AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00910_synecho_reg_300.orf -o00910_synecho_300.ace -a/home/amcguire/genomes/ORF_synecho.txt -z/home/amcguire/genomes/synecho.fna -g0.48 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.48 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 sll1027 278 gltD; NADH-glutamate synthase small subunit. [EC:1.4.1.14] #2 slr1110 76 hypothetical protein. #3 slr1772 90 penicillin acylase (penicillin V amidase). [EC:3.5.1.11] #4 sll1686 300 hypothetical protein. #5 sll1502 221 gltB; ferredoxin-dependent glutamate synthase 1 (FD-gogat). #6 ssr2708 241 patA; hypothetical protein. #7 ssr2711 126 patA; hypothetical protein. #8 slr1608 234 hypothetical 45.1 kD protein slr1608. [SP:YG08_SYNY3] #9 slr1609 300 patA; long-chain-fatty-acid CoA ligase. [EC:6.2.1.3] #10 slr1756 218 glnA; glutamine synthetase (glutamate--ammonia ligase). [EC:6.3.1.2] #11 slr1761 267 ytfC; FKBP-type peptidyl-prolyl cis-trans isomerase. [EC:5.2.1.8] #12 sll1643 243 hypothetical protein. #13 slr1762 99 hypothetical protein. #14 slr1763 39 hypothetical protein. #15 sll1642 206 hypothetical protein. #16 slr1764 125 capA; cAMP binding protein. #17 sll1641 157 gad; glutamate decarboxylase. [EC:4.1.1.15] #18 sll1639 146 ureD; urease accessory protein D. [SP:URED_SYNY3] #19 sll1638 300 hypothetical protein. #20 sll1454 300 narB; nitrate reductase. [EC:1.7.99.4] [SP:NARB_SYNY3] #21 slr1347 73 icfA; carbonic anhydrase. [EC:4.2.1.1] [SP:CYNT_SYNY3] #22 slr1348 300 cysE; serine acetyltransferase (SAT). [EC:2.3.1.30] [SP:CYSE_SYNY3] #23 sll0422 120 asparaginase. [EC:3.5.1.1] #24 sll0421 109 purB; adenylosuccinate lyase (adenylosuccinase) (ASL). [EC:4.3.2.2] #25 slr0445 56 hypothetical protein. #26 sll0420 35 ureB; urease beta subunit (ureA amidohydrolase). [EC:3.5.1.5] #27 sll0419 77 hypothetical protein. #28 sll0418 68 sterol-C-methyltransferase. [EC:2.1.1.41] #29 slr0446 300 dnaX_and_dnaZ; DNA polymerase III subunit. [EC:2.7.7.7] #30 slr0288 163 glnN; glutamate-ammonia ligase. [EC:6.3.1.2] #31 slr0291 76 hypothetical protein. #32 sll0258 158 psbV, petK; cytochrome C-550 precursor (C550) (low potential #33 ssl0483 300 hypothetical protein. #34 sll0171 168 gcvT; probable aminomethyltransferase (glycine cleavage system T #35 sll0170 205 dnak2, dnaK; dnaK protein 2 (heat shock protein 70) (HSP70). #36 sll0169 187 hypothetical protein. #37 sll0168 88 hypothetical protein. #38 sll0163 300 beta transducin-like protein. [SP:Y163_SYNY3] #39 sll0069 26 hypothetical protein. #40 sll0068 157 hypothetical protein. #41 sll0067 93 gst; glutathione S-transferase. [EC:2.5.1.18] #42 sll0066 99 hypothetical protein. #43 sll0065 181 ilvN; acetolactate synthase. [EC:4.1.3.18] #44 slr0053 64 hypothetical 20.1 kD protein slr0053. [SP:Y053_SYNY3] #45 slr0054 135 dgkA; probable diacylglycerol kinase (DAGK) (diglyceride kinase) #46 slr0055 143 trpG; anthranilate synthase component II. [EC:4.1.3.27] #47 slr0056 146 G4; chlorophyll synthase 33 kD subunit. #48 sll0064 300 hypothetical protein. #49 slr0898 223 nirA; ferredoxin-nitrite reductase. [EC:1.7.7.1] #50 slr0903 154 hypothetical 16.5 kD protein slr0903. [SP:Y903_SYNY3] #51 ssr1528 158 hypothetical protein. #52 slr0904 150 hypothetical protein. #53 slr0905 300 bchE; Mg-protoporphyrin IX monomethyl ester oxidative cyclase 66 kD #54 slr0710 70 gdhA; NADP-specific glutamate dehydrogenase (NADP-gdh). [EC:1.4.1.4] #55 slr0711 191 hypothetical protein. #56 slr0712 124 hypothetical 35.1 kD protein slr0712. [SP:Y712_SYNY3] #57 sll0661 80 ycf35; Ycf35. #58 ssl1263 300 hypothetical protein. #59 sll1499 300 