AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00650_synecho_reg_300.orf -o00650_synecho_300.ace -a/home/amcguire/genomes/ORF_synecho.txt -z/home/amcguire/genomes/synecho.fna -g0.48 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.48 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 sll1641 157 gad; glutamate decarboxylase. [EC:4.1.1.15] #2 sll1639 146 ureD; urease accessory protein D. [SP:URED_SYNY3] #3 sll1638 300 hypothetical protein. #4 slr1233 47 frdA; succinate dehydrogenase flavoprotein subunit. [EC:1.3.99.1] #5 ssr2049 51 bchB; protochlorophillide reductase 57 kD subunit. #6 slr1234 45 hypothetical hit-like protein slr1234. [SP:YHIT_SYNY3] #7 slr1235 36 hypothetical protein. #8 slr1236 66 hypothetical protein. #9 ssl2250 221 glycoprotein 64. #10 sll1132 35 hypothetical protein. #11 sll1131 174 hypothetical protein. #12 slr1237 48 codA; cytosine deaminase. [EC:3.5.4.1] #13 ssl2245 300 hypothetical protein. #14 sll1625 293 sdhB; succinate dehydrogenase iron- sulphur protein subunit. #15 sll1623 163 phr; ABC transporter. #16 slr1736 58 phr; hypothetical protein. #17 slr1737 71 phr; hypothetical protein. #18 sll1621 300 phr; membrane protein. [SP:YG21_SYNY3] #19 sll1605 262 fabZ; (3R)-hydroxymyristol acyl carrier protein dehydrase. #20 slr1718 78 hypothetical protein. #21 slr1719 129 drgA; drgA protein. [SP:DRGA_SYNY3] #22 slr1720 25 aspS; aspartyl-tRNA synthetase (aspartate--tRNA ligase) (aspRS). #23 slr1721 102 hypothetical protein. #24 slr1722 126 guaB; IMP dehydrogenase subunit. [EC:1.1.1.205] #25 sll1601 96 hypothetical protein. #26 slr1724 167 hypothetical protein. #27 ssl3127 285 hypothetical protein. #28 sll1599 98 mntA; manganese transport system ATP-binding protein mntA. #29 sll1598 143 mntC; Mn transporter MntC. #30 ssr2898 300 transposase. #31 slr2088 213 ilvG; acetohydroxy acid synthase. [EC:4.1.3.18] #32 slr2089 89 shc; squalene-hopene-cyclase. #33 tRNA-Pro-3 300 tRNA-Pro. #34 sll1981 299 ilvB; acetolactate synthase. [EC:4.1.3.18] #35 ssl3769 300 hypothetical protein. #36 ssr1391 77 hypothetical protein. #37 slr0820 145 glucosyltransferase. #38 ssl1507 78 transposase. #39 sll0808 300 transposase. #40 slr1934 123 pyruvate dehydrogenase E1 component, alpha subunit. [EC:1.2.4.1] #41 sll1853 30 hypothetical protein. #42 sll1852 224 ndk, ndkR; nucleoside diphosphate kinase (NDK) (ndp kinase). #43 tRNA-Ala-1 21 tRNA-Ala. #44 sll1851 102 hypothetical protein. #45 sll1849 79 hypothetical protein. #46 slr1938 87 hypothetical protein. [SP:YJ38_SYNY3] #47 sll1848 284 hypothetical protein. #48 slr1939 91 hypothetical protein. #49 slr1940 97 hypothetical protein. #50 ssr3300 112 hypothetical protein. #51 sll1845 121 hypothetical protein. #52 slr1942 38 hypothetical protein. #53 ssr3304 52 hypothetical protein. #54 slr1943 235 dpm1; dolichol phosphate mannose synthase. [EC:2.4.1.83] #55 slr1944 94 hypothetical protein. #56 slr1945 64 yibO; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. #57 ssr3307 236 ycf47; hypothetical protein. #58 slr1946 160 hypothetical protein. #59 sll1841 210 odhB; dihydrolipoamide acetyltransferase component (E2) of pyruvate #60 slr1949 300 hypothetical protein. #61 slr0370 171 gabD; succinate-semialdehyde dehydrogenase (NADP+). [EC:1.2.1.16] #62 sll0337 138 sensory transduction histidine kinase. [EC:2.7.3.-] #63 sll0336 113 accD, zfpA; acetyl-coenzyme A carboxylase carboxyl transferase #64 sll0335 279 hypothetical 53.7 kD protein sll0335. [SP:Y335_SYNY3] #65 slr0373 90 hypothetical protein. #66 slr0374 132 cell division cycle protein. #67 slr0376 181 hypothetical protein. #68 slr0377 42 hypothetical protein. #69 slr0380 113 hypothetical protein. #70 slr0381 300 gloA; probable lactoylglutathione lyase (methylglyoxalase) #71 slr0776 107 lpxD; UDP-3-o-[3-hydroxymyristoyl] glucosamine n-acyltransferase. #72 sll0767 140 rplT, rpl20; 50S ribosomal protein L20. [SP:RL20_SYNY3] #73 ssl1426 96 rpmI, rpl35; 50S ribosomal protein L35. [SP:RL35_SYNY3] #74 sll0765 91 hypothetical protein. #75 tRNA-Ala-2 300 tRNA-Ala. #76 sll0065 181 ilvN; acetolactate synthase. [EC:4.1.3.18] #77 