGGTCGGAG 222 11 0 CCCACACTCC 0.882116 -102 CCCTAACCGACCCATTGCTCCCTTGCCCT 249 3 0 CCCACTCTCC 0.899565 -155 AATCTCTATGCCCCATCTCAACTTGCCTGATATGTTT 249 61 0 CCCCTCCTCC 0.551757 -97 TTTTTTCTGGCCCATGACCAACCGTCCCGTCCCATCG 255 88 0 CCCACCCCCC 0.84183 -90 AATTTTCCTCCCGTTGCCTTTCCTTTCTTTAGG 261 105 0 CCTCTTCTCC 0.539194 -23 ATCACCCCGTCCCAGCTTTGGCCAGCCTGGCTATCCA 279 25 0 CCCATTCCCC 0.949211 -276 AATTTCTCTTCCCAGTTTTTGCTCCCC 280 1 0 CCCATTCTCC 0.916356 -170 CGGAAGCAAACCCAGGGTTTTCGATCCAATCATAGCG 280 94 0 CCCATTCGCC 0.827711 -77 CGGCAAAAACCCTATGCCCCCCGTCCCAACCTGTACA 290 177 0 CCTACCCGCC 0.311776 -124 CACCGTTGTCCCCATTTTTGACCCGCCCCAGAATTT 293 211 1 CCCATTCCCC 0.949211 -26 GCCAAGCTGGCCCCCGTCAGGCCCTCCGGGCTTGGAT 300 111 0 CCCCCACCCC 0.804598 -190 AATTAACCGTCCCTAACTTAACTTTCCCATTGTCCAT 301 205 0 CCCTTTCTCC 0.536645 -96 GAGTTTTGACCCTAACTCCCCCGTTCCTGTCCCCTTG 301 261 1 CCTACCCGCC 0.311776 -40 TGCCAATGATCCCATACTTACCCTGCCCTGGTTTGGA 320 155 1 CCCATTCCCC 0.949211 -146 TATCCTTGTCCCTAGACCAATCTCACCTTGGCTAATA 320 260 0 CCTACACTCC 0.712456 -41 **** ** ** ** Masking position 12 Map Score: 46.0267 Number of sites scoring better than the average of aligned sites = 739 Number in coding regions = 664 Number in noncoding regions = 75 Number of orfs with sites within 600 bp upstream = 84 Fraction of orfs with sites within 600 bp upstream = 0.0134918 Motif number 6 AATTGAGGGTTTGCCCGACTTTTTGGGCATCGGCT 7 94 1 TTGCGATTTG 0.976498 -207 TCCCCCAACCTTGCCGGAGCTTTAGTGAAAATAGT 14 208 0 TTGCGATTTG 0.976498 -93 TCCGCATTTACTGTCAGACCTTTAGCTAAGCTTTT 24 130 1 CTGCGATTTG 0.884905 -66 TCCTCTAGTATTGCCGGAGCTTTAGTGAGGAGATT 32 180 1 TTGCGATTTG 0.976498 -121 ACCCCCAGTATTGCCGGAGCTTTAGTGAGGAGATT 42 104 1 TTGCGATTTG 0.976498 -151 TTGGACTAAATTGACAGCATTTTTGGCCGGATTTT 46 13 1 TTGCGCTTTG 0.798876 -88 TTGGTGTTTATTGTCACAGGTTTTGGTGAGCTGGC 56 188 0 TTGCCATTTG 0.731054 -113 CTCAATGGTTTTGCCAGATTGTTTGAATAATGACT 83 33 0 TTGCGAGTTG 0.884905 -66 GCGCAACAAATTGACGTAGGTTTTGTTCAGTAAAT 83 72 0 TTGCTATTTG 0.763818 -27 TCCCCCAGTATTGCCGGAGCTTTAGAAAGTGTTTG 118 61 1 TTGCGATTTG 0.976498 -240 ATTTCATTACTTGGCTGATTTTTTGATCATACTAA 140 41 1 TTGCGATTTG 0.976498 -260 TTCTGCAGGGTTGCCAGAGCTTTGGTAGGAAAATT 149 126 1 TTGCGATTTG 0.976498 -155 CCTTTGTCCATTGACAGACGGTTAGCGCAGGTAGG 149 182 0 TTGCGAGTTG 0.884905 -99 TCTCCCAGAATTGCCGGAGTTTAAGTGACAAGGAT 168 91 1 TTGCGATTAG 0.748283 -107 TATGGATAAATTGGCTGAAATTTAGG 176 2 0 TTGCGATTTG 0.976498 -48 GTTGGTCTGACTTTTGGGGCTAAACTC 204 36 0 TGGCGATTTG 0.798876 -17 TCCCCCAAACTTGCCGGAGCTTTAGTGAGGAGATT 208 156 0 TTGCGATTTG 0.976498 -81 TAGTTAATATTTGTCTGAAATTCAGTTTAATTCTC 252 43 1 TTGCGATTCG 0.890211 -87 CTATCTTTAATTGACTTAAGTTTAGAACTAAAAAG 266 22 0 TTGCTATTTG 0.763818 -279 TTACCTAGTATTGCCCGAGCTTCCGTGGGTCGTTT 271 122 1 TTGCGATTCG 0.890211 -179 GAAAGCCTCCCTGGCAGAAGTTTTGGGAGATTAGC 274 