AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00450_synecho_reg_300.orf -o00450_synecho_300.ace -a/home/amcguire/genomes/ORF_synecho.txt -z/home/amcguire/genomes/synecho.fna -g0.48 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.48 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 sll0712 112 cysM; cysteine synthase. [EC:4.2.99.8] #2 sll0711 98 hypothetical protein. #3 sll0710 40 hypothetical protein. #4 sll0709 300 llaI.2; 2nd component required for LlaI restriction activity. #5 slr0963 198 sir; sulfite reductase (ferredoxin). [EC:1.8.7.1] [SP:SIR_SYNY3] #6 slr0964 99 hypothetical protein. #7 slr0965 143 dnaN; DNA polymerase III, beta chain. [EC:2.7.7.7] [SP:DP3B_SYNY3] #8 slr0966 155 trpA; tryptophan synthase alpha chain. [EC:4.2.1.20] [SP:TRPA_SYNY3] #9 slr0967 51 hypothetical protein. #10 sll0939 24 hypothetical protein. #11 sll0938 40 aspartate transaminase. [EC:2.6.1.1] #12 ssl1792 33 hypothetical protein. #13 sll0936 83 hypothetical protein. #14 slr0969 102 cbiH; precorrin methylase. #15 slr0971 82 hypothetical protein. #16 sll0934 195 ccmA; carboxysome formation protein. [EC:5.4.99.5] #17 ssl1784 164 rpsO, rps15; 30S ribosomal protein S15. [SP:RS15_SYNY3] #18 sll0932 100 hypothetical protein. #19 sll0931 171 hypothetical protein. [EC:2.1.1.45] #20 sll0930 43 hypothetical protein. #21 sll0928 111 apcD; allophycocyanin-B. #22 sll0927 168 metX; S-adenosylmethionine synthetase. [EC:2.5.1.6] #23 sll0925 266 hypothetical 23.0 kD protein sll0925. [SP:Y925_SYNY3] #24 slr0974 300 infC; translation initiation factor IF-3. [SP:IF3_SYNY3] #25 slr0676 157 cysC; adenylylsulfate 3-phosphotransferase. [EC:2.7.1.25] #26 slr0677 110 exbB; biopolymer transport ExbB protein. #27 slr0678 35 hypothetical protein. #28 slr0679 162 sun, fmu; sun protein (fmu protein). [SP:SUN_SYNY3] #29 slr0681 237 hypothetical protein. #30 slr0682 33 hisD; histidinol dehydrogenase. [EC:1.1.1.23] #31 sll0650 159 transposase. #32 sll0648 127 lim; lipophilic protein. [EC:2.4.1.-] #33 sll0646 38 cyaA; adenylate cyclase. [EC:4.6.1.1] #34 sll0645 74 hypothetical protein. #35 sll0644 195 esterase. #36 slr0686 254 hypothetical protein. #37 sll0643 300 ureG; urease accessory protein ureG. [SP:UREG_SYNY3] #38 slr1842 106 cysK; cysteine synthase. [EC:4.2.99.8] #39 slr1843 157 zwf; glucose-6-phosphate 1-dehydrogenase (G6PD). [EC:1.1.1.49] #40 slr1844 137 uvrA; excinuclease ABC subunit A. [SP:UVRA_SYNY3] #41 sll1717 93 hypothetical protein. #42 sll1716 134 transposase. #43 sll1714 300 hypothetical protein. #44 sll1234 280 ahcY; S-adenosylhomocysteine hydrolase. [EC:3.3.1.1] #45 slr1327 27 hypothetical protein. #46 sll1233 98 hypothetical protein. #47 sll1231 48 mtfB; Mannosyltransferase B. #48 sll1229 107 regulatory components of sensory transduction system. #49 sll1228 232 sensory transduction histidine kinase. #50 slr1329 60 atpD, atpB; ATP synthase beta chain. [EC:3.6.1.34] [SP:ATPB_SYNY3] #51 slr1330 159 atpC, atpE; ATP synthase epsilon chain. [EC:3.6.1.34] #52 slr1332 206 fabF; beta ketoacyl-acyl carrier protein synthase. [EC:2.3.1.41] #53 sll1226 89 hoxH; hydrogenase large subunit. #54 ssl2420 51 hypothetical protein. #55 sll1224 45 hoxY; hydrogenase small subunit. #56 sll1223 26 hoxU; hydrogenase subunit. [EC:1.12.1.2] #57 sll1222 40 hypothetical protein. #58 sll1221 76 hoxF; hydrogenase subunit. #59 sll1220 300 potential NAD-reducing hydrogenase subunit. [EC:1.6.5.3] #60 slr1269 96 ggt; gamma-glutamyltranspeptidase precursor. [EC:2.3.2.2] #61 slr1270 197 hypothetical protein. #62 slr1271 251 rffM; UDP-N-acetyl-D-mannosaminuronic acid transferase. [EC:2.4.1.