AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00330_synecho_reg_300.orf -o00330_synecho_300.ace -a/home/amcguire/genomes/ORF_synecho.txt -z/home/amcguire/genomes/synecho.fna -g0.48 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.48 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: slr1319 165 fecB; iron(III) dicitrate transport system permease protein FecB. sll0225 21 bcp; hypothetical protein. slr0220 175 glyS; glycyl-tRNA synthetase beta chain (glycine--tRNA ligase beta slr0049 25 hypothetical protein. Input sequences: #1 slr1312 150 speA; arginine decarboxylase. [EC:4.1.1.19] #2 sll1209 123 lig; DNA ligase. [EC:6.5.1.2] #3 slr1315 134 rfbD; hypothetical protein. #4 slr1316 96 fecC; iron(III) dicitrate transport system permease protein FecC. #5 slr1317 261 fecD; iron(III) dicitrate transport system permease protein FecD. #6 sll1206 206 iutA; ferric aerobactin receptor. #7 sll1205 242 pchR; regulatory protein PchR. #8 sll1202 121 hypothetical protein. #9 sll1409 132 fhuA; ferrichrome-iron receptor. #10 sll1408 67 pcrR; regulatory protein PcrR. #11 sll1407 72 fhuA; hypothetical protein. #12 sll1406 69 fhuA; ferrichrome-iron receptor. #13 sll1404 300 exbB; biopolymer transport ExbB protein. #14 sll0227 205 ppiB; peptidyl-prolyl cis-trans isomerase B. [EC:5.2.1.8] #15 sll0226 138 ycf4; hypothetical protein. #16 sll0224 300 bcp; hypothetical protein. #17 slr1099 300 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase. [EC:4.1.1.-] #18 sll0938 40 aspartate transaminase. [EC:2.6.1.1] #19 ssl1792 33 hypothetical protein. #20 sll0936 83 hypothetical protein. #21 slr0969 102 cbiH; precorrin methylase. #22 slr0971 82 hypothetical protein. #23 sll0934 195 ccmA; carboxysome formation protein. [EC:5.4.99.5] #24 ssl1784 164 rpsO, rps15; 30S ribosomal protein S15. [SP:RS15_SYNY3] #25 sll0932 100 hypothetical protein. #26 sll0931 171 hypothetical protein. [EC:2.1.1.45] #27 sll0930 43 hypothetical protein. #28 sll0928 111 apcD; allophycocyanin-B. #29 sll0927 168 metX; S-adenosylmethionine synthetase. [EC:2.5.1.6] #30 sll0925 266 hypothetical 23.0 kD protein sll0925. [SP:Y925_SYNY3] #31 slr0974 300 infC; translation initiation factor IF-3. [SP:IF3_SYNY3] #32 sll1508 300 lpxC; UDP-3-0-acyl N-acetylglcosamine deacetylase. [EC:3.5.1.-] #33 slr1134 300 hypothetical protein. #34 sll1077 300 speB; agmatine ureohydrolase. [EC:3.5.3.11] #35 slr0877 207 amidase. [EC:3.5.1.4] #36 slr0878 97 hypothetical protein. #37 slr0879 93 gcvH; glycine decarboxylase complex H-protein. #38 slr0880 22 secreted protein MPB70 precursor. #39 sll0873 142 napC; carboxynorspermidine decarboxylase. #40 ssl1633 85 CAB/ELIP/HLIP superfamily. #41 slr0881 88 hypothetical protein. #42 sll0872 153 hypothetical protein. #43 slr0882 300 hypothetical protein. #44 sll1425 168 proS; proline-tRNA ligase. [EC:6.1.1.15] [SP:SYP_SYNY3] #45 slr1505 71 hypothetical protein. #46 sll1423 72 ntcA; global nitrogen regulator. [SP:NTCA_SYNY3] #47 ssl2781 113 hypothetical protein. #48 slr1506 300 hypothetical protein. #49 sll1561 300 putA; delta-1-pyrroline-5-carboxylate dehydrogenase. [EC:1.5.1.12] #50 sll0006 103 aspC; aspartate aminotransferase. [EC:2.6.1.1] #51 sll0005 187 hypothetical 77.3 kD protein sll0005. [SP:Y005_SYNY3] #52 slr0020 100 recG; DNA recombinase. [EC:3.6.1.-] #53 slr0021 65 putative protease slr0021. [EC:3.4.-.-] [SP:Y021_SYNY3] #54 sll0002 226 ponA; penicillin-binding protein 1A. #55 tRNA-Ser-4 225 tRNA-Ser. #56 slr0213 87 guaA; probable GMP synthase (glutamine-hydrolysing) (glutamine #57 sll0210 114 bacA; bacitracin resistance; possibly phosphorylates undecaprenol. #58 slr0216 127 cobU; cobinamide kinase. #59 slr0217 238 hypothetical protein. #60 ssr0349 258 hypothetical protein. #61 sll0209 218 hypothetical protein. #62 sll0208 257 hypothetical protein. #63 sll0207 157 rfbA; glucose-1-phosphate thymidylyltransferase. [EC:2.7.7.24] #64 sll0205 286 hypothetical protein. #65 sll0204 136 gidA; glucose inhibited division protein A. #66 sll0202 129 gidA; glucose inhibited division protein A. [SP:GIDA_SYNY3] #67 sll0200 300 transposase. #68 sll0402 122 aspC; aspartate aminotransferase. [EC:2.6.1.1] #69 sll0401 193 gltA; citrate synthase. [EC:4.1.3.7] [SP:CISY_SYNY3] #70 sll0400 62 hypothetical protein. [SP:Y400_SYNY3] #71 slr0440 93 hypothetical protein. #72 ssr0102 74 ycf40; hypothetical protein. #73 sll0072 31 hypothetical protein. #74 sll0071 93 hypothetical protein. #75 sll0070 90 purU; formyltetrahydrofolate deformylase (formyl-fh(4) hydrolase). #76 sll0069 26 hypothetical protein. #77 sll0068 157 hypothetical protein. #78 sll0067 93 gst; glutathione S-transferase. [EC:2.5.1.18] #79 sll0066 99 hypothetical protein. #80 sll0065 181 ilvN; acetolactate synthase. [EC:4.1.3.18] #81 slr0053 64 hypothetical 20.1 kD protein slr0053. [SP:Y053_SYNY3] #82 slr0054 135 dgkA; probable diacylglycerol kinase (DAGK) (diglyceride kinase) #83 slr0055 143 trpG; anthranilate synthase component II. [EC:4.1.3.27] #84 slr0056 146 G4; chlorophyll synthase 33 kD subunit. #85 sll0064 300 hypothetical protein. #86 sll0827 266 hypothetical protein. #87 slr0841 300 hypothetical protein. #88 slr0092 117 hisB; hypothetical protein. #89 slr0093 28 dnaJ-like protein slr0093. [SP:DNJH_SYNY3] #90 slr0095 161 hisB; O-methyltransferase. [EC:2.1.1.