gltS; ferredoxin-dependent glutamate synthase 2 (FD-gogat). #60 slr0749 300 chlL, frxC; protochlorophyllide reductase iron-sulfur ATP-binding #61 sll0572 300 hypothetical protein. Motif number 1 TTCGGGGCTTGGCCATGGCCCCACCAGGGA 1 91 1 GGCCATGGCC 0.498868 -188 CCTTATTTACGGCGATCGCCCCCACCACAA 1 244 1 GGCGATCGCC 0.499991 -35 TTTTCTGTCAGCCCATCCCCATTGGTGGCA 4 101 1 GCCCATCCCC 0.979577 -200 CGGTAGGAGCCCCGATCGCCCTTAGGTCGG 6 163 1 CCCGATCGCC 0.974546 -79 ATTTTATTTACCCCACCGCCTTTGCAGAGC 9 86 1 CCCCACCGCC 0.8704 -215 TTATCCGTTTGGCGATCGCCGTTTAATTTA 10 83 1 GGCGATCGCC 0.499991 -136 TCCTACAAACGGCGATCGCCTTAGTTATAC 12 104 1 GGCGATCGCC 0.499991 -140 GACAAAAAAAGGCGATCGCCAAGGCTTTTC 22 115 1 GGCGATCGCC 0.499991 -186 ACCTGGAAAACGCCATTGCCTTGGCAGTTG 24 21 1 CGCCATTGCC 0.893385 -89 ATTAAAATCAGGCGATCGCCGC 25 45 1 GGCGATCGCC 0.499991 -12 AGATGGTTTTACCCATCCCCCTGGGGTGAT 30 139 1 ACCCATCCCC 0.891948 -25 TTGAGAATTGACCGATTCCCTTTCTCACCC 32 110 1 ACCGATTCCC 0.591879 -49 ATTTAGTCCCCCCTATCCCCGTCCCTGGCA 38 112 1 CCCTATCCCC 0.813252 -189 GAAACCCTAACCCCATGGCCCCATCATAGT 40 32 1 CCCCATGGCC 0.902461 -126 GGCTTGGGAAACCGATCCCCAGCAGAGTTT 41 29 0 ACCGATCCCC 0.924612 -65 CACTGACCCAGCCTATCACCCTTGGGGCTA 46 45 1 GCCTATCACC 0.716692 -99 ATTTTAGGACGGCGATCGCCGGGGATAATT 47 11 1 GGCGATCGCC 0.499991 -136 ATAAGAAACTGGCGATCGCCCATGGCGCGG 53 11 1 GGCGATCGCC 0.499991 -290 AAAGTAAAATGCCGATCGCCTTGGGGGTTT 53 222 1 GCCGATCGCC 0.598037 -79 TTTTGCTCAACCCCATCACCTCTGCCATAG 53 261 0 CCCCATCACC 0.872953 -40 GGGGAGTTCCGGCCATTGCCCAGATAGTGA 58 262 1 GGCCATTGCC 0.72332 -39 CCCCAAATTTGGCGATCGCCCCCATGAAGC 59 185 1 GGCGATCGCC 0.499991 -116 ********** Masking position 5 Map Score: 47.6764 Number of sites scoring better than the average of aligned sites = 7282 Number in coding regions = 6634 Number in noncoding regions = 648 Number of orfs with sites within 600 bp upstream = 434 Fraction of orfs with sites within 600 bp upstream = 0.0697077 Motif number 2 CCAATAACCTCCCAAGTTTTGGGAGAAATGAG 3 51 0 CCCAAGTTGG 0.573456 -40 GTCAGCCCATCCCCATTGGTGGCAGTAAGAGG 4 107 1 CCCCATGTGG 0.931746 -194 CTTAGTCAACCCCCATTATTCTACGAAAATGA 4 162 0 CCCCATTTCT 0.863075 -139 TTTACTGTGCCCCCATGGTTACTATTCTGTCG 4 243 0 CCCCATTTAC 0.809078 -58 AGAGGGAAAACCCTAGCTTTGGTTGGCGAGTA 9 17 0 CCCTAGTTGG 0.574167 -284 CCCCCTGGCCCCCCAAGTTTGGGGGGAAACTA 9 218 1 CCCCAATTGG 0.96611 -83 AGTCAAAGTCCCCCAGTATTGGGGGATTTAGG 9 250 1 CCCCAGTTGG 0.986397 -51 AGGCGAAATCCCCCAGAATTGCAGAGCTGTGA 11 101 0 CCCCAGTTGC 0.968707 -167 CTCTCTTTCCCCCCAAATTTGGGGGGTCAGGG 11 131 1 CCCCAATTGG 0.965534 -137 AAATCAAAATCCCCAGTATGGCGGGAGTTTTA 11 182 0 CCCCAGTGGC 0.946181 -86 TTTTGATTTTCCCCAAAATTAGGAAGCAAGGG 11 205 1 CCCCAATTAG 0.895197 -63 AACGGCCTAGCCCCAGCTTGAGCCGAAACAAC 13 70 0 CCCCAGTGAG 0.924039 -30 ACACCCCCAACGGCCTAGCCCCAGCT 13 84 0 CCCCAAGCCT 0.41883 -16 GCCAAACTTGCCCCATTTTGCTCCGAGGGAAT 22 166 0 CCCCATTGCT 0.78224 -135 GGCCCTGCCCAACTTTGTTACCCTAAAC 28 7 1 GCCCAATTGT 0.785989 -62 ACAAATAAGACCCCATACTACGAGTAGGTTAA 29 146 1 CCCCATTACG 0.685076 -155 CCTGTTTTGTCCCCATTGTCAGGGAGGCTTAG 29 231 1 CCCCATTCAG 0.761667 -70 CAATAACTAGCCCCAAGATTGTTCTTGCTGAA 29 274 0 CCCCAATTGT 0.943431 -27 TCATTAATCCCCCCAAACTTCCAAAAGCTTGA 30 74 1 CCCCAATTCC 0.798273 -90 AGCTGGTTTACCCCAGCATTGGGAGATGGTTT 30 116 1 CCCCAGTTGG 0.986392 -48 TGCATATCACCCCAGGGGGATGGGTAAAACC 30 143 0 CCCCAGGGAT 0.749375 -21 AAAATCGTCACCCCAGGGTAGGGATGTGTTGA 33 97 0 CCCCAGTAGG 0.936059 -204 GGCCCAAAGCCCCCAAATGCGGCGGGATCTTT 33 151 1 CCCCAAGCGG 0.767084 -150 AATCTGATTCCCCCAGTATTGGGGGCTAGGGG 34 40 0 CCCCAGTTGG 0.986397 -129 GGCTAGATGCCCCCATAGGTACGGAAACCTGC 35 48 1 CCCCATGTAC 0.63636 -158 TGGCTTTTCGGCCCATCGTTGTGTCTTATATT 35 154 1 GCCCATTTGT 0.810225 -52 