-] #63 slr1272 29 hypothetical protein. #64 slr1273 184 hypothetical protein. #65 slr1274 81 pilM; membrane protein. #66 slr1275 39 hypothetical protein. #67 slr1276 80 hypothetical protein. #68 sll1173 66 hypothetical protein. #69 slr1278 49 hypothetical protein. #70 sll1172 282 thrC; threonine synthase. [EC:4.2.99.2] #71 slr1279 71 ndhC; NADH-plastoquinone oxidoreductase chain 3. [EC:1.6.5.3] #72 slr1281 300 ndhJ; NADH-plastoquinone oxidoreductase subunit J (orf 155). #73 slr1165 42 met3; sulfate adenylyltransferase. [EC:2.7.7.4] #74 slr1166 49 hypothetical protein. #75 ssl2138 246 hypothetical protein. #76 sll1091 300 chlP; geranylgeranyl hydrogenase. [SP:CHLP_SYNY3] #77 slr0649 145 metS; methionyl-tRNA synthetase (methionine--tRNA ligase) (metRS). #78 slr0650 60 hypothetical protein. #79 sll0398 21 dgt; dGTP triphosphohydrolase. [EC:3.1.5.1] #80 sll0396 216 regulatory components of sensory transduction system. #81 sll0395 116 hypothetical protein. #82 sll0394 134 hypothetical protein. #83 slr0415 53 napA; K(+)/H(+) antiporter. #84 slr0416 300 hypothetical protein. Motif number 1 ATTAGGATTCGCCAATCGCCGTAAAATGTT 2 18 1 GCCAATCGCC 0.858765 -81 GGCTAAACCGCCCGATCTCCCAAGTTTGGT 5 148 0 CCCGATCTCC 0.820158 -51 ATTGAGCCATGGCGATCGCCTTTTCCTCGC 9 13 1 GGCGATCGCC 0.499998 -39 CGACCAGGATGGCGATCTCCAACGAGAATT 13 18 0 GGCGATCTCC 0.539474 -66 TAAATATCTTTACGATCGCCATTGGCTAGC 23 188 0 TACGATCGCC 0.725823 -79 TGTGGTTAAGCCCGATCGCCAAGGGATTAG 25 80 0 CCCGATCGCC 0.945714 -78 GGGGGGAAGAGTCGATCGCCGTTAGGATTG 28 143 1 GTCGATCGCC 0.544708 -20 AATCTTGGCTGGCGATCGCCATTTACTTAG 39 63 1 GGCGATCGCC 0.499998 -95 TCATCGAGATGGCGATCGCCACATTAACTT 43 261 1 GGCGATCGCC 0.499998 -40 TGGACAAAGGGGCGATCGCCATTCCAGACC 44 207 1 GGCGATCGCC 0.499998 -74 AATTCCCGCAGGCGATCGCC 48 98 1 GGCGATCGCC 0.499998 -10 TAGGAGGATAGGCGATCGCCGGGGGGAGGT 49 134 1 GGCGATCGCC 0.499998 -99 CGGAGGTGTGGGCGATCGCCTGCCAATCAA 62 97 1 GGCGATCGCC 0.499998 -155 CGGACTTGTGGGCGATCGCCTGGGGGCATT 70 99 1 GGCGATCGCC 0.499998 -184 TCCCGGTCGCCCACGGCAAAA 72 290 0 CCCGGTCGCC 0.854632 -11 CCGTCCCAGCGGCGATCGCCTACCCCTAAG 76 65 1 GGCGATCGCC 0.499998 -236 ATATTTGCTATGCGATCGCCTAGTTTGCC 80 198 1 TGCGATCGCC 0.543681 -19 CGTTCCGGCTCCCGATCGCCATTTCTCTTC 82 65 1 CCCGATCGCC 0.945714 -70 AAAAAAACTTGGCGATCGCCATGGTGAATC 84 211 1 GGCGATCGCC 0.499998 -90 TTTTATTTGTGTTGATCGCCATTTGACTTC 84 280 0 GTTGATCGCC 0.665523 -21 ********** Masking position 6 Map Score: 72.0389 Number of sites scoring better than the average of aligned sites = 5938 Number in coding regions = 5396 Number in noncoding regions = 542 Number of orfs with sites within 600 bp upstream = 332 Fraction of orfs with sites within 600 bp upstream = 0.0533248 Motif number 2 GGCTGATGTAGGGGGAATTTCTGCCGCAATT 1 23 0 GGGGGAATTC 0.806422 -90 TCCTACCCCAGGGAGGATGGGCTGATGTAGG 1 42 0 GGGAGGATGG 0.819033 -71 CACGGGAAAAGGGGGGAAAGAAACCCTACCA 6 16 1 GGGGGGAAGA 0.765543 -84 CTAATTTCCTTGGGGGATGGGGATTTCCGCC 8 79 1 TGGGGGATGG 0.917647 -77 AAAGACGTTGGGGGGCAAATCATTCCAGATT 17 21 0 GGGGGCAATC 0.789613 -144 TGGGGCAGTATGGGGCAACTCAGGCTAAACT 21 61 1 TGGGGCAATC 0.499029 -51 CCCTAAATTTGGGGGTCAGGGGGGCTTTTAA 24 133 0 GGGGGTCAGG 0.912461 -168 CCCAAATTTAGGGGGAAACTGACTGAAAGTC 24 151 1 GGGGGAAATG 0.942196 -150 TCCATCCCTGGGGGGTAATGCGCC 28 4 0 GGGGGTAAGC 0.921277 -159 TTCTATTGTGGGGGGGAAGAGTCGATCGCCG 28 133 1 GGGGGGAAAG 0.742023 -30 AGATAGACCAGGGGGAATGGGCAACACAGGG 29 93 0 GGGGGAATGG 0.97403 -145 CCCTTTCTAAGGGGGGCTAGGGGGGATTAAA 36 56 0 GGGGGGCTGG 0.95358 -199 CCCTTAGAAAGGGGGGAACTCTTACAAAAGA 36 74 1 GGGGGGAATC 0.909283 -181 AGGGGTTAGCTGGGGTAATGGCGGTAGGCAA 37 30 1 TGGGGTAAGG 0.849715 -271 AGGGGGAGACAAGGCTCTTAACTT 39 4 1 GGGAGACAGG 0.809602 -154 CCCCTAGGCTTGGGGCCAGGGGACTTTTCAA 44 82 0 TGGGGCCAGG 0.814405 -199 