slr0053 64 hypothetical 20.1 kD protein slr0053. [SP:Y053_SYNY3] #78 slr0054 135 dgkA; probable diacylglycerol kinase (DAGK) (diglyceride kinase) #79 slr0055 143 trpG; anthranilate synthase component II. [EC:4.1.3.27] #80 slr0056 146 G4; chlorophyll synthase 33 kD subunit. #81 sll0064 300 hypothetical protein. #82 sll0823 166 sdhB; succinate dehydrogenase iron-sulfur protein. [EC:1.3.99.1] #83 sll0822 163 hypothetical protein. #84 slr0846 61 hypothetical protein. #85 sll0821 300 hypothetical protein. #86 slr0092 117 hisB; hypothetical protein. #87 slr0093 28 dnaJ-like protein slr0093. [SP:DNJH_SYNY3] #88 slr0095 161 hisB; O-methyltransferase. [EC:2.1.1.-] #89 slr0096 29 hisB; low affinity sulfate transporter. #90 slr0498 246 hisB; hypothetical protein. #91 sll0489 286 hisB; ABC transporter. #92 sll0488 116 hypothetical protein. #93 sll0487 109 hypothetical protein. #94 sll0486 173 hypothetical protein. #95 sll0485 247 hypothetical protein. #96 sll0484 130 ABC transporter. #97 slr0502 62 cobW; CobW. #98 slr0505 121 hypothetical protein. #99 slr0506 56 pcr; protochlorophyllide oxido-reductase. [EC:1.3.1.33] #100 sll0481 71 hypothetical protein. [SP:Y481_SYNY3] #101 sll0480 182 hypothetical protein. #102 slr0509 131 alkaline phosphatase-like. #103 slr0510 222 hypothetical protein. #104 ssr0871 55 transposase. #105 slr0511 300 transposase. #106 slr1556 152 ddh; 2-hydroxyaciddehydrogenase. [EC:1.1.1.-] #107 sll1498 50 carA; carbamoyl-phosphate synthetase subunit A. [EC:6.3.5.5] #108 slr1557 99 hypothetical protein. #109 sll1496 146 mannose-1-phosphate guanyltransferase. [EC:2.7.7.-] #110 sll1495 154 hypothetical protein. #111 tRNA-Val 51 tRNA-Val. #112 slr1559 126 aroE; shikimate 5-dehydrogenase. [EC:1.1.1.25] #113 slr1560 77 hiss2; probable histidyl-tRNA synthetase 2 (histidine--tRNA ligase #114 slr1562 30 probable glutaredoxin slr1562. [SP:GLR1_SYNY3] #115 slr1563 300 hypothetical protein. Motif number 1 GGATTTTAGGGGCGATCGCCTTGGGAATTT 14 119 1 GGCGATCGCC 0.499995 -175 GGTTTTCGGTGGCGATCGGGCCTAGAACCT 19 139 1 GGCGATCGGG 0.95955 -124 CAACTATTATGGCGATCGCCAGTTTGGTGG 27 186 1 GGCGATCGCC 0.499995 -100 GTCAACCCCTGGCGATCGGGGGAAATGTGT 32 35 0 GGCGATCGGG 0.95955 -55 ATGGCTAATCGGCGATCGGGGCAATCATCT 34 138 0 GGCGATCGGG 0.95955 -162 AGCTAAGTTAGGCGATCGGATTGGGGCTAG 35 238 0 GGCGATCGGA 0.898495 -63 TGAACGCAACGGCGATCGTTCATTGCGCCC 36 25 0 GGCGATCGTT 0.778341 -53 AAACCACCCTGGCGATCGCTGTTCCAGAAC 42 96 0 GGCGATCGCT 0.564431 -129 TTTTCCTTTGGGCGATCGCCTAGATGGTCG 59 74 1 GGCGATCGCC 0.499995 -137 CTGACAACCCGGCGATCGCCAAAGCGGGGT 63 25 1 GGCGATCGCC 0.499995 -89 GGATTACCCCGGCGATCGCCACTGTCCCCG 63 87 1 GGCGATCGCC 0.499995 -27 GCAAAATCTTGGCGATCGCCCTTGGCTTTA 69 52 1 GGCGATCGCC 0.499995 -62 AAAAACAATCGGCGATCGGGTACTCAGAAC 70 117 1 GGCGATCGGG 0.95955 -184 ATTTTAGGACGGCGATCGCCGGGGATAATT 80 11 1 GGCGATCGCC 0.499995 -136 TTAATTGTTAGGCGATCGGG 84 1 0 GGCGATCGGG 0.95955 -61 GATGATCCTTGGCGATCGCCAGTTTGGGAA 90 110 1 GGCGATCGCC 0.499995 -137 CCATTCCTCTGGCGATCGCCAAAGCTCCAG 93 77 1 GGCGATCGCC 0.499995 -33 CTTTTATAATGGCGATCGCCCTTTAATCAC 101 157 1 GGCGATCGCC 0.499995 -26 AAAGATCAGAGGCTATCGCTCTTCTATCAT 103 141 0 GGCTATCGCT 0.708943 -82 ********** Masking position 6 Map Score: 71.8456 Number of sites scoring better than the average of aligned sites = 5929 Number in coding regions = 5389 Number in noncoding regions = 540 Number of orfs with sites within 600 bp upstream = 332 Fraction of orfs with sites within 600 bp upstream = 0.0533248 Motif number 2 ACTATTATTCCTGGGGAGAACTTGCCGTCC 3 78 1 CTGGGGAGAA 0.866028 -223 TATGCATCAACAGGGCAGAAAAAACAATTT 9 140 0 CAGGGCAGAA 0.760922 -82 TGCATCAATTCAGGGCCAAGCTCCAAAACT 11 43 1 CAGGGCCAAG 0.565937 -132 CGTTACCCTGCAGGGGAAAAATTTAGCCCC 11 76 1 CAGGGGAAAA 0.829062 -99 GATTGGATTTTAGGGGCGATCGCCTTGGGA 14 115 1 TAGGGGCGAT 0.696076 -179 GCTCATGGCCCAGGGGGGATCCCAATGGGC 19 101 1 CAGGGGGGAT 0.948432 -162 TGGGATTATTCTGGGGGGATTTTTATTGGG 24 80 0 CTGGGGGGAT 0.943864 -47 TCTCCAAATTTTGGGGGGATTAGGGGGACT 26 134 1 TTGGGGGGAT 0.881831 -34 TTGGGGGGATTAGGGGGACTTTTCAAACAC 26 144 1 TAGGGGGACT 0.839319 -24 ATTTTATCCATTGGGCGGAGCATACTTTTG 30 70 0 TTGGGCGGAG 0.73325 -231 