182 0 CTGCGATTTG 0.884905 -85 *** * ** *** * Masking position 12 Map Score: 25.4035 Number of sites scoring better than the average of aligned sites = 49 Number in coding regions = 14 Number in noncoding regions = 35 Number of orfs with sites within 600 bp upstream = 28 Fraction of orfs with sites within 600 bp upstream = 0.00449727 Motif number 7 GGCGATGGAAAAAGGGTTTGAAAAGCGAAATTCAA 9 13 1 AGTTTGAAAG 0.963294 -190 ATCCCCTGAGAAGGTGTTTGGAAAGTTTTATTCTG 32 222 0 AGTTTGAAAG 0.963294 -79 TCCCCACTGGAAAGTGTTTGAAAAGTGCAAGGCTA 54 184 0 AGTTTGAAAG 0.963294 -64 GCTTACACCGACTCAGTTTGGCAAGAATTATTGAA 102 218 1 AGTTTGCAAG 0.73565 -34 GGAGCTTTAGAAAGTGTTTGAAAAGTGCAAGGCTA 118 76 1 AGTTTGAAAG 0.963294 -225 CCTCGCTAAGAGCATGTTTGGAAAGTTGAGTTTTG 118 200 0 AGTTTGAAAG 0.963294 -101 CATCCCCAAGAATTTGTTTGAAAAGTTTTATTTTG 118 247 0 AGTTTGAAAG 0.963294 -54 CAAGTTTTCTAAACAGTTTGCAAAATAGCTATTCA 158 15 1 AGTTTGAAAA 0.683693 -37 AGTCTGTTTAAAAAGTCTAAAAATT 205 221 0 AGTTTAAAAG 0.683693 -15 AAACAAACTGACTTAGTTTGCAAAGAA 209 3 0 AGTTTGAAAG 0.963294 -158 AAACTAAGTCAGTTTGTTTGGAAAAGTCCCCCAAC 209 19 1 AGTTTGAAAA 0.683693 -142 TTGCCCCGAGAAAGCGTTTAAAAAGTTGAGTTTTG 217 75 1 AGTTTAAAAG 0.683693 -226 TTCCTCTCAGAACGTGTTTGAAAAGCGCAAGACTA 217 199 0 AGTTTGAAAG 0.963294 -102 TTGTCAGCTTATTTTGTTTGCAAAGGAATTTTTTT 232 64 0 AGTTTGAAAG 0.963294 -188 AATCCCTTAGAAAGTGTTTGAAAAGTT 238 158 1 AGTTTGAAAG 0.963294 -17 TTCACTCTAAAGTTTGTTTGAAAAGTCCCCTCCTC 271 61 1 AGTTTGAAAG 0.963294 -240 AATTTTTCAGAATTTGTTTGCAGAGTTTTATTCTG 271 164 0 AGTTTGAGAG 0.73565 -137 AACCAAGGAAATGCCGTTGGTAAAGATCACACAGA 278 166 0 AGTTGGAAAG 0.73565 -57 TTTCTGTTAGAGCGTGTTTGAAAAGTAGGGTGAAG 298 235 1 AGTTTGAAAG 0.963294 -66 * ***** **** Masking position 8 Map Score: 23.4673 Number of sites scoring better than the average of aligned sites = 129 Number in coding regions = 21 Number in noncoding regions = 108 Number of orfs with sites within 600 bp upstream = 72 Fraction of orfs with sites within 600 bp upstream = 0.0115644 Motif number 8 TTTCACTAAAGCTCCGGCAAGGTTGGGGGA 14 213 1 GCTCCGGCAA 0.987846 -88 GGAAAGGAGCCCTCCGGCAAACGTGATATA 25 81 1 CCTCCGGCAA 0.968186 -84 CTAAATAAAAGCTCCGACAATATTAAAGGG 27 26 0 GCTCCGACAA 0.890221 -146 CTTGTGCGGCCCTCCGGCAACATTGACCCC 32 54 1 CCTCCGGCAA 0.968186 -247 CCTCACTAAAGCTCCGGCAATACTAGAGGA 32 180 0 GCTCCGGCAA 0.987846 -121 CCTCACTAAAGCTCCGGCAATACTGGGGGT 42 104 0 GCTCCGGCAA 0.987846 -151 AACCAACCCTGCCCCGGCAAATCAACGGAA 43 210 1 GCCCCGGCAA 0.916857 -91 GTTCTTTATGCTCTGGGAATCCCGATCGC 48 10 1 GCTCTGGGAA 0.678447 -82 ATTGCCATTGCCTCCGGGAAG 94 87 1 CCTCCGGGAA 0.880385 -11 ACTTTCTAAAGCTCCGGCAATACTGGGGGA 118 61 0 GCTCCGGCAA 0.987846 -240 TCCTACCAAAGCTCTGGCAACCCTGCAGAA 149 126 0 GCTCTGGCAA 0.897162 -155 TGTCACTTAAACTCCGGCAATTCTGGGAGA 168 91 0 ACTCCGGCAA 0.853622 -107 CCTCACTAAAGCTCCGGCAAGTTTGGGGGA 208 161 1 GCTCCGGCAA 0.987846 -76 ACCCACGGAAGCTCGGGCAATACTAGGTAA 271 122 0 GCTCGGGCAA 0.87999 -179 ACGGAACTCCCCACCGGCAAAAACCCTATG 290 198 0 CCACCGGCAA 0.735866 -103 TTTTTAACTAGCTCCGAGAATTACTCCGGC 294 43 0 GCTCCGAGAA 0.662301 -258 ********** Masking position 9 Map Score: 22.5258 Number of sites scoring better than the average of aligned sites = 146 Number in coding regions = 117 Number in noncoding regions = 29 Number of orfs with sites within 600 bp upstream = 20 Fraction of orfs with sites within 600 bp upstream = 0.00321234 Motif number 9 CCCCTGTCCTAGAATGGGGAAATTAGCAGA 32 17 0 AGAATGGGGA 0.637302 -284 GGCGTAACTTAAACTGGGGATAAACCAGCT 41 78 0 AAACTGGGGA 0.740608 -118 CCCCCCTTAGAAAGGGGGGAACTCTTACAA 42 71 1 AAAGGGGGGA 0.76773 -184 GGCCTTACCGAAAACGGGGAAAAAATTTGA 54 11 1 AAAACGGGGA 0.718247 -237 ACATAGGCACAAAAGGGGGATGACCGCAAT 77 81 0 AAAAGGGGGA 0.893268 -220 GGACGAGGATACATGGGGGACAAGTTTCCC 84 14 0 ACATGGGGGA 0.639851 -181 AATACAATGCAAAATGGGGATCTTCTTCGA 91 25 1 AAAATGGGGA 0.904724 -174 GTGACCCCTTAAAATGGGGAATAAGTAGGC 116 141 0 AAAATGGGGA 0.904724 -160 ATCCCCTTTAAAAAAGGGGACTTTTGCGAC 118 128 1 AAAAAGGGGA 0.839104 -173 GTCTAGGAAAAAACAGGGGAAAGAATGCCC 128 78 0 AAACAGGGGA 0.610606 -61 AATTGCAGTGAAAACGGGGAGTTAAAATTT 145 76 0 AAAACGGGGA 0.718247 -68 CCGTAATCGCAAAAAGGGGAAACGCTGTTC 167 35 1 AAAAAGGGGA 0.839104 -62 AGTCAAATTGGGGAAGGGCAAATG 180 5 1 AAATTGGGGA 0.744436 -200 ACAGAGGGGAATTGCTCCAC 188 291 0 ACAGAGGGGA 0.587679 -10 AGCCTCCCTGACAATGGGGACAAAACAGGC 194 230 0 ACAATGGGGA 0.867919 -71 CCCCTCTTGGAAAGGGGGGAACTGTGACAA 217 129 1 AAAGGGGGGA 0.76773 -172 ATCCCACTTAAAAAGGGGGACCTTTGTCAC 217 152 0 AAAAGGGGGA 0.893268 -149 GTCTCTTGCTACACTGGGGAGCGGACTTGG 224 33 1 ACACTGGGGA 0.663955 -78 CGTTGCTTAAAAATTGGGGAATTTATTTAT 242 49 1 AAATTGGGGA 0.744436 -39 TCAGAACAATGGGGAAGACATAAAT 242 73 0 ACAATGGGGA 0.867919 -15 TAGTCAGAATAAATAGGGGAAGGTATCGCT 247 193 0 AAATAGGGGA 0.615356 -26 CGCTCCTGAAAAAAGGGGAGGAAGAATGG 255 10 1 AAAAAGGGGA 0.839104 -168 AAGTCCAGATAGAATGGGGAGCCGATCGCC 261 70 1 AGAATGGGGA 0.637302 -58 CCCTACTCAAACAAGGGGGAGATTTAACTG 266 87 1 ACAAGGGGGA 0.852759 -214 ACGCCACTAAAAATTGGGGAGCTTTTGCCT 266 251 1 AAATTGGGGA 0.744436 -50 AAAGCATGGGACAGAGGGGAAAAGCTCTCC 275 253 0 ACAGAGGGGA 0.587679 -48 ATTGAGATGGAAAAGGGGGAATGTCTAGTG 279 263 0 AAAAGGGGGA 0.893268 -38 GGGCGGGTCAAAAATGGGGACAACGGTGGC 293 209 0 AAAATGGGGA 0.904724 -28 TAAACCTTTTACAATGGGGACTAGCACCTA 317 41 1 ACAATGGGGA 0.867919 -111 ********** Masking position 3 Map Score: 31.8819 Number of sites scoring better than the average of aligned sites = 168 Number in coding regions = 126 Number in noncoding regions = 42 Number of orfs with sites within 600 bp upstream = 47 Fraction of orfs with sites within 600 bp upstream = 0.00754899 Motif number 10 ACAAAAATAACTCATTGTCCCCAGACAACAA 3 9 0 CCATTCCCCA 0.786132 -292 AATTATCCAAGCCAGTTTCGCCCAC 7 3 0 GCAGTCGCCC 0.862695 -298 TTTATTGCCCCTCTTTCACCCCCAACTTA 11 80 1 CCTTTCCCCC 0.792096 -19 GGCAAAGTTTGGCATTGCCGCCAGAAAAGCTGA 14 84 0 GCATTCGCCA 0.364342 -217 GATCACTAAAGCCTTTGTCCCCCAACTATTTTC 14 184 1 GCTTTCCCCC 0.810626 -117 AGGACTTTCAGTCAGTTTCCCCCTAAATTTGGG 32 151 0 GCAGTCCCCC 0.978388 -150 GGCGCATTACCCCCCAGGGATGGAA 36 3 1 CCATTCCCCC 0.96402 -160 AATCCCGATCGCCAGTCCCGGCCAACATGGGAT 48 28 1 GCAGTCGGCC 0.57977 -64 ACAACTCCGGCCCAGTGTCGCCCCCCAGGCGAT 58 201 1 CCAGTCGCCC 0.848307 -100 ATAAGGCAAAGAAAGTTTCCCCCATAAGGAAGC 101 70 0 GAAGTCCCCC 0.798436 -152 AGCTTATCCGGAAATTTCCCCCCTAACTCTACG 102 146 0 GAATTCCCCC 0.72482 -106 AAAAAGCGTGGCCAGTTCCCCCAATTTCGCTCT 109 55 1 GCAGTCCCCA 0.861319 -45 GGGAAATATTCTCATTATCCGCCACGATCGCCG 117 101 0 CCATTCCGCC 0.85472 -87 GGACTTTTGCGACAATTCCCCCCTTCCCAAGGG 118 145 1 GCAATCCCCC 0.938941 -156 CCGTCATCACCCCCCAGAACGAACC 127 20 0 GCATCCCCCC 0.769004 -15 GTGAATTGATCCCATTCACCCCCCATCTAGCTA 129 190 0 CCATTCCCCC 0.96402 -111 ATAAATGTAACCCAATTTCCCCCAGCCGTAACC 169 151 1 CCAATCCCCC 0.931911 -101 AACCTTTATCCACAATTTCCCCCGATTATTAAC 169 180 1 CCAATCCCCC 0.931911 -72 GGAACCTCGGGCCATTGCCCCCC 177 270 1 GCATTCCCCC 0.967849 -13 TTTTTAAGAGCACTGTTTCCGCCCAATAAACTC 194 50 0 CCTGTCCGCC 0.557154 -251 GGAACCAACCCCCAACTTCCCCCAGTCAGGGAA 199 36 0 CCAACCCCCC 0.602167 -56 GGACCTTTGTCACAGTTCCCCCCTTTCCAAGAG 217 132 0 CCAGTCCCCC 0.975783 -169 GCACAACTTTCTCAGTTAACCCCA 226 122 1 CCAGTACCCC 0.493606 -14 TTCTAGCCCAGCCAGTGTCCCCCAGTCTACTCA 245 174 1 GCAGTCCCCC 0.978388 -65 GAAAGGTTAAGAAATTAACCCCCGGTTGTCTTT 248 170 0 GAATTCCCCC 0.72482 -88 GATCATCCCGCTCAATCGCCCCACTAAAATCCC 266 57 1 CCAATCCCCA 0.6525 -244 ACTGGATGACGGCATTGACCGCCCAACTACTAG 279 134 0 GCATTCCGCC 0.868581 -167 CCGGCAAAAACCCTATGCCCCCCGTCCCAACCT 290 182 0 CCTATCCCCC 0.660582 -119 TCATCGGCCCCATTCACCCCATTGGTAAACT 300 280 0 CCATTCCCCA 0.786132 -21 CGGTAAAGTTGTCATTTACCCCCTAAATTCCCC 306 76 0 GCATTCCCCC 0.967849 -38 TTTAAAGTTTGTCAGTTTCCCCCAACTTCAAAG 310 108 1 GCAGTCCCCC 0.978388 -54 ACTCCTTCACCCCAGTCACCCCAGATTCT 316 7 0 CCAGTCCCCA 0.846812 -39 ATCCCATTATGAAAGTTGCCGCCTGGATCGGCG 319 38 1 GAAGTCCGCC 0.465186 -74 CAACTTTTTCGCCAATCCCCGCCTCAGCAATAT 320 62 1 GCAATCCGCC 0.771513 -239 * **** ***** Masking position 12 Map Score: 42.2139 Number of sites scoring better than the average of aligned sites = 643 Number in coding regions = 565 Number in noncoding regions = 78 Number of orfs with sites within 600 bp upstream = 75 Fraction of orfs with sites within 600 bp upstream = 0.0120463 Motif number 11 CGCCGACACTGGGCGGTTTTTCTCTAGCTTAA 14 123 1 GGGCTTTTTC 0.904766 -178 AAAAACCAGCGGGCCTTTTTTTGTTGGATGGT 23 56 1 GGGCTTTTTT 0.820814 -27 GTTTGCCGGAGGGCTCCTTTCCATCACGAAAA 25 71 0 GGGCCTTTCC 0.839265 -94 TTTATGTCCGGGGAGCCTTTCTGCTTGTTTAT 77 250 1 GGGACTTTCT 0.588757 -51 TTGTTTTAGAGGGCTTTTTTTTGTAT 97 90 1 GGGCTTTTTT 0.820814 -16 TTCCTTATGGGGGAAACTTTCTTTGCCTTATG 101 72 1 GGGACTTTCT 0.588756 -150 GGACAGGGTTGGGAATTTTTCCTAGGATGGGA 105 205 0 GGGATTTTCC 0.885514 -96 CGTTGTTTTTGGGTATTTTTCCATACCCCCCG 106 52 0 GGGTTTTTCC 0.833316 -161 GCTGGGCTTTGGGCAATTTTTCCCAATAGTCT 117 32 0 GGGCTTTTTC 0.904766 -156 AAGTTCTTCGGGGCTTCTTTTTTGTTGCTCAC 120 173 0 GGGCCTTTTT 0.637472 -47 CCCTTTGTTTGGGCTATTTTTTAGGGATGGAT 128 49 0 GGGCTTTTTT 0.820814 -90 CCTAATTCTGGGGAGATTTTTT 133 1 0 GGGATTTTTT 0.7226 -60 GTTAGAATACGGGATGTTTTCTGTGACAAGGT 134 35 1 GGGATTTTCT 0.788565 -26 GGTGATGCCGGGGTATTTTTTTGACCGTCTGA 156 22 0 GGGTTTTTTT 0.62737 -185 CAATGGCCAGGGGTCTTTTTCCCCTGCCAAGG 182 37 0 GGGTTTTTCC 0.833316 -46 GCGATCGCCAGGGTGGTTTTCCCCTATCGATG 195 107 1 GGGTTTTTCC 0.833316 -118 GAACGAGTTGGGGGACTTTTCCAAACAAACTG 209 28 0 GGGGTTTTCC 0.709616 -133 TCCAATTAAAGGGTCTTTTTTCCAGGTGTTTT 219 132 0 GGGTTTTTTC 0.777371 -22 TGCCAAGTTTGGGAGCTTTTCCACCCTTGGTC 230 103 0 GGGATTTTCC 0.885518 -120 TCATTTTAAAGGGCTTTTTTTCTCTTTATAAC 240 65 0 GGGCTTTTTC 0.904766 -59 TGATGTTCGGGGGATTTTTTCTGGCCCATGAC 255 107 0 GGGATTTTCT 0.788565 -71 GTAAAGGTAAGGGCTATTTTTTAGGATAAA 256 57 1 GGGCTTTTTT 0.820814 -20 AATCGGTAACGGGCGATTTTTCCTAGGTTTAG 263 43 1 GGGCTTTTTC 0.904766 -160 TCTTCCTCAGGGGAAATTTTTTCTGGGCCATG 267 85 1 GGGATTTTTT 0.7226 -132 AATGGGCGATTTTCTCGATAGCTTG 268 102 0 GGGCTTTTCT 0.8677 -15 TTTGTAGGTTGGGATTCTTTCCTTTTCGCCAT 272 66 0 GGGACTTTCC 0.74806 -47 ACTTCTGCCAGGGAGGCTTTCCATGGCTAACC 274 196 1 GGGACTTTCC 0.748059 -71 CTTTATGTCGGGGTCATTTTTCGCAATCAGGC 296 80 1 GGGTTTTTTC 0.777371 -70 GCGATATTTTGGGAGATTTTTCCAATATTACC 305 72 0 GGGATTTTTC 0.84381 -37 CCATCAAAATGGGCAATTTTTTGGCCGAACCA 309 85 1 GGGCTTTTTT 0.820814 -216 TGATTAACCAGGGTATTTTTTCTCTTGCTTTG 309 220 0 GGGTTTTTTC 0.777371 -81 TGAGAAGCTAGGGGACTTTTCCCCTGCCCT 310 142 1 GGGGTTTTCC 0.709616 -20 **** ****** Masking position 8 Map Score: 36.4774 Number of sites scoring better than the average of aligned sites = 303 Number in coding regions = 232 Number in noncoding regions = 71 Number of orfs with sites within 600 bp upstream = 82 Fraction of orfs with sites within 600 bp upstream = 0.0131706 Motif number 12 GTTTTTAAACCAGGGAAAATCGTCGTAGGA 3 41 0 CAGGGAAAAT 0.951428 -260 CCCCATCCCCCAAGGAAATTAGCCCGTTTG 16 71 0 CAAGGAAATT 0.711104 -85 GTTCCCGTACCAGGGAAAATAACCTGTATG 30 33 1 CAGGGAAAAT 0.951428 -136 ATGGGCAACACAGGGAACTTCAGGGGTAAA 37 78 0 CAGGGAACTT 0.521512 -160 ACCCCAGTTTCAGGGAAAATTATAGAAACA 56 234 0 CAGGGAAAAT 0.951428 -67 CATTAACATCCAAGGAAATTACT 67 27 1 CAAGGAAATT 0.711104 -13 CATAGTTGCCCAGGGAAAAATC 85 3 0 CAGGGAAAAA 0.806081 -140 AGACCGAAAGCAGGGATAATAGCCTTGGTA 102 45 0 CAGGGATAAT 0.790976 -207 TTTTAATTATCAGGGAAAATACGGACAGAG 122 83 1 CAGGGAAAAT 0.951428 -48 TCTCCGGCCCCAGGGGAAATTTGTTTTACC 180 143 1 CAGGGGAAAT 0.750164 -62 CTTATATTTACAGGGAAATAGATGAAGAAG 183 82 1 CAGGGAAATA 0.611438 -219 TTACCCTTTTCAAGGAAATTTGCCACGGAT 184 201 1 CAAGGAAATT 0.711104 -100 GTTAAAACAGCAGGGAAAATTAAGTATTAA 193 43 0 CAGGGAAAAT 0.951428 -26 AGTGGATTTCCAGGGTAAATCCGCCGGAAA 194 117 1 CAGGGTAAAT 0.523997 -184 AAAAGAAGATCAAGGATAATTTTGGTAAAA 195 58 0 CAAGGATAAT 0.556763 -167 CAGATGATGGCAAGGAAAATTAAGCAAAAC 198 106 0 CAAGGAAAAT 0.866705 -179 TTCCCCCAGTCAGGGAAATTAGTTTGGTTT 199 23 0 CAGGGAAATT 0.881168 -69 CAATGGCAGGCAGGGAACATTTTATTGAAG 227 52 1 CAGGGAACAT 0.742209 -39 TTGATCAAGACAAGGAAAATTCCATTCTTC 251 29 1 CAAGGAAAAT 0.866705 -108 TGGACTTGGGCAGGGAAAAGAATACTGAAA 261 47 0 CAGGGAAAAG 0.775086 -81 GCTTCTTCCTCAGGGGAAATTTTTTCTGGG 267 82 1 CAGGGGAAAT 0.750164 -135 CTCACCATTGCAGGGAAAAATAAGGTTTCA 274 144 0 CAGGGAAAAA 0.806081 -123 AAAGACGGGTCAAGGATAATTTTTGTCCCC 278 63 1 CAAGGATAAT 0.556763 -160 TAATAAAAACCAAGGAAATGCCGTTGGTAA 278 178 0 CAAGGAAATG 0.302185 -45 ACAATAGAGCCAGGGAAAAAATTACAGCTC 288 108 1 CAGGGAAAAA 0.806081 -193 GGTCTAGGGACAAGGATAATCGAAGACAAT 320 279 1 CAAGGATAAT 0.556763 -22 ********** Masking position 2 Map Score: 17.1081 Number of sites scoring better than the average of aligned sites = 412 Number in coding regions = 343 Number in noncoding regions = 69 Number of orfs with sites within 600 bp upstream = 82 Fraction of orfs with sites within 600 bp upstream = 0.0131706 Motif number 13 GCCCAACAATGGAGAGATTAATCAGTTGAGC 2 42 1 GGAGAGATTA 0.610604 -45 GGGTAAGGGGAGACTAAATGGGCTAAT 6 252 0 GGGGAGACTA 0.86131 -17 GTTAGAATCTGGGGAGATTGATGGGGCTAGA 9 151 0 GGGGAGATTA 0.966674 -52 CCAAATTTAGGGGGAAACTGACTGAAAGTCC 32 152 1 GGGGAAACTA 0.610386 -149 GAGCTTTAGTGAGGAGATTTAGGGGGCAGAA 32 196 1 GAGGAGATTA 0.865534 -105 TGTTAGGATTGGGGAGGTTGATTGAGCCTAT 34 63 0 GGGGAGGTTA 0.797546 -48 AGGGGGGCTAGGGGGGATTAAACAGCCAAAA 42 47 0 GGGGGGATTA 0.894815 -208 GAGCTTTAGTGAGGAGATTTAGGGGGCAGAA 42 120 1 GAGGAGATTA 0.865534 -135 ATGGAGGTAAGGGGAAATTGACGCTACCGTG 49 27 1 GGGGAAATTA 0.87977 -51 TTGATAACCTGGGGAGATTAATCAAACTGAG 52 22 0 GGGGAGATTA 0.966674 -90 AGGGGGGCTAGGGGGGATTAAACGGCCAAAA 54 79 0 GGGGGGATTA 0.894815 -169 GAGCCTTAGTGAGGAGATTTAGAGAAATACC 54 153 1 GAGGAGATTA 0.865534 -95 AGGAAGGTTAGGGGAGATTAACCAGTCGTAC 55 89 0 GGGGAGATTA 0.966674 -54 TCCCCTCAGTGGGGAGAGTTAATTTAATATT 62 50 1 GGGGAGAGTA 0.698495 -88 CCAAGTTTGGGGGGAAGTTAAGTAAAATTCC 118 33 1 GGGGAAGTTA 0.498438 -268 AGGGGGGCTAGGGGGGATTAAACAGCCAAAA 118 174 1 GGGGGGATTA 0.894815 -127 TGCTCTTAGCGAGGAAATTTAGGGAGCAAAA 118 221 1 GAGGAAATTA 0.618871 -80 ACAAACTTAAGCGGAGATTAAACT 124 4 0 GCGGAGATTA 0.63095 -60 CCCTAATTCTGGGGAGATTTTTT 133 3 0 GGGGAGATTT 0.581833 -58 GAGCTTTAGTGAGGAGATTTAGGGGGCGGGT 208 144 0 GAGGAGATTA 0.865534 -93 AGAGGGGCTAGGGGGGATTAAACAGCCAAAA 217 105 0 GGGGGGATTA 0.894815 -196 ATTGGCTAAGGGAGAGATTGAAGCCCCATCA 220 64 1 GGAGAGATTA 0.610604 -28 GGATTTTAGTGGGGCGATTGAGCGGGATGAT 266 58 0 GGGGCGATTA 0.707267 -243 CTCAAACAAGGGGGAGATTTAACTGCCACAC 266 92 1 GGGGAGATTA 0.966674 -209 CTTGGCCTCCGAGGAAATTGAGATGGAAAAG 279 278 0 GAGGAAATTA 0.618871 -23 ACCTGGGCCAGAGGAAATTAACCGTTAAATG 287 49 0 GAGGAAATTA 0.618871 -158 TTTGAAGTTGGGGGAAACTGACAAACTTTAA 310 109 0 GGGGAAACTA 0.610386 -53 GGGGAAATTTAGTAAATTTCT 315 1 1 GGGGAAATTA 0.87977 -143 ********* * Masking position 9 Map Score: 29.9107 Number of sites scoring better than the average of aligned sites = 285 Number in coding regions = 211 Number in noncoding regions = 74 Number of orfs with sites within 600 bp upstream = 57 Fraction of orfs with sites within 600 bp upstream = 0.00915516 Motif number 14 GTCGGGCAAACCCTCAATTCCCTGGCGATCGA 7 81 0 CCCCAATCCC 0.981751 -220 GGTGCTCAAGCCCTCTAATCCCATAATTTTCA 22 57 0 CCCCTATCCC 0.946315 -46 TTTCCACCAAAGCCCATTGGGCACC 37 223 0 CCACAAGCCC 0.67335 -15 CTGTTTAATCCCCCCTAGCCCCCCTTAGAAAG 42 53 1 CCCCTACCCC 0.931915 -202 CGCCATTACCCCAGCTAACCCCTACTTCGGAA 43 21 0 CCACTACCCC 0.839127 -280 ATGGCGATCGCCATAAAATCCCCTGATGGAGG 51 158 1 CCAAAATCCC 0.767697 -57 CCGTTTAATCCCCCCTAGCCCCCCTTGGGAAG 54 85 1 CCCCTACCCC 0.931915 -163 CCCCTCCCCCCCATCTATTCCCTGTGA 56 6 0 CCACTATCCC 0.870423 -295 CTAGGCGTTGACATCAAATCCCAAAAGTGCAA 57 94 1 ACACAATCCC 0.516331 -145 TCGCCCTATTCCAACAACTCCGGCCCAGTGTC 58 188 1 CCACAATCCG 0.773249 -113 ATTGCCTTGACCCATAATTCCCAACCCCTACC 99 72 0 CCCTAATCCC 0.875603 -202 GTATTTATCCCCCTAAATCCCCTTTAAAAAAG 118 112 1 CCCAAACCCC 0.870696 -189 CTGTTTAATCCCCCCTAGCCCCCCTTGGGAAG 118 167 0 CCCCTACCCC 0.931915 -134 AGACGCAATGCCCATAATTCCCCAGGCTAAGT 148 94 1 CCCTAATCCC 0.875603 -92 TCTTCCCCCTCCACCAATTCCCGCAGGCGATC 152 83 1 CCACAATCCC 0.953492 -25 GCCAGCGATTACCGCAACCCCC 171 1 0 ACCCAACCCC 0.685059 -184 CAGGCGATCGCCCACAAGTCCGGTAAGCTTGA 177 89 0 CCCCAATCCG 0.899482 -194 TAATTTAGTCCCCTTAAATCCCTCTGATTTAT 183 216 0 CCCTAATCCC 0.875603 -85 CGAAATAGAGCCAGCAAATCCCAACATTGTCA 217 42 0 CCACAATCCC 0.953492 -259 CTGTTTAATCCCCCCTAGCCCCTCTTGGAAAG 217 111 1 CCCCTACCCC 0.931915 -190 GGTATTTATCCCCCTAAATCCCACTTAAAAAG 217 167 0 CCCTAATCCC 0.875603 -134 TGGCGGGAATCCACCAATTCCCATAGTCTAAG 218 197 1 CCACAATCCC 0.953492 -74 ATTGTTAACCCCATCAAGCCCGAAAATGTTCC 237 229 0 CCACAACCCG 0.725875 -48 CTCCCATTGGCCATCAATTCCGTTACTCCCTT 241 83 0 CCACAATCCG 0.773249 -218 ATTTCATGAGCCCACAAATCCCAAGCTTCTTA 247 35 1 CCCCAATCCC 0.981751 -184 TTTTGAAAGTCCCCAAACCCCCAATGATGGGG 273 45 0 CCCAAACCCC 0.870696 -27 ATAACCCTTCCCCGCAATTCCCAGGTAAAGGC 286 39 0 CCCCAATCCC 0.981751 -142 ATCTAATCACCCCAAAAATCCCTTTAAAAAAC 290 237 0 CCCAAATCCC 0.896608 -64 GTCATTTACCCCCTAAATTCCCCAACATTTGG 306 67 0 CCCAAATCCC 0.896608 -47 *** *** **** Masking position 7 Map Score: 43.5775 Number of sites scoring better than the average of aligned sites = 463 Number in coding regions = 378 Number in noncoding regions = 85 Number of orfs with sites within 600 bp upstream = 68 Fraction of orfs with sites within 600 bp upstream = 0.0109219 Motif number 15 GGCTTGAGCACCGCTCCAGTAATTGACTGT 22 77 1 CCGCTCCAGT 0.324522 -26 TCCGCACCATCCAACAAAAAA 23 72 0 CCGCACCATC 0.476625 -11 GAAAGTCCGGCTCCCCCAGCTTAATTTTGT 27 126 1 CTCCCCCAGC 0.87727 -46 GCTGTTTAATCCCCCCTAGCCCCCCTTAGA 42 52 1 CCCCCCTAGC 0.954897 -203 CTAACCAACCCTGCCCCGGCAAATCAACGG 43 208 1 CTGCCCCGGC 0.721918 -93 CCCAGGCCTCCCCCTCCATCAGGGGATTTT 51 172 0 CCCCTCCATC 0.664514 -43 GCCGTTTAATCCCCCCTAGCCCCCCTTGGG 54 84 1 CCCCCCTAGC 0.954897 -164 GGCAACTTGACCGCTCCAGCGGACTTTTCG 55 33 0 CCGCTCCAGC 0.91613 -110 CAATCCCCCTCCCCCCCATCTATTCCCTGT 56 13 0 CCCCCCCATC 0.930621 -288 ATTGTCTCGCCCCCCCTAGCCTGACCTCTG 94 44 0 CCCCCCTAGC 0.954897 -54 GTTTCAAAAGCCCCCCTGGCCCCCAAGTTT 118 11 1 CCCCCCTGGC 0.897677 -290 GCTGTTTAATCCCCCCTAGCCCCCCTTGGG 118 170 0 CCCCCCTAGC 0.954897 -131 ATAAACAAATCCCCCCCGGCGATCGCCTAT 131 86 1 CCCCCCCGGC 0.972201 -124 GTTTTTGCTTCCGCCCCAGTCCCAGTGGCC 155 25 0 CCGCCCCAGT 0.764898 -135 GATATTCTCTCCCTCCCATCCTTACTCCTT 171 53 0 CCCTCCCATC 0.6807 -132 TGCAACTTTGCCGTCCCAGCGGCGATCGCC 188 55 1 CCGTCCCAGC 0.921609 -246 ATAAACTCCTCCCCACCAGCCAACAAGCAT 194 28 0 CCCCACCAGC 0.86733 -273 TAGGGGAAAACCACCCTGGCGATCGCTGTT 195 103 0 CCACCCTGGC 0.638147 -122 GTTTTAAATGCTCCCCTAGCCCCCCAATTC 208 212 0 CTCCCCTAGC 0.641975 -25 GCTGTTTAATCCCCCCTAGCCCCTCTTGGA 217 110 1 CCCCCCTAGC 0.954897 -191 AAATTACCAACCATCCCATCAAGCAAGTTT 222 51 1 CCATCCCATC 0.299987 -62 GTTGAACGAACCATTCCAGCCAACCAATAA 224 89 1 CCATTCCAGC 0.284779 -22 CGAATTAATGCCGCCCTGGCTTTCAATCTA 229 129 1 CCGCCCTGGC 0.884915 -60 CGGAGTCAACCCCCTCCATCCCTGATCCTT 230 29 0 CCCCTCCATC 0.664514 -194 CCTCCCCCCCAGCAACTTAGACT 248 4 1 CCCCCCCAGC 0.98829 -254 ACCAACCGTCCCGTCCCATCGGTGTGGGAT 255 79 0 CCGTCCCATC 0.651386 -99 TGTCTCCAGACCGCCCCAGCCTCTTTTTCC 255 158 0 CCGCCCCAGC 0.986662 -20 GTTACCGATTCTACCCCAGCAGAGAGCGCA 263 23 0 CTACCCCAGC 0.58964 -180 TCTCGTAATTCCGCCCTAGCAAAGGCCTTG 263 170 0 CCGCCCTAGC 0.948865 -33 CATCATCATACCGTTCCGGCTCCCGATCGC 269 54 1 CCGTTCCGGC 0.418397 -81 GACTATCACCCCGTCCCAGCTTTGGCCAGC 279 36 0 CCGTCCCAGC 0.921609 -265 ATACGGAACTCCCCACCGGCAAAAACCCTA 290 200 0 CCCCACCGGC 0.730386 -101 TTCCGTTTGTCCACCCCAGCTTGTTCTTGA 292 92 1 CCACCCCAGC 0.944338 -32 CATTTTTGACCCGCCCCAGAATTT 293 223 1 CCGCCCCAGA 0.648512 -14 TCGCCAATCCCCGCCTCAGCAATATCCTCG 320 70 1 CCGCCTCAGC 0.634652 -231 ********** Masking position 1 Map Score: 43.2368 Number of sites scoring better than the average of aligned sites = 825 Number in coding regions = 738 Number in noncoding regions = 87 Number of orfs with sites within 600 bp upstream = 87 Fraction of orfs with sites within 600 bp upstream = 0.0139737