CCCCAAGCCTAGGGGGATAGGTTTAAAGTTC 44 98 1 AGGGGGATGG 0.917647 -183 GTCAAATCCTAGGAGGATAGGCGATCGCCGG 49 125 1 AGGAGGATGG 0.545705 -108 GAAATAGTTAGGGGGAATAGCAGTGGTTTTC 50 15 0 GGGGGAATGC 0.953711 -46 GTTAATAACCTGGGGTCTAGGTTAGGAAATA 50 40 0 TGGGGTCTGG 0.562761 -21 CAGTGGCCCATGGGGACTAGGA 51 2 0 TGGGGACTGG 0.82966 -158 AATCGCAAAAAGGGGAAACGCTGTTCGCTAA 60 39 1 AGGGGAAAGC 0.921592 -58 GGTTACGGCTGGGGGAAATTGGGTTACATTT 62 153 0 GGGGGAAATG 0.942196 -99 GTTAATAATCGGGGGAAATTGTGGATAAAGG 62 182 0 GGGGGAAATG 0.942196 -70 GGCGATCGCCTGGGGGCATTCTGCCAATTTT 70 109 1 TGGGGGCATC 0.565532 -174 GGGGGGCAATGGCCCGAGGTTC 70 271 0 GGGGGCAAGG 0.971256 -12 AAGACAATAGGGGGGGCAGGCAAGGCAAGGA 71 23 1 GGGGGGCAGC 0.960405 -49 TTGGCAACAGTGGGGGAAGGGGGAGCTAAAA 72 242 1 TGGGGGAAGG 0.959921 -59 AAAGAAATTTAGGAGAAAGGCTTTGGTATTA 76 145 1 AGGAGAAAGC 0.558904 -156 ACAGAGGGGAATTGCTCCACCACAG 76 286 0 AGGGGAATGC 0.845402 -15 AATTTTTTCAAGGGGAAAAGGCGGGAAAGTT 77 55 1 AGGGGAAAGG 0.955349 -91 AAAACCGGCTAGGGGAAAGGGAAGAGAAATG 82 84 0 AGGGGAAAGG 0.955349 -51 GGGGATAAAGGGGGAAAGGGGCGCAATGGC 82 115 0 GGGGGAAAGG 0.987747 -20 GTTAGTTTATGGGAGAAAAGCA 83 2 0 GGGAGAAAGC 0.826811 -52 CTCAACGTTAAGGGGAAACCGCCTGAAATTT 84 93 1 AGGGGAAACG 0.502679 -208 ******** ** Masking position 5 Map Score: 47.9387 Number of sites scoring better than the average of aligned sites = 2931 Number in coding regions = 2538 Number in noncoding regions = 393 Number of orfs with sites within 600 bp upstream = 285 Fraction of orfs with sites within 600 bp upstream = 0.0457758 Motif number 3 TAAACCAGGCCCGACGGAAAAACCAGCGGGCCTT 15 39 1 CCAGGAAAAC 0.561036 -44 GGAAAGGAGCCCTCCGGCAAACGTGATATAGTAA 17 81 1 CCCGGCAACT 0.977111 -84 CTAAATAAAAGCTCCGACAATATTAAAGGGCTTT 19 22 0 GCCGACAAAT 0.824835 -150 CCATGGCTAGCCAATGGCGATCGTAAAGATATTT 23 183 1 CCAGGCGACT 0.808856 -84 CTTGTGCGGCCCTCCGGCAACATTGACCCCGTTG 24 54 1 CCCGGCAAAT 0.972824 -247 CCTCACTAAAGCTCCGGCAATACTAGAGGACTTT 24 176 0 GCCGGCAAAT 0.954996 -125 TCGGGCTTAACCACAGACAATCCTAACGCAAGCA 25 95 1 CCCGACAACT 0.904516 -63 AGGCGTTGATCCCCTGGCCAGAATTTTGATTCAC 28 96 1 CCCGGCCAAT 0.926864 -67 CCTCACTAAAGCTCCGGCAATACTGGGGGTCTTT 36 100 0 GCCGGCAAAT 0.954996 -155 TGACCGGGTCGCACCGGACAGATCAACTTCACCA 40 64 0 GCCGGACAAC 0.48926 -74 TCCTACCAAAGCTCTGGCAACCCTGCAGAACTTT 44 122 0 GCCGGCAACT 0.961985 -159 CCACCAATTCCCGCAGGCGATCGCC 48 93 1 CCCGGCGACC 0.944185 -15 CCAAAACCTCCCCCCGGCGATCGCCTATCCTCCT 49 135 0 CCCGGCGACC 0.944189 -98 TCGCAATTGCCCGCAGACAATCTTCCCGTTCCAA 49 177 0 CCCGACAACT 0.904516 -56 GGTTACTAGTGCCAAGGCAAAAGCCTCCCCAATG 51 55 1 GCAGGCAAAC 0.869299 -105 ATGGTGCTGACCAACGACAACCGTCCCGA 51 141 1 CCAGACAACT 0.72621 -19 TCAATTTTTCCCACGGGAAACATCAAGATTTAAT 68 37 1 CCCGGAAAAC 0.820292 -30 CGCTGGACCCCCCCTGACCACCATTAGCCGTGAG 70 26 0 CCCGACCACT 0.770311 -257 GGCAGAATGCCCCCAGGCGATCGCCCACAAGTCC 70 100 0 CCCGGCGACC 0.944189 -183 TAGAATGGAACCTCGGGCCATTGCCCCCC 70 264 1 CCCGGCCATC 0.548052 -19 TGCCAATAATCCCAAGACAAGCTCCTGAAAAGCA 72 88 1 CCAGACAACC 0.748056 -213 AGTTTTCAGTCCATTGGCAACAGTGGGGGAAGGG 72 229 1 CCTGGCAAAT 0.612416 -72 TCCCGGTCGCCCACGGCAAAATTAAACATCAAA 72 278 0 CCAGGCAAAT 0.909283 -23 TGAGGAAGAAGCCATGGCAACAGCCAATGAATTT 80 60 0 GCAGGCAAAC 0.869289 -157 CAAAAACATGGCCCAGAAAAAATTTCCCCTGAGG 80 89 0 GCCGAAAAAT 0.349128 -128 GGAAAGGGGCGCAATGGCAAAACCGGCTAGGGGA 82 99 0 GCAGGCAAAC 0.869298 -36 ACCCACGGAAGCTCGGGCAATACTAGGTAAATTT 84 118 0 GCCGGCAAAT 0.954996 -183 ** * ***** * * Masking position 10 Map Score: 35.4609 Number of sites scoring better than the average of aligned sites = 1496 Number in coding regions = 1358 Number in noncoding regions = 138 Number of orfs with sites within 600 bp upstream = 136 Fraction of orfs with sites within 600 bp upstream = 0.0218439 Motif number 4 TTAGGTTATCCTACCCCAGGGAGGATGGGCT 1 50 0 CTCCCCAGGG 0.975846 -63 TAAAGGGAGACTACCCAAGCTGTCTTCACCC 8 41 1 CTCCCAAGCT 0.78585 -115 GAAAGTCCGGCTCCCCCAGCTTAATTTTGTT 19 126 1 CTCCCCAGCT 0.886871 -46 AAAAAGTACACTGCCTCAGGATGAGAGGGTA 21 23 1 CTCCTCAGGA 0.662693 -89 TTGCCCCATACTGCCCCAGGCTAAATACCCT 21 48 0 CTCCCCAGGC 0.989318 -64 TTTACTCGCTCTCCCCTAGGGTACTCTGGCT 23 108 1 CTCCCTAGGG 0.870527 -159 TGTATTTTAGCTTCCCATGGCTAGCCAATGG 23 169 1 CTCCCATGGC 0.910753 -98 TTTTAGGCATCTTCCCCAGGATTGAGTCCGG 26 32 0 CTCCCCAGGA 0.902349 -79 CTCAATCAACCTCCCCAATCCTAACAAGCCT 26 68 1 CTCCCAATCC 0.905535 -43 CCCAAACAGTCAACCCCAGGCAGAGTGCCCA 29 26 1 CACCCCAGGC 0.935003 -212 GAAGGTCTACCTGCCTAAGCCAACCATGGGA 31 25 0 CTCCTAAGCC 0.886617 -135 ATCCTAAACCCTTCCCAATCCCATCTTTGCC 32 106 1 CTCCCAATCC 0.905535 -22 AAATTTTGAACTCCCTAAGCCTCACTATCAG 37 88 0 CTCCTAAGCC 0.886617 -213 CTCAACTTTTCTTCCCCCTCCACCAATTCCC 48 74 1 CTCCCCCTCC 0.799853 -34 GCTCCAAAACCTCCCCCCGGCGATCGCCTAT 49 141 0 CTCCCCCGGC 0.947571 -92 AGGCAAAAGCCTCCCCAATGCTAACAGTGCT 51 69 1 CTCCCAATGC 0.918694 -91 GTAACCCAATTTCCCCCAGCCGTAACCTTTA 62 157 1 TTCCCCAGCC 0.731208 -95 AGCGGTGTTGCACCCCAAGGGATTACACCTG 70 56 1 CACCCAAGGG 0.746028 -227 TAAGGCTTACCTCCCTTAGCGTTCTTGCCAC 72 131 1 CTCCTTAGCG 0.548076 -170 TTAGTTTTAGCTCCCCCTTCCCCCACTGTTG 72 246 0 CTCCCCTTCC 0.828191 -55 GCCATGGCTTCTTCCTCAGGGGAAATTTTTT 80 76 1 CTCCTCAGGG 0.895721 -141 GTTTTGAGACCTTCCCCTTGGCTTAACCCAG 80 135 1 CTCCCCTTGG 0.712529 -82 CAAATATGTTCATCCTAAGGCCCCATTGCGG 80 174 0 CACCTAAGGC 0.588763 -43 CGCCATTTCTCTTCCCTTTCCCCTAGCCGGT 82 81 1 CTCCCTTTCC 0.445133 -54 ** ******** Masking position 5 Map Score: 23.1266 Number of sites scoring better than the average of aligned sites = 1226 Number in coding regions = 1114 Number in noncoding regions = 112 Number of orfs with sites within 600 bp upstream = 136 Fraction of orfs with sites within 600 bp upstream = 0.0218439 Motif number 5 AGATAGTTGAAATTTTGCTGAATTGGTTGG 5 42 1 AATTTTGCTG 0.883224 -157 GCAGGACCCTAATTTTTCTCCCAATATGAG 5 71 1 AATTTTTCTC 0.685074 -128 TTCCGCCCTTAATTTTGCCGAAATTATGCT 8 103 1 AATTTTGCCG 0.918711 -53 GGTTGTCGATAACTTTCCCTTTTCGTGATG 17 52 1 AACTTTCCCT 0.668838 -113 GGGAAACTAAAACTTTGCCGACAGGCCCTC 19 71 1 AACTTTGCCG 0.944097 -101 TGTTATTGGGAATTTTCCCCTTTTCT 19 156 1 AATTTTCCCC 0.683082 -16 TGCTGGAATCAACTTTTCCAGGCTTGTTAG 26 88 0 AACTTTTCCA 0.752836 -23 TTTAAAGTTAAATTTTGCCATTAAGCTTGA 35 136 1 AATTTTGCCA 0.783063 -60 GAAACAAAACAATTTTTCTATTAAGTTTTA 35 166 0 AATTTTTCTA 0.577007 -30 TTTTCCTGAAAACTTTGCCAGAAAAAGAAA 38 71 0 AACTTTGCCA 0.843599 -36 CTGAGAAAGAAATTTTTCCTGAAAACTTTG 38 84 0 AATTTTTCCT 0.670876 -23 CAAGGCTCTTAACTTTTCTTCACGATTTTA 39 20 1 AACTTTTCTT 0.670876 -138 TTCAACTTTTCTCCGAGAGGCGA 44 4 1 AACTTTTCTC 0.764739 -277 TCTGATCCTAAATTTTCCTACCAAAGCTCT 44 141 0 AATTTTCCTA 0.47493 -140 AATTCCTAAGAACTTTGCTTGAATGTGATA 44 254 0 AACTTTGCTT 0.783063 -27 CAATTAATTTTGCTCACTGTTGATC 47 34 0 AATTTTGCTC 0.793908 -15 ACTTTTACTCAACTTTTCTTCCCCCTCCAC 48 67 1 AACTTTTCTT 0.670876 -41 CAATTGCGAGAACTTTGCTGGAAAAGGACT 49 202 1 AACTTTGCTG 0.918711 -31 CCACTCAGTTAACTTTTCTGAAACACC 57 24 1 AACTTTTCTG 0.864539 -17 AGGGTAATTTTGCTGGTAGATTATC 67 66 0 AATTTTGCTG 0.883224 -15 CTAAATTTTCAATTTTTCCCACGGGAAACA 68 29 1 AATTTTTCCC 0.764739 -38 GCATTCTGCCAATTTTTCTGATTATAGGAC 70 124 1 AATTTTTCTG 0.810285 -159 TTTGATGTTTAATTTTGCCGTGGGCGACCG 72 278 1 AATTTTGCCG 0.918711 -23 GCTCTATTGCAACTTTGCCGTCCCAGCGGC 76 48 1 AACTTTGCCG 0.944097 -253 ACATTTTTATAACTTTCCCGCCTTTTCCCC 77 66 0 AACTTTCCCG 0.863456 -80 ********** Masking position 5 Map Score: 23.7773 Number of sites scoring better than the average of aligned sites = 888 Number in coding regions = 742 Number in noncoding regions = 146 Number of orfs with sites