CCCTGGCGATCGGGGGAAATGTGTCCTAAG 32 29 0 CGGGGGAAAT 0.791613 -61 AGTACTATCGCAGGGGCGCAACAGTAGGTG 33 274 1 CAGGGGCGCA 0.828008 -27 GCATGGAAGTTTGGGGGGATATGATTTAGG 34 179 0 TTGGGGGGAT 0.881831 -121 CTCACACAGCTAGGGGAACTAGGCACCACC 34 280 1 TAGGGGAACT 0.667576 -20 AATAAACCCTCGGGGCGGCAGACACTTCTA 35 205 0 CGGGGCGGCA 0.85814 -96 CCGTTGTCCCTGGGGGGCGCAATGAACGA 36 10 1 CTGGGGGGCG 0.927729 -68 TATGCTGGGGGAGCGGCGCAATACG 40 109 0 TGGGGGAGCG 0.652366 -15 TCCAGAACCCTAGGGGAAAAGAAGATCAAG 42 74 0 TAGGGGAAAA 0.6828 -151 CCCCCATCGATAGGGGAAAACCACCCTGGC 42 113 0 TAGGGGAAAA 0.6828 -112 CTGCACGACTTGGGGCGGAAGTATCCAGTT 47 133 1 TGGGGCGGAA 0.742123 -152 ATTTCCCTGACTGGGGGAAGTTGGGGGTTG 48 34 1 CTGGGGGAAG 0.904196 -58 TTGCTAGGGATTGGGGGAAAGGCTTAATTC 49 74 1 TTGGGGGAAA 0.836565 -24 AGAAACTCCCCTGGGCAAAGGAGCCATAGC 50 74 0 CTGGGCAAAG 0.620242 -39 CAAAAACATCCGGGGCAACTCCTGCCCTAG 55 67 1 CGGGGCAACT 0.614674 -28 GGCATTGGCCCTGGGGGGAGAATTT 57 6 0 CTGGGGGGAG 0.932248 -231 TCCGGCAAGTTTGGGGGACTTTGAACACCA 57 173 1 TTGGGGGACT 0.826849 -64 CCCCCCAATTCTGGGGGGAATGGTGTTCAA 57 193 0 CTGGGGGGAA 0.943864 -44 CCCCCCAGAATTGGGGGGCTAGGGGAGCAT 57 205 1 TTGGGGGGCT 0.874402 -32 ACCGAACGAGTTGGGGGACTTTTCCAAACA 58 33 0 TTGGGGGACT 0.826849 -128 GGCGAGTTGATGGGGGAAAGTACAAAACTT 70 41 0 TGGGGGAAAG 0.579785 -260 TCCAGTAAGTTTGGGGGACTGGCAAGACCT 70 76 1 TTGGGGGACT 0.826849 -225 TCCCCCAATACTGGGGGACTTTGACTTAGT 70 178 1 CTGGGGGACT 0.914962 -123 CCCCCCAAGTTTGGGGGGAAACTAAGTCAA 70 198 0 TTGGGGGGAA 0.881831 -103 CTTGGGGGGCCAGGGGGGCTTTTCAAACAC 70 219 1 CAGGGGGGCT 0.944929 -82 TTAGGCGAATTGGGGCAGAAATACGCCGTA 78 26 0 TGGGGCAGAA 0.525255 -110 AACCCATTACCAGGGCGGATGCCAAACTAT 81 37 1 CAGGGCGGAT 0.892225 -264 ACGGAAGGGCCGGGGGCAATAATTTTTATT 82 102 0 CGGGGGCAAT 0.734913 -65 AGGAAATCAACAGGGCAAAAAAGGCTCGAC 82 141 0 CAGGGCAAAA 0.685841 -26 GGCTTTGCTCCAGGGCGGCAGTTTCAGGTC 86 28 0 CAGGGCGGCA 0.885364 -90 GGCAGGGGAAATTAGTGAGTAA 91 275 0 CAGGGGAAAT 0.829062 -12 TCTGTGCAACCAGGGGGACTTTTCAATTTT 92 87 0 CAGGGGGACT 0.921687 -30 TATTAAAAACCAGGGCGAAAATTTTGCCCC 93 48 1 CAGGGCGAAA 0.850264 -62 GCCAGAGGAATGGGGGCAAAATTTTCGCCC 93 60 0 TGGGGGCAAA 0.551658 -50 TTGGGGGGGTCAGGGGGGCAGTTCAAAAAC 99 13 0 CAGGGGGGCA 0.944929 -44 CCCCCCAAGGCTGGGGGGAATTTATCGGTG 99 35 1 CTGGGGGGAA 0.943864 -22 CCCCTCGCCCCAGGGGAAATGGCAATGGGT 101 119 0 CAGGGGAAAT 0.829062 -64 GAACAGACGACAGGGGCGAATCTGCTAAT 107 32 1 CAGGGGCGAA 0.837671 -19 GCCTAGTCCTTTGGGCCAAACGCCTGTAGC 108 23 1 TTGGGCCAAA 0.392622 -77 CTATGACTGGTGGGGGGACGATCTCCCTGT 109 76 0 TGGGGGGACG 0.770013 -71 TCATCTCCCACAGGGCGGCATTGTACAGCT 110 94 1 CAGGGCGGCA 0.885364 -61 TTCCAAGGAGTGGGGCAAAA 110 145 1 TGGGGCAAAA 0.431462 -10 TTTGTTTCGGCAGGGGCAAGTTTAAACATT 112 17 1 CAGGGGCAAG 0.743367 -110 GGTTTTAGGTTTGGGCGACTCTAATCAACT 115 11 1 TTGGGCGACT 0.682485 -290 CCAGCCAGAGCAGGGGAGAGGATGATGCCC 115 161 0 CAGGGGAGAG 0.852648 -140 CCTGCTCTGGCTGGGCAACTAGCTTGCGTT 115 177 1 CTGGGCAACT 0.650585 -124 ********** Masking position 5 Map Score: 57.6562 Number of sites scoring better than the average of aligned sites = 4417 Number in coding regions = 3807 Number in noncoding regions = 610 Number of orfs with sites within 600 bp upstream = 464 Fraction of orfs with sites within 600 bp upstream = 0.0745262 Motif number 3 TGTTAACCCTTCCGCCCCCTGGCAGGCCAAT 2 87 1 TCCCCCCCTG 0.950849 -60 TTTGCCGGGGTCTACCCCCTATAGCCCTTAA 9 57 0 TCTCCCCCTA 0.967695 -165 CAAATCATTCGCTGCCCCCTGGGCATTAACC 14 53 1 GCTCCCCCTG 0.86511 -241 AACGCTTACTTCTCACCCCTAACTCCTGCTG 21 42 0 TCTACCCCTA 0.688474 -88 ATTGCAACTATCAACCCCCTGGGATTATTCT 24 98 0 TCACCCCCTG 0.897506 -29 AAAATTTTATTCCGCCCCCTAAATCTCCTTA 26 62 1 TCCCCCCCTA 0.966154 -106 GGTTTATTTGCCTAGCCCCAATCCGATCGCC 35 227 1 CCTGCCCCAA 0.803747 -74 TATTTTTCCTCCTACCCCCTGTGC 40 4 0 CCTCCCCCTG 0.970388 -120 ATTCCATTCTCCCACCCCCAATATGAGTTAT 47 67 1 CCCCCCCCAA 0.959147 -218 TAGAACGGAACCAACCCCCAACTTCCCCCAG 48 44 0 CCACCCCCAA 0.913996 -48 CCCAATCAACTCTTCACCCTGACATCAGATT 54 49 0 TCTCACCCTG 0.726481 -187 ATAAAAACTATCCTCACCCAATCAACTCTTC 54 65 0 TCCCACCCAA 0.65552 -171 TAGCGCTTTTCCATCCCCCTAC 56 53 1 CCACCCCCTA 0.95425 -12 AAATTCTCCCCCCAGGGCCAATGCC 57 5 1 TCTCCCCCAG 0.911841 -232 AAGGCTATGACCCGCCCCCTAAATCTCCTCA 57 135 1 CCCCCCCCTA 0.97876 -102 AAAGTCTGATTCTGCCCCCTAAATCCCCCAA 70 155 1 TCTCCCCCTA 0.967695 -146 AAAAAGAAACTCCCCACCCTAGGTAACTGGG 71 65 1 TCCCACCCTA 0.788801 -43 CCATGGCATTCCTAGCCCCAAGGGTGATAGG 79 56 0 CCTGCCCCAA 0.803747 -88 ACTGCCCCAGCCTTACCCCTAACTAACTTAC 86 96 1 CCTACCCCTA 0.781064 -22 CTAATATCGGCCCACCGCCTAGGGGATAGCG 93 12 0 CCCCCGCCTA 0.702791 -98 GTGAGTTACCCCTCGCCCCAGGGGAAATGGC 101 126 0 CCTGCCCCAG 0.735135 -57 TTTCAGTTACCCATCCCCCTATCCCCATGAA 102 71 0 CCACCCCCTA 0.95425 -61 CATTTTCCATTCTTCACCCTACTTT 104 41 1 TCTCACCCTA 0.796715 -15 AAAGGACTAGGCAACCCCCAAACA 108 4 0 GCACCCCCAA 0.675311 -96 *** ******* Masking position 8 Map Score: 30.6774 Number of sites scoring better than the average of aligned sites = 918 Number in coding regions = 788 Number in noncoding regions = 130 Number of orfs with sites within 600 bp upstream = 132 Fraction of orfs with sites within 600 bp upstream = 0.0212014 Motif number 4 TTGGTGTGATGGAAGGAATGGATA 10 22 1 GGAGGAATGG 0.496961 -14 CCCAAGTCTTTGACACCATTGAGCAACATCA 14 164 0 TGAACCATTG 0.355744 -130 GGCAAACCTCAGGAACCATGGGTCCTGGCCA 18 62 1 AGGACCATGG 0.667138 -239 GAGAAAAGAGGGCAAGCATTGATGAAAAATG 18 232 1 GGCAGCATTG 0.696456 -69 TCGGAGCGATGGGCACCATGGACGACAACAT 30 192 1 GGGACCATGG 0.978451 -109 CAATCCTTGTGGATACCATGGGATTAATTCT 30 225 0 GGAACCATGG 0.874651 -76 TGAACCTTGGGGAACCTTGGGGTAATATTC 32 70 0 GGGACCTTGG 0.701508 -20 TTTAGGTCGGGGAGACAATGGCTAATCGGCG 34 154 0 GGAACAATGG 0.789357 -146 GTTCACCGTTTGGGAGAATGGAATAGTTAAC 40 79 0 TGGAGAATGG 0.785563 -45 ATATTGGGGGTGGGAGAATGGAATTTTTGCC 47 60 0 TGGAGAATGG 0.785563 -225 AGATAGAAGCTGCCGCCATTGGCACGGGGAT 47 209 1 TGCGCCATTG 0.452762 -76 GGTTTACAAAGGGAAGAATTGA 52 27 1 GGGAGAATTG 0.746578 -12 CCCCAATTCTGGGGGGAATGGTGTTCAAAGT 57 190 0 GGGGGAATGG 0.865388 -47 TCAACGATCTTGGTAGAATGGCGAATGTATT 63 54 1 TGGAGAATGG 0.785563 -60 ATTTGTTCGGGGACAGTGGCGATCGCCGG 63 95 0 GGGACAGTGG 0.774909 -19 AGCTGAATAATGGGACCGTGGCCAAGGGTTA 64 160 1 TGGACCGTGG 0.667873 -120 TGATCACCAATGGCACCATGGCCCAAGCCTA 64 238 1 TGGACCATGG 0.9344 -42 TGTCTACCTAGGGAACCATTGCAAGTTTTGT 70 19 1 GGGACCATTG 0.919708 -282 CTTTTCCGCTGGGTGCCATGGAAAGTTGGGA 72 38 1 GGGGCCATGG 0.961533 -103 AGGAATAAATGGCAACAATTGAAACTGACTT 75 183 0 GGCACAATTG 0.720124 -118 AAGCTTGCCCGGCGGGCATGGTAGGATATAA 76 103 1 GGCGGCATGG 0.833524 -79 AGGAATGCCATGGAACAATGGGGGTAACTTG 79 74 1 TGGACAATGG 0.884388 -70 TTATCCCTTTGGCAACCATGGCTGCAAGGGC 85 168 0 GGCACCATGG 0.94998 -133 CTGGCGGTGCGGCGACAATGGGGACAAAGAA 90 53 1 GGCACAATGG 0.910712 -194 ATTCATCCCTTGGCACAATGGTAAAAGCGAA 90 211 0 TGGACAATGG 0.884388 -36 CAACAGAATCGGCTACCATGGAGCAGAGAAA 97 28 0 GGCACCATGG 0.94998 -35 ATCTCCCACAGGGCGGCATTGTACAGCTACG 110 96 1 GGGGGCATTG 0.751229 -59 GGGGAGCAATTGTTAATTTAAA 111 2 1 GGGGCAATTG 0.772025 -50 *** ******* Masking position 9 Map Score: 29.6522 Number of sites scoring better than the average of aligned sites = 1355 Number in coding regions = 1246 Number in noncoding regions = 109 Number of orfs with sites within 600 bp upstream = 116 Fraction of orfs with sites within 600 bp upstream = 0.0186315 Motif number 5 GCAGTCAGTCCGGCCAAAGCTAATCATATTTG 12 26 0 CGCCAAAGCA 0.879633 -23 TCCTGAGGTTTGCCCAGAGGGACTTACCCATC 18 44 0 TCCCAGAGGA 0.871888 -257 GTCGTTTAGATAGCCAGAGGTAACC 18 286 1 TGCCAGAGGA 0.925844 -15 AAAATCCTTTCCGCCAAAGGTACTGTCAGTCC 30 95 1 CGCCAAAGGA 0.975235 -206 CTTGCAGGCACTGCCAAAGGGGAGCAAACCAG 30 133 1 CGCCAAAGGG 0.971995 -168 TGAATTCATCCTCCCAGCGGTGGGGTCAGACT 31 177 0 CCCCAGCGGG 0.888148 -37 TCAACTCAAGCACCCAACGGTAGTGTTGTTCC 33 186 0 CCCCAACGGA 0.922318 -115 GTTCCTAACTCCGGCAAAGGCAAAGTTAGTTA 34 37 0 CGGCAAAGGA 0.825822 -263 GAAACTCCCCTGGGCAAAGGAGCCATAGCTAG 50 71 0 TGGCAAAGGG 0.635832 -42 TCTAGGCGATCGCCCAAAGGAAAATGTCAAAA 59 66 0 CCCCAAAGGA 0.955489 -145 AACCCGGCGATCGCCAAAGCGGGGTCAACGAT 63 30 1 TGCCAAAGCG 0.729084 -84 TAGAATTGAACCGCCAACGGAGATTTTCAGGA 68 14 0 CGCCAACGGG 0.950488 -29 CGGTCAGCCTTGCCCAAAGGGAAAATAAAGCT 71 13 0 TCCCAAAGGA 0.899691 -95 CTTTCCATGGCACCCAGCGGAAAAGTGAGCAA 72 31 0 CCCCAGCGGA 0.900091 -110 GCAGCCATGGTTGCCAAAGGGATAAGCCAGGA 85 174 1 TGCCAAAGGA 0.942706 -127 GCTTTGGCGATCGCCAGAGGAATGGGGGCAAA 93 70 0 TGCCAGAGGA 0.925844 -40 AATCCCTCCCAAAGGTAGCTCTAGCTC 100 6 1 CCCCAAAGGA 0.955489 -66 GAGGATTCCTTGGCCACAGGGAGATCGTCCCC 109 61 1 TGCCACAGGA 0.705899 -86 AGAGGATTTGCGGCCAACGGCGGGAATTTGTG 110 61 1 CGCCAACGGG 0.950488 -94 GCTAGTTGCCCAGCCAGAGCAGGGGAGAGGAT 115 168 0 CGCCAGAGCG 0.830144 -133 * ******** * Masking position 6 Map Score: 21.8463 Number of sites scoring better than the average of aligned sites = 564 Number in coding regions = 525 Number in noncoding regions = 39 Number of orfs with sites within 600 bp upstream = 47 Fraction of orfs with sites within 600 bp upstream = 0.00754899 Motif number 6 TTGGGGTTGATCCCCACCGTTTGCC 7 6 0 TCCCCACCGT 0.732815 -31 TAGTCATGGTTACCCATCCAAATCATTCGC 14 35 1 TACCCATCCA 0.484176 -259 CAAAGTCCATTGCCCATCGACCCACATTTG 15 100 1 TGCCCATCGA 0.675915 -64 ACCCGCTATTACCCCGCCGCT 24 2 0 ACCCCGCCGC 0.886538 -125 TCGTCCATGGTGCCCATCGCTCCGACCATC 30 187 0 TGCCCATCGC 0.784766 -114 CTGAAGTCTGACCCCACCGCTGGGAGGATG 31 173 1 ACCCCACCGC 0.857442 -41 TTTTCGGTAATACCCGCCCCAGCAAGTCTC 35 76 1 TACCCGCCCC 0.774835 -225 AAAATTCATATCCCCGCCGCAAGCGAACGG 39 23 1 TCCCCGCCGC 0.970755 -278 CAGGGTAAATTCCCCGCCCCTTGAGGCGTA 39 99 0 TCCCCGCCCC 0.968607 -202 TGGTAACCAGCCCCCATCGATAGGGGAAAA 42 123 0 CCCCCATCGA 0.807223 -102 AAATTCCATTCTCCCACCCCCAATATGAGT 47 65 1 CTCCCACCCC 0.460903 -220 GAGCCAGCATTGCCCGCCGAAAACTGGACT 47 163 0 TGCCCGCCGA 0.813905 -122 ATTCTGGATTACCCCGGCGATCGCCACTGT 63 82 1 ACCCCGGCGA 0.674526 -32 GGTTCCCCATCGATGGTGGTCTA 64 267 0 TCCCCATCGA 0.900539 -13 AAAAAGAAACTCCCCACCCTAGGTAACTGG 71 65 1 TCCCCACCCT 0.718265 -43 GCAACGAAAAACCCCATCCCAGTTACCTAG 71 83 0 ACCCCATCCC 0.775954 -25 AGCGGGATTTTCCCCATCCCAACTTTCCAT 72 55 0 TCCCCATCCC 0.93636 -86 TCCCCGTCCACATTTGACCG 78 126 0 TCCCCGTCCA 0.9162 -10 TGGTCAATTATCCCCGGCGATCGCCGTCCT 80 16 0 TCCCCGGCGA 0.897641 -131 GGCCTTAAAATCCCCGGCCCGGCGTAGAAA 81 87 0 TCCCCGGCCC 0.934684 -214 AAAATTATTGCCCCCGGCCCTTCCGTAATA 82 106 1 CCCCCGGCCC 0.868737 -61 AACGAGATCCTTCCCACCGCTTAATCCCCG 85 269 1 TTCCCACCGC 0.665419 -32 CACCGCTTAATCCCCGCCGAGTCAAAAC 85 283 1 TCCCCGCCGA 0.949966 -18 TTAAGTTCTACCCCCGTCCACGTCCCCCAT 88 108 1 CCCCCGTCCA 0.834884 -54 ATCCTTAACACCCCCATCGAACATTT 101 7 0 CCCCCATCGA 0.807223 -176 ATTTTTCAGTTACCCATCCCCCTATCCCCA 102 75 0 TACCCATCCC 0.621349 -57 GCAAGCTAGTTGCCCAGCCAGAGCAGGGGA 115 174 0 TGCCCAGCCA 0.592081 -127 ********** Masking position 5 Map Score: 29.5023 Number of sites scoring better than the average of aligned sites = 1322 Number in coding regions = 1227 Number in noncoding regions = 95 Number of orfs with sites within 600 bp upstream = 113 Fraction of orfs with sites within 600 bp upstream = 0.0181497 Motif number 7 TTATTGTCCGTTGCTCAATTTACCGAGTGCAAAT 2 33 1 TTGATTTACC 0.608038 -114 GGCTATTATACTGGTCAATGTTCTAGGAAAATTG 11 123 0 CTGATGTTCT 0.54197 -52 TTCCCACGAATTGTTTACTTTTCTGCTAATATGT 13 149 1 TTGATTTTCT 0.846558 -152 TCATCAATGCTTGCCCTCTTTTCTCAGAATAGTT 18 223 0 TTGTTTTTCT 0.590573 -78 GGAAGAAGAATTGGCCAATTTTTCTGGGCTCATG 19 74 1 TTGATTTTTC 0.846558 -189 TTTACGACCATTGACCTTTTTTCCACCGTCATAG 30 260 1 TTGTTTTTCC 0.803638 -41 GGACAAAGTTGTAAATTTTTCTTTACAAAGAT 31 9 1 TTGATTTTCT 0.846558 -205 CCTTATTTTTTTGCCTATTTTTTCGGTAATACCC 35 57 1 TTGATTTTTC 0.846558 -244 ATGAGAGGTTTTGCTAATTTTTTTTGGTAACATG 39 235 1 TTGATTTTTT 0.660383 -66 GATCGATTAACTGCCTATTTTTCCTCCTACCCCC 40 16 0 CTGATTTTCC 0.935026 -108 TACAGGGTGATTGTTAAGTTTTTTTAACAGAAAA 42 184 1 TTGATTTTTT 0.660383 -41 CTGACTAGTTTTCCATTTAAA 43 1 1 CTGATTTTCC 0.935026 -21 GAAAAGCGTTTTGCTTAATTTTCCTTGCCATCAT 47 99 1 TTGATTTTCC 0.939953 -186 TTTGCCGCCACTGTGCATTTTTCCACAACCATCG 60 225 0 CTGATTTTCC 0.935026 -76 TTTCTAACGTCTGTGGATTTTTTTAAGCATAGCT 61 32 0 CTGATTTTTT 0.641272 -140 TCAATTGTTGTTGTTGACTTTTTTCTCTGGAGGA 66 19 0 TTGATTTTTT 0.660383 -114 AGACGGTTTTTTGGTCTTTTTTTTGCTCCC 67 7 0 TTGTTTTTTT 0.337038 -175 AGCGCTATTTTTGCTCACTTTTCCGCTGGGTGCC 72 21 1 TTGATTTTCC 0.939953 -120 GATTGATTTCTTGGTAAATGTTCCCGGGGATTAT 81 156 1 TTGATGTTCC 0.785033 -145 GCTTCTAGATTTGCTCATTTTTTCAATAATCTGT 91 177 0 TTGATTTTTC 0.846558 -110 AGATTCGCCCCTGTCGTCTGTTCCACTAATGTCA 107 21 0 CTGTTGTTCC 0.467448 -30 CGATAATTAGCTGGTAATTTTTCCAAGGAGTGGG 110 125 1 CTGATTTTCC 0.935026 -30 GAAATTGGAACTGGAAATTTTACCTGGGAACTGC 113 22 1 CTGATTTACC 0.587819 -56 TTATTTGTCCCTGTCCTGTTTTCCCCT 114 4 0 CTGTTTTTCC 0.790024 -27 TTGAAGAATTGTTGACTTTTTCTACATGTTAT 115 279 0 TTGATTTTTC 0.846558 -22 *** * ****** Masking position 9 Map Score: 20.6954 Number of sites scoring better than the average of aligned sites = 414 Number in coding regions = 324 Number in noncoding regions = 90 Number of orfs with sites within 600 bp upstream = 103 Fraction of orfs with sites within 600 bp upstream = 0.0165435 Motif number 8 TCCCCTATGGTTTGGGGTTGATCCCCACC 7 18 0 TGGTGGGGTT 0.975065 -19 GGCAGGAAAATGGTCCGGCCTTGGTGGGTTTA 15 51 0 TGGTGGCCTT 0.588524 -113 TTTGTTACCCTGGTCTGGGCCTTGTTGACCAA 24 44 0 TGGTGGGCCT 0.757833 -83 ATCGCCAGTTTGGTGGGGGCATTATTTGCTTG 27 200 1 TGGTGGGCAT 0.895382 -86 CATCTTGCCTTGGTTAGGGGTTTGCAAAAAAA 31 66 1 TGGTGGGGTT 0.975065 -148 GTATTTTACATGGTTTGGGCATCGGGATTATG 42 155 0 TGGTGGGCAT 0.895382 -70 CTGCCGCCATTGGCACGGGGATTTACTCGCCA 47 218 1 TGGCGGGGAT 0.866297 -67 AATGGGACCGTGGCCAAGGGTTAGCGACTGGA 64 168 1 TGGCAGGGTT 0.635326 -112 CCATCGATGGTGGTCTAGGCTTGGGCCATGGT 64 252 0 TGGTAGGCTT 0.697087 -28 CCTAGGTAACTGGGATGGGGTTTTTCGTTGCA 71 82 1 TGGGGGGGTT 0.832189 -26 GGGGGTAACTTGGTTGGGGGTTAAACCTTGAC 79 93 1 TGGTGGGGTT 0.975065 -51 GCATCCGCCCTGGTAATGGGTTCAAATTGGGT 81 27 0 TGGTTGGGTT 0.879222 -274 GAAATGCTGATGGTTGTGGGTTCCAGATTCAT 88 66 0 TGGTTGGGTT 0.879222 -96 TGAAATTGAGTGGCAATGGCTTTTTTCAGAAC 91 25 1 TGGCTGGCTT 0.657213 -262 CTAAGTTCCAAGGTGAGGGGTTTATGGGTTAG 95 216 0 AGGTGGGGTT 0.831463 -32 CCAGGGGAAATGGCAATGGGTTTATGCTCGCT 101 108 0 TGGCTGGGTT 0.764736 -75 TGTTTGGGGGTTGCCTAGTCCT 108 1 1 TGTTGGGGTT 0.620652 -99 TGACTATGACTGGTGGGGGGACGATCTCCCTG 109 77 0 TGGTGGGGAC 0.593328 -70 TGACCCATTGGTAAGGGTTTTGGATAATTC 112 107 0 TGGTGGGTTT 0.720329 -20 AGCTTTGTTTAGGTTTGGGCATCATCCTCTCC 115 145 1 AGGTGGGCAT 0.519175 -156 **** ****** Masking position 8 Map Score: 18.8122 Number of sites scoring better than the average of aligned sites = 449 Number in coding regions = 399 Number in noncoding regions = 50 Number of orfs with sites within 600 bp upstream = 54 Fraction of orfs with sites within 600 bp upstream = 0.00867331 Motif number 9 GTTACTTTTGCCGGGGTCTACCCCCTATAGCCC 9 61 0 CCGGTCACCC 0.846725 -161 ATTGCTTTTCCCAGGGTATTTCCT 14 280 1 CCGGTATTCC 0.725896 -14 TCAAAACAAGGCAGTGTTATTCCC 17 58 1 GCGTTTTTCC 0.716258 -14 CTTTGGCAAACCAGGTTATTCCCAGCAACGCTT 19 192 0 CCGGTATCCC 0.945155 -71 AAAAATCCCCCCAGAATAATCCCAGGGGGTTGA 24 86 1 CCGATATCCC 0.600896 -41 TGGCATTTGACCAGTATTTACCCGGGTAATTTT 27 230 1 CCGTTTACCC 0.882397 -56 GGACTTCAAAGCCTTTTTGTCCCTACTTTTTGC 30 16 1 GCTTTTTCCC 0.790247 -285 TTAGCTTTTGACTGGATTCTCCCCTCTCCATCC 35 262 1 ACGGTTTCCC 0.708617 -39 TTTTGCTGTCTATTTCCCCACAAAAGT 46 71 0 GCGTTATTCC 0.521275 -17 GGCGGGCAATGCTGGCTCCTCCCATGGATTCCA 47 175 1 GCGGTCTCCC 0.92363 -110 TAGACTCCAGCCTTTTTTTTCCCAAGCTTTCCT 50 35 0 CCTTTTTCCC 0.873601 -78 AACCGCTGCCCCCGTTTCCTTCCAAGCTGAATA 64 136 1 CCGTTCTTCC 0.720023 -144 AAAGCTTTATTTTCCCTTTGGGCAAG 71 4 1 GCTTTTTCCC 0.790247 -104 TAGAACCCTAGCGGGATTTTCCCCATCCCAACT 72 61 0 GCGGTTTCCC 0.956097 -80 CTACCCTGAGCCTGGATAAACCCTTAGTAAATT 81 253 1 CCGGTAACCC 0.810995 -48 CGATCAAAATCCTGGCTTATCCCTTTGGCAACC 85 182 0 CCGGTTTCCC 0.975581 -119 CTCAATTTCACCAATCTTTTCCCC 91 2 0 CCATTTTCCC 0.750418 -285 CGCCAAAGCTCCAGTTTTTTCCCAATT 93 93 1 CCGTTTTCCC 0.967882 -17 TTAAGTTTAGCCGTGGTTTTCCCCTCGACAAAA 96 64 1 CCTGTTTCCC 0.901603 -67 TCACCATTTTCCATTCTTCACCCTACTTT 104 37 1 CCTTTTACCC 0.632472 -19 GGGTTCCTATGCCATATCTTCCCGTTGCTGGTA 115 212 0 GCATTCTCCC 0.476495 -89 ** ** ** **** Masking position 7 Map Score: 12.9499 Number of sites scoring better than the average of aligned sites = 683 Number in coding regions = 599 Number in noncoding regions = 84 Number of orfs with sites within 600 bp upstream = 92 Fraction of orfs with sites within 600 bp upstream = 0.0147767 Motif number 10 CATTAAGCGATGGAATGGGTAATTAGTTATT 3 122 1 TGGAAGGGTA 0.815772 -179 TTGCCGTAGGTGCAAAGGCTAGACAGAATTA 9 97 0 TGCAAGGCTA 0.916745 -125 CCTGAATTGATGCAACGGCAAACTGGCAAAC 11 26 0 TGCAAGGCAA 0.937447 -149 AAAAAAAGCCAGCAACGGGGTCTTAATCTAA 14 226 1 AGCAAGGGGT 0.630699 -68 CCTAATCCAGAGCAAAGGCAAAGTCCATTGC 15 82 1 AGCAAGGCAA 0.901693 -82 GGTTGATAGTTGCAATGGCAAGAA 24 113 1 TGCAAGGCAA 0.937447 -14 TCCTAACTCCGGCAAAGGCAAAGTTAGTTAT 34 36 0 GGCAAGGCAA 0.936227 -264 AGCAAGTCTCAGGAAAGGCGAAGATGAGGGA 35 96 1 AGGAAGGCGA 0.70898 -205 CCCTGGGTAATGGAAAGGGTAGGCTTAGATT 36 54 0 TGGAAGGGTA 0.815772 -24 AGCTTAAATGCAACGGGTTTTGAAGGATG 38 9 1 TGCAAGGGTT 0.816691 -70 TAGGGATTGGGGGAAAGGCTTAATTCCAGG 49 78 1 GGGAAGGCTT 0.783329 -20 ACCTTCCAGAAGGAACGGGAATGCTGGTTCG 60 108 0 AGGAAGGGAA 0.78671 -193 CTTCTATGCGTGGAAGGGCTTCCAGCTTTCG 75 106 1 TGGAAGGCTT 0.78681 -195 AAAAATCTATGGCAAGGGCAAAAACAATCGT 76 11 1 GGCAAGGCAA 0.936227 -171 CAACCATGGCTGCAAGGGCAAACCTTAAAAT 85 156 0 TGCAAGGCAA 0.937447 -145 GGAAAAGGAAGGGGAATTGCATCAAG 88 6 1 AGGAAGGGAA 0.78671 -156 GAAATTGAGTGGCAATGGCTTTTTTCAGAAC 91 26 1 GGCAAGGCTT 0.862332 -261 ACCCCAGAGAGGCAAAGGCATAGCATTAAAC 95 181 1 GGCAAGGCAT 0.895015 -67 CCTTTCAAACTGGAATGGCAATTGATAAAGG 100 42 0 TGGAAGGCAA 0.89637 -30 CAGGGGAAATGGCAATGGGTTTATGCTCGCT 101 108 0 GGCAAGGGTT 0.813582 -75 ACCTGGGAACTGCAACGGGGTTGTCTTTGTC 113 43 1 TGCAAGGGGT 0.736177 -35 TGGAATTACCAGCAACGGGAAGATATGGCAT 115 206 1 AGCAAGGGAA 0.864693 -95 ***** ***** Masking position 5 Map Score: 20.7905 Number of sites scoring better than the average of aligned sites = 779 Number in coding regions = 706 Number in noncoding regions = 73 Number of orfs with sites within 600 bp upstream = 91 Fraction of orfs with sites within 600 bp upstream = 0.0146161 Motif number 11 TGCACCTACGGCAAACCGGCCCCAAAAAAT 9 114 1 GCAAACCGGC 0.91689 -108 TGATGCAACGGCAAACTGGCAAACTAAATC 11 20 0 GCAAACTGGC 0.95992 -155 CCACAATAATGAAAACTTCCTTGCTATCAA 27 24 1 GAAAACTTCC 0.624545 -262 AATGCCCCCACCAAACTGGCGATCGCCATA 27 193 0 CCAAACTGGC 0.959957 -93 TCATATCCCCCCAAACTTCCATGCCAAAAT 34 185 1 CCAAACTTCC 0.824474 -115 TACAACCTTTGAAAACTGCCCTTAAAACGC 54 107 0 GAAAACTGCC 0.865169 -129 TCAAAGTCCCCCAAACTTGCCGGAGCTTTA 57 167 0 CCAAACTTGC 0.861376 -70 AACGTTGTCTTAAAACTGCCGTAGTAGATG 58 92 0 TAAAACTGCC 0.594758 -69 CAAGAAAATAGCAAACTGCC 59 1 0 GCAAACTGCC 0.947696 -210 GGGGAAAGTACAAAACTTGCAATGGTTCCC 70 29 0 CAAAACTTGC 0.687588 -272 AGGAATATCTGAAAACCGGCTCGAAAAAGT 75 280 1 GAAAACCGGC 0.796209 -21 AAAAGTTTATCCAAACCGGCTATGGAGTTG 86 61 1 CCAAACCGGC 0.916891 -57 ATGGAGTTGATCAAACTGCCCCAGCCTTAC 86 82 1 TCAAACTGCC 0.805611 -36 GAACCACTTCCCAAACTGGCGATCGCCAAG 90 117 0 CCAAACTGGC 0.959957 -130 ********** Masking position 5 Map Score: 10.8351 Number of sites scoring better than the average of aligned sites = 251 Number in coding regions = 230 Number in noncoding regions = 21 Number of orfs with sites within 600 bp upstream = 24 Fraction of orfs with sites within 600 bp upstream = 0.0038548 Motif number 12 CAAAATTTACGGAAAAGTCCTT 9 210 1 GGAAAAGTCC 0.937193 -12 CCAGAGCAAAGGCAAAGTCCATTGCCCATC 15 88 1 GGCAAAGTCC 0.965968 -76 GAACGTGTTTGAAAAGTCCCCCTAATCCC 26 149 0 TGAAAAGTCC 0.845748 -19 TAAAACTATTTTCAAAATCCCCCTCTAGCC 34 231 0 TTCAAAATCC 0.371172 -69 GGGAATGGTGTTCAAAGTCCCCCAAACTTG 57 178 0 TTCAAAGTCC 0.79302 -59 CAGTTTGTTTGGAAAAGTCCCCCAACTCGT 58 28 1 GGAAAAGTCC 0.937193 -133 TGTCTAGTTAGTCAAAGTCCCTTGTCTCGG 60 270 0 GTCAAAGTCC 0.912498 -31 GGGAAACTAAGTCAAAGTCCCCCAGTATTG 70 183 0 GTCAAAGTCC 0.912498 -118 AGGAAAGCGGAAAAATCCTTGCTTGTTG 74 74 0 GGAAAAATCC 0.696882 -18 GGACTAAAATTGAAAAGTCCCCCTGGTTGC 92 82 1 TGAAAAGTCC 0.845748 -35 TGCTGATGTAGGCAGAGTCCAACCATCGGT 115 43 0 GGCAGAGTCC 0.842402 -258 ********** Masking position 6 Map Score: 7.75946 Number of sites scoring better than the average of aligned sites = 145 Number in coding regions = 118 Number in noncoding regions = 27 Number of orfs with sites within 600 bp upstream = 23 Fraction of orfs with sites within 600 bp upstream = 0.00369419 Motif number 13 GTCAATAACACCGTAACCCAAGCTT 3 286 1 CCGTAACCCA 0.897458 -15 CATTTTCCTGCCCTAATCCAGAGCAAAGGC 15 71 1 CCCTAATCCA 0.974208 -93 AGCCTAATAACCCTAATCCAGTGGGGATCA 23 79 1 CCCTAATCCA 0.974208 -24 TGAAAAGTCCCCCTAATCCCCCCAAAATTT 26 139 0 CCCTAATCCC 0.887353 -29 ATGCGGCGTTCCCTAATCCATCTGTTATCT 31 39 0 CCCTAATCCA 0.974208 -175 TTTTGCAAACCCCTAACCAAGGCAAGATGC 31 65 0 CCCTAACCAA 0.840321 -149 ATAATGCCCTGCCTAACCCAAGCGAGCCAA 49 18 1 GCCTAACCCA 0.897458 -80 ATCTGGATAATCCTAACCCATTTTGACATT 59 46 1 TCCTAACCCA 0.85518 -165 CACGACTGGGCCCTAACCCAGACCG 76 167 1 CCCTAACCCA 0.98367 -15 TTCAGAACAGCCTTAATCCATTTTAAAGGT 91 49 1 CCTTAATCCA 0.787368 -238 ********** Masking position 5 Map Score: 8.10784 Number of sites scoring better than the average of aligned sites = 85 Number in coding regions = 66 Number in noncoding regions = 19 Number of orfs with sites within 600 bp upstream = 24 Fraction of orfs with sites within 600 bp upstream = 0.0038548 Motif number 14 CCATGGGTTAATGCCCAGGGGGCAGCGAAT 14 59 0 ATGCCCAGGG 0.708591 -235 TTTTCCATACTTTCCATGGGTTAATGCCCA 14 72 0 TTTCCATGGG 0.751735 -222 CCATATTGCTTTTCCCAGGGTATTTCCT 14 276 1 TTTCCCAGGG 0.953825 -18 TTCCTGAGGTTTGCCCAGAGGGACTTACCC 18 47 0 TTGCCCAGAG 0.389834 -254 TCTGGGCTCATGGCCCAGGGGGGATCCCAA 19 96 1 TGGCCCAGGG 0.816093 -167 GGTTTATTTGTTACCCTGGTCTGGGCCTTG 24 52 0 TTACCCTGGT 0.403329 -75 ACGCCGCATCTTGCCTTGGTTAGGGGTTTG 31 60 1 TTGCCTTGGT 0.661749 -154 AGAATACTTTTTTCCTCGGTTTTTCTTGAC 31 145 0 TTTCCTCGGT 0.273103 -69 CCGTTGTCCCTGGGGGGCGCAATG 36 5 1 TGTCCCTGGG 0.687285 -73 TTTCCCTGGGTAATGGAAAG 36 68 0 TTTCCCTGGG 0.917423 -10 TATGGCTCCTTTGCCCAGGGGAGTTTCTCA 50 76 1 TTGCCCAGGG 0.957323 -37 ATTTTTCTCCTTTCCAAGGTAAATCATGGG 54 180 1 TTTCCAAGGT 0.694213 -56 AGTCAGGCATTGGCCCTGGGGGGAGAATTT 57 11 0 TGGCCCTGGG 0.704726 -226 AATCCGCTGTATTCCAAGGGATCTACAAGA 59 170 1 ATTCCAAGGG 0.378988 -41 GAAGCGACAATTTCCTGGGTAATTTGGCTT 64 100 0 TTTCCTGGGT 0.408785 -180 GTGAATGATTTTGCCTAGGGCCAACTGAAA 65 60 1 TTGCCTAGGG 0.900203 -31 CTTGCAATGGTTCCCTAGGTAGACAATCCT 70 14 0 TTCCCTAGGT 0.438756 -287 CCCATCCCAGTTACCTAGGGTGGGGAGTTT 71 71 0 TTACCTAGGG 0.556205 -37 TCCAAAACACTTTCCCAGGTAAAGCTGAAA 72 96 1 TTTCCCAGGT 0.892817 -45 CTTGGTAAATGTTCCCGGGGATTATGCCGT 81 165 1 GTTCCCGGGG 0.668964 -136 TTTTACCATTGTGCCAAGGGATGAATTTTC 90 216 1 GTGCCAAGGG 0.743423 -31 GGGGCATAATGTGCCCAGGTTGTTTACTCA 91 252 1 GTGCCCAGGT 0.810858 -35 TCACGGCTAAGTTCCAAGGTGAGGGGTTTA 95 224 0 GTTCCAAGGT 0.518292 -24 CCATTGCCATTTCCCCTGGGGCGAGGGGTA 101 121 1 TTCCCCTGGG 0.721674 -62 GCTGGTAATTTTTCCAAGGAGTGGGGCAAA 110 134 1 TTTCCAAGGA 0.208207 -21 CCGGAGAAATGTTCCTTGGGGTTGCGGGAA 112 61 0 GTTCCTTGGG 0.679211 -66 TTTCTCCGGTTTTCCTTGGTGGGCAGAATT 112 82 1 TTTCCTTGGT 0.643055 -45 CCCCGTTGCAGTTCCCAGGTAAAATTTCCA 113 33 0 GTTCCCAGGT 0.797888 -45 TTCATTAGCATTGCCTAGGGCATCGGTTGG 115 111 0 TTGCCTAGGG 0.900203 -190 ********** Masking position 5 Map Score: 14.8833 Number of sites scoring better than the average of aligned sites = 2059 Number in coding regions = 1857 Number in noncoding regions = 202 Number of orfs with sites within 600 bp upstream = 225 Fraction of orfs with sites within 600 bp upstream = 0.0361388 Motif number 15 TGTGCCTATTTTCCCAAGTCTTTGACACCATT 14 175 0 TTCCCAAGTT 0.846748 -119 ATAACCTGGTTTGCCAAAGTTTTTCAAAAATT 19 206 1 TTGCCAAATT 0.838468 -57 ACCCCAAGGTTCCCCAAGGTTCA 32 77 1 TCCCCAAGTC 0.861514 -13 GCAAGGAGTCTTGCCATGTTTCGACCCTCCGG 35 19 0 TTGCCATGTC 0.808736 -282 AAACTTGAATTTCCCAAAACTTGAATTCCCAT 39 136 1 TTCCCAAATT 0.791628 -165 ATCATTCCCATAACTTTTTGCTTAAC 41 5 1 TTCCCATATT 0.642995 -26 GGGGATTTACTCGCCATGGTTTTGATAAAGTG 47 234 1 TCGCCATGTT 0.77327 -51 AGCCTTTTTTTTCCCAAGCTTTCCTTCGTTAT 50 28 0 TTCCCAAGTT 0.846748 -85 TTTTGGTGCGTTCCCAAGCCTCTTCTGGTAGC 67 125 0 TTCCCAAGTC 0.867162 -57 CCAAGGGCGATCGCCAAGATTTTGCTAGGATC 69 45 0 TCGCCAAGTT 0.87796 -69 CCCCATCAACTCGCCAAATTTCCAGTAAGTTT 70 56 1 TCGCCAAATC 0.853894 -245 GTTTTTGCCCTTGCCATAGATTTTT 76 4 0 TTGCCATATT 0.711051 -178 TTATCTTCCTTTCCCATAAGTCTAATTGCTTA 85 87 1 TTCCCATATC 0.680302 -214 AAACTGGCGATCGCCAAGGATCATCACCTTCC 90 103 0 TCGCCAAGTC 0.894733 -144 AAAGAGAAGATTGCCAAAAGTTAGAGTCTGTT 91 79 1 TTGCCAAATT 0.838468 -208 AGAGTCTGTTTTCCCAAAACTCCAGTATTGCG 91 101 1 TTCCCAAATC 0.817804 -186 CCTCTGGCGATCGCCAAAGCTCCAGTTTTTTC 93 82 1 TCGCCAAATC 0.853894 -28 CAAAGCTTATTTGCCAAGTTTTAATTGTGCTT 95 106 1 TTGCCAAGTT 0.883028 -142 ATTTACGTTGTCGCCATACATTGACCTTAAAT 103 197 0 TCGCCATATT 0.701054 -26 ******** ** Masking position 11 Map Score: 16.0892 Number of sites scoring better than the average of aligned sites = 455 Number in coding regions = 397 Number in noncoding regions = 58 Number of orfs with sites within 600 bp upstream = 63 Fraction of orfs with sites within 600 bp upstream = 0.0101189