GACTAGGCTTGCCCAGTCTTGTCACAGTGCCC 38 207 1 GCCCAGTTGT 0.903301 -94 GCTTTTCCCTGCCCATAATTGTACTAACTTCA 38 274 1 GCCCATTTGT 0.810225 -27 AACCCCATGGCCCCATCATAGTTTATTTTTAT 40 40 1 CCCCATTAGT 0.796448 -118 GGAAACCGATCCCCAGCAGAGTTTTGCAAAAA 41 21 0 CCCCAGGAGT 0.779504 -73 AAGCACGTCTCCCCAGGGTTGTCCTGAGCTCT 42 53 1 CCCCAGTTGT 0.976968 -47 CTGGGTTAGGGCCCAGTCGTGCAAAGTTAGTG 43 156 0 GCCCAGGTGC 0.737878 -26 ACCAAGTTACCCCCATTGTTCCATGGCATTCC 46 75 0 CCCCATTTCC 0.821432 -69 AACCATTGCCGCCCAGCAGAGTTCAAAGCCAT 49 108 1 GCCCAGGAGT 0.437741 -116 TCGTTAATGTCCCCAGATTTATCAGCTGTAAT 49 170 0 CCCCAGTTAT 0.927034 -54 CTTCGCTCACCCCCATCATCAGGTCAGCAACA 53 71 0 CCCCATTCAG 0.761667 -230 TTGGAGTATTCCCCAAACTGATGAATTCAGCT 53 101 0 CCCCAATGAT 0.740042 -200 GGGTAGTTCGCCCCATCTTCCTTCGTTCTCAG 59 28 1 CCCCATTCCT 0.669826 -273 CAACAAAATTGCCCAGCCTGATGGTACTACTG 59 57 0 GCCCAGTGAT 0.614575 -244 TCGTCTCCCTCCCCAAATTTGGCGATCGCCCC 59 175 1 CCCCAATTGG 0.965534 -126 TAACCACCGCCCCCAGGCTGAGGGGCCCTTTG 59 258 1 CCCCAGTGAG 0.92527 -43 CAATGGGAGACCCCAAAGGGCCCCTCAGCCTG 59 271 0 CCCCAAGGCC 0.482189 -30 ATTCTAAGTCCCCCAGTATTGGGGGATTTAGG 60 270 1 CCCCAGTTGG 0.986397 -31 CCAAAAAATTGCCCATTTTGATGGAGAAAAAC 61 77 0 GCCCATTGAT 0.421554 -224 GGAACCTTCTCCCCAATCTTGGTTCGGCCAAA 61 104 0 CCCCAATTGG 0.966119 -197 ****** **** Masking position 5 Map Score: 60.4205 Number of sites scoring better than the average of aligned sites = 1761 Number in coding regions = 1443 Number in noncoding regions = 318 Number of orfs with sites within 600 bp upstream = 253 Fraction of orfs with sites within 600 bp upstream = 0.040636 Motif number 3 CTTTTTGTTACAAACTTCCCCTCTGCCATTG 1 141 0 CAACTTCCCC 0.936469 -138 TTATTTACGGCGATCGCCCCCACCACAAGAG 1 246 1 CATCGCCCCC 0.722585 -33 ATGATCTCAGCGAATTTCCCCGACAGAATAG 4 223 1 CAATTTCCCC 0.861172 -78 CCAGCGTTGAACAATTCCCCCTAAATAATGT 5 66 0 AAATTCCCCC 0.846838 -156 TTAAGGAAACCTACCTCCCCCCCGTAATGAC 5 178 1 CACCTCCCCC 0.920351 -44 TCCACCTTAAACAATTTCCCCGGTAACGAAG 7 39 1 AAATTTCCCC 0.55604 -88 AGAGCTCGAGGCACTTCCCCCGATTAGGGGA 9 111 1 GACTTCCCCC 0.532129 -190 GATCGTGTTTGAAAAGCCCCCCTGGCCCCCC 9 201 1 GAAAGCCCCC 0.899231 -100 GAAACTAAGTCAAAGTCCCCCAGTATTGGGG 9 243 1 CAAGTCCCCC 0.939419 -58 ATTCTGCCCCCTAAATCCCCCAATACTGGGG 9 260 0 CAAATCCCCC 0.986863 -41 TTTCCAAAAGAAAAATCGCCCCCCAGAAAAA 10 52 1 AAAATCGCCC 0.800433 -167 TTCTTTCGACGAAAATCCCTC 11 1 0 GAAATCCCTC 0.677738 -267 GAAAGAGAGGCGAAATCCCCCAGAATTGCAG 11 109 0 CAAATCCCCC 0.986863 -159 GAACTTGTTTGAAAAGCCCCCCTGACCCCCC 11 151 0 GAAAGCCCCC 0.899231 -117 AACAAGTTCTAAAACTCCCGCCATACTGGGG 11 173 1 AAACTCCCGC 0.514145 -95 TGGGGAAAATCAAAATCCCCAGTATGGCGGG 11 189 0 CAAATCCCCA 0.645047 -79 CCAACCCCAGAAAATTCCCTCGGAGCAAAAT 22 153 1 AAATTCCCTC 0.398243 -148 ACACTGTCGCCAAACTTGCCCCATTTTGCTC 22 175 0 CAACTTGCCC 0.795829 -126 TTCCAACGGCCCAAAGCCCCCAAATGCGGCG 33 144 1 CAAAGCCCCC 0.97446 -157 ATTATCGAATCTGATTCCCCCAGTATTGGGG 34 48 0 CGATTCCCCC 0.614817 -121 AAAAAGCACAAAAAATCCCCCTGGTTAAAGG 34 82 0 AAAATCCCCC 0.938148 -87 CTTTGCCAGCCTAAATCGCGCCC 36 3 0 CAAATCGCGC 0.615385 -185 TTGCATTTTGCAAAATTCCTCACTAGAGTTA 43 74 0 CAAATTCCTC 0.67071 -108 TAAGATTGTTCAAAAGCGCTCGCTAGTCTGA 52 68 1 CAAAGCGCTC 0.547025 -83 AAACTTTGAGCTAACTTCCCCCAAAACTTAG 55 118 1 CAACTTCCCC 0.936469 -74 GAGCATGTTTCAAAAGTCCCCAGCTACCCCC 55 148 0 CAAAGTCCCC 0.896295 -44 GGCAATGGCCGGAACTCCCCCAGTAATTAAT 58 251 0 GAACTCCCCC 0.938346 -50 CCATGGCCAACAAAATTGCCCAGCCTGATGG 59 65 0 CAAATTGCCC 0.818177 -236 TAGTTACAAGCAAAATCGCTCAGGTTAATTT 59 145 1 CAAATCGCTC 0.703943 -156 CCAAATTTGGCGATCGCCCCCATGAAGCGGT 59 187 1 CATCGCCCCC 0.722585 -114 GTAAAATTAACCACCGCCCCCAGGCTGAGGG 59 251 1 CACCGCCCCC 0.854413 -50 AAATCTAATTCTAAGTCCCCCAGTATTGGGG 60 263 1 