within 600 bp upstream = 153 Fraction of orfs with sites within 600 bp upstream = 0.0245744 Motif number 6 TCAAGTTATCGCCTAACATTTTACGGCGATTGGC 2 28 0 GCCAATTTAC 0.455823 -71 CGCATTTACTGTCAGACCTTTAGCTAAGCTTTTA 16 132 1 GTCGATTTGC 0.854993 -64 CTTTAATATTGTCGGAGCTTTTATTTAGTGCCAA 19 28 1 GTCGATTTAT 0.573031 -144 AGCTGGGGGAGCCGGACTTTCTGCAATCCAATGC 19 113 0 GCCGATTCGC 0.956195 -59 AAATGGCAAAGTCAGCATTTTCGCTTGTAAACCC 23 44 0 GTCGCTTTGC 0.667376 -223 CGGATTTTCGGCCTGCAATTTACTCGCTCTCCCC 23 90 1 GCCGCTTTCT 0.814711 -177 GGGTTATCCGGCCTGTATTTTAGCTTCCCATGGC 23 156 1 GCCGTTTTGC 0.801197 -111 CTCTAGTATTGCCGGAGCTTTAGTGAGGAGATTT 24 182 1 GCCGATTTGT 0.980165 -119 TGATCCCCTGGCCAGAATTTTGATTCACTGTTTC 28 102 1 GCCGATTTAT 0.914536 -61 CCCCAGTATTGCCGGAGCTTTAGTGAGGAGATTT 36 106 1 GCCGATTTGT 0.980165 -149 CTGCAGGGTTGCCAGAGCTTTGGTAGGAAAATTT 44 128 1 GCCGATTTGT 0.979565 -153 GCGAAAGTTAGCCTGATTTTCACCCTTAGTCGGG 59 203 0 GCCGATTCCC 0.854826 -98 TCCCAGAATTGCCGGAGTTTAAGTGACAAGGATA 61 93 1 GCCGATTAGT 0.818987 -105 ACATTTCGGTGCCCGCTCTTTTGTAGAATGGAAC 70 241 1 GCCGCTTTGT 0.943827 -42 GGGGGCAATGGCCCGAGGTTCCATTCTACAAAAG 70 258 0 GCCGATTCAT 0.836514 -25 CCAGGCTTAGCATGAAGTTTTGTAACGGTTTTG 76 10 1 GCAGATTTGT 0.685691 -291 TTCTTCCGCCGCCGAAATTTTAGTAAAAGCCGGA 76 208 1 GCCAATTTGT 0.802636 -93 AGGGGAAACCGCCTGAAATTTACCTAGTATTGCC 84 103 1 GCCGATTTCC 0.924956 -198 ACCTAGTATTGCCCGAGCTTCCGTGGGTCGTTTT 84 124 1 GCCGATTCGT 0.959369 -177 *** ** *** ** Masking position 9 Map Score: 18.2865 Number of sites scoring better than the average of aligned sites = 334 Number in coding regions = 267 Number in noncoding regions = 67 Number of orfs with sites within 600 bp upstream = 60 Fraction of orfs with sites within 600 bp upstream = 0.00963701 Motif number 7 AGGGAAATTATGGCAAGGAA 5 189 1 TGGCAAGGAA 0.829622 -10 GGGCAGGCTAGGCTAGGACAAAAA 7 5 1 AGGCTAGGCT 0.487442 -139 TTAGTACGGTTGGCAAGGCTTAAAAGAAGC 8 130 0 TGGCAAGGCT 0.753722 -26 ACTAAAAGGCAAAGGAATAAAACT 10 7 1 AGGCAAAGGA 0.715947 -18 TAGACAAATTTGGCAAGGCAG 23 256 1 TGGCAAGGCA 0.944066 -11 ATTGCAATGGAGGCAATGAATAGCA 25 6 0 AGGCAATGAA 0.695734 -152 AGGCAATGCAGTTTCAGCCA 27 1 1 AGGCAATGCA 0.888329 -35 GGAGCATATCAGTCAAGGCAAATTATCCGG 29 195 1 AGTCAAGGCA 0.704557 -43 TGGGTAACAGTGGCTAAGCACCGTACAAAT 32 62 1 TGGCTAAGCA 0.606418 -66 AAACCAGCTTTGGCTATGGAAAAGTCTCTG 35 57 0 TGGCTATGGA 0.79438 -139 TAGCGCAGGTAGGCAAAGCTCTAATCTGAT 44 165 0 AGGCAAAGCT 0.338306 -116 GCTAACCGTCTGTCAATGGACAAAGGGGCG 44 191 1 TGTCAATGGA 0.635703 -90 GCTGATTGTCTAGGAATTTGTTTATA 49 7 1 TGTCTAGGAA 0.271954 -226 CGGTTACTAGTGCCAAGGCAAAAGCCTCCC 51 54 1 TGCCAAGGCA 0.774829 -106 GAGAACTCAATGTCAATGGAAGGTACCGAA 52 68 1 TGTCAATGGA 0.635703 -139 AAAAAACATAAGGCTATGGAAACCCGACAG 52 140 0 AGGCTATGGA 0.745018 -67 CAAAGTTCGGTGGCTAGGGATCA 66 27 1 TGGCTAGGGA 0.861428 -13 TAGGGGGGGCAGGCAAGGCAAGGACAATGG 71 30 1 AGGCAAGGCA 0.927564 -42 TTGGGATTATTGGCAATGGAGGCCAATACT 72 73 0 TGGCAATGGA 0.903603 -228 CCCCCACTGTTGCCAATGGACTGAAAACTT 72 228 0 TGCCAATGGA 0.678173 -73 CCATGGCAACAGCCAATGAATTTGAATGGG 80 53 0 AGCCAATGAA 0.339516 -164 ********** Masking position 6 Map Score: 13.559 Number of sites scoring better than the average of aligned sites = 577 Number in coding regions = 507 Number in noncoding regions = 70 Number of orfs with sites within 600 bp upstream = 90 Fraction of orfs with sites within 600 bp upstream = 0.0144555 Motif number 8 GGCTGATGTCTAAACAAATACGCTCTCTAGCTTAAC 13 58 0 CTCAAAATCT 0.975603 -26 ATAAAGGCTATTGGGCAAACAAGACCTTCAACAAAGC 22 88 0 TTCAAAACCT 0.787922 -81 ACCTACAAACTTCAACAAAAAACACCT 23 1 0 TTCAAAACCT 0.787922 -266 CAGAATAAAACTTTCCAAACACCTTCTCAGGGGATTC 24 222 1 CTCAAAATCT 0.975603 -79 CAAAACTCAACTTTTTAAAAAGGCTCTTAAGCTTGAA 36 15 0 CTTAAAATCT 0.724814 -240 CAGAATAAAACTTTTCAAATAAGTTCTAACGCTAGTA 36 146 1 CTCAAAATCT 0.975603 -109 AACTTTTCAAACACTTTCTAAGAGGAGTG 41 3 1 CTCAAAATCT 0.975603 -91 CTTCACCCTACTTTTCAAACACGCTCTAAGAGCTTAG 42 67 0 CTCAAAATCT 0.975603 -68 GGCCAGGGGACTTTTCAAGCAACTCCTTGGGGCACTA 44 63 0 CTCAAGACCT 0.822424 -218 TCTATATTTACTGCTCAAAAAATATCTAAATCAACAA 53 52 1 CTCAAAATCT 0.975603 -38 TCGCCTACCCCTAAGCAAAAAGACCGTGATAGGATGC 76 80 1 CTCAAAACGT 0.757441 -221 GAGGAGGGGACTTTTCAAACAAACTTTAGAGTGAAAA 84 59 0 CTCAAAATTT 0.741555 -242 CAGAATAAAACTCTGCAAACAAATTCTGAAAAATTAT 84 164 1 CTCAAAATCT 0.975603 -137 ** **** * *** Masking position 8 Map Score: 11.1103 Number of sites scoring better than the average of aligned sites = 134 Number in coding regions = 41 Number in noncoding regions = 93 Number of orfs with sites within 600 bp upstream = 72 Fraction of orfs with sites within 600 bp upstream = 0.0115644 Motif number 9 ATACGCACGGGAAAAGGGGGGAAAGAA 6 5 1 GCGGAAAAGG 0.911299 -95 ATTTTAGGGAGGTTAGGAAAAGACTTGACCAAT 6 46 1 GGGGAAAAGA 0.806416 -54 GGGCAGGCTAGGCTAGGACAAAAAGGAAGGTGG 7 11 1 GGGGACAAAA 0.626229 -133 TCATCTCCCTGGAACGGACAGAGCAACCAACAA 7 52 1 GGGGACAGAG 0.853927 -92 AATCCTTTGGGGATTGGCCATGGGACTATGGCA 7 113 0 GGGGCCATGG 0.819732 -31 ACTGGAGTTGGGCGAGGAAAAGGCGATCGCCAT 9 21 0 GGGGAAAAGG 0.960881 -31 CTATTCGATAGGTTGGGACAGGGAGGGTTAAAA 16 161 0 GGGGACAGGG 0.952239 -35 CCCTGGTACGGGAACGGAAAGGGCTAAAATTTG 22 15 0 GGGGAAAGGG 0.935629 -154 GGGTACTCTGGCTTTGGGAAAGGGTAAATGGGG 23 126 1 GCGGGAAAGG 0.893869 -141 GGCAAAGATGGGATTGGGAAGGGTTTAGGATAA 32 104 0 GGGGGAAGGG 0.922574 -24 AACGCTGCCTGGGCAGGACAAAGGGCAAAAACA 34 48 0 GGGGACAAAG 0.90808 -27 AGGGGGAGACAAGGCTCTTAACTT 39 2 1 GGAGACAAGG 0.538436 -156 AACTGCTCGTGCCACGGAAATTGATTATCCCGT 43 220 1 GCGGAAATTG 0.484709 -81 GGGAATTGGTGGAGGGGGAAGAAAAGTTGAGTA 48 72 0 GGGGGAAGAA 0.372063 -36 CTGGGGTCTAGGTTAGGAAATAGTTAGGGGGAA 50 29 0 GGGGAAATAG 0.727703 -32 GGTTACTAGTGCCAAGGCAAAAGCCTCCCCAAT 51 55 1 GCGGCAAAAG 0.522819 -105 AACCAAGCTGGGTTGGGCCATGGTGCTGACCAA 51 122 1 GGGGCCATGG 0.819732 -38 TCTGGACAATGCGGAGGGAAATGATTAAGGCAC 61 36 0 GCGGGAAATG 0.675127 -162 AATGACCAACGGACTGGAAAATAAGCCGCAAAA 62 32 1 GGGGAAAATA 0.506869 -220 GTGGAGTATGGCATCGGACAAGGAGAGGAGTGA 65 23 1 GCGGACAAGG 0.933743 -59 TGAAGCAATAGGTGTGGGCAAGGTGAACAAACC 65 53 1 GGGGGCAAGG 0.96506 -29 GGGCAGGCAAGGCAAGGACAATGGATTGGTGGC 71 36 1 GGGGACAATG 0.892628 -36 GGCAAAACCGGCTAGGGGAAAGGGAAGAGAAAT 82 85 0 GCGGGAAAGG 0.893869 -50 AGGAGCAATCGGAGAGGGCATTAGGGCTGTGGA 84 23 0 GGGGGCATTA 0.300156 -278 ** ******** Masking position 10 Map Score: 22.6812 Number of sites scoring better than the average of aligned sites = 1579 Number in coding regions = 1423 Number in noncoding regions = 156 Number of orfs with sites within 600 bp upstream = 163 Fraction of orfs with sites within 600 bp upstream = 0.0261805 Motif number 10 CAAAGCGCCACCAAACTTGGGAGATCGGGCGG 5 139 1 CCAACTTGGA 0.549836 -60 GTTGAGCAAATCCTTTGGGGATTGGCCA 7 126 0 CAAACCTTGG 0.935301 -18 ATTTGCCCCCCAACGTCTTTGGTTGTCGATAA 17 32 1 CAACTCTTGG 0.623717 -133 CCCCTGACCCCCAAATTTAGGGGGAAACTGAC 24 142 1 CCAATTTGGG 0.752127 -159 AAAACCGGACTCAATCCTGGGGAAGATGCCTA 26 28 1 TCAACCTGGG 0.831566 -83 CTGTACCATTCCATCCCTGGGGGGTAATGCGC 28 12 0 CCATCCTGGG 0.953572 -151 GCATCGGAGCCAAATTCTAGGGGCCATACCAA 32 17 1 CAAATCTGGG 0.920212 -111 TTAGGGAGTTCAAAATTTCTGGAGTTTTCTCA 37 101 1 CAAATTTTGG 0.408856 -200 CACCAAACCGCAAAACCTGTGACTTCGTGTGC 40 37 0 CAAACCTTGA 0.63047 -101 ACTTTTCAAGCAACTCCTTGGGGCACTATTTG 44 59 0 CAACCCTGGG 0.938955 -222 TCCCCTGGCCCCAAGCCTAGGGGGATAGGTTT 44 90 1 CCAACCTGGG 0.984478 -191 AATTTTCCTACCAAAGCTCTGGCAACCCTGCA 44 129 0 CCAAGCTTGG 0.648153 -152 TGAGATGGGTCAAATCCTAGGAGGATAGGCGA 49 117 1 CAAACCTGGA 0.822762 -116 CATTGGTTACAATTCTTAGGGCAATGCGGTA 60 76 0 CAATCTTGGG 0.675139 -21 AGACTGAGTCCCATCCCTCTGGACAATGCGGA 61 54 0 CCATCCTTGG 0.883023 -144 AGGCGATCGCCCACACCTCCGGTTACGCTGAC 62 86 0 CCACCCTCGG 0.707713 -166 GACCCAGGTGTAATCCCTTGGGGTGCAACACC 70 59 0 TAATCCTGGG 0.497838 -224 AATTATTTCTCCAATTCTTGGGCATTAAAT 73 9 0 CCAATCTGGG 0.94897 -34 GTTGTGCCCGCCAATTCTAGGGACGT 74 34 1 CCAATCTGGG 0.948973 -16 TAGACAACGCCAAACCCTGTGGTGGAGCAATT 76 270 1 CAAACCTTGG 0.935303 -31 **** *** *** Masking position 8 Map Score: 14.9261 Number of sites scoring better than the average of aligned sites = 1210 Number in coding regions = 1057 Number in noncoding regions = 153 Number of orfs with sites within 600 bp upstream = 145 Fraction of orfs with sites within 600 bp upstream = 0.0232894 Motif number 11 GCAGAAATTCCCCCTACATCAGCCCATCCTCCC 1 30 1 CCCCTATCGC 0.90018 -83 GTTTTAACCCCCGCTTGACCGCCTTACCTCAAC 1 85 1 CCGCTACCCC 0.973513 -28 TGATTTATTGCCCCTCTTTCACCCCCAACTTA 2 77 1 CCCCTTTCCC 0.970419 -22 AATAGGGTATCCGCTGTATCCCTCTTC 4 5 0 CCGCTATCCT 0.690039 -296 AAAGTTCCGTCGGCTAAACCGCCCGATCTCCCA 5 156 0 CGGCTACCCC 0.872131 -43 GTTTCTTTCCCCCCTTTTCCCGTGCGTAT 6 7 0 CCCCTTCCGT 0.353621 -93 CTTTAAAAGCCCCCCTGACCCCCAAATTTAGGG 24 131 1 CCCCCACCCC 0.949721 -170 TTTATTCTGCCCCCTAAATCTCCTCACTAAAGC 24 198 0 CCCCTATCCC 0.979837 -103 AGGGATTAGTCCCTTATTTCCCCGTAAAGTTGA 25 56 0 CCCTTTTCCC 0.794726 -102 GGATTGAGTCCGGTTTTTTCTCCTTCCCATCAC 26 12 0 CGGTTTTCCC 0.308488 -99 TCTGTTTTTGCCCTTTGTCCTGCCCAGGCAGCG 34 46 1 CCCTTTCCGC 0.466699 -29 TGTTTAATCCCCCCTAGCCCCCCTTAGAAAGGG 36 54 1 CCCCTCCCCC 0.903251 -201 TTTATTCTGCCCCCTAAATCTCCTCACTAAAGC 36 122 0 CCCCTATCCC 0.979837 -133 AAAACCTCCCCCCGGCGATCGCCTATCCTCCTA 49 134 0 CCCGGATCCC 0.424295 -99 TAGAAAACCACTGCTATTCCCCCTAACTATTTC 50 13 1 CTGCTTCCCC 0.536794 -48 CAAAAAAATACCCCGGCATCACCGAGGGCATAT 52 31 1 CCCCGATCCC 0.914135 -176 GGCAGGCGATCGCCCACACCTCCGGTTACGCTG 62 88 0 CGCCCACCCC 0.778038 -164 GGGTGCAACACCGCTGGACCCCCCCTGACCACC 70 38 0 CCGCTACCCC 0.973513 -245 GGAGGAGGCCCCGCTGGTTCTTCCGCCGCCGAA 76 191 1 CCGCTTTCTC 0.48755 -110 TATAACTTTCCCGCCTTTTCCCCTTGAAAAAAT 77 56 0 CCGCCTTCCC 0.86667 -90 CGCCCCTTTCCCCCTTTATCCCC 82 122 1 CCCCTATCCC 0.979837 -13 ***** *** ** Masking position 10 Map Score: 19.9963 Number of sites scoring better than the average of aligned sites = 1288 Number in coding regions = 1029 Number in noncoding regions = 259 Number of orfs with sites within 600 bp upstream = 154 Fraction of orfs with sites within 600 bp upstream = 0.024735 Motif number 12 TTCATTGAATAGTTTTATTTACATATT 3 24 1 AGTTTTATTT 0.677263 -17 ATAGCGCAATAGTTTTTGCTTATACTGTGT 4 240 1 AGTTTTTGCT 0.587905 -61 AGTTTTATTCCTTTGCCTTT 10 15 0 AGTTTTATTC 0.793219 -10 CTAATAAAATAGTTTTGTTT 11 31 1 AGTTTTGTTT 0.708531 -10 AGCTTCAGGAAGTTTTTGTCCCCTGGGCTG 18 56 1 AGTTTTTGTC 0.760489 -45 TTTAGTGCCAAGTTTTGGCCGGGAAACTAA 19 51 1 AGTTTTGGCC 0.86965 -121 CTGTCGGCAAAGTTTTAGTTTCCCGGCCAA 19 65 0 AGTTTTAGTT 0.793219 -107 GTGTTTGGAAAGTTTTATTCTGCCCCCTAA 24 214 0 AGTTTTATTC 0.793219 -87 TAAAAAGTTGAGTTTTGGCTGTTTAATCCC 36 35 1 AGTTTTGGCT 0.784933 -220 TTATTTGAAAAGTTTTATTCTGCCCCCTAA 36 138 0 AGTTTTATTC 0.793219 -117 ATTACTGTTGAGTTTTGGTCAAATTTGCCA 49 50 1 AGTTTTGGTC 0.890387 -183 CATCAAAATTAGTTTTAGCTCCCCCTTCCC 72 255 0 AGTTTTAGCT 0.759073 -46 TAGAGAGGTGAGTTTTGGCTCACCTTTTTA 75 50 1 AGTTTTGGCT 0.784933 -197 TTGTTTGCAGAGTTTTATTCTGTCCTCTAA 84 156 0 AGTTTTATTC 0.793219 -145 GCGATCGCCAAGTTTTTTTCCCATAAGAGA 84 200 0 AGTTTTTTTC 0.634633 -101 ********** Masking position 1 Map Score: 9.67489 Number of sites scoring better than the average of aligned sites = 291 Number in coding regions = 217 Number in noncoding regions = 74 Number of orfs with sites within 600 bp upstream = 74 Fraction of orfs with sites