-] #91 slr0096 29 hisB; low affinity sulfate transporter. #92 slr0498 246 hisB; hypothetical protein. #93 sll0489 286 hisB; ABC transporter. #94 sll0488 116 hypothetical protein. #95 sll0487 109 hypothetical protein. #96 sll0486 173 hypothetical protein. #97 sll0485 247 hypothetical protein. #98 sll0484 130 ABC transporter. #99 slr0502 62 cobW; CobW. #100 slr0505 121 hypothetical protein. #101 slr0506 56 pcr; protochlorophyllide oxido-reductase. [EC:1.3.1.33] #102 sll0481 71 hypothetical protein. [SP:Y481_SYNY3] #103 sll0480 182 hypothetical protein. #104 slr0509 131 alkaline phosphatase-like. #105 slr0510 222 hypothetical protein. #106 ssr0871 55 transposase. #107 slr0511 300 transposase. #108 sll0107 119 eda; 4-hydroxy-2-oxoglutarate aldolase. [EC:4.1.3.16] #109 slr0103 45 hypothetical protein. #110 slr0104 37 hypothetical 90.3 kD protein slr0104. [SP:Y104_SYNY3] #111 sll0103 82 hypothetical 45.8 kD protein sll0103. [SP:Y103_SYNY3] #112 sll0102 300 hypothetical protein. #113 sll0034 62 hypothetical protein. #114 sll0033 160 hypothetical protein. #115 sll0031 300 hypothetical protein. #116 sll0502 197 argS; arginyl-tRNA synthetase (arginine--tRNA ligase) (argRS). #117 sll0501 201 hypothetical 36.7 kD protein sll0501. [SP:Y501_SYNY3] #118 slr0541 79 hypothetical protein. #119 slr0542 77 clpP1; ATP-dependent clp protease proteolytic subunit 1 #120 slr0543 70 trpB; tryptophan synthase beta chain. [EC:4.2.1.20] [SP:TRPB_SYNY3] #121 sll0499 300 clpP; hypothetical protein. #122 sll0902 112 argF; ornithine carbamoyltransferase chain f. [EC:2.1.3.3] #123 sll0901 100 purE; phosphoribosylaminoimidazole carboxylase catalytic subunit #124 slr0925 300 ssb; single-stranded DNA-binding protein. #125 sll0626 196 lim17; LIM17. #126 sll0625 281 hypothetical protein. #127 sll0624 300 hypothetical protein. #128 slr0662 82 speA; arginine decarboxylase. [EC:4.1.1.19] #129 sll0623 45 hypothetical protein. #130 sll0622 92 nadA; quinolinate synthetase. [EC:4.6.1.3] [SP:NADA_SYNY3] #131 sll0621 284 dsbD; thiol:disulfide interchange protein DsbD. #132 slr0664 136 hypothetical protein. #133 slr0665 229 acnB; aconitate hydratase 2 (citrate hydro-lyase 2) (aconitase 2). #134 slr0666 300 hypothetical protein. #135 slr0585 118 argG; argininosuccinate synthase (citrulline--aspartate ligase). #136 slr0586 151 hypothetical protein. #137 slr0587 41 hypothetical protein. #138 sll0578 75 purK; phosphoribosylaminoimidazole carboxylase ATPase subunit (air #139 sll0577 195 hypothetical protein. #140 slr0588 29 hypothetical protein. #141 slr0589 108 hypothetical protein. #142 slr0590 113 hypothetical protein. #143 sll0576 79 HrEpiB. #144 sll0574 206 rfbA; integral membrane O-antigen translocator protein. #145 sll0572 300 hypothetical protein. Motif number 1 GGATATATTTTGGCGATCGCCTTTCACTCC 2 42 0 TGGCGATCGC 0.997084 -82 GCCTTGTCCATGGCGATCGCTGTTTATTT 3 116 1 TGGCGATCGC 0.997084 -19 AAATGTGCTGTGGCGATTGGGACAACCTTG 7 67 0 TGGCGATTGG 0.789758 -176 TAGGATGATAGGGCGATCACCTTAGGGGAA 15 54 0 GGGCGATCAC 0.845246 -85 CCGACCAGGATGGCGATCTCCAACGAGAAT 20 19 0 TGGCGATCTC 0.946819 -65 GGCTAGCCAATGGCGATCGTAAAGATATTT 30 187 1 TGGCGATCGT 0.979195 -80 TTTTATAAAGTGGCGATCGTTTGCTCAATC 33 103 0 TGGCGATCGT 0.979195 -198 TGGTCCAAATTGGCGATCGTCTCTCATCCG 33 183 0 TGGCGATCGT 0.979195 -118 AACTTTAGTTTGGCGATCGCCGATAAAAAG 34 42 1 TGGCGATCGC 0.997084 -259 CCTTTCGGCGATCGGTTCGGGACAC 35 6 1 CGGCGATCGG 0.980706 -202 TTATTTTCCTTGGCGATCGCCGTGGCGGTT 35 124 1 TGGCGATCGC 0.997084 -84 CCAAACCCGCTGGCGATCGCCAAAAACAGG 43 157 1 TGGCGATCGC 0.997084 -144 CTTATCTTCTGGGCGATCTGTTTGGTAAGG 49 279 0 GGGCGATCTG 0.619309 -22 AATTCCTGACTGCCGATCGCC 55 2 0 TGCCGATCGC 0.928801 -224 TGCAACGGTGGGGCGATCACAATTCTAGGG 57 16 1 GGGCGATCAC 0.845246 -99 TAAAGCTTTATGGCGATCGGAGTCGTTAAC 61 154 1 TGGCGATCGG 0.993194 -65 TTCTGCGTTTTGGCGATCGCATCTTTTAAG 67 85 1 TGGCGATCGC 0.997084 -216 AAAACTCTGCTGGGGATCGGTTTCCCAAGC 78 28 1 TGGGGATCGG 0.847734 -66 ATTTTAGGACGGCGATCGCCGGGGATAAT 84 10 1 CGGCGATCGC 0.991674 -137 TGATGATCCTTGGCGATCGCCAGTTTGGGA 92 109 1 TGGCGATCGC 0.997084 -138 CCCATTCCTCTGGCGATCGCCAAAGCTCCA 95 76 1 TGGCGATCGC 0.997084 -34 CCTTTTATAATGGCGATCGCCCTTTAATCA 103 156 1 TGGCGATCGC 0.997084 -27 TTTTAACCATGGCGATCGGAGGGCGGAGA 108 101 0 TGGCGATCGG 0.993194 -19 GCAGTTGGCGATCGTTGCAGCTCAT 113 48 0 TGGCGATCGT 0.979195 -15 GGGGGTGGCTCGGCGATCGAGTGCTCCCTG 114 55 1 CGGCGATCGA 0.832861 -106 TATAGACCACTGGCGATCGGCATGGTAACA 117 83 1 TGGCGATCGG 0.993194 -119 CCCCCAACACTGGCGATCGCCGATTGATCC 124 85 1 TGGCGATCGC 0.997084 -216 CGGCTAGCAATGGCGATCGCCGTAGTTTAC 124 257 1 TGGCGATCGC 0.997084 -44 GAGACTTTTTCGGCGATCGCACTAGATATA 126 96 0 CGGCGATCGC 0.991674 -186 GGTTTCCGGACGGCGATCGCCTAGATGGAG 131 50 0 CGGCGATCGC 0.991674 -235 TAGACCACGTTGGCGATCACCTAACCAATG 134 113 1 TGGCGATCAC 0.96228 -188 TTCATATCCCTGGCGATCGGGGTCTAACTA 135 35 1 TGGCGATCGG 0.993194 -84 ********** Masking position 6 Map Score: 107.154 Number of sites scoring better than the average of aligned sites = 6310 Number in coding regions = 5743 Number in noncoding regions = 567 Number of orfs with sites within 600 bp upstream = 367 Fraction of orfs with sites within 600 bp upstream = 0.0589464 Motif number 2 CCCTTAGAAGAGTTCAGGGGATATATTTTGGCG 2 57 0 AGCAGGGGAA 0.875022 -67 ATTATTGTAGAGGACTGGGGGACAGGGAAATGG 5 44 1 AGCTGGGGGC 0.865916 -218 CAAACAAAGAAAATTAGGGGAGTTTCTCCCGTT 6 50 1 AATAGGGGAT 0.520736 -157 TATTATGGCTAGGCAAGGGGATTAATTGAGAAT 13 223 1 AGAAGGGGAT 0.519533 -78 ACTTTCTAGGGGAAATGGGGACCAATTGAACAT 14 81 0 GGATGGGGAC 0.743438 -125 CAAATTTTGGGAGCTAGGGGACTTT 15 3 0 GATAGGGGAT 0.570307 -136 TAGGGCGATCACCTTAGGGGAACTGGGGTCTAA 15 43 0 ACTAGGGGAC 0.435268 -96 AAGCTCCGGCAAGGTTGGGGGATTTGGACTTAC 17 221 1 AATTGGGGGT 0.680357 -80 GACAACCAAAGACGTTGGGGGGCAAATCATTCC 24 26 0 GATTGGGGGC 0.79262 -139 AGGCAGAGTCAGCCCAGGGGACAAAAACTTCCT 25 62 0 AGCAGGGGAA 0.875022 -39 CAACAAAATTAAGCTGGGGGAGCCGGACTTTCT 26 125 0 AATGGGGGAC 0.442661 -47 AGAAAAGGGGAAAATTCCCAATA 26 159 0 AGAAGGGGAA 0.771473 -13 AAGCCAGAGTACCCTAGGGGAGAGCGAGTAAAT 30 107 0 ACTAGGGGAA 0.620771 -160 CTAAATTTGGGGGTCAGGGGGGCTTTTAAAGCA 31 129 0 GGCAGGGGGC 0.840917 -172 CTGACCCCCAAATTTAGGGGGAAACTGACTGAA 31 145 1 AATAGGGGGA 0.816607 -156 TTAGTGAGGAGATTTAGGGGGCAGAATAAAACT 31 201 1 GATAGGGGGA 0.844702 -100 ATCCCTAGCTAGGGTAGGGGATATTGTTTCTAG 34 98 1 AGTAGGGGAA 0.851521 -203 TTGGTTGATTGGGATGGGGGAGACCTTACCATA 42 54 1 GGTGGGGGAA 0.776964 -100 GGCAGAGAGCTGGGGAAAGTGATAACTA 44 6 1 AGCTGGGGAA 0.912654 -163 GCGGGAGCAAAATACTGGGGAAAATACAGAGCA 44 63 1 AACTGGGGAA 0.86073 -106 GCACGTTCACGGTAATGGGGGCATCAAGGGAAG 46 50 0 GGATGGGGGA 0.889847 -23 TCGTTGCTTAAAAATTGGGGAATTTATTTATGT 56 48 1 AATTGGGGAT 0.61854 -40 GCCTTTGAGTAGACTGGGGGACACTGGCTGGGC 59 179 0 AGTGGGGGAA 0.740381 -60 CTAACATTTTAAAGCAGGGGACAGTCTACCGCC 65 81 0 AACAGGGGAA 0.805496 -56 TCCCTAATATGGATATGGGGACAGGCTGGCCCG 69 105 1 GGATGGGGAA 0.860221 -89 AGCTCAGGACAACCCTGGGGAGACGTGCTTGAG 79 50 0 AACTGGGGAA 0.86073 -50 AATGCCATGGAACAATGGGGGTAACTTGGTTGG 83 77 1 AAATGGGGGA 0.796403 -67 CCAATGGTAAAATCATGGGGGTATAGATATCTT 86 40 0 AAATGGGGGA 0.796403 -227 GTTAACCTTCAACCATGGGGGCAAAGCAACAAG 87 29 0 AAATGGGGGA 0.796403 -272 CCGGTTCACCGCCGTTGGGGAATGGAGGCGTCA 87 219 0 GCTTGGGGAT 0.488707 -82 GGAAAAGGAAGGGGAATTGCATCAAGA 90 5 1 AAAAGGGGAT 0.390089 -157 AATCGAATTTAGTAATGGGGGACGTGGACGGGG 90 119 0 AGATGGGGGC 0.756919 -43 GCGGTGCGGCGACAATGGGGACAAAGAATGGGT 92 56 1 GAATGGGGAA 0.784488 -191 CGATCGCCAGAGGAATGGGGGCAAAATTTTCGC 95 62 0 AGATGGGGGA 0.86865 -48 AGCCTTGGGGGGGTCAGGGGGGCAGTTCAAAAA 101 14 0 GGCAGGGGGC 0.840917 -43 TGACCCCCCCAAGGCTGGGGGGAATTTATCGGT 101 31 1 AACTGGGGGA 0.890263 -26 GTTACCCCTCGCCCCAGGGGAAATGGCAATGGG 103 120 0 GCCAGGGGAA 0.709399 -63 CAAACATCCCGATTCTGGGGAAACTTACT 104 7 0 GACTGGGGAA 0.883034 -125 AAGGTTCATGGGGATAGGGGGATGGGTAACTGA 104 67 1 GGTAGGGGGT 0.746545 -65 GAGATAGCTGACTCCTGGGGGCAACCAAAATCA 108 72 0 ACCTGGGGGA 0.796535 -48 GTTTATTTTTAGAGCTGGGGAGATTTCACCTCG 112 155 1 AGCTGGGGAA 0.912654 -146 ATTTGTAACAGCTATTGGGGAGCTAATACAGCG 119 54 1 GCTTGGGGAC 0.584212 -24 CTTTTTCCCTGGGCCTGGGGAAATTAATCCATT 120 16 1 GGCTGGGGAA 0.927344 -55 CGGAGAGTTGGAAGCGGGGGATTTAAGTGCGGA 121 178 1 GACGGGGGAT 0.44621 -123 CTCGGTTAATGGTCTTGGGGGGATGGCAGTGAT 122 19 0 GGTTGGGGGA 0.932082 -94 GGCGATCGCCAGTGTTGGGGGATGATCGACGGC 124 73 0 AGTTGGGGGT 0.782539 -228 GGGCCAGCTTGGCATTGGGGACAACAAAAACCC 124 135 1 GGTTGGGGAA 0.9127 -166 TGAAACTGGTGGATCAGGGGATTTTTAAAATTT 125 14 0 GGCAGGGGAT 0.732578 -183 AAACTTGGGGGGCTAGGGGGGCATTTAAAACAG 127 132 0 GGAGGGGGGA 0.729125 -169 CTAGCCCCCCAAGTTTGGGGGGAAAGTATTAAA 127 149 1 AATTGGGGGA 0.869199 -152 TAAATCCCCCAATACTGGGGGACTTTTAATACT 127 173 0 AACTGGGGGC 0.792525 -128 AGTATTGGGGGATTTAGGGGGCAAAATACAACT 127 190 1 GATAGGGGGA 0.844702 -111 CTCCATTGAGGGGCAGGGGGGGAATGTCTAACT 131 107 1 GGAGGGGGGA 0.729125 -178 ACCTCTCCCTGCCATTGGGGGTATGCCCGCGCC 139 112 1 GCTTGGGGGA 0.796629 -84 AATGTTGGGGAATTTAGGGGGTAAATGACAACT 142 70 1 AATAGGGGGA 0.816607 -44 TGGCCGAACCAAGATTGGGGAGAAGGTTCCCAG 145 106 1 AATTGGGGAA 0.835048 -195 ** ******* * Masking position 7 Map Score: 53.8556 Number of sites scoring better than the average of aligned sites = 2564 Number in coding regions = 2123 Number in noncoding regions = 441 Number of orfs with sites within 600 bp upstream = 319 Fraction of orfs with sites within 600 bp upstream = 0.0512367 Motif number 3 ACTCCAAAGACAACCCAAGGCCATTCCAGGCT 4 58 0 CACCAAGGCC 0.87466 -39 CTTTCCAATCCTGGTTTTGGAG 11 61 0 CTCCAATCCT 0.752265 -12 ATTGCCATTCCCGTGCTGTCAGATTTC 14 6 1 CACCCGTGCT 0.659539 -200 GGACTTTCTGCAATCCAATGCCGATGATAACG 26 102 0 CACCAATGCC 0.826073 -70 TTGCCCCATACTGCCCCAGGCTAAATACCCTC 28 47 0 CTCCCAGGCT 0.907358 -65 TGTATTTTAGCTTCCCATGGCTAGCCAATGGC 30 169 1 CTCCATGGCT 0.71289 -98 CAAGGTCTTTGATACCCATCCCCTATGTTCAA 33 225 0 GACCCATCCC 0.611865 -76 TTCTCTCGGACCAGCCATTCCCCACATCACCA 34 143 0 CCCCATTCCC 0.722327 -158 GGTCATTAAAGTCTCCCGGGCTTTTGTCCCGC 34 216 0 GTCCCGGGCT 0.711281 -85 GACCCAGGAACAACCCCTGCCTCCGCCATATT 36 52 0 CACCCTGCCT 0.487742 -46 TTTACTACAGGTACCCCAGGCCAGAAAACCTA 39 35 0 GTCCCAGGCC 0.898729 -108 TGGCGGGTTAGTTTCCAGTGCCTGCCATTGCC 41 67 1 GTCCAGTGCC 0.753911 -22 ATGGTAAGGTCTCCCCCATCCCAATCAACCAA 42 54 0 CTCCCATCCC 0.92294 -100 AGAGTAAATCCTGGCCAAGGCTCCATAAATCC 45 40 1 CTCCAAGGCT 0.869556 -32 GAGGCGAGATCAAGCCAGTGCCGGTCAATGAG 50 47 1 CACCAGTGCC 0.779708 -57 CCTAACCCAGGTAGCCAGGGCCAACCCATTCT 51 34 1 GTCCAGGGCC 0.818221 -154 AGAAACAGTCCTGGCCAATCCTAACTAAGCTA 54 49 0 CTCCAATCCT 0.752265 -178 CCAAATTCGGCCTTCCCGTGCCTATCCACCGC 54 204 1 CCCCCGTGCC 0.91952 -23 TTTTAGGAAGCTGGCCCATGCCAACGGGAAGT 61 99 1 CTCCCATGCC 0.947076 -120 TGGGGACAGGCTGGCCCGGGCCGGCGCAATTT 69 120 1 CTCCCGGGCC 0.951441 -74 TGTTAAACCCTCCAGTGCCCCAAAAGCTG 71 8 1 CCCCAGTGCC 0.886056 -86 AGCCTTATATCCTACCATGCCCGCCGGGCAAG 80 106 0 CCCCATGCCC 0.792621 -76 CCCAAAAACACTGACCCAGCCTATCACCCTTG 83 37 1 CTCCCAGCCT 0.86764 -107 GCCAGGGAGGCTTTCCATGGCTAACCTTAAAG 86 202 1 CTCCATGGCT 0.71289 -65 ATGGATTGACGCCTCCATTCCCCAACGGCGGT 87 213 1 GCCCATTCCC 0.467529 -88 CTTTTCCCCTCTGTCCCATGCTTTGTCTATAG 87 259 1 CTCCCATGCT 0.869556 -42 GTTGATCAAACTGCCCCAGCCTTACCCCTAAC 88 87 1 CTCCCAGCCT 0.86764 -31 TGGTAAAAGCGAAACCAAGCCCAAACAGTATT 92 192 0 GACCAAGCCC 0.611865 -55 CCCCCCTGACCCCCCCAAGGCTGGGGGGAATT 101 25 1 CCCCAAGGCT 0.850995 -32 GAATTTTTCAGTTACCCATCCCCCTATCCCCA 104 75 0 GTCCCATCCC 0.801688 -57 GCATTATTGTCCAGCCCAGCCCTTAGTTTTTG 116 140 1 CCCCCAGCCC 0.937797 -58 CGGAATTACCCAAGCCAGTGCCGAGGAACGAA 117 45 1 CACCAGTGCC 0.779708 -157 TCCCCTGGCTCCCAATCCCTAGAAGCGGA 118 61 0 GCCCAATCCC 0.70214 -19 TTTTTTCTTTCCTGCCCTGCCTATAGCCAAGA 121 119 1 CCCCCTGCCT 0.676573 -182 GGTTTTTGTTGTCCCCAATGCCAAGCTGGCCC 124 135 0 GTCCAATGCC 0.804343 -166 TTTTCCATCCCTTACCCATGCCAGAACCCCAT 124 222 0 CTCCCATGCC 0.947076 -79 AGATGAAGCGCTGGCCCATGCCCCACTGATTT 130 14 1 CTCCCATGCC 0.947076 -79 GTTAGACATTCCCCCCCTGCCCCTCAATGGAG 131 107 0 CCCCCTGCCC 0.848843 -178 TGGCGATCACCTAACCAATGCTCGTAGATATC 134 123 1 CTCCAATGCT 0.819398 -178 ATTTTCACTCCCCACCAGGGCCTTAGTTAGTC 136 53 1 CCCCAGGGCC 0.91952 -99 ** ******** Masking position 6 Map Score: 40.8254 Number of sites scoring better than the average of aligned sites = 2339 Number in coding regions = 2150 Number in noncoding regions = 189 Number of orfs with sites within 600 bp upstream = 194 Fraction of orfs with sites within 600 bp upstream = 0.0311597 Motif number 4 AATTAATAGCCACTACAGCAATATTTGCAGG 5 137 0 CCTACAGCAA 0.554274 -125 CAGTGTAATTCACCCCGGGAAACCGTTATCT 5 215 1 CCCCCGGGAA 0.858154 -47 AGGCAAAAAAATCCCCGGCTAACGGGAGAAA 6 72 0 ACCCCGGCTA 0.925108 -135 TTTTCACTAAAGCTCCGGCAAGGTTGGGGGA 17 212 1 ACTCCGGCAA 0.944122 -89 TGGAAAGGAGCCCTCCGGCAAACGTGATATA 24 80 1 CCTCCGGCAA 0.964662 -85 ACTAAATAAAAGCTCCGACAATATTAAAGGG 26 26 0 ACTCCGACAA 0.617972 -146 ACTTGTGCGGCCCTCCGGCAACATTGACCCC 31 53 1 CCTCCGGCAA 0.964662 -248 TCCTCACTAAAGCTCCGGCAATACTAGAGGA 31 180 0 ACTCCGGCAA 0.944122 -121 CAATCAAAACCGCCACGGCGATCGCCAAGGA 35 130 0 CCCACGGCGA 0.807368 -78 TGTAGTAAATCTCCCCGGCAACCTCCGTTAA 39 58 1 CCCCCGGCAA 0.983949 -85 CATACCAAAAATCTCCAGCTAATAAGGGGGA 42 83 1 ACTCCAGCTA 0.539072 -71 GTTTACGCAACTCCCCAACAAGTGCAATACC 43 186 1 CCCCCAACAA 0.555122 -115 GGCTTGATCTCGCCTCAGCAAAATTTTGACT 50 32 0 CCCTCAGCAA 0.693869 -72 GCCCAGAATAACCCACGGCAAATCTGCGCTA 55 161 1 ACCACGGCAA 0.890461 -65 CCTCCCCCCCAGCAACTTAGACTAG 62 5 1 CCCCCAGCAA 0.928742 -253 AGAGCATGCCAACCCCAGCAAGGGAGCTGGA 68 47 0 ACCCCAGCAA 0.889708 -76 CTTCAGATCTTCGGCTACGGCGTATTT 82 7 1 ACTTCGGCTA 0.488913 -129 TTGGTCAATTATCCCCGGCGATCGCCGTCCT 84 16 0 ACCCCGGCGA 0.923709 -131 AAACGGCATAATCCCCGGGAACATTTACCAA 85 166 0 ACCCCGGGAA 0.789226 -135 TCGAGGGGAAAACCACGGCTAAACTTAAAGA 98 61 0 ACCACGGCTA 0.725771 -70 CCGTGGTTTTCCCCTCGACAAAAGGTCATGA 98 74 1 CCCTCGACAA 0.505106 -57 GGGGAGATTTCACCTCGGCTACGGTCAGGGT 112 171 1 CCCTCGGCTA 0.776324 -130 CCCATTGGTAAACTACGGCGATCGCCATTGC 124 263 0 ACTACGGCGA 0.536007 -38 GGATGGTTCTCTCTCCGGCAATATTAGTTCA 132 12 1 CCTCCGGCAA 0.964662 -125 * ********* Masking position 11 Map Score: 22.3829 Number of sites scoring better than the average of aligned sites = 1108 Number in coding regions = 993 Number in noncoding regions = 115 Number of orfs with sites within 600 bp upstream = 125 Fraction of orfs with sites within 600 bp upstream = 0.0200771 Motif number 5 TACTGCACTGGTATTTTGCCCGTTAGGGCTTT 7 109 1 GTTTTGCCCG 0.74062 -134 ACTAACCATTGAATTTTACCCCATCAGGGCTA 15 89 0 GATTTACCCC 0.872338 -50 GGCCGCTGTGGTTTGTGACCCCAATTAATTGA 16 227 1 GTGTGACCCC 0.719845 -74 TGAATCTGGAATGATTTGCCCCCCAACGTCTT 24 19 1 ATTTTGCCCC 0.863852 -146 TGGTATTATCGTTTTTTGCTCCTCTCACCGTG 25 24 1 GTTTTGCTCC 0.648623 -77 GCTTCAGGAAGTTTTTGTCCCCTGGGCTGACT 25 57 1 GTTTGTCCCC 0.856624 -44 AGGACTTTCAGTCAGTTTCCCCCTAAATTTGG 31 152 0 GTGTTTCCCC 0.835155 -149 ATTTTCCCCAGTATTTTGCTCCCGCTCCCCTA 44 56 0 GTTTTGCTCC 0.648623 -113 AGTTGAGACATAAATTTACCCCAT 53 52 1 TATTTACCCC 0.602596 -14 GAAAGGTTAAGAAATTAACCCCCGGTTGTCTT 62 171 0 GATTAACCCC 0.56898 -87 ATTTTTTGCTGTTGTTTACCCCAGGGATGTTT 68 96 1 GTTTTACCCC 0.936654 -27 GCCTAGAATGGTTCTTAGCCCCAAATTTTTTT 72 27 0 GTTTAGCCCC 0.883778 -48 TTTGTCGGTAATTATTTGCCCCGGCCAACGGT 77 108 1 ATTTTGCCCC 0.863852 -50 CAAGCCCTCCAAGTTTAGCCCC 87 1 0 AATTAGCCCC 0.361616 -300 GGAGGGCTTGTTGCTTTGCCCCCATGGTTGAA 87 23 1 TTTTTGCCCC 0.897276 -278 AACCGGAGGAGAGCTTTTCCCCTCTGTCCCAT 87 246 1 GATTTTCCCC 0.859139 -55 TCGGAACCCATTCTTTGTCCCCATTGTCGCCG 92 62 0 TTTTGTCCCC 0.570045 -185 CAATTTCACCAATCTTTTCCCC 93 1 0 AATTTTCCCC 0.495754 -286 TTCAATTTTAGTCCTTAGCCCCCGTCTGCGAA 94 64 0 GTTTAGCCCC 0.883778 -53 ACCAGGGCGAAAATTTTGCCCCCATTCCTCTG 95 56 1 AATTTGCCCC 0.745687 -54 AAGTTTAGCCGTGGTTTTCCCCTCGACAAAAG 98 66 1 GTTTTTCCCC 0.929568 -65 ATTATAAAAGGTGAGTTACCCCTCGCCCCAGG 103 135 0 GTGTTACCCC 0.850209 -48 AGTAAGTTTCCCCAGAATCGGGA 104 2 1 GTGTTTCCCC 0.835155 -130 AGAGGTGGTATATGGTTGCCCCACGTGAAGCA 105 71 0 TAGTTGCCCC 0.607765 -152 CATTGATGATTTTGGTTGCCCCCAGGAGTCAG 108 66 1 TTGTTGCCCC 0.770272 -54 CTTACTCCAAGATTTTTGCCCCTGGGATTTTC 111 33 0 GATTTGCCCC 0.94789 -50 TTGCAGCTCATTGCTTGGCCCCATTGTGCCAG 113 27 0 TTTTGGCCCC 0.798148 -36 GCCAGGGGTTTTTGTTGTCCCCAATGCCAAGC 124 141 0 TTTTGTCCCC 0.570045 -160 CCCCATGGAAGTCTTTGACCCCACTCCTCCCC 124 196 0 GTTTGACCCC 0.870022 -105 AACACTGGCAGATTTTTACCCGGCTTTCCCTG 125 45 0 GATTTACCCG 0.331409 -152 TTGCAAAGTTGTATTTTGCCCCCTAAATCCCC 127 197 0 GTTTTGCCCC 0.975224 -104 CGGTAAAGTTGTCATTTACCCCCTAAATTCCC 142 77 0 GTTTTACCCC 0.936654 -37 ** ******** Masking position 6 Map Score: 27.6248 Number of sites scoring better than the average of aligned sites = 836 Number in coding regions = 729 Number in noncoding regions = 107 Number of orfs with sites within 600 bp upstream = 120 Fraction of orfs with sites within 600 bp upstream = 0.019274 Motif number 6 TCTCCCGTTAGCCGGGGATTTTTTTGCCTCA 6 74 1 GCCGGGATTT 0.977711 -133 CAAACACCTTCTCAGGGGATTCACAAAACTT 31 237 1 CTCGGGGATT 0.451213 -64 CTAGCAGCTTCTCTGGGATTTAGAGCAATTA 41 26 0 CTCGGGATTT 0.900726 -63 TCTGAGGTGTGCCTGGGGATTCGCCCTCACC 55 41 0 GCCGGGGATT 0.798993 -185 ATCCTAAGAAGCTTGGGATTTGTGGGCTCAT 61 40 0 GCTGGGATTT 0.672001 -179 CGCTATGATCCTCCGGGATTTGCATTAATTT 62 125 1 CTCGGGATTT 0.900726 -133 TGTTGTTTACCCCAGGGATGTTTTGATT 68 105 1 CCCGGGATGT 0.902274 -18 ACTTAGTGCCCCCAGGGAATTTTTCTGACT 75 10 0 CCCGGGAATT 0.889238 -81 GACGGCGATCGCCGGGGATAATTGACCAACC 84 18 1 GCCGGGATAA 0.573222 -129 TCTACGCCGGGCCGGGGATTTTAAGGCCTAT 85 89 1 GCCGGGATTT 0.977711 -212 GGTAAATGTTCCCGGGGATTATGCCGTTTTA 85 168 1 CCCGGGATTA 0.889238 -133 TGGCCACGGAGCCAGGGATTT 91 1 0 GCCGGGATTT 0.977711 -29 GCCTTTGCCTCTCTGGGGTTTACCTGGTAAT 97 169 0 CTCGGGGTTT 0.802034 -79 AGATTTTTGCCCCTGGGATTTTCCACCGATG 111 25 0 CCCGGGATTT 0.975345 -58 ATGCGAATTAGCCCGGGATGTGGATTTGGCA 112 61 0 GCCGGGATGT 0.911011 -240 AGAGTTGGAAGCGGGGGATTTAAGTGCGGAC 121 181 1 GCGGGGATTT 0.752264 -120 TACTGTTCATGCCAGGGGTTTTTGTTGTCCC 124 152 0 GCCGGGGTTT 0.951425 -149 CATAATCAGGCTCCGGGATTATTAACGGGAT 129 17 1 CTCGGGATTA 0.648051 -29 GACCCCGATCGCCAGGGATATGAACTTTGGA 135 28 0 GCCGGGATAT 0.868737 -91 *** ******* Masking position 6 Map Score: 18.157 Number of sites scoring better than the average of aligned sites = 583 Number in coding regions = 526 Number in noncoding regions = 57 Number of orfs with sites within 600 bp upstream = 68 Fraction of orfs with sites within 600 bp upstream = 0.0109219 Motif number 7 TTCTCAATTAATCCCCTTGCCTAGCCATAAT 13 224 0 ATCCCTTGCC 0.768661 -77 ATTGCCATTCCCGTGCTGTCAG 14 2 1 TTGCCTTCCC 0.807585 -204 TGGGCAAAGTTTGGCATTGCCGCCAGAAAAG 17 88 0 TTGGCTTGCC 0.779783 -213 GAACAAATTTTAGCCCTTTCCGTTCCCGTAC 29 12 1 TAGCCTTTCC 0.670037 -157 AGCGAAAATGCTGACTTTGCCATTTTACCGA 30 53 1 CTGACTTGCC 0.766664 -214 ATCTTTACGATCGCCATTGGCTAGCCATGGG 30 182 0 TCGCCTTGGC 0.597454 -85 TCTCTCGGACCAGCCATTCCCCACATCACCA 34 143 0 CAGCCTTCCC 0.662305 -158 TAACATTATCCTCCCGTTGCCTTTTTCACCA 40 55 1 CTCCCTTGCC 0.875566 -31 TTTCCAGTGCCTGCCATTGCC 41 78 1 CTGCCTTGCC 0.978039 -11 CTTCGCCGACAAGCCCTTTCCTAATGTATCT 54 143 0 AAGCCTTTCC 0.579177 -84 GTTGACGACCATGGCCTTGCCGTCAGTTAGA 55 101 0 ATGGCTTGCC 0.705878 -125 TTTGACGAACTTCCCGTTGGCATGGGCCAGC 61 108 0 TTCCCTTGGC 0.517001 -111 ACGATTGTTTTTGCCCTTGCCATAGATTTTT 80 11 0 TTGCCTTGCC 0.968777 -171 CCAATTGTTTTTGCCTTTGCCATTAGAGGCT 86 108 1 TTGCCTTGCC 0.968777 -159 TTCAAGCATTTTGCCATTTCCAACT 86 252 1 TTGCCTTTCC 0.861826 -15 GTTCTGAAAAAAGCCATTGCCACTCAATTTC 93 26 0 AAGCCTTGCC 0.872556 -261 GTTTAATGCTATGCCTTTGCCTCTCTGGGGT 97 181 0 ATGCCTTGCC 0.954607 -67 CATAAACCCATTGCCATTTCCCCTGGGGCGA 103 114 1 TTGCCTTTCC 0.861826 -69 CAACATTTTCCAGCCGTTGCCCACCCATTGG 109 15 0 CAGCCTTGCC 0.935479 -31 CAGTGCATTAACGCCGTTGCCCAATGGAGTG 117 152 0 ACGCCTTGCC 0.821656 -50 CCACCATGCGCTGCCCTTGGCTATTAATTCT 121 82 1 CTGCCTTGGC 0.906749 -219 GGTAAAATTCCTGCCATTTGCGCCGTCGATC 124 52 1 CTGCCTTTGC 0.661553 -249 AAAAGCTTGTCTGACCTTGCCACTCGTGATG 126 46 1 CTGACTTGCC 0.766664 -236 ***** ***** Masking position 7 Map Score: 21.1154 Number of sites scoring better than the average of aligned sites = 750 Number in coding regions = 691 Number in noncoding regions = 59 Number of orfs with sites within 600 bp upstream = 74 Fraction of orfs with sites within 600 bp upstream = 0.0118856 Motif number 8 AACGATGAGAGTTCAATGTCCCATAGGAGATG 7 21 0 GTTCAGTCCC 0.345066 -222 CCACAAGGTTGTCCCAATCGCCACAGCACATT 7 64 1 GTCCCTCGCC 0.457328 -179 TTCAATTGGTCCCCATTTCCCCTAGAAAGTTA 14 84 1 CCCCATCCCC 0.977563 -122 AGAGGTTAGACCCCAGTTCCCCTAAGGTGATC 15 38 1 CCCCATCCCC 0.977563 -101 CCCGGACTTTCCTCAGATTCCCTGTGACAGGA 16 139 1 CCTCATTCCC 0.740843 -162 TTAATTGAAACTTCATTGCCCCCTCCGTAGTC 16 251 1 CTTCAGCCCC 0.795742 -50 CAACTCCTAGCACCAATTTCCCAAGACTACGG 16 275 0 CACCATTCCC 0.626828 -26 GGAAGTGTAAGTCCAAATCCCCCAACCTTGCC 17 228 0 GTCCATCCCC 0.884981 -73 AGCTTTTAACCCTCCCTGTCCCAACCTATCGA 23 158 1 CCTCCGTCCC 0.636646 -38 ATTGCAGAAAGTCCGGCTCCCCCAGCTTAATT 26 120 1 GTCCGTCCCC 0.345418 -52 GGCCGGATAACCCCATTTACCCTTTCCCAAAG 30 137 0 CCCCATACCC 0.778219 -130 GCTTTAAAAGCCCCCCTGACCCCCAAATTTAG 31 130 1 CCCCCGACCC 0.682612 -171 CGCCAATTTGGACCAGTTCCCCGACCATTGAA 33 198 1 GACCATCCCC 0.684148 -103 ACCAGCCATTCCCCACATCACCAGGAATCGGA 34 134 0 CCCCATCACC 0.650177 -167 CAGTATTTTGCTCCCGCTCCCCTATGATAATT 44 48 0 CTCCCTCCCC 0.9154 -121 AAGGTTACGTCCCCAAATTGCCTTGGTA 50 86 1 CCCCATTGCC 0.724635 -18 CATGGGGAATGTCCATCGTCCCAGCCTTTGTT 52 70 0 GTCCAGTCCC 0.722267 -31 ATCCACAGGAGTCCAACGCCCCT 62 245 1 GTCCAGCCCC 0.889261 -13 TCCAGAATTCCTTCAGATTCCCTAATATGGAT 69 87 1 CTTCATTCCC 0.547276 -107 TGTTAAACCCTCCAGTGCCCCAAAAGCTGTC 71 10 1 CTCCAGCCCC 0.950566 -84 GAAACCCTAACCCCATGGCCCCATCATAGTTT 77 32 1 CCCCAGCCCC 0.978482 -126 ACGGACTACTCTTCAGCTTCCCTAACTCTAGT 80 52 1 CTTCATTCCC 0.547276 -130 CGTATTTCTGCCCCAATTCGCCTAAATACTGA 82 31 1 CCCCATCGCC 0.890421 -105 TGGATTGACGCCTCCATTCCCCAACGGCGGTG 87 214 1 CCTCCTCCCC 0.838292 -87 GAGAGCTTTTCCCCTCTGTCCCATGCTTTGTC 87 254 1 CCCCTGTCCC 0.545786 -47 TTCTACCCCCGTCCACGTCCCCCATTACTAAA 90 113 1 GTCCATCCCC 0.884981 -49 TTCAATTTTAGTCCTTAGCCCCCGTCTGCGAA 94 64 0 GTCCTGCCCC 0.395858 -53 TTTTGAACTGCCCCCCTGACCCCCCCAAGGCT 101 15 1 CCCCCGACCC 0.682612 -42 AGTTACCCATCCCCCTATCCCCATGAACCTTA 104 66 0 CCCCCTCCCC 0.962388 -66 CTATCTCCGCCCTCCGATCGCCATGGTTAAAA 108 98 1 CCTCCTCGCC 0.491566 -22 CATTGCTTGGCCCCATTGTGCCAGAGAATGTT 113 19 0 CCCCAGTGCC 0.733082 -44 GAGGGGGAGCGTCCACAGTCCCAGGGGCGGCA 115 49 0 GTCCAGTCCC 0.722267 -252 ATTATTTAACGTTCACTTCCCCTAACATCATC 116 172 1 GTTCATCCCC 0.609197 -26 ACGGTAACAACACCATCTCCCC 118 1 0 CACCATCCCC 0.838365 -79 TATAGTTTTTGCTCACTTCCCCTAGCTGATCT 121 21 1 GCTCATCCCC 0.786612 -280 TCGAATTAAGCCCCATTTTGCCATACTCGGTT 122 45 0 CCCCATTGCC 0.724635 -68 TTTTAAATGCCCCCCTAGCCCCCCAAGTTTGG 127 135 1 CCCCCGCCCC 0.963905 -166 GTATTTTGCCCCCTAAATCCCCCAATACTGGG 127 187 0 CCCTATCCCC 0.611505 -114 TTAGACATTCCCCCCCTGCCCCTCAATGGAGA 131 106 0 CCCCCGCCCC 0.963905 -179 AAATCAATAACACCAAAGCACCGAGTTGAGAT 136 25 0 CACCAGCACC 0.187598 -127 GTCATTTACCCCCTAAATTCCCCAACATTTGG 142 67 0 CCCTATTCCC 0.337638 -47 ***** ***** Masking position 11 Map Score: 51.0258 Number of sites scoring better than the average of aligned sites = 2194 Number in coding regions = 1856 Number in noncoding regions = 338 Number of orfs with sites within 600 bp upstream = 234 Fraction of orfs with sites within 600 bp upstream = 0.0375843 Motif number 9 ATCCCATCGCAATTTTGCTTAAACTCGACTAT 1 47 0 AATTTTCTAA 0.67349 -104 AAATTGGATTAATTTTGCTTACTATCCCATCG 1 70 0 AATTTTCTAC 0.866694 -81 GGCAATGCCAAACTTTGCCCACAGCCGCCGAC 17 98 1 AACTTTCCAC 0.884585 -203 GGGAAACTAAAACTTTGCCGACAGGCCCTCGC 26 71 1 AACTTTCCAC 0.884585 -101 GGCAGAATAAAACTTTCCAAACACCTTCTCAG 31 220 1 AACTTTCAAC 0.795961 -81 AAATTTTACTAACAAAAAGGAAT 52 2 1 AATTTTCTAC 0.866694 -99 GCCCCCAGGGAATTTTTCTGACT 75 2 0 AATTTTCTAC 0.866694 -89 TCTAGTGAGGAATTTTGCAAAATGCAAGCTTG 80 78 1 AATTTTCAAA 0.488468 -104 GTTTTTATGTAACTTTGCCAACACGTCATAGG 85 115 0 AACTTTCCAC 0.884585 -186 GGTAAAACTGAATTTTGCTTAAAGCTCCTTCA 100 91 0 AATTTTCTAA 0.67349 -31 AACTTTTCAAACACTTTCTTAC 107 289 0 AACTTTCAAC 0.795961 -12 AGCAACTTTACCCAATGTCGGAACA 115 4 1 AACTTTCCAA 0.708592 -297 CCGGTCAAATTTTCCTTAAAAGTGGCTTT 120 52 0 AATTTTCTAA 0.67349 -19 GGTCAAACTTAATTTTCCTGAACTAGTCTGAC 125 150 0 AATTTTCTAA 0.67349 -47 GGCAAAATACAACTTTGCAAACAAGCTATTAT 127 209 1 AACTTTCAAC 0.795961 -92 ACTGCTATTAAATTTTTCTGACGCCACGCCCC 132 105 0 AATTTTCTAC 0.866694 -32 GGTAAATGACAACTTTACCGACGGATTGCCAA 142 89 1 AACTTTCCAC 0.884585 -25 GTCGGTTCACAATTTTCCTTACTGCCCAAATT 144 13 0 AATTTTCTAC 0.866694 -194 ****** ** ** Masking position 6 Map Score: 11.9764 Number of sites scoring better than the average of aligned sites = 224 Number in coding regions = 123 Number in noncoding regions = 101 Number of orfs with sites within 600 bp upstream = 75 Fraction of orfs with sites within 600 bp upstream = 0.0120463 Motif number 10 AGATTTAAGCAAAGCCAGGCAGAGTCAGC 25 82 0 CAAAGCCAGG 0.702576 -19 AAAATCTTTACAAAGCCTAGCCTGTTTCTC 34 170 0 CAAAGCCTAG 0.614233 -131 GCGGTCGTAGCCCCGCCCAGGAGTTAACCG 35 52 0 CCCCGCCCAG 0.94524 -156 AACCTCTAACCCCCGCCCAGACTGC 37 79 1 CCCCGCCCAG 0.94524 -15 CTAAATACTGCCAAGCCTAGGCTTCCAGTG 51 77 0 CCAAGCCTAG 0.869356 -111 AGTGACTAAACCACGCCCATATAGTTAGTC 53 16 0 CCACGCCCAT 0.818823 -50 AAATTTCTAGCCCAGCCAGTGTCCCCCAGT 59 170 1 CCCAGCCAGT 0.766676 -69 AGTGGTATAGCACCGCCTAGAATGGTTCTT 72 43 0 CACCGCCTAG 0.660685 -32 GATCGGTTTCCCAAGCCAGGACAACATCTA 78 42 1 CCAAGCCAGG 0.90777 -52 AAAACACTGACCCAGCCTATCACCCTTGGG 83 41 1 CCCAGCCTAT 0.688939 -103 AATAGTAAAACCAAGCCCGGTCTACTCTTT 84 62 1 CCAAGCCCGG 0.940426 -85 GCGTGCAATTCCAAGCCCAGGAAGCTAGCA 84 92 0 CCAAGCCCAG 0.933839 -55 CCTTAAAATCCCCGGCCCGGCGTAGAAACC 85 85 0 CCCGGCCCGG 0.836624 -216 CGCCCTGGAGCAAAGCCAGGAAAAGTTTAT 88 41 1 CAAAGCCAGG 0.702576 -77 ATTGTCGCCGCACCGCCAGTAATGGTATTA 92 42 0 CACCGCCAGT 0.460055 -205 AATATCGGCCCACCGCCTAGGGGATAGCGG 95 11 0 CACCGCCTAG 0.660685 -99 CGCTCCCCCTCCAAGCCAATCGGCAGGGAC 115 70 1 CCAAGCCAAT 0.721384 -231 ACGGAATTACCCAAGCCAGTGCCGAGGAAC 117 44 1 CCAAGCCAGT 0.744687 -158 ATTAATTTCCCCAGGCCCAGGGAAAAAGAA 120 14 0 CCAGGCCCAG 0.803338 -57 GCCGATTGATCCAAGCCCGGAGGGCCTGAC 124 103 1 CCAAGCCCGG 0.940426 -198 AAACGAACTACCACGCCTAGACCTTAATCC 127 245 0 CCACGCCTAG 0.878383 -56 TCTGGTTTGACCCCGCCAATAAACCAGGGG 131 209 1 CCCCGCCAAT 0.759974 -76 ********** Masking position 5 Map Score: 20.287 Number of sites scoring better than the average of aligned sites = 910 Number in coding regions = 854 Number in noncoding regions = 56 Number of orfs with sites within 600 bp upstream = 67 Fraction of orfs with sites within 600 bp upstream = 0.0107613 Motif number 11 AAATGCTACATTCCCTATGTTAATCGCCCTT 2 11 1 TTCCCATGTT 0.829828 -113 CTCTGCTAATTTCCCCATTCTAGGACAGGGG 31 16 1 TTCCCATTCT 0.840276 -285 TTGATACCCATCCCCTATGTTCAATGGTCGG 33 218 0 TCCCCATGTT 0.788872 -83 CATTGGACAGTTCCCTGTTGTTTATAGTCAT 48 100 1 TTCCCGTTGT 0.65231 -201 GTTAGAATAGTTCCCCATTGATTAATTGTTT 52 38 0 TTCCCATTGA 0.616862 -63 ACGATGGACATTCCCCATGTATCTCTGG 52 83 1 TTCCCATGTA 0.530063 -18 ATAAATAAATTCCCCAATTTTTAAGCAACGA 56 48 0 TCCCCATTTT 0.768346 -40 TATTTATGTCTTCCCCATTGTTCTGA 56 72 1 TTCCCATTGT 0.874381 -16 TAGTCAATATTTCCCCGTGCTTTCCATAGAA 60 67 1 TTCCCGTGCT 0.615 -192 CTGTGGGTTTTTCCCTATTCTGGAGTGCTTT 61 71 1 TTCCCATTCT 0.840276 -148 AGCGATACCTTCCCCTATTTATTCTGACTAT 61 193 1 TCCCCATTTA 0.434131 -26 TGGATAGGTGTTCCCTATGGTTAGACCGCTA 62 99 1 TTCCCATGGT 0.886895 -159 ATCAATGCTCTCCCCGATGCCATGAAAATTG 64 102 1 TCCCCATGCC 0.728789 -185 CGCCTCTAACTTCCCTATTTTATCGGTCATT 70 39 1 TTCCCATTTT 0.812336 -24 AGGCAAGAAATTCCCAATGGTAAAATCATGG 86 55 0 TTCCCATGGT 0.886895 -212 ACGGAACAGTTTCCCAATTGTTTTTGCCTTT 86 95 1 TTCCCATTGT 0.874381 -172 TCAGTTTATCTTCCCAATTTCAGGGCATCGA 94 30 0 TTCCCATTTC 0.719217 -87 CCATAAAACTTTCCCAATTCCCTTCCTGACT 119 15 0 TTCCCATTCC 0.756872 -63 AGCCGTTATCCCCGATTGTCCAATGTGGT 122 94 0 TCCCCATTGT 0.842108 -19 GTTTTTGTTGTCCCCAATGCCAAGCTGGCCC 124 135 0 TCCCCATGCC 0.728789 -166 TTGTCTAAGGTTCCCGATGTTGAGCCGGAAC 126 196 1 TTCCCATGTT 0.829828 -86 TTTGCATTGATCCCCGGTTGCTTTTCTACCT 145 193 0 TCCCCGTTGC 0.459654 -108 ***** ***** Masking position 8 Map Score: 15.1626 Number of sites scoring better than the average of aligned sites = 365 Number in coding regions = 303 Number in noncoding regions = 62 Number of orfs with sites within 600 bp upstream = 69 Fraction of orfs with sites within 600 bp upstream = 0.0110826 Motif number 12 GAGAGTTAGGGAGGGAGTTGCGGATTCCTGTCA 16 163 0 GAGGGAGTGG 0.604966 -138 GAAGATTAACGAAGATGGCGGTGGGTTTCT 27 24 1 GAAGATGGTG 0.194605 -20 ACAGAGTAATGACGAAGGAACTGTTATTTCCGG 32 232 1 GACGAAGGTG 0.417378 -69 CTGGTGATGTGGGGAATGGCTGGTCCGAGAGAA 34 142 1 GGGGAATGGG 0.448464 -159 CCAAAAATATGGCGGAGGCAGGGGTTGTTCCTG 36 47 1 GGCGGAGGGG 0.925617 -51 CAGCTAATAAGGGGGAGGGATTGCCAGTTAATC 42 98 1 GGGGGAGGTG 0.911025 -56 TTGACCTGGAGAGGGAGGGGAGGGGTTAATCGG 43 16 1 GAGGGAGGGG 0.883706 -285 ACTTGAATCCGGGGATGTATTTGCTCTGTATTT 44 84 0 GGGGATGTTG 0.561077 -85 GGCGGTGGATAGGCACGGGAAGG 54 214 0 GGCGGTGGGG 0.907708 -13 AGAATAAATAGGGGAAGGTATCGCTTTCCGCTC 61 185 0 GGGGAAGGCG 0.775319 -34 GGAAGTTAGAGGCGATGGGCCGGCAAACTCAAG 70 20 0 GGCGATGGGG 0.885173 -43 ATACAATCAAGGAGGTGTTAGGGTTTAGGGCCT 87 80 0 GGAGGTGTGG 0.458253 -221 ATTCCCCAACGGCGGTGAACCGGAGGAGAGCTT 87 229 1 GGCGGTGAGG 0.291535 -72 AGTTAGTTAGGGGTAAGGCTGGGGCAGTTTGAT 88 91 0 GGGTAAGGGG 0.598891 -27 CGAATCCGACGAGGAAGGTGATGATCCTTGGCG 92 91 1 GAGGAAGGTG 0.652016 -156 CCCCAGCCTTGGGGGGGTCAGGGGGGCAGTTCA 101 18 0 GGGGGGGTGG 0.470893 -39 AATGTTCGATGGGGGTGTTAAGGATAGGTTTTA 103 12 1 GGGGGTGTGG 0.838299 -171 TACTATTCCAGAAGAAGGAACTGGGTATATTGA 107 192 0 GAAGAAGGTG 0.234138 -109 GGATTCAGTAGGGGGTGGCTCGGCGATCGAGTG 114 45 1 GGGGGTGGGG 0.962581 -116 GATGATGTTAGGGGAAGTGAACGTTAAATAATC 116 171 0 GGGGAAGTCG 0.410184 -27 GGGGAGATGGTGTTGTTACCGTAGT 118 3 1 GGAGATGGTG 0.508582 -77 ATGGTCTTGGGGGGATGGCAGTGATGTCAGAAA 122 11 0 GGGGATGGTG 0.863814 -102 CTCAACCCAAGGGGGAGGAGTGGGGTCAAAGAC 124 185 1 GGGGGAGGGG 0.970191 -116 GTTCTGGCATGGGTAAGGGATGGAAAAATTCGG 124 227 1 GGGTAAGGGG 0.598891 -74 ATTGACGATGGTGGGGAATGGTAGAG 128 67 0 GACGATGGGG 0.642829 -16 TCTCCATTGAGGGGCAGGGGGGGAATGTCTAAC 131 106 1 GGGGCAGGGG 0.775848 -179 ******** ** Masking position 1 Map Score: 14.5783 Number of sites scoring better than the average of aligned sites = 1550 Number in coding regions = 1449 Number in noncoding regions = 101 Number of orfs with sites within 600 bp upstream = 119 Fraction of orfs with sites within 600 bp upstream = 0.0191134 Motif number 13 GGATTCTTCCTTTTTCCTGCAAATATTGCT 5 122 1 TTTTTCCTGC 0.614336 -140 TATAAATAGCTCTCCTCTGCTTTTTGACTG 8 81 0 TCTCCTCTGC 0.703943 -41 TTCCAAAATTTTTTCTCTGCAACCGTGAAT 13 104 1 TTTTCTCTGC 0.703619 -197 AGTTAACAGGGTTTTTCTGCTGACT 16 6 0 GTTTTTCTGC 0.198083 -295 CAAAGTTTTAGTTTCCCGGCCAAAACTTGG 26 58 0 GTTTCCCGGC 0.799537 -114 GGCAGTGTACTTTTTCCTGCTGCTTCC 28 8 0 TTTTTCCTGC 0.614336 -104 TCCTTGGGCCTTTTTTCTGCGGTCGTAGCC 35 70 0 TTTTTTCTGC 0.348157 -138 ATAATTGTCTTTTTCTCGGCGTTCCTGCTC 35 98 0 TTTTCTCGGC 0.743042 -110 CTGTAGTAAATCTCCCCGGCAACCTCCGTT 39 57 1 TCTCCCCGGC 0.896239 -86 TAGTTATCACTTTCCCCAGCTCTCTGCC 44 9 0 TTTCCCCAGC 0.719342 -160 GGCGGTAGACTGTCCCCTGCTTTAAAATGT 65 81 1 TGTCCCCTGC 0.619185 -56 CGGTAATTATTTGCCCCGGCCAACGGTTCT 77 113 1 TTGCCCCGGC 0.591479 -45 GTTGGTCAATTATCCCCGGCGATCGCCGTC 84 18 0 TATCCCCGGC 0.571963 -129 GAAACCTTATTTTTCCCTGCAATGGTGAGC 86 145 1 TTTTCCCTGC 0.876242 -122 TACTCACTAATTTCCCCTGCC 93 276 1 TTTCCCCTGC 0.93178 -11 GAAAGCTTGTGTTTCTCTGCTCCATGGTAG 99 17 1 GTTTCTCTGC 0.523339 -46 CGAGGTGAAATCTCCCCAGCTCTAAAAATA 112 158 0 TCTCCCCAGC 0.570944 -143 AAATAATTTCGTTCCTCGGCACTGGCTTGG 117 54 0 GTTCCTCGGC 0.720658 -148 AGTTTTTTTTTCTTTCCTGCCCTGCCTATA 121 114 1 TCTTTCCTGC 0.452662 -187 CTGGCAGATTTTTACCCGGCTTTCCCTGAA 125 43 0 TTTACCCGGC 0.522854 -154 GGGATGGTTCTCTCTCCGGCAATATTAGTT 132 11 1 TCTCTCCGGC 0.660244 -126 AACTTATCCTGTTCCCCTGCATAAAATAGA 132 60 0 GTTCCCCTGC 0.863327 -77 GTTCCACTGATTTCCTCGGCGGCAAGAATT 139 79 0 TTTCCTCGGC 0.847986 -117 ********** Masking position 7 Map Score: 10.5544 Number of sites scoring better than the average of aligned sites = 1122 Number in coding regions = 1006 Number in noncoding regions = 116 Number of orfs with sites within 600 bp upstream = 135 Fraction of orfs with sites within 600 bp upstream = 0.0216833 Motif number 14 GGTATTTTGCCCGTTAGGGCTTTGCTCAAT 7 118 1 CCGTTAGGGC 0.694852 -125 GAATTTTACCCCATCAGGGCTAGGGGCTAG 15 81 0 CCATCAGGGC 0.827688 -58 ATCTACTATTCCGTCAGGACTTGT 19 5 0 CCGTCAGGAC 0.904132 -29 GCTGGTTTTTCCGTCGGGCCTGGTTTAATC 22 36 0 CCGTCGGGCC 0.866728 -47 ATTATTTTGACCAACAGGACTGGGCAATTA 23 65 0 CCAACAGGAC 0.602862 -131 TAAAACTTTGCCGACAGGCCCTCGCGTTAT 26 78 1 CCGACAGGCC 0.979495 -94 CATACTTTCGCCGTCAGGGCAAGAAATCAT 37 12 0 CCGTCAGGGC 0.971888 -82 GCCAAATCAACCGACAATCCTTTGTTGACT 49 45 0 CCGACAATCC 0.654377 -256 AATAGCTTCGCCGACAAGCCCTTTCCTAAT 54 149 0 CCGACAAGCC 0.904852 -78 AAGCTGGCCCCCGTCAGGCCCTCCGGGCTT 124 115 0 CCGTCAGGCC 0.976322 -186 TAACACTTCTCCGACAATGCTAAGCAATTC 131 171 0 CCGACAATGC 0.61352 -114 AGCAAAAACCCCGACAGTCCAAAGTTCATA 135 11 1 CCGACAGTCC 0.904852 -108 TTCCTACAGGGCAACGTCCGTT 145 289 0 CCTACAGGGC 0.759368 -12 ********** Masking position 2 Map Score: 6.65197 Number of sites scoring better than the average of aligned sites = 243 Number in coding regions = 226 Number in noncoding regions = 17 Number of orfs with sites within 600 bp upstream = 19 Fraction of orfs with sites within 600 bp upstream = 0.00305172 Motif number 15 TGAGGCAAAAAAATCCCCGGCTAACGGGAGAA 6 73 0 AAACCCCGCT 0.896202 -134 TATTTTCACTAAAGCTCCGGCAAGGTTGGGGG 17 210 1 AAACTCCGCA 0.947635 -91 GCACTAAATAAAAGCTCCGACAATATTAAAGG 26 27 0 AAACTCCACA 0.612563 -145 TCTCCTCACTAAAGCTCCGGCAATACTAGAGG 31 181 0 AAACTCCGCA 0.947635 -120 ACCATACCAAAAATCTCCAGCTAATAAGGGGG 42 81 1 AAACTCCGCT 0.961409 -73 CTGTTTTCCCAAAACTCCAGTATTGCGGTCGC 93 106 1 AAACTCCGTA 0.799796 -181 GGCGATCGCCAAAGCTCCAGTTTTTTCCCAAT 95 87 1 AAACTCCGTT 0.846144 -23 AATTTTGCTTAAAGCTCCTTCACAAAAGCGGC 100 81 0 AAACTCCTCA 0.736007 -41 GACCTTAAATAAACCTCCAGCTTTCCTATTTT 105 175 0 AAACTCCGCT 0.961409 -48 GTCCGCACTTAAATCCCCCGCTTCCAACTCTC 121 180 0 AAACCCCGCT 0.896202 -121 GTTTAAAGTCAAACCTCCATCTTCGTCATCTC 123 69 1 AAACTCCTCT 0.793306 -32 CAAAATATTCAAATCTCCTGTTCTCAATTCAG 128 30 0 AAACTCCGTT 0.846144 -53 *** **** *** Masking position 3 Map Score: 8.53595 Number of sites scoring better than the average of aligned sites = 131 Number in coding regions = 86 Number in noncoding regions = 45 Number of orfs with sites within 600 bp upstream = 34 Fraction of orfs with sites within 600 bp upstream = 0.00546097