CAAGTCCCCC 0.939419 -38 GTCTAACCCCCTAAATCCCCCAATACTGGGG 60 280 0 CAAATCCCCC 0.986863 -21 GGTTCGGCCAAAAAATTGCCCATTTTGATGG 61 85 0 AAAATTGCCC 0.476043 -216 * ********* Masking position 9 Map Score: 40.1669 Number of sites scoring better than the average of aligned sites = 1949 Number in coding regions = 1632 Number in noncoding regions = 317 Number of orfs with sites within 600 bp upstream = 246 Fraction of orfs with sites within 600 bp upstream = 0.0395117 Motif number 4 CCCGGATTTCTGGCTTACCCTCCACGGGATA 6 221 1 TGGTTACCCC 0.509829 -21 ACCAAAGCTAGGGTTTTCCCTCTTAGCCTTAA 9 26 1 GGGTTTCCCC 0.90021 -275 TTCCCTCTTAGCCTTAACCCACCCACGGGAGA 9 41 1 GCCTAACCCC 0.605739 -260 CAGAGCTCGAGGCACTTCCCCCGATTAGGGGA 9 110 1 GGCCTTCCCC 0.709306 -191 CTGAAAGGTCGCCATTTTCCCCCTAAGAGCCG 11 35 1 GCCTTTTCCC 0.825629 -233 GGAAGCAAGGGGGCTTATCCAGTTCCGTTCTA 11 226 1 GGGTTATCCG 0.892388 -42 CTTGGAATTTTCCAGAGTGCCGTCC 12 4 1 GGATTTTCCG 0.905549 -240 CCATGGTACTGGCATTTTCCGGTTTAATGCTG 12 137 0 GGCTTTTCCG 0.968118 -107 CAAGATTAGCGGAGTTATCCACTGCTTACAAT 12 206 0 GGATTATCCC 0.874883 -38 AAGTCAGTCAGCCGTTACCCTGAAGGGAAAGT 17 104 1 GCCTTACCCG 0.876315 -54 AAGGAAAAACTGATTTTTCCTGGCGAACAGTT 20 132 1 TGATTTTCCG 0.544464 -169 CGATCGCCAAGGCTTTTCCCGCAACACCAACC 22 127 1 GGCTTTCCCC 0.968305 -174 CCAAGGCAATGGCGTTTTCCAGGTTTTTTGTA 24 13 0 GGCTTTTCCG 0.968118 -97 GGTTTTTGACTGCATTTCCCAGAACTATT 27 59 1 TGCTTTCCCG 0.828464 -19 TGTTTCCGGCGGATTTACCCTGGAAATCCACT 29 117 0 GGATTACCCG 0.918786 -184 AAATTCGGGCGGCTTTTTCCGCATTTCATCTC 38 12 0 GGCTTTTCCC 0.959913 -289 AGGTCGAATAGGCTTTTCCCTGCCCATAATTG 38 263 1 GGCTTTCCCG 0.974838 -38 GCACGACTGGGCCCTAACCCAGACCG 43 166 1 GCCTAACCCG 0.660821 -16 GTTCTAAAACGGCATAATCCCCGGGAACATTT 48 171 0 GGCTAATCCC 0.858957 -130 AATTTACTAAGGGTTTATCCAGGCTCAGGGTA 48 254 0 GGGTTATCCG 0.892388 -47 ATACCCTGTGGGAGTTTTCCCGTGGGAATCCC 49 140 0 GGATTTTCCG 0.905549 -84 TATTGTGCTTTATCCACTTTTTTTAGT 52 6 1 TGCTTATCCC 0.734104 -145 AGACATGGATGGCCTGACCCTGACTAAAAAAA 52 28 0 GGCTGACCCG 0.782738 -123 TCCGCACTTTGGAGTATTCCCCAAACTGATGA 53 109 0 GGATATTCCC 0.675223 -192 AAAGGTTCTGGGAATAATCCCGTTGCTGTTTA 61 154 1 GGATAATCCG 0.709165 -147 *** ****** * Masking position 9 Map Score: 26.8451 Number of sites scoring better than the average of aligned sites = 1392 Number in coding regions = 1275 Number in noncoding regions = 117 Number of orfs with sites within 600 bp upstream = 127 Fraction of orfs with sites within 600 bp upstream = 0.0203983 Motif number 5 GTTGTTCGGGGCTTGGCCATGGCCCCACCAGG 1 87 1 GCGGCCATGG 0.959107 -192 GTTAGCCGGCTGTGGGCCGGGGCCGTTCTTTA 8 36 1 TGGGCCGGGG 0.960296 -199 GATTAGGGGAGGCTGGGAAGGGTCTTTCTCAA 9 132 1 GGGGGAAGGG 0.908377 -169 CCCCAAACTTGGGGGGCCAGGGGGGCTTTTCA 9 210 0 GGGGCCAGGG 0.988628 -91 GTTTTAGCTCCGGTGGCCCTGGGAAAAATCTG 10 179 0 CGGGCCCTGG 0.83954 -40 CCCCAAATTTGGGGGGTCAGGGGGGCTTTTCA 11 141 1 GGGGTCAGGG 0.853156 -127 CCCGCGCTATTAATGGCCATGGTACTGGCATT 12 153 0 TAGGCCATGG 0.707851 -91 GAACCAGGACGACGGGCAAGGGCTATCTTCCC 13 32 1 GAGGCAAGGG 0.847029 -68 GCCAAAGATTGGCCTGCCAGGGGGCGGAAGGG 18 93 0 GGTGCCAGGG 0.824243 -54 AAGGCCGTCCTCAAGGGCGGGGTTTCAGACCC 22 15 0 TCGGGCGGGG 0.800421 -286 ATTCCAACTGCCAAGGCAATGGCGTTTTCCAG 24 23 0 CCGGCAATGG 0.845938 -87 AGGGTAACAAAGTTGGGCAGGGCC 28 3 0 AGGGGCAGGG 0.607265 -66 GCAACCAACAGATAGGCAGTGGACAAGGTTGA 33 28 1 GAGGCAGTGG 0.695585 -273 AAATCGTCACCCCAGGGTAGGGATGTGTTGAT 33 96 0 CCGGGTAGGG 0.528704 -205 GATCCCCGGCGGCAGGCTGTGGCAAAGGGAAC 33 219 1 GGGGCTGTGG 0.818051 -82 CCCCCAGTATTGGGGGCTAGGGGACTTTCAAT 34 31 0 TGGGCTAGGG 0.787287 -138 ACTCTTATAGTGACGGTAGGGGCTTAGTTCTC 35 86 0 TGGGTAGGGG 0.386796 -120 ACGTGTCGGCCCCAGGCAATGGATTGGAACCA 35 122 1 CCGGCAATGG 0.83502 -84 