within 600 bp upstream = 0.0118856 Motif number 13 AATTGGTTGGCAGGACCCTAATTTTTCTCCC 5 62 1 CAGACCCTAA 0.758387 -137 GAGGGCAACGCTGGCCCCTAC 6 89 1 CTGCCCCTAC 0.982051 -11 CCCAAGCTGTCTTCACCCAAACGGGCTAATT 8 54 1 CTTACCCAAA 0.516706 -102 AAAAGCCCCCCTGACCCCCAAATTTAGGGGG 24 135 1 CTGCCCCCAA 0.898938 -166 AAGTTTTATTCTGCCCCCTAAATCTCCTCAC 24 204 0 CTGCCCCTAA 0.979267 -97 AAGTTTTATTCTGCCCCCTAAATCTCCTCAC 36 128 0 CTGCCCCTAA 0.979267 -127 ATTACCCCAGCTAACCCCTACTTCGGAATAT 37 18 0 CTACCCCTAC 0.811717 -283 ATTTTCCATTCTTCACCCTACTTTTCAAACA 42 83 0 CTTACCCTAC 0.794139 -52 GAAAAGTCCCCTGGCCCCAAGCCTAGGGGGA 44 84 1 CTGCCCCAAG 0.881123 -197 CACTTTGGGGCTGTCCCCAACTGGTGAGATG 49 93 1 CTGCCCCAAC 0.946138 -140 CAGTGTGCGCCAGAACCCTACCATTGACTGA 64 85 0 CAGACCCTAC 0.784299 -100 CCCGGTGAAGCTGTACCCTAAACCTTGGTAA 81 14 1 CTGACCCTAA 0.943589 -103 TTTCTCTTCCCTTTCCCCTAGCCGGTTTTGC 82 86 1 CTTCCCCTAG 0.821317 -49 GAGTTTTATTCTGTCCTCTAAAACGACCCAC 84 146 0 CTGCCTCTAA 0.741948 -155 *** ******* Masking position 10 Map Score: 12.2303 Number of sites scoring better than the average of aligned sites = 294 Number in coding regions = 223 Number in noncoding regions = 71 Number of orfs with sites within 600 bp upstream = 56 Fraction of orfs with sites within 600 bp upstream = 0.00899454 Motif number 14 TAGCGCAATAGTTTTTGCTTATACTGTGTT 4 241 1 GTTTTTGCTT 0.768238 -60 GGTTTAATCTGTTTTAGTTTTACAGCGCGA 15 15 0 GTTTTAGTTT 0.490854 -68 GCTTCAGGAAGTTTTTGTCCCCTGGGCTGA 18 57 1 GTTTTTGTCC 0.475398 -44 TTAGTGCCAAGTTTTGGCCGGGAAACTAAA 19 52 1 GTTTTGGCCG 0.70634 -120 TGTCGGCAAAGTTTTAGTTTCCCGGCCAAA 19 64 0 GTTTTAGTTT 0.490854 -108 TTTGTTTTGGCACGAAGATTAAC 20 4 1 GTTTTGGCAC 0.69363 -40 GCCCAGTTCTGTTTTAGCTTAACGTTTTTA 29 52 1 GTTTTAGCTT 0.803299 -186 GGGGCGGTTTTGGTTCCCATGGTTGG 31 7 1 GTTTTGGTTC 0.821886 -153 AAATGACTCTGTTTTTGCCCTTTGTCCTGC 34 39 1 GTTTTTGCCC 0.793334 -36 AAAAAGTTGAGTTTTGGCTGTTTAATCCCC 36 36 1 GTTTTGGCTG 0.839403 -219 ACTAGTAACCGTTTTTGCTTCCGCCCCAGT 51 35 0 GTTTTTGCTT 0.768238 -125 GGGGTTTAAGCTCAATAACAACA 58 64 0 GTTTAAGCTC 0.640756 -13 AATTTACCTGGTTTAGGCTCTCCCAATCAT 59 242 1 GTTTAGGCTC 0.772334 -59 ATCAAAATTAGTTTTAGCTCCCCCTTCCCC 72 254 0 GTTTTAGCTC 0.911324 -47 AGAGAGGTGAGTTTTGGCTCACCTTTTTAT 75 51 1 GTTTTGGCTC 0.95133 -196 ********** Masking position 4 Map Score: 6.5582 Number of sites scoring better than the average of aligned sites = 410 Number in coding regions = 330 Number in noncoding regions = 80 Number of orfs with sites within 600 bp upstream = 84 Fraction of orfs with sites within 600 bp upstream = 0.0134918 Motif number 15 ACTAGAGGACTTTCAGTCAGTTTCCCCCTAAA 24 157 0 TTTCAGCGTT 0.960064 -144 GGCAATGCAGTTTCAGCCAATTACTATCAATC 27 12 1 TTTCAGCATT 0.898295 -24 TGTTTAAACCTGTTCATTTTGTAC 31 146 0 TTTAAACGTT 0.547242 -14 TGTTCTGGGTTTTAAGCCTATTTCTAAGTAAA 39 84 0 TTTAAGCATT 0.527747 -74 AACTTTTCAAACACTTTCTAAGAGGA 41 5 1 TTTCAACCTT 0.612568 -89 TCTTAAATACTTTCAGGCTGTTTAGACTATGA 46 19 0 TTTCAGCGTT 0.960064 -80 AATAGCTATTTTGCAAACTGTTTAGAAAACTT 54 16 0 TTGCAACGTT 0.621206 -36 GCGGCTTATTTTCCAGTCCGTTGGTCATTTTG 62 29 0 TTCCAGCGTT 0.804952 -223 CCTAAATTTCAGCCAATTTATCCATAGT 69 7 1 TTTCAGCATT 0.898295 -43 GTTGACTGATTTTCAATCGGTTAAAACAACAG 72 179 0 TTTCAACGTT 0.90524 -122 CCCCCAAAGTTTTCAGTCCATTGGCAACAGTG 72 222 1 TTTCAGCATT 0.898295 -79 CCTAGGTCAATTTCAATCTTTTTAAGATTTTT 77 108 0 TTTCAACTTT 0.516155 -38 ACTAGGTAAATTTCAGGCGGTTTCCCCTTAAC 84 99 0 TTTCAGCGTT 0.960064 -202 ****** * *** Masking position 5 Map Score: 7.86574 Number of sites scoring better than the average of aligned sites = 90 Number in coding regions = 55 Number in noncoding regions = 35 Number of orfs with sites within 600 bp upstream = 37 Fraction of orfs with sites within 600 bp upstream = 0.00594282