AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00310_synecho_reg_300.orf -o00310_synecho_300.ace -a/home/amcguire/genomes/ORF_synecho.txt -z/home/amcguire/genomes/synecho.fna -g0.48 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.48 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: slr1811 122 rpoD; hypothetical protein. Input sequences: #1 slr1772 90 penicillin acylase (penicillin V amidase). [EC:3.5.1.11] #2 sll1686 300 hypothetical protein. #3 sll1682 221 alanine dehydrogenase. [EC:1.4.1.1] #4 slr1780 58 hypothetical protein. #5 sll1680 33 hypothetical protein. #6 sll1679 198 hhoA; protease HhoA. [EC:3.4.21.-] #7 slr1783 63 regulatory components of sensory transduction system. #8 sll1678 74 spore maturation protein A. #9 sll1677 65 spore maturation protein B. #10 sll1676 97 malQ; 4-alpha-glucanotransferase. [EC:2.4.1.25] #11 sll1675 49 hypothetical protein. #12 slr1787 300 hypothetical protein. #13 sll1931 300 glyA; serine hydroxymethyltransferase (serine methylase) (SHMT). #14 sll2008 164 rpoD; processing protease. [EC:3.4.-.-] #15 slr2135 55 hupE; hydrogenase accessory protein. #16 slr2136 153 gcpE; GcpE. #17 sll2006 148 rpoD; hypothetical protein. #18 sll2005 128 gyrB; DNA gyrase subunit B. [EC:5.99.1.3] [SP:GYRB_SYNY3] #19 ssl3829 238 rpoD; hypothetical protein. #20 sml0007 79 ycf32; Ycf32. #21 sll2003 300 rpoD; hypothetical protein. #22 sll1702 38 rpoD; hypothetical protein. #23 slr1807 25 rpoD; hypothetical protein. #24 slr1808 161 hemA; glutamyl-tRNA reductase (GLUTR). [EC:1.2.1.-] [SP:HEM1_SYNY3] #25 sll1698 276 rpoD; hypothetical protein. #26 sll1697 123 rpoD; hypothetical protein. #27 slr1812 74 hypothetical protein. #28 slr1813 122 rpoD; hypothetical protein. #29 slr1814 140 rpoD; hypothetical protein. #30 slr1815 41 rpoD; hypothetical protein. #31 sll1695 98 hofG; general secretion pathway protein G. #32 sll1694 143 hofG; general secretion pathway protein G. #33 sll1693 154 rpoD; hypothetical protein. #34 sll1691 49 rpoD; hypothetical protein. #35 sll1689 300 rpoD; RNA polymerase sigma factor. #36 slr2001 147 pepE; peptidase E (alpha-aspartyl dipeptidase). [EC:3.4.-.-] #37 slr2002 32 hypothetical protein. #38 sll1902 300 hypothetical protein. #39 sll0809 140 putative lipoate-protein ligase A. [EC:6.-.-.-] #40 tRNA-Gly-1 66 tRNA-Gly. #41 slr0817 68 entC; isochorismate synthase. [EC:5.4.99.6] #42 slr0818 93 hypothetical protein. #43 ssr1391 77 hypothetical protein. #44 slr0820 145 glucosyltransferase. #45 ssl1507 78 transposase. #46 sll0808 300 transposase. #47 ssl1807 200 hypothetical protein. #48 tRNA-Lys 159 tRNA-Lys. #49 sll0945 203 glgA; glycogen synthase (starch (bacterial glycogen) synthase). #50 sll0944 145 hypothetical protein. #51 slr0320 40 hypothetical protein. #52 sll0306 300 rpoD; RNA polymerase sigma factor. #53 slr0776 107 lpxD; UDP-3-o-[3-hydroxymyristoyl] glucosamine n-acyltransferase. #54 sll0767 140 rplT, rpl20; 50S ribosomal protein L20. [SP:RL20_SYNY3] #55 ssl1426 96 rpmI, rpl35; 50S ribosomal protein L35. [SP:RL35_SYNY3] #56 sll0765 91 hypothetical protein. #57 tRNA-Ala-2 300 tRNA-Ala. #58 slr0021 65 putative protease slr0021. [EC:3.4.-.-] [SP:Y021_SYNY3] #59 sll0002 226 ponA; penicillin-binding protein 1A. #60 tRNA-Ser-4 225 tRNA-Ser. #61 slr0213 87 guaA; probable GMP synthase (glutamine-hydrolysing) (glutamine #62 sll0210 114 bacA; bacitracin resistance; possibly phosphorylates undecaprenol. #63 slr0216 127 cobU; cobinamide kinase. #64 slr0217 238 hypothetical protein. #65 ssr0349 258 hypothetical protein. #66 sll0209 218 hypothetical protein. #67 sll0208 257 hypothetical protein. #68 sll0207 157 rfbA; glucose-1-phosphate thymidylyltransferase. [EC:2.7.7.24] #69 slr0220 175 glyS; glycyl-tRNA synthetase beta chain (glycine--tRNA ligase beta #70 sll0205 286 hypothetical protein. #71 sll0204 136 gidA; glucose inhibited division protein A. #72 sll0202 129 gidA; glucose inhibited division protein A. [SP:GIDA_SYNY3] #73 sll0200 300 transposase. #74 slr0092 117 hisB; hypothetical protein. #75 slr0093 28 dnaJ-like protein slr0093. [SP:DNJH_SYNY3] #76 slr0095 161 hisB; O-methyltransferase. [EC:2.1.1.-] #77 slr0096 29 hisB; low affinity sulfate transporter. #78 slr0498 246 hisB; hypothetical protein. #79 sll0489 286 hisB; ABC transporter. #80 sll0488 116 hypothetical protein. #81 sll0487 109 hypothetical protein. #82 sll0486 173 hypothetical protein. #83 sll0485 247 hypothetical protein. #84 sll0484 130 ABC transporter. #85 slr0502 62 cobW; CobW. #86 slr0505 121 hypothetical protein. #87 slr0506 56 pcr; protochlorophyllide oxido-reductase. [EC:1.3.1.33] #88 sll0481 71 hypothetical protein. [SP:Y481_SYNY3] #89 sll0480 182 hypothetical protein. #90 slr0509 131 alkaline phosphatase-like. #91 slr0510 222 hypothetical protein. #92 ssr0871 55 transposase. #93 slr0511 300 transposase. #94 sll0290 300 ppk; polyphosphate kinase. [EC:2.7.4.1] #95 slr0319 78 blaOXA-3; beta-lactamase. [EC:3.5.2.6] #96 ssl0511 104 hypothetical protein. #97 sll0800 300 hypothetical protein. #98 slr1556 152 ddh; 2-hydroxyaciddehydrogenase. [EC:1.1.1.-] #99 sll1498 50 carA; carbamoyl-phosphate synthetase subunit A. [EC:6.3.5.5] #100 slr1557 99 hypothetical protein. #101 sll1496 146 mannose-1-phosphate guanyltransferase. [EC:2.7.7.-] #102 sll1495 154 hypothetical protein. #103 tRNA-Val 51 tRNA-Val. #104 slr1559 126 aroE; shikimate 5-dehydrogenase. [EC:1.1.1.25] #105 slr1560 77 hiss2; probable histidyl-tRNA synthetase 2 (histidine--tRNA ligase #106 slr1562 30 probable glutaredoxin slr1562. [SP:GLR1_SYNY3] #107 slr1563 300 hypothetical protein. Motif number 1 CATAGCTAAGGTCAATCGCC 4 1 0 GTCAATCGCC 0.717455 -58 AAAAGTTTTGCCCGATCGCCATGGTTATTG 4 36 1 CCCGATCGCC 0.939805 -23 TTCTATCCTAGGCGATCGCCGTCTTAACCG 14 132 0 GGCGATCGCC 0.499997 -33 AGACACTTTTGGCGATCGCCAATGTGAACC 17 94 0 GGCGATCGCC 0.499997 -55 TCGATTCATCGGCGATCGCCGAGACGTTGT 19 14 0 GGCGATCGCC 0.499997 -225 TGCCCAAACCGGCGATCGCCAGAATCAGGG 21 147 0 GGCGATCGCC 0.499997 -154 CCCCCACCACGGCGATCGCCCCTGGTAACC 25 213 0 GGCGATCGCC 0.499997 -64 CGGATCTCTGCGAGATCGCCAGATAATTCA 28 90 0 CGAGATCGCC 0.825662 -33 GGTTCTCCCTTTTGATCGCCTAATTCCACA 33 62 0 TTTGATCGCC 0.71851 -93 ATTCCTGACTGCCGATCGCC 60 1 0 GCCGATCGCC 0.553994 -225 CCCCTAGAATTGTGATCGCCCCACCGTTGC 62 17 0 TGTGATCGCC 0.905176 -98 GTGTTTGCTGTTCGATCGCCTTTGAGTAGA 64 199 0 TTCGATCGCC 0.916222 -40 AGTTAACGACTCCGATCGCCATAAAGCTTT 66 155 0 TCCGATCGCC 0.940273 -64 GCTTAAAAGATGCGATCGCCAAAACGCAGA 73 86 0 TGCGATCGCC 0.553518 -215 TTCCCAAACTGGCGATCGCCAAGGATCATC 78 110 0 GGCGATCGCC 0.499997 -137 CTGGAGCTTTGGCGATCGCCAGAGGAATGG 81 77 0 GGCGATCGCC 0.499997 -33 GTGATTAAAGGGCGATCGCCATTATAAAAG 89 157 0 GGCGATCGCC 0.499997 -26 GTAAGATCAACCTGATCGCCTATCCCTATG 94 262 1 CCTGATCGCC 0.837719 -39 AAATTCTAAGGGCGATCGCCATAACCATGT 97 277 0 GGCGATCGCC 0.499997 -24 ********** Masking position 6 Map Score: 58.6309 Number of sites scoring better than the average of aligned sites = 6149 Number in coding regions = 5599 Number in noncoding regions = 550 Number of orfs with sites within 600 bp upstream = 341 Fraction of orfs with sites within 600 bp upstream = 0.0547703 Motif number 2 ACTCCCACTCCGGCCCCCAAGTTTGCTTGG 6 50 1 CGGCCCCCAA 0.925643 -149 GTGCTTTTTACTTCCCCCAGGATATAGAAA 8 51 1 CTTCCCCCAG 0.96796 -24 AGATAAATATTAGCCCCCAGACTTGTTTTA 12 53 0 TAGCCCCCAG 0.816558 -248 GCGGTGCTTTCCGCCCCCAGCACTGTTTAC 13 268 1 CCGCCCCCAG 0.944386 -33 GCTACCTGCACAGGCCCCTGTGGAAAAAGG 14 22 0 CAGGCCCCTG 0.540964 -143 TAAAATTTTTTGTCCCCCTACAGCTAAGGC 14 50 0 TGTCCCCCTA 0.658483 -115 AAAACCTCAACTTCCCCCAAGAACATGGGA 21 13 1 CTTCCCCCAA 0.911286 -288 CATGGGAAAATGCCCCCCAAGTCCAACAGT 21 36 1 TGCCCCCCAA 0.785438 -265 CAACAGTTACCATGCCCCAAGATTCCGCCC 21 59 1 CATGCCCCAA 0.408073 -242 GTTTGGGCAATGTACCCCTGCGGGATTTTG 21 168 1 TGTACCCCTG 0.437562 -133 AACAAAACCCCTGCCCCCACCACGGCGATC 25 226 0 CTGCCCCCAC 0.65054 -51 TGATCCGAGTCAGCCCCCAGGGTCAGGGAA 36 106 1 CAGCCCCCAG 0.92676 -42 AGGTTTTCTTCCCCCTTGCTGGAGTCA 37 16 0 CTTCCCCCTT 0.645321 -17 GTTGGCTACCCTTCCCCCTGCTCAGTCTTC 39 75 1 CTTCCCCCTG 0.938589 -66 CCTGCTCAGTCTTCCCCCTGGCGTTTATTG 39 91 1 CTTCCCCCTG 0.938589 -50 GGCAATGCCCCCCAATAGTAAGGGC 42 6 1 TGCCCCCCAA 0.785438 -88 TCGTTCATTGCGCCCCCCAGGGACAACGG 43 10 0 CGCCCCCCAG 0.96836 -68 TGTAGTTGAGCTTCCCCCAGAGGGTTTTGG 47 169 1 CTTCCCCCAG 0.96796 -32 CGCTCCACTGCCGACCCCAATTCTCCTTGC 48 51 1 CCGACCCCAA 0.441998 -109 CTGCAATTTTCCGCCCCCATCTTAGCGCAG 60 184 0 CCGCCCCCAT 0.66904 -42 GCCCAGCCAGTGTCCCCCAGTCTACTCAAA 64 179 1 TGTCCCCCAG 0.918096 -60 CCTCCCCCCCAGCAACTTAGAC 67 3 1 TCCCCCCCAG 0.833152 -255 CAGTTTTGTTCAGCCCCCTAAATCTCTTCA 69 76 1 CAGCCCCCTA 0.685193 -100 ACTGAGTGAAAGTCCCCCAGTATTGCCGGA 69 113 0 AGTCCCCCAG 0.735981 -63 TTCACTCAGTTTCCCCCCAAATTGGAGGCC 69 133 1 TTCCCCCCAA 0.776322 -43 CTGCCCCAGCCTTACCCCTAACTAACTTAC 74 97 1 CTTACCCCTA 0.416206 -21 CCCCCGTCCACGTCCCCCATTACTAAATTC 76 118 1 CGTCCCCCAT 0.791378 -44 AAAATTGAAAAGTCCCCCTGGTTGCACAGA 80 87 1 AGTCCCCCTG 0.585101 -30 GGCGAAAATTTTGCCCCCATTCCTCTGGCG 81 61 1 TTGCCCCCAT 0.592448 -49 ATTCAGGTTACTGACCCCAGATTAATTGAG 82 119 1 CTGACCCCAG 0.826456 -55 GTTTTTGAACTGCCCCCCTGACCCCCCCAA 87 13 1 TGCCCCCCTG 0.844879 -44 TGCCCCCCTGACCCCCCCAAGGCTGGGGGG 87 23 1 ACCCCCCCAA 0.296878 -34 CACCGATAAATTCCCCCCAGCCTTGGGGGG 87 35 0 TTCCCCCCAG 0.910775 -22 TGAGTTACCCCTCGCCCCAGGGGAAATGGC 89 126 0 CTCGCCCCAG 0.842328 -57 TTCAGTTACCCATCCCCCTATCCCCATGAA 90 71 0 CATCCCCCTA 0.654496 -61 TCAGGTTGATCTTACCCCAGCTTAACCTGA 94 247 0 CTTACCCCAG 0.805627 -54 ATTAGCAGATTCGCCCCTGTCGTCTGTTC 99 32 0 TTCGCCCCTG 0.487371 -19 ATTTAAATAATTGACCCCAGTCTT 101 5 0 TTGACCCCAG 0.626204 -142 AATGTTTAAACTTGCCCCTGCCGAAACAAA 104 17 0 CTTGCCCCTG 0.737798 -110 ********** Masking position 5 Map Score: 37.9048 Number of sites scoring better than the average of aligned sites = 2801 Number in coding regions = 2506 Number in noncoding regions = 295 Number of orfs with sites within 600 bp upstream = 293 Fraction of orfs with sites within 600 bp upstream = 0.0470607 Motif number 3 CTTACTGCCACCAATGGGGATGGGCTGACAGAAA 2 102 0 CCAAGGATGG 0.517256 -199 AACTTTTCTCCCCATAGCTAAGGTCAATCGCC 4 9 0 CCCAGCAAGT 0.577254 -50 GGACAAGCCCATAGGTTTGGGGCATTTGGGA 9 8 1 CCCAGGTTGG 0.892653 -58 CATTTCTTGGCCCGTTGGATATGTTAAATCTGGA 10 49 1 CCCGGGTAGT 0.396322 -49 TTTTTTGTCCCCCTACAGCTAAGGCTACCTGCAC 14 41 0 CCCTAGTAGG 0.604244 -124 TCCCAAGGGGTCGGGATTAGGATAT 20 2 1 CCCAGGTCGG 0.859223 -78 CTCAACTTCCCCCAAGAACATGGGAAAATGCCCC 21 18 1 CCCAAAATGG 0.369339 -283 ACACAATCTAGCCACGGGGACTGGTATCTGGTTC 35 96 1 GCCAGGACGG 0.761113 -205 GATAGACCACCCCAACGGTTAAGGCTCTCCACTT 35 162 0 CCCAGGTAGG 0.966707 -139 CCGAGTCAGCCCCCAGGGTCAGGGAACCTTACCT 36 110 1 CCCCGGCAGG 0.790636 -38 AACCTTACCTGCCTTGGGTCATGG 36 134 1 GCCTGGCAGG 0.783765 -14 GGGAAGGGTAGCCAACGGGAAAGTTCTCCTGACA 39 57 0 GCCAGGAAGT 0.613624 -84 GGCAATGCCCCCCAATAGTAAGGGCAAAACTTTT 42 11 1 CCCAAGAAGG 0.875913 -83 CATTGCGCCCCCCAGGGACAACGG 43 1 0 CCCAGAAAGG 0.894656 -77 AACTTGAATTCCCATGGACATTGGCTCCGTGAGT 46 153 1 CCCAGAATGG 0.841463 -148 GCTTTATTTTCCCTTTGGGCAAGGCTGACCGATT 53 14 1 CCCTGGCAGG 0.941514 -94 TTCCATGGCACCCAGCGGAAAAGTGAGCAAAAAT 54 27 0 CCCAGGAAGT 0.876484 -114 TGACGAACTTCCCGTTGGCATGGGCCAGCTTCCT 66 103 0 CCCGGGATGG 0.87472 -116 CTAATATCGGCCCACCGCCTAGGGGATAGCGG 81 9 0 CCCAGCTAGG 0.800918 -101 TTTGGCGATCGCCAGAGGAATGGGGGCAAAATTT 81 66 0 GCCAGGATGG 0.901649 -44 CGTGGTTTTCCCCTCGACAAAAGGTCATGATGGA 84 75 1 CCCTACAAGG 0.414154 -56 TACCCCTCGCCCCAGGGGAAATGGCAATGGGTTT 89 117 0 CCCAGGAAGG 0.984359 -66 GATCGCCTATCCCTATGCCATTGGTGTCCTGCCC 94 275 1 CCCTGCATGG 0.70122 -26 ATGGCGATCGCCCTTAGAATTTGGGT 97 285 1 CCCTGATTGG 0.534596 -16 AGGCGTTTGGCCCAAAGGACTAGGCAACCCCCAA 100 14 0 CCCAGGCTGG 0.95501 -86 GGGACGATCTCCCTGTGGCCAAGGAATCCTCCGT 101 58 0 CCCTGGCAGG 0.941675 -89 TGACCCATTGGTAAGGGTTTTGGATAA 104 110 0 CCCAGGAAGG 0.955114 -17 CATTAGCATTGCCTAGGGCATCGGTTGGCAGAAA 107 105 0 GCCTGGATGG 0.815269 -196 **** ** ** ** Masking position 2 Map Score: 24.0152 Number of sites scoring better than the average of aligned sites = 1469 Number in coding regions = 1325 Number in noncoding regions = 144 Number of orfs with sites within 600 bp upstream = 147 Fraction of orfs with sites within 600 bp upstream = 0.0236107 Motif number 4 TGATCTCATTTCTCCCAAAACTTGGGAGGTTA 1 47 1 TCCCAAAACT 0.974886 -44 CACTCCCAAATGCCCCAAACCTATGGGCTTGT 9 13 0 TCCCAAACCT 0.971961 -53 TCTATTCCTCAAAACTTCCCACACAA 16 138 0 TCTCAAAACT 0.847325 -16 CAGGGGTACATTGCCCAAACCGGCGATCGCCA 21 156 0 TCCCAAACCG 0.889991 -145 GCAACCTTTTTTATCCAAACCTCCCCTCATTG 21 271 1 TTCCAAACCT 0.874092 -30 TGTCAATAAATGTCCCAAAACTGGCTCTGTGT 24 115 0 TCCCAAAACT 0.974886 -47 GTGTCATTGATTTTCCAAAAATGGCAAAACTT 35 68 0 TTCCAAAAAT 0.608919 -233 ATCAGTTTGCATCCCCAAAAATTATCCC 42 76 1 ACCCAAAAAT 0.539811 -18 TAAACTTGAATTTCCCAAAACTTGAATTCCCA 46 135 1 TCCCAAAACT 0.974886 -166 GTTGCAAGAATAACTCAAAAATCTATAAATAA 46 268 1 TCTCAAAAAT 0.526401 -33 TTTTTTCCAAAACTCCAAACATGT 47 3 1 TTCCAAAACT 0.886032 -198 CTTTCCCAAAAATGTCTTAGACT 52 288 0 TCCCAAAAAT 0.886032 -13 CAGGAAAAGTTTATCCAAACCGGCTATGGAGT 74 57 1 TTCCAAACCG 0.618357 -61 TAGAGTCTGTTTTCCCAAAACTCCAGTATTGC 79 100 1 TCCCAAAACT 0.974886 -187 TGCTTTAATTTGTCTCAAAACTGCGGGCATAG 83 133 1 TCTCAAAACT 0.847325 -115 TTGATTAGAGTCGCCCAAACCTAAAACC 107 7 0 TCCCAAACCT 0.971961 -294 GGAGAGGATGATGCCCAAACCTAAACAAAGCT 107 145 0 ACCCAAACCT 0.839491 -156 * ********* Masking position 7 Map Score: 15.6716 Number of sites scoring better than the average of aligned sites = 206 Number in coding regions = 174 Number in noncoding regions = 32 Number of orfs with sites within 600 bp upstream = 43 Fraction of orfs with sites within 600 bp upstream = 0.00690652 Motif number 5 ATTGACCTTAGCTATGGGGAGAAAAGTTTTGCCCGATCGCC 4 15 1 GCAGGGAGTG 0.564951 -44 CTTGGGGGCCGGAGTGGGAGTTGCCGAACGGTTTCTTGGGA 6 30 0 GGGGGGGGGG 0.987919 -169 GGCGATCGCCGTGGTGGGGGCAGGGGTTTTGTTAAGATTCT 25 223 1 GTGGGGGGTG 0.654941 -54 TCTAGCCACGGGGACTGGTATCTGGTTCTGGAACACCACTA 35 102 1 GGATGGATGG 0.755351 -199 GGCAATAAACGCCAGGGGGAAGACTGAGCAGGGGGAAGGGT 39 82 0 GCAGGGAGAG 0.564951 -59 AGCTTAAATGCAACGGGTTTTGAAGGATGGCTTTAATTAT 45 10 1 GCAGGGTGGG 0.827051 -69 AATTGGGGTCGGCAGTGGAGCGGGATTAGGGTTCAGGATTT 48 32 0 GGATGGGTGG 0.941583 -128 ATTATATGACGGTGGTGGTTACCCATCGGAGAGAGTAATTA 49 118 0 GGGTGGTTAG 0.64569 -86 GGCGTTGGGGCACTGGTAGGGTGAGATCAGC 50 1 1 GGGTGGGGGG 0.982793 -145 CGGTCAGAATGCTGAGGGTGGCGGCTCCGAGCAATCGTTAA 50 85 0 GCGGGGGTAG 0.833836 -61 TTTGGCGTTGGTGATTACTTGGGGCTAGAACGGT 50 122 0 GGGTGGGTGG 0.963106 -24 TAGCTATGCGGCTGTAGGAGCGTGGTATTGGTTTCGGCGGT 52 105 1 GCGAGGGTGG 0.45745 -196 TTTAGACGCCGCAAATGGTGACAAGGTTCGGGAATAAATAA 52 175 0 GCATGGGGGG 0.9377 -126 GCATAGAAGAGAAGTTGGAAGGCTTGAATGGTCGAGTTAAT 57 74 0 GAGTGGAGGG 0.600968 -227 GTGCAGATTAGGGACTGGAGAAACAGTCCTGGCCAATCCTA 59 58 0 GGATGGGGTG 0.917318 -169 AGATACATTAGGAAAGGGCTTGTCGGCGAAGCTATTTAGCT 59 143 1 GGAGGGTGAG 0.779003 -84 CTGGGCTTCAGGTATTGGGGTAGAATACGGGGATTGTTGAC 60 126 0 GGATGGGTGG 0.941583 -100 TCTGCGCTAAGATGGGGGCGGAAAATTGCAGAAATCCTTCT 60 183 1 GAGGGGGTAG 0.618112 -43 GGGCGTGTGTGGAGCTGGTGAACAAGGTCTGAAACAGTGGC 65 23 1 GGGTGGGGTG 0.947281 -236 AGGGCAAGGGAGCAATGGGTCGGTTAGGGAAGG 68 3 1 GGAGGGGGGG 0.98058 -155 CCATTCTTCAGGAGATGGGGCCTTCTCCTTGGGCGGTAGAC 71 50 1 GGGTGGGTTG 0.89145 -87 GTCCGGAAATGCTGATGGTTGTGGGTTCCAGATTCATAACC 76 62 0 GCGTGGTTAG 0.437496 -100 ATCGAATTTAGTAATGGGGGACGTGGACGGGGGTAGAACTT 76 110 0 GTAGGGGGGG 0.788373 -52 GCGGTGCGGCGACAATGGGGACAAAGAATGGGTTCCGAATC 78 56 1 GAATGGGGGG 0.829196 -191 CGCCAGTTTGGGAAGTGGTTCTGTCGGAATGATCGGTGGCG 78 126 1 GGATGGTGTG 0.711147 -121 GATCGCCAGAGGAATGGGGGCAAAATTTTCGCCCTGGTTTT 81 53 0 GGAGGGGTCG 0.629114 -57 TAAGTTCCAAGGTGAGGGGTTTATGGGTTAGTTAAGTTTAA 83 206 0 GGGGGGTGAG 0.850944 -42 ATTCCCCCCAGCCTTGGGGGGGTCAGGGGGGCAGTTCAAAA 87 15 0 GCTGGGGGGG 0.633813 -42 AAATGTTCGATGGGGGTGTTAAGGATAGGTTTTAGCAGA 89 9 1 GAGGGGGGGG 0.918415 -174 TCGCCCCAGGGGAAATGGCAATGGGTTTATGCTCGCTCCAA 89 104 0 GGATGGATTG 0.492719 -79 TCCAGAAGAAGGAACTGGGTATATTGATAAGCTTTACATAT 93 178 0 GGATGGTGAG 0.711147 -123 AAAAAGAGACGGGGTTGGGGAGTAGTCTCGGAAAGTGTACT 97 185 0 GGGTGGGTGG 0.963106 -116 GACTATGACTGGTGGGGGGACGATCTCCCTGTGGCCAAGGA 101 67 0 GGGGGGATTG 0.692523 -80 ** * *** * * ** Masking position 8 Map Score: 29.9927 Number of sites scoring better than the average of aligned sites = 1810 Number in coding regions = 1712 Number in noncoding regions = 98 Number of orfs with sites within 600 bp upstream = 106 Fraction of orfs with sites within 600 bp upstream = 0.0170254 Motif number 6 TACATAGCTCGGAATGGCAAATTAACTATAT 2 68 0 GGATGGCAAA 0.87911 -233 ATGGGGGTTGACTAAGGCAAAATTTTTGATT 2 178 1 ACAAGGCAAA 0.701601 -123 CCCCAATGTTAGCAAGGCAAACCTCTCAATA 3 56 1 AGAAGGCAAA 0.886203 -166 ACAAGTCAGTGGCGTGGAAAAGCTTTGAAAA 6 95 1 GGGTGGAAAA 0.782247 -104 CGTCCCTGTTAGAATGGCAAAAGTGAAAATT 6 144 1 AGATGGCAAA 0.886203 -55 GCAAGCCTAGGAAGGAAAATCTCTTTCCA 10 79 0 AGAAGGAAAA 0.801465 -19 CTGTGGAAAAAGGGAGGAAAATCC 14 4 0 AGGAGGAAAA 0.793688 -161 TCTTTGCTGTGGGATGGCAAAAGCCCTCAAA 18 83 0 GGATGGCAAA 0.87911 -46 AGAAATTTCTGCGGTGGAAAAACTTTGCAGT 19 113 0 GCGTGGAAAA 0.520292 -126 TGCCCTAAATAGGTGGGAAAACGCCAATCTC 21 243 0 AGTGGGAAAA 0.443535 -58 CAACAAAACTACAATGGAAAAGCCCCCTCTT 33 27 0 ACATGGAAAA 0.54931 -128 AAATTTTGAGAGGGGAAAAATCAAATCAA 34 9 1 AGGGGGAAAA 0.738553 -41 GAAACAATCGAGAAAGGAAAAGATGTGGCAA 35 261 0 AGAAGGAAAA 0.801465 -40 TCGCAACAATGGCGGGGCAAAATAGAATATG 41 39 0 GGGGGGCAAA 0.835761 -30 AAGGAGGAAGGGCTTGGCAAAAGCAAAATTC 47 77 0 GGTTGGCAAA 0.66163 -124 AATTCTCCTTGCCTAGGCAAATTTGAAAATT 48 69 1 GCTAGGCAAA 0.37121 -91 GGGTCGGTTAGGGAAGGCAAAAGCCACCACC 68 27 1 GGAAGGCAAA 0.87911 -131 GGTAAACCCCAGAGAGGCAAAGGCATAGCAT 83 176 1 AGGAGGCAAA 0.881253 -72 GCGATCCTAAAGAATGGCAAAGTTTAACCAC 86 39 0 AGATGGCAAA 0.886203 -83 AGTAGGGTGAAGAATGGAAAATGGTGAAAAG 92 33 0 AGATGGAAAA 0.801465 -23 TTTTCCAAGGAGTGGGGCAAAA 102 143 1 AGGGGGCAAA 0.844948 -12 AATTCTGCCCACCAAGGAAAACCGGAGAAAT 104 81 0 ACAAGGAAAA 0.54931 -46 ** ******** Masking position 9 Map Score: 15.6199 Number of sites scoring better than the average of aligned sites = 720 Number in coding regions = 583 Number in noncoding regions = 137 Number of orfs with sites within 600 bp upstream = 176 Fraction of orfs with sites within 600 bp upstream = 0.0282686 Motif number 7 TTAGTCAACCAGATGTTGGGCAATACTGG 1 9 1 CCAGTGTTGG 0.788013 -82 CTAAGCTCAGCCTGATTTTGGA 18 117 1 CCTGTTTTGG 0.884014 -12 AATGGCCCTTCCTGGCTCTGGGCTGGGGGGG 19 57 1 CCTGCTCTGG 0.889096 -182 CCGGAGCGGCCCTGATTCTGGCGATCGCCGG 21 138 1 CCTGTTCTGG 0.953107 -163 TAAACCTATTCCCGATTCTAGTCACATCCGG 26 69 0 CCCGTTCTAG 0.865536 -55 GGTTTTCTTCCCCCTTGCTGGAGTCATTGCT 37 11 0 CCCCTGCTGG 0.884703 -22 GGTAGTCCCTCCCGTTGCTGATCTCACCCTA 50 27 0 CCCGTGCTGA 0.795841 -119 CTTGGCCAGATGCTGGCCGAGTGGCA 51 25 0 CCAGTGCTGG 0.783363 -16 CATGGCTAACCCTGCTGTTGGAATTTTCAGA 55 39 0 CCTGTGTTGG 0.896599 -58 GTGGGTTTTTCCCTATTCTGGAGTGCTTTTA 66 73 1 CCCTTTCTGG 0.937325 -146 ATTCAAACATCCCGATTCTGGGGAAACTTAC 90 12 0 CCCGTTCTGG 0.982088 -120 GTGGCCAAGACCCGATTTTAGTCTAAGGTTC 90 43 1 CCCGTTTTAG 0.689959 -89 ATACCCAGTTCCTTCTTCTGGAATAGTAGCG 93 197 1 CCTTTTCTGG 0.826969 -104 CTCCGTTCCTCCCTATTTTGGGACCATCGAT 101 33 0 CCCTTTTTGG 0.838029 -114 ATCACAAATTCCCGCCGTTGGCCGCAAATCC 102 64 0 CCCGCGTTGG 0.908036 -91 TCATCCTCTCCCCTGCTCTGGCTGGGCAACT 107 166 1 CCCTCTCTGG 0.844837 -135 GCCATATCTTCCCGTTGCTGGTAATTCCAAC 107 204 0 CCCGTGCTGG 0.987327 -97 **** ****** Masking position 9 Map Score: 15.7987 Number of sites scoring better than the average of aligned sites = 460 Number in coding regions = 420 Number in noncoding regions = 40 Number of orfs with sites within 600 bp upstream = 45 Fraction of orfs with sites within 600 bp upstream = 0.00722775 Motif number 8 TACTGCCACCAATGGGGATGGGCTGACAGAAAA 2 101 0 AAGGGAGGGC 0.79134 -200 TCCAAAATCAGGCTGAGCTTAGGCATCT 18 111 0 AACGGCGAGC 0.875239 -18 CCCAGCCCAGAGCCAGGAAGGGCCATTGCACAA 19 51 0 AGCGGAGGGC 0.846684 -188 TCAAGGGTCCATCCCGCCGGGGC 23 13 1 ATCGCCGGGC 0.951455 -13 CTAGCTTAGGAATCTGGCGGGGCTTTTGCCAGG 24 51 1 AACGGCGGGC 0.982424 -111 GAAATTATCCAATCGGCCAGAGCATCATCCAGA 35 194 0 AACGCCGAGC 0.795106 -107 TAATCTCGCAACAATGGCGGGGCAAAATAGAAT 41 42 0 ACAGGCGGGC 0.722736 -27 TCCCCGCCGCAAGCGAACGGGGCATTACGGAAT 46 33 1 AACAACGGGC 0.67506 -268 GGCAGTAACCAAGGAGGAAGGGCTTGGCAAAAG 47 85 0 AAGGGAGGGC 0.79134 -116 TCATTAAGGGATTCCACAAGGGCCAAGATGAAG 52 33 0 ATCACAGGGC 0.571025 -268 ATCCTAGCCTATAGTGGCAGAGCAATTTCTTGA 62 63 0 ATGGGCGAGC 0.569707 -52 TCACAGGCAAAATCTGCCTGGGCACTGCTTCAA 64 102 0 AACGCCGGGC 0.96867 -137 AGACTGGGGGACACTGGCTGGGCTAGAAATTTT 64 169 0 ACCGGCGGGC 0.978448 -70 GCGCACTAAAATGGTAGCAGGGCTAAAAACTAT 72 103 0 ATGAGCGGGC 0.755983 -27 ATTAGTGAGTAAACAACCTGGGCACATTATGCC 79 254 0 AACACCGGGC 0.900822 -33 GCCTAGCATGATACGAGCCGGGCCATTATTGGT 96 58 1 ATCAGCGGGC 0.912983 -47 CTGTCAGTCAACGCAGACTGGGCTGTAATCAGA 97 89 0 ACCGACGGGC 0.853555 -212 TTAGTGGAACAGACGACAGGGGCGAATCTGCTA 99 26 1 AGCACAGGGC 0.472501 -25 CCTCTCCCCTGCTCTGGCTGGGCAACTAGCTTG 107 170 1 GCCGGCGGGC 0.669146 -131 ** * *** **** Masking position 10 Map Score: 13.4103 Number of sites scoring better than the average of aligned sites = 574 Number in coding regions = 532 Number in noncoding regions = 42 Number of orfs with sites within 600 bp upstream = 57 Fraction of orfs with sites within 600 bp upstream = 0.00915516 Motif number 9 AAATGAGATCAAATTTTCCCAGTATTGCCC 1 28 0 AAATTTTCCC 0.915137 -63 GGATTTACAGAAATTTTCACTTTTGCCATT 6 156 0 AAATTTTCAC 0.881162 -43 GTCTGGGAAGAAATTGTCAAGAGTTTCAAG 13 70 0 AAATTGTCAA 0.473479 -231 GCCTTAGCAAAAATTGTCCCCAAAATTGGC 26 31 1 AAATTGTCCC 0.757876 -93 AGCTAGAATAAAATTTACAACTAATCAACG 28 22 0 AAATTTACAA 0.534796 -101 AACATTAAATAAATTATCAAACAA 30 5 0 AAATTATCAA 0.613607 -37 CCAGTTATTTAAATTTCCCCTACAGAAGGA 32 113 1 AAATTTCCCC 0.594012 -31 AAATATCGTTAAATTTTCACGGCAGTGTAA 35 11 0 AAATTTTCAC 0.881162 -290 AAACAACCAGAAATTATCCAATCGGCCAGA 35 206 0 AAATTATCCA 0.697844 -95 GGACGATCAGAAATTATCAATCAAAATTAT 40 14 1 AAATTATCAA 0.613607 -53 GCATCCCCAAAAATTATCCC 42 84 1 AAATTATCCC 0.846804 -10 ATATGCATTCAAATTTACACATGTATAGCT 46 192 1 AAATTTACAC 0.733434 -109 TGATCAGAAAAAATTTTCAAATTTGCCTAG 48 81 0 AAATTTTCAA 0.755982 -79 GTTGAGACATAAATTTACCCCAT 58 53 1 AAATTTACCC 0.800059 -13 GCTGGGCTAGAAATTTTCCAGCATCGACAA 64 156 0 AAATTTTCCA 0.818368 -83 AAAGGTTAAGAAATTAACCCCCGGTTGTCT 67 172 0 AAATTAACCC 0.672252 -86 TCTGCCATCCAAATTTTCCCCTTTAGAACA 70 224 0 AAATTTTCCC 0.915137 -63 AATGGGGGCAAAATTTTCGCCCTGGTTTTT 81 52 0 AAATTTTCGC 0.5827 -58 GAAAAGAATAAAATTTTCACCATAATTA 92 9 0 AAATTTTCAC 0.881162 -47 GGCTCCATTTAAATTAACAATTGCTCCCC 103 10 0 AAATTAACAA 0.370781 -42 ********** Masking position 5 Map Score: 8.66915 Number of sites scoring better than the average of aligned sites = 541 Number in coding regions = 433 Number in noncoding regions = 108 Number of orfs with sites within 600 bp upstream = 118 Fraction of orfs with sites within 600 bp upstream = 0.0189528 Motif number 10 AGTTGGGGTTCTAGTCCATGGCATCGGTGGAAATG 3 148 1 CTGCCATGAC 0.925882 -74 TTTCCCGTACCTCACCCATCCAAACTTTAACC 5 12 1 CTACCATCAC 0.907693 -22 GGGCAATAGACTAGCCCAAGCAAACTTGGGGGCCG 6 60 0 CTGCCAACAC 0.949188 -139 TAATGTCTTTCTCGACAATTCTAGCTTAGGAATCT 24 31 1 CTGCAATCAC 0.881142 -131 ATTGGAATACTTAGGCCATGCCACCGGCCGGCAAT 49 25 1 TTGCCATCAC 0.881142 -179 CTAGCGGGATTTTCCCCATCCCAACTTTCCATGGC 54 52 0 TTCCCATCAC 0.720147 -89 AGGCGATTAACTCGACCATTCAAGCCTTCCAACTT 57 69 1 CTGCCATCAC 0.984575 -232 AGAAACAGTCCTGGCCAATCCTAACTAAGCTATGG 59 46 0 CTGCAATCAC 0.881142 -181 TTTTAGGAAGCTGGCCCATGCCAACGGGAAGTTCG 66 99 1 CTGCCATCAC 0.984575 -120 AAAACAGATTCTTGACCAAGCCATCTACTTAGAAA 73 47 1 CTGCCAACAC 0.949188 -254 GCCCTGTAAACTGACCCAATCAAGCGACCGCAATA 79 126 0 CTACCAACAC 0.742126 -161 TTGTGTTTCTCTGCTCCATGGTAGCCGATTCTGTT 85 23 1 CTCCCATGAC 0.812599 -40 TTCAGACTATCTTCTCCATTTTATCCTACCCACAA 91 107 1 CTCCCATTAC 0.61386 -116 TCCTATCATGCTGGTTCATGCTAGCACAGCATAGC 96 25 1 CTGTCATCAC 0.795308 -80 ** * **** * * * Masking position 8 Map Score: 10.1625 Number of sites scoring better than the average of aligned sites = 132 Number in coding regions = 108 Number in noncoding regions = 24 Number of orfs with sites within 600 bp upstream = 33 Fraction of orfs with sites within 600 bp upstream = 0.00530035 Motif number 11 GTCGGCATAGTATCCCCCTTGCAGAGATTGGT 3 200 1 TTCCCCTTGC 0.749561 -22 AAGTCATTTCTTGGCCCGTTGGATATGTTAAA 10 45 1 TGGCCCTTGG 0.487383 -53 TTCTGCCATCATCCCTTTGGTAGATATTTA 12 9 1 TATCCCTTGG 0.632102 -292 TTTCATTGGCTATTTCCTTTGCTCCTGAAAAC 16 43 1 TTTTCCTTGC 0.502005 -111 ATGGAGTCGTTTTTCCCTTTGGTGCCCCTGGC 24 78 0 TTTCCCTTGG 0.963818 -84 ACTGGCTCTGTGTTCCCCATGGAGTCGTTTTT 24 96 0 TTTCCCATGG 0.945446 -66 AATATAAACCTATTCCCGATTCTAGTCACATC 26 72 0 TTTCCCATTC 0.579928 -52 TGGTATCTGGTTCTCCCTTTTGATCGCCTAAT 33 68 0 TCTCCCTTTG 0.579077 -87 AGGTTTTCTTCCCCCTTGCTGGAGTCAT 37 15 0 TTTCCCCTTG 0.572735 -18 GTCAGGAGAACTTTCCCGTTGGCTACCCTTCC 39 58 1 CTTCCCTTGG 0.689322 -83 CCCTGCTCAGTCTTCCCCCTGGCGTTTATTGC 39 90 1 TTTCCCCTGG 0.869304 -51 TGTTAATTACTCTCTCCGATGGGTAACCACCA 49 115 1 TTCTCCATGG 0.320484 -89 AAAGCTTTATTTTCCCTTTGGGCAAGGCTGA 53 10 1 TTTCCCTTGG 0.963818 -98 TGGTGCATGTTACGCCCTTTGGTAACAAACCT 56 17 1 TCGCCCTTGG 0.718208 -75 TTTATTTATGTCTTCCCCATTGTTCTGA 61 70 1 TTTCCCATTG 0.777414 -18 ATCTGTGGGTTTTTCCCTATTCTGGAGTGCTT 66 69 1 TTTCCCATTC 0.579928 -150 AATTTGACGAACTTCCCGTTGGCATGGGCCAG 66 109 0 ATTCCCTTGG 0.599522 -110 ACTGGATAGGTGTTCCCTATGGTTAGACCGCT 67 97 1 TTTCCCATGG 0.945446 -161 AGATCAATGCTCTCCCCGATGCCATGAAAATT 70 100 1 TTCCCCATGC 0.660697 -187 CTGGGCACATTATGCCCCTTTCTCGGCCGGCC 79 238 0 TTGCCCTTTC 0.442049 -49 CAAAATTCAGTTTTACCAATGGTTGA 86 106 1 TTTACCATGG 0.396376 -16 CAATCAATACTGCTCCCGTTGGTTTAATCATG 89 75 0 TCTCCCTTGG 0.872226 -108 CCTTCGCATATATTTCCCATGGAAAATATAAA 94 129 0 TTTTCCATGG 0.623946 -172 TCACTATGACTATGCCCGTTGGTCTTAGAAAG 97 155 1 TTGCCCTTGG 0.908639 -146 CTATGCCATATCTTCCCGTTGCTGGTAATTCC 107 207 0 TTTCCCTTGC 0.913264 -94 * ***** **** Masking position 10 Map Score: 15.7475 Number of sites scoring better than the average of aligned sites = 1037 Number in coding regions = 915 Number in noncoding regions = 122 Number of orfs with sites within 600 bp upstream = 133 Fraction of orfs with sites within 600 bp upstream = 0.021362 Motif number 12 CCAGATGTTGGGCAATACTGGGAAAATTTG 1 19 1 GGCAATACTG 0.840032 -72 ATGGCGATCGGGCAAAACTTTTCTCCCCAT 4 28 0 GGCAAAACTT 0.839332 -31 TTCCAAAAATGGCAAAACTTTAGTTTTTTT 35 58 0 GGCAAAACTT 0.839332 -243 CAATAGTAAGGGCAAAACTTTTCTTGCTAT 42 23 1 GGCAAAACTT 0.839332 -71 TGAACGGGATGGTTAAGCTGGCAGTAACCA 47 107 0 GGTTAAGCTG 0.811625 -94 TTTCCCTTTGGGCAAGGCTGACCGATTTAG 53 21 1 GGCAAGGCTG 0.873248 -87 CACTTTCCCAGGTAAAGCTGAAATTATCTT 54 103 1 GGTAAAGCTG 0.893226 -38 AATAACCCACGGCAAATCTGCGCTAAGATG 60 167 1 GGCAAATCTG 0.720552 -59 CTAAAGCTCCGGCAATACTGGGGGACTTTC 69 106 1 GGCAATACTG 0.840032 -70 GTTAGTTAGGGGTAAGGCTGGGGCAGTTTG 74 93 0 GGTAAGGCTG 0.743542 -25 GGAAAACCACGGCTAAACTTAAAGATCCGC 84 56 0 GGCTAAACTT 0.729038 -75 AATTGTTAGTGGTTAAACTTTGCCATTCTT 86 31 1 GGTTAAACTT 0.531015 -91 TCAACCATTGGTAAAACTGAATTTTGCTT 86 103 0 GGTAAAACTG 0.87315 -19 ATTTTCGTCAGGTTAAGCTGGGGTAAGATC 94 240 1 GGTTAAGCTG 0.811625 -61 TATCATGCTAGGCTATGCTGTGCTAGCATG 96 41 0 GGCTATGCTG 0.766735 -64 ********** Masking position 5 Map Score: 7.95146 Number of sites scoring better than the average of aligned sites = 366 Number in coding regions = 304 Number in noncoding regions = 62 Number of orfs with sites within 600 bp upstream = 66 Fraction of orfs with sites within 600 bp upstream = 0.0106007 Motif number 13 CAGAGATTTTGAACTGTCCATGGTCTGATA 2 12 0 GAACTGTCCA 0.756396 -289 TGTGGGCAATAGACTAGCCCAAGCAAACTT 6 68 0 AGACTAGCCC 0.826426 -131 GTTCCAGTCTGGACTGTCCACTTGTTTTGA 16 12 0 GGACTGTCCA 0.84721 -142 TCTCTTTCCAAGACTGACCAAATGACGACC 29 110 1 AGACTGACCA 0.671233 -31 TTTGTTGTATGGACTGGCCAGCATTTTCAA 32 18 0 GGACTGGCCA 0.913386 -126 GCCTTTCCTCAGACTACCCAAATTTGGTAT 33 94 0 AGACTACCCA 0.766398 -61 ACGCAACGGCGGACTACCCATATTCTATTT 41 21 1 GGACTACCCA 0.794919 -48 GCCATGAATAAAACTACCCATTGATGGAAA 44 33 1 AAACTACCCA 0.647533 -113 CTTTGTCCGTGGACTATCCATTGCCGGCCG 49 49 0 GGACTATCCA 0.670832 -155 GCAACGGGAGGGACTACCCCCACTTACTCA 50 40 1 GGACTACCCC 0.849187 -106 AAACGTTTTTAAACTGTCCCCTAGAATTGT 62 34 0 AAACTGTCCC 0.79262 -81 TTGATTGCCAAGGCTGGCCAATAGATTAGA 64 42 0 AGGCTGGCCA 0.740148 -197 GTCCCTCTTTGAGCTAGCCCAGCAGTTTTA 65 172 0 GAGCTAGCCC 0.493347 -87 TGCTTTTAGGAAGCTGGCCCATGCCAACGG 66 96 1 AAGCTGGCCC 0.698772 -123 CTTGGGCGGTAGACTGTCCCCTGCTTTAAA 71 77 1 AGACTGTCCC 0.872212 -60 GGAGTTGATCAAACTGCCCCAGCCTTACCC 74 84 1 AAACTGCCCC 0.879073 -34 TCAGCCCTGTAAACTGACCCAATCAAGCGA 79 134 0 AAACTGACCC 0.624443 -153 TCGTTTTTGAACTGCCCCCCTGACCCCC 87 9 1 GAACTGCCCC 0.895712 -48 TACCGTCCTTAAACTGGCCATAATTTTCGT 94 218 1 AAACTGGCCA 0.833291 -83 ********** Masking position 5 Map Score: 10.5758 Number of sites scoring better than the average of aligned sites = 516 Number in coding regions = 439 Number in noncoding regions = 77 Number of orfs with sites within 600 bp upstream = 97 Fraction of orfs with sites within 600 bp upstream = 0.0155798 Motif number 14 AAAACTGGCTCTGTGTTCCCCATGGAGTCG 24 101 0 CTGTGTTCCC 0.912925 -61 GCTGTTTTCCCAAATGATTAA 27 2 1 CTGTTTTCCC 0.9663 -73 TCCCCCTGCTCAGTCTTCCCCCTGGCGTTT 39 87 1 CAGTCTTCCC 0.77567 -54 GAATTTATTTATGTCTTCCCCATTGTTCTG 61 67 1 ATGTCTTCCC 0.882932 -21 AATTTCACCAATCTTTTCCCC 79 2 0 ATCTTTTCCC 0.64974 -285 AAGTTAGAGTCTGTTTTCCCAAAACTCCAG 79 96 1 CTGTTTTCCC 0.9663 -191 TCTCAATATAATGTTTTCCCGCAACCCCAA 104 46 1 ATGTTTTCCC 0.918087 -81 TGTCCCTGTCCTGTTTTCCCCT 106 3 0 CTGTTTTCCC 0.9663 -28 ********** Masking position 6 Map Score: 3.82999 Number of sites scoring better than the average of aligned sites = 24 Number in coding regions = 17 Number in noncoding regions = 7 Number of orfs with sites within 600 bp upstream = 9 Fraction of orfs with sites within 600 bp upstream = 0.00144555 Motif number 15 AGTACCTTGGGAAAAATCAAA 7 2 1 GTACCTTGGG 0.831802 -62 GCATTTGGGAGTGCCTTGGCGTAACCCCGA 9 32 1 GTGCCTTGGC 0.877415 -34 TGTTGACACTGTGCCTAGGGATCGGAGTAT 17 39 1 GTGCCTAGGG 0.954439 -110 GGCGGGGCTTTTGCCAGGGGCACCAAAGGG 24 66 1 TTGCCAGGGG 0.890567 -96 CTGTAATTGGTTACCAGGGGCGATCGCCGT 25 205 1 TTACCAGGGG 0.657667 -72 TTGTTTTCTGTTTCCTTGGGTGGCCTTGTT 35 230 1 TTTCCTTGGG 0.807163 -71 GGAACCTTACCTGCCTTGGGTCATGG 36 132 1 CTGCCTTGGG 0.752711 -16 CCGTTGTCCCTGGGGGGCGCAATGA 43 6 1 GTCCCTGGGG 0.646983 -72 ACCCTTTCCATTACCCAGGGAAA 43 65 1 TTACCCAGGG 0.569409 -13 CCAATTCTCCTTGCCTAGGCAAATTTGAAA 48 67 1 TTGCCTAGGC 0.85832 -93 CCCATCCCAGTTACCTAGGGTGGGGAGTTT 53 71 0 TTACCTAGGG 0.807163 -37 CCATCCCAACTTTCCATGGCACCCAGCGGA 54 42 0 TTTCCATGGC 0.443794 -99 TCTCTGAGGTGTGCCTGGGGATTCGCCCTC 60 44 0 GTGCCTGGGG 0.945157 -182 TAGCGCAGATTTGCCGTGGGTTATTCTGGG 60 162 0 TTGCCGTGGG 0.752711 -64 GGATTTTTGATTGCCAAGGCTGGCCAATAG 64 48 0 TTGCCAAGGC 0.771685 -191 TTTTGAAGCAGTGCCCAGGCAGATTTTGCC 64 100 1 GTGCCCAGGC 0.693374 -139 TTTTACCATTGTGCCAAGGGATGAATTTTC 78 216 1 GTGCCAAGGG 0.921183 -31 TAGTTTATATTTTCCATGGGAAATATATGC 94 126 1 TTTCCATGGG 0.700174 -175 CCGGAGAAATGTTCCTTGGGGTTGCGGGAA 104 61 0 GTTCCTTGGG 0.831802 -66 TTCATTAGCATTGCCTAGGGCATCGGTTGG 107 111 0 TTGCCTAGGG 0.946612 -190 ********** Masking position 2 Map Score: 13.1389 Number of sites scoring better than the average of aligned sites = 829 Number in coding regions = 755 Number in noncoding regions = 74 Number of orfs with sites within 600 bp upstream = 82 Fraction of orfs with sites within 600 bp upstream = 0.0131706