CGTTGACACTGCCAGGGACGGGGATAGGGGGG 38 119 0 GCGGGACGGG 0.523409 -182 ACCCTAGAACCGTTGGCCGGGGCAAATAATTA 40 116 0 CGGGCCGGGG 0.975605 -42 CAAGCTTGCCCGGCGGGCATGGTAGGATATAA 43 102 1 CGGGGCATGG 0.888224 -80 CTTGGGGCTAGGAATGCCATGGAACAATGGGG 46 65 1 GGTGCCATGG 0.703138 -79 TTTAGGACGGCGATCGCCGGGGATAATTGACC 47 13 1 CGCGCCGGGG 0.666882 -134 AGGTTTCTACGCCGGGCCGGGGATTTTAAGGC 48 84 1 GCGGCCGGGG 0.940643 -217 GAACTCTGCTGGGCGGCAATGGTTCGTGGATA 49 100 0 GGGGCAATGG 0.944755 -124 GGCCACGATGGAATGGCCAGGGACTACACTTT 53 39 1 GAGGCCAGGG 0.933548 -262 TAGTTCACTATCTGGGCAATGGCCGGAACTCC 58 264 0 TCGGCAATGG 0.767278 -37 TGGGCAATTTTGTTGGCCATGGTGCAGAAAAA 59 74 1 TGGGCCATGG 0.937025 -227 TACCAGTTAGCCTAGGCAGTGGTTCGTTCGCC 59 222 0 CCGGCAGTGG 0.831261 -79 ** ******** Masking position 6 Map Score: 32.1578 Number of sites scoring better than the average of aligned sites = 2930 Number in coding regions = 2679 Number in noncoding regions = 251 Number of orfs with sites within 600 bp upstream = 245 Fraction of orfs with sites within 600 bp upstream = 0.0393511 Motif number 6 CTTGTACCAATGGCAGAGGGGAAGTTTGTAA 1 134 1 TGGCAGAGGG 0.895545 -145 TCCCAAGTTTTGGGAGAAATGAGATCAAATT 3 43 0 TGGGAGAATG 0.748702 -48 CAATGGGGATGGGCTGACAGAAAAAGTACAT 4 94 0 GGGCTGAAGA 0.633134 -207 GGTCATTACGGGGGGGAGGTAGGTTTCCTTA 5 179 0 GGGGGGAGTA 0.768576 -43 AGTCAGCGTTTGGGAGAGCGGATAGTTTTTG 8 173 1 TGGGAGACGG 0.851649 -62 GAGCTAAAACTGGGTGAGATGGACTGGT 10 201 1 TGGGTGAATG 0.748702 -18 GTCGAAAGAAGGGCTGAAAGGTCGCCATTTT 11 22 1 GGGCTGAAGG 0.868792 -246 CCCCAAATTTGGGGGGAAAGAGAGGCGAAAT 11 124 0 GGGGGGAAGA 0.754391 -144 CCAAATTTGGGGGGTCAGGGGGGCTTTTCAA 11 143 1 GGGGTCAGGG 0.680243 -125 GCCTGCCAGGGGGCGGAAGGGTTAACAGTGG 18 83 0 GGGCGGAGGG 0.928178 -64 TATTATTCCTGGGGAGAACTTGCCGTCCGAT 19 80 1 GGGGAGACTT 0.475788 -221 GGTAAAGGCTTGGGTGAAGGATAGATCAGCA 23 91 0 TGGGTGAGGA 0.852539 -30 ACCCCAGCATTGGGAGATGGTTTTACCCATC 30 125 1 TGGGAGAGGT 0.80768 -39 ATATCACCCCAGGGGGATGGGTAAAACCATC 30 140 0 AGGGGGAGGG 0.81704 -24 CCATCCCCCTGGGGTGATATGCA 30 151 1 GGGGTGAATG 0.867174 -13 TCAGAATCGAGGGGAGATCTTGCTAGTTTTT 31 42 0 GGGGAGACTT 0.475788 -35 AGGTTGATTAGGGGTGATGGGAAGTTGGGCT 33 53 1 GGGGTGAGGG 0.979842 -248 TGCCAGGGACGGGGATAGGGGGGACTAAATC 38 111 0 GGGGATAGGG 0.589383 -190 GGACAACCCTGGGGAGACGTGCTTGAGGCCA 42 46 0 GGGGAGAGTG 0.94878 -54 AGGCGAATTGGGGCAGAAATACGCCGTAGCC 45 23 0 GGGCAGAATA 0.396744 -113 CCTAGCCCCAAGGGTGATAGGCTGGGTCAGT 46 46 0 AGGGTGAAGG 0.695867 -98 TACTATTCAATGGGAGAAATGGTTGGTCAAT 47 38 0 TGGGAGAATG 0.748702 -109 CCTGATGATGGGGGTGAGCGAAGCTGAATTC 53 80 1 GGGGTGACGA 0.766286 -221 ATTTTACCTATGGCAGAGGTGATGGGGTTGA 53 254 1 TGGCAGAGTG 0.765655 -47 CCCTAAGTTTTGGGGGAAGTTAGCTCAAAGT 55 120 0 TGGGGGAGTT 0.524017 -72 TTAATTGGGTGATGGAATCTAATCGA 56 6 1 TGGGTGAGGA 0.852539 -119 TAATTAATCTTGGCTGATGGGTCCCGGCAAA 58 228 0 TGGCTGAGGG 0.895545 -73 CACCGCCCCCAGGCTGAGGGGCCCTTTGGGG 59 262 1 AGGCTGAGGG 0.715028 -39 AACCAAGATTGGGGAGAAGGTTCCCAGGCAA 61 112 1 GGGGAGAGGT 0.901987 -189 ******* *** Masking position 7 Map Score: 25.2109 Number of sites scoring better than the average of aligned sites = 1754 Number in coding regions = 1540 Number in noncoding regions = 214 Number of orfs with sites within 600 bp upstream = 232 Fraction of orfs with sites within 600 bp upstream = 0.0372631 Motif number 7 GTTAATTCCAGGCAGAGATTTTGAACTGTCC 4 23 0 GGCAGAGTTT 0.881653 -278 GCGTCATGTCGGCAATAAATTAATCATTTTC 4 139 1 GGCAATAATT 0.814529 -162 GGTTGACTAAGGCAAAATTTTTGATTTGTGA 4 183 1 GGCAAAATTT 0.868751 -118 ACCACTAGCTGGCAATTATTTCGGTTTACTG 4 268 0 GGCAATTTTT 0.88387 -33 TGTGGGCCGGGGCCGTTCTTTAGAGTAACTA 8 46 1 GGCCGTTTTT 0.589698 -189 CACCGTTCAAGGCAAAACTTTTACCCAGATC 12 56 0 GGCAAAATTT 0.868751 -188 CCCCCTGGCAGGCCAATCTTTGGCTCCGTTA 18 101 1 GGCCAATTTT 0.767745 -46 TCGCAATAGTGGCAATAAATTACAGCAGATA 20 80 1 GGCAATAATT 0.814529 -221 TAAAATATTGGCAGTTAATTGAAGCGAATT 20 281 0 GGCAGTTATT 0.802644 -20 AAAAACATCCGGCCAAAAATTGAGGACAAAA 22 91 1 GGCCAAAATT 0.656047 -210 TGGTCAACAAGGCAGTGGATTTCCAGGGTAA 29 104 1 GGCAGTGATT 0.831728 -197 GTCGGCCCCAGGCAATGGATTGGAACCATGG 35 126 1 GGCAATGATT 0.893081 -80 CAAACCAGGCGGCAAAGTTTTTACCAAACAA 38 42 0 GGCAAAGTTT 0.926413 -259 CGTTGGCCGGGGCAAATAATTACCGACAAAT 40 107 0 GGCAAATATT 0.903419 -51 CTGGATTATTGGCAAATTATTTAGGTTTCGG 56 49 0 GGCAAATATT 0.903419 -76 TTGCCTTGTCGGCAGATTTTTGAGGTTTAGC 56 79 0 GGCAGATTTT 0.859743 -46 CTGCCGACAAGGCAAAGCTTTGTTTTTTGTC 56 95 1 GGCAAAGTTT 0.926413 -30 CATCAAAATGGGCAATTTTTTGGCCGAACCA 61 86 1 GGCAATTTTT 0.88387 -215 AAGGTTCCCAGGCAAAGTATTGTAACAAAGG 61 128 1 GGCAAAGATT 0.919148 -173 ******* *** Masking position 10 Map Score: 19.2349 Number of sites scoring better than the average of aligned sites = 623 Number in coding regions = 541 Number in noncoding regions = 82 Number of orfs with sites within 600 bp upstream = 83 Fraction of orfs with sites within 600 bp upstream = 0.0133312 Motif number 8 TTAGTCAACCAGATGTTGGGCAATACTGGGAA 3 11 1 AGATTGGGCA 0.534775 -80 TAACCTCCCAAGTTTTGGGAGAAATGAGATCA 3 47 0 AGTTGGGAGA 0.794657 -44 AAACTTGGGAGGTTATTGGGCATTTTTAGGCA 3 64 1 GGTTTGGGCA 0.83752 -27 GTCAGTCCCTAGCTGCTGGAGACCACCGCT 5 9 0 AGCTTGGAGA 0.692631 -213 AACGAAGGCGGGTTAGTGGCCAGTTGATTTGG 7 63 1 GGTTTGGCCA 0.536776 -64 GAGAGCGGATAGTTTTTGGGGAAGAAATTAGA 8 186 1 AGTTTGGGGA 0.953631 -49 TGGCCCCCCAAGTTTGGGGGGAAACTAAGTCA 9 223 1 AGTTGGGGGA 0.94405 -78 TATGCTTGTTGGCTGGTGGGGAGGAGTTTATT 29 27 1 GGCTTGGGGA 0.929921 -274 TCTTGGGGCTAGTTATTGGGGAA 29 288 1 AGTTTGGGGA 0.953631 -13 AGCTTTTGGAAGTTTGGGGGGATTAATGATCG 30 71 0 AGTTGGGGGA 0.94405 -93 AACTTCCAAAAGCTTGAGGGGACTTTAAGCTG 30 89 1 AGCTAGGGGA 0.774774 -75 TTATACCAACAGTTTGAGGAGAACCTTT 32 141 1 AGTTAGGAGA 0.622855 -18 TAGCACTGACGGTTTCTGGGGAGTCGGAAGAC 36 107 0 GGTTTGGGGA 0.96525 -81 TCAGTTTAAAAGCTTATGGGGAAATAGCACGG 36 141 0 AGCTTGGGGA 0.907622 -47 CCAGGGACGGGGATAGGGGGGACTAAATCACC 38 108 0 GGATGGGGGA 0.872833 -193 CCCGGCCAACGGTTCTAGGGTAGGTAGATTTG 40 127 1 GGTTAGGGTA 0.444749 -31 GGGCGGCAATGGTTCGTGGATAGGTAGGTAAC 49 90 0 GGTTTGGATA 0.344133 -134 CTACCCCCTAAGTTTTGGGGGAAGTTAGCTCA 55 124 0 AGTTGGGGGA 0.94405 -68 AAACTTAGGGGGTAGCTGGGGACTTTTGAAAC 55 141 1 GGTATGGGGA 0.630659 -51 CCCATGAAGCGGTTAAAGGCGAACGAACCACT 59 205 1 GGTTAGGCGA 0.686155 -96 ATTACCAATAGGATGCTGGCGACGAAATTTAA 60 61 1 GGATTGGCGA 0.652865 -240 GGCCGAACCAAGATTGGGGAGAAGGTTCCCAG 61 107 1 AGATGGGAGA 0.538227 -194 **** ****** Masking position 12 Map Score: 22.7667 Number of sites scoring better than the average of aligned sites = 570 Number in coding regions = 475 Number in noncoding regions = 95 Number of orfs with sites within 600 bp upstream = 88 Fraction of orfs with sites within 600 bp upstream = 0.0141343 Motif number 9 TTCATGGTCTAGTTTCTAGGTTCTTTGAGCT 2 27 1 AGTTTTAGGT 0.333361 -50 AAAACTTGGGAGGTTATTGGGCATTTTTAGG 3 63 1 AGGTTTTGGG 0.827629 -28 GAGAGCGGATAGTTTTTGGGGAAGAAATTAG 8 186 1 AGTTTTGGGG 0.980789 -49 TGGCCCCCCAAGTTTGGGGGGAAACTAAGTC 9 223 1 AGTTTGGGGG 0.970335 -78 AAAGTCCCCCAGTATTGGGGGATTTAGGGGG 9 254 1 AGTATGGGGG 0.822842 -47 AAACGGATAATTTTTCTGGGGGGCGATTTTT 10 62 0 TTTTTTGGGG 0.438587 -157 CCTGGTTCTTAGTTTTTTGGTTAGTTCCT 13 9 0 AGTTTTTGGT 0.669637 -91 TACTCAAGCTTGTTTATGGGGTGCTTGCTCC 19 155 1 TGTTTTGGGG 0.930302 -146 CTCCGAGGGAATTTTCTGGGGTTGGTGTTGC 22 147 0 ATTTTTGGGG 0.749251 -154 GGTGGGGAGGAGTTTATTGGGCGGAAACAGT 29 41 1 AGTTTTTGGG 0.891651 -260 TCTTGGGGCTAGTTATTGGGGAA 29 288 1 AGTTATGGGG 0.883374 -13 AGCTTTTGGAAGTTTGGGGGGATTAATGATC 30 72 0 AGTTTGGGGG 0.970335 -92 AACTTCCAAAAGCTTGAGGGGACTTTAAGCT 30 89 1 AGCTTAGGGG 0.523415 -75 TGATTCCCCCAGTATTGGGGGCTAGGGGACT 34 37 0 AGTATGGGGG 0.822842 -132 CTGGCAAAGCAGGTTTTTGGTTTTTTTTGGA 36 25 1 AGGTTTTGGT 0.541838 -163 TAGCACTGACGGTTTCTGGGGAGTCGGAAGA 36 108 0 GGTTTTGGGG 0.829947 -80 TCAGTTTAAAAGCTTATGGGGAAATAGCACG 36 142 0 AGCTTTGGGG 0.93884 -46 GCTGGGTCAGTGTTTTTGGGTACGCTAGTCA 46 26 0 TGTTTTGGGT 0.766771 -118 GGGGGTAACTTGGTTGGGGGTTAAACCTTGA 46 93 1 TGGTTGGGGT 0.551357 -51 GCATCCGCCCTGGTAATGGGTTCAAATTGGG 48 28 0 TGGTATGGGT 0.221539 -273 AGGTGAACTGAGTTTGTGGGTCGACT 51 6 0 AGTTTTGGGT 0.926334 -153 CCTATGGCAGAGGTGATGGGGTTGAGCAAAA 53 260 1 AGGTGTGGGG 0.721624 -41 CTACCCCCTAAGTTTTGGGGGAAGTTAGCTC 55 125 0 AGTTTGGGGG 0.970335 -67 CCAGTTTCTTAGCTAGTTGGGCCAAAACTAG 58 185 1 AGCTATTGGG 0.268532 -116 TAAGTCCCCCAGTATTGGGGGATTTAGGGGG 60 274 1 AGTATGGGGG 0.822842 -27 ATTGTAACAAAGGTTCTGGGAATAATCCCGT 61 146 1 AGGTTTGGGA 0.567994 -155 ***** ***** Masking position 9 Map Score: 19.1947 Number of sites scoring better than the average of aligned sites = 790 Number in coding regions = 671 Number in noncoding regions = 119 Number of orfs with sites within 600 bp upstream = 111 Fraction of orfs with sites within 600 bp upstream = 0.0178285 Motif number 10 TGGGCAATACTGGGAAAATTTGATCTCATT 3 27 1 TGGGAAAATT 0.759868 -64 GGGCATTTTTAGGCAAATTT 3 81 1 AGGCAAATTT 0.822545 -10 TAGCTCGGAATGGCAAATTAACTATATCCA 4 65 0 TGGCAAATTA 0.600155 -236 GGGTTGACTAAGGCAAAATTTTTGATTTGT 4 182 1 AGGCAAAATT 0.878847 -119 TAAGGCTAAGAGGGAAAACCCTAGCTTTGG 9 27 0 AGGGAAAACC 0.466185 -274 TCACCGTTCAAGGCAAAACTTTTACCCAGA 12 58 0 AGGCAAAACT 0.836591 -186 GTTACCCTGAAGGGAAAGTTAATCTCCATT 17 117 1 AGGGAAAGTT 0.817087 -41 TAATCTCCATTGGCAAAATTGTAATAATCA 17 136 1 TGGCAAAATT 0.878847 -22 TTAAAACAGCAGGGAAAATTAAGTATTAAT 28 42 0 AGGGAAAATT 0.759868 -27 CGATTTAGGCTGGCAAAGCAGGTTTTTGGT 36 16 1 TGGCAAAGCA 0.700627 -172 TCAAACCAGGCGGCAAAGTTTTTACCAAAC 38 44 0 CGGCAAAGTT 0.79717 -257 CCTGGTTTGATGGCAAATTCGGGATAATGA 38 64 1 TGGCAAATTC 0.644452 -237 TATGACGTGTTGGCAAAGTTACATAAAAAC 48 117 1 TGGCAAAGTT 0.911035 -184 GGGATTCCCACGGGAAAACTCCCACAGGGT 49 140 1 CGGGAAAACT 0.461536 -84 CAAGATAACATGGGAAAATTTTCACTAAAG 51 54 1 TGGGAAAATT 0.759868 -105 GCTGGATTATTGGCAAATTATTTAGGTTTC 56 51 0 TGGCAAATTA 0.600155 -74 TCTGCCGACAAGGCAAAGCTTTGTTTTTTG 56 94 1 AGGCAAAGCT 0.878453 -31 TTCTCAGAAAAGGCAAAGCCAGCGCCGCAA 58 85 1 AGGCAAAGCC 0.73864 -216 CGCTAGGATATGGCAAATTTAAACTTTGAT 61 47 0 TGGCAAATTT 0.822545 -254 GAAGGTTCCCAGGCAAAGTATTGTAACAAA 61 127 1 AGGCAAAGTA 0.768304 -174 ********** Masking position 5 Map Score: 10.44 Number of sites scoring better than the average of aligned sites = 812 Number in coding regions = 684 Number in noncoding regions = 128 Number of orfs with sites within 600 bp upstream = 142 Fraction of orfs with sites within 600 bp upstream = 0.0228076 Motif number 11 GCAATTATTTCGGTTTACTGTGCCCCCATGGTTA 4 254 0 CGGTACTGCC 0.973587 -47 GGGCCATAATCGGTGAACTAGGCCGGTTATTGAA 10 144 1 CGGTACTGCC 0.973587 -75 TTGCCTTGAACGGTGATATTAGCCAAATGAACTC 12 72 1 CGGTTATGCC 0.762985 -172 TGGATAACTCCGCTAATCTTGCCCTTTCTGAGTC 12 217 1 CGCTTCTCCC 0.724937 -27 TAATCACTAACGGTTTCCTTTCCCATCTACGATC 23 51 1 CGGTCCTCCC 0.97732 -70 TCGGACAAAACGGTATCCTATGCTACATAATTTT 29 181 0 CGGTCCTGCT 0.933685 -120 CCGAGATATGCTGTGCCCTATGCCATTGCTGGAA 33 182 0 CTGTCCTGCC 0.933685 -119 ATGCCATTCTCGGTTCCCTTTGCCACAGCCTGCC 33 229 0 CGGTCCTGCC 0.993833 -72 TGCTGGGGATCGGTTTCCCAAGCCAGGACAACAT 41 35 1 CGGTCCCGCC 0.971105 -59 GAACTAATTGCGCTACCCTGAGCCTGGATAAACC 48 241 1 CGCTCCTGCC 0.97732 -60 **** *** *** Masking position 4 Map Score: 8.41023 Number of sites scoring better than the average of aligned sites = 124 Number in coding regions = 113 Number in noncoding regions = 11 Number of orfs with sites within 600 bp upstream = 13 Fraction of orfs with sites within 600 bp upstream = 0.00208802 Motif number 12 AATGGATTTAAAGTCAAAGCCCGCCGAGG 7 108 1 AATCAAGCCC 0.983915 -19 GGGGGAAACTAAGTCAAAGTCCCCCAGTATTG 9 239 1 AATCAAGTCC 0.93809 -62 ATTTTGGGGAAAATCAAAATCCCCAGTATGGC 11 192 0 AATCAAATCC 0.723711 -76 ACTTTTACCCAGATCCAAGCCCTAATTTTCGA 12 39 0 AGTCAAGCCC 0.974563 -205 CTTTTCCCGCAACACCAACCCCAGAAAATTCC 22 139 1 AAACAACCCC 0.779748 -162 TGCACTTCCGAGAACTAAGCCCCTACCGTCAC 35 77 1 AGACAAGCCC 0.938501 -129 ATTGAATAGTAAAACCAAGCCCGGTCTACTCT 47 58 1 AAACAAGCCC 0.960576 -89 AAAAGCGTGCAATTCCAAGCCCAGGAAGCTAG 47 94 0 AATCAAGCCC 0.983915 -53 CGCCCAGCAGAGTTCAAAGCCATGGGATTCCC 49 117 1 AGTCAAGCCA 0.751168 -107 GCCATAGGTAAAATCGAAACCCCCAAGGCGAT 53 236 0 AATCAAACCC 0.913604 -65 AGAGAAATCTAATTCTAAGTCCCCCAGTATTG 60 259 1 AATCAAGTCC 0.93809 -42 ** ** ****** Masking position 7 Map Score: 8.43937 Number of sites scoring better than the average of aligned sites = 160 Number in coding regions = 149 Number in noncoding regions = 11 Number of orfs with sites within 600 bp upstream = 10 Fraction of orfs with sites within 600 bp upstream = 0.00160617 Motif number 13 CGAAGTATTTTTAGCAAAAAATCAGCAATCA 1 15 0 TTGCAAAAAA 0.766721 -264 CTGAAGGAGATGAACAAAAAAAGAGACTTTG 6 68 0 TGACAAAAAA 0.876091 -174 TGGTCTAGAAATAACAAAAAATTAAATTAAA 10 104 0 ATACAAAAAA 0.815963 -115 TTCTTCCCATTCCACAAAAAATCTAAACACA 16 74 1 TCACAAAAAA 0.61849 -52 TTTAAAAATATTCACAAAAAATTCTTCGGTA 19 27 0 TTACAAAAAA 0.886021 -274 CCAAAAATTGAGGACAAAAAAAGGCGATCGC 22 103 1 AGACAAAAAA 0.801298 -198 ATTACAAAAAACCTGGAAAAC 24 1 1 ATACAAAAAA 0.815963 -109 TACGAGTAGGTTAAGAAAAAATTATGTAGCA 29 164 1 TTAGAAAAAA 0.563449 -137 TCCTAAAAAAAGCACAAAAAATCCCCCTGGT 34 88 0 AGACAAAAAA 0.801298 -81 GGAATTATTAGTCACAAAAAAGCTGTCGTAT 36 53 1 GTACAAAAAA 0.61849 -135 CCAGCAGAGTTTTGCAAAAAAGTTATCGCC 41 10 0 TTGCAAAAAA 0.766721 -84 GTGATGGGGTTGAGCAAAAAATATTCTGACC 53 272 1 TGGCAAAAAA 0.749337 -29 ATTAATGTGGACAAAAAACAAAGCTTTG 56 107 0 TGACAAAAAA 0.876091 -18 AGGAAATTACAAAAAAATTAGAAGAA 57 65 0 ATACAAAAAA 0.815963 -16 GGCTCGTCTTTTAAGAAAAAATATGACGATG 60 142 0 TTAGAAAAAA 0.563449 -159 ** ******** Masking position 6 Map Score: 7.19714 Number of sites scoring better than the average of aligned sites = 131 Number in coding regions = 78 Number in noncoding regions = 53 Number of orfs with sites within 600 bp upstream = 52 Fraction of orfs with sites within 600 bp upstream = 0.00835207 Motif number 14 ACCAAGCTGACCCCCTAGACCGCTCTCCTAAA 8 132 1 CCCCTAGCCG 0.960595 -103 TTTGAAAAGCCCCCCTGGCCCCCCAAGTTTGG 9 208 1 CCCCTGGCCC 0.931404 -93 TCTGATTCTGCCCCCTAAATCCCCCAATACTG 9 263 0 CCCCTAATCC 0.939144 -38 TTTGAAAAGCCCCCCTGACCCCCCAAATTTGG 11 143 0 CCCCTGACCC 0.894112 -125 ACACCCCCAACGGCCTAGCCCCAGCTTGAGCC 13 78 0 CGCCTAGCCC 0.954369 -22 TGACTAAATCCGACCTAGTTCGACTTTACGAA 15 69 0 CACCTAGTCG 0.456368 -138 AGTACCAGACCACCCTAACTCCCTAGGGAGCA 19 180 0 CCCCTAATCC 0.939144 -121 CAAATAGTCACCTCCTATGCCCCTCCACATCC 22 251 1 CTCCTATCCC 0.791419 -50 GTATTGAAAGTCCCCTAGCCCCCAATACTGGG 34 29 1 TCCCTAGCCC 0.790477 -140 CCTGCTTTGCCAGCCTAAATCGCGCCC 36 6 0 CGCCTAATCG 0.678226 -182 TGATTTAGTCCCCCCTATCCCCGTCCCTGGCA 38 110 1 CCCCTATCCC 0.914634 -191 CAACCTGGGAAACCCTAACCCCATGGCCCCAT 40 24 1 ACCCTAACCC 0.885311 -134 GTTCCATGGCATTCCTAGCCCCAAGGGTGATA 46 58 0 ATCCTAGCCC 0.81467 -86 CCTCTCAATTCGGCCTAAGTCGGTCAAGGTTT 46 115 0 CGCCTAATCG 0.663921 -29 TTAGGGTTCTAGTCCTAGTCCGCTTCCCCATC 49 200 0 ATCCTAGCCG 0.633618 -24 TTTTCTGCTGCTTCCTAATCCCGTCCATTTTT 54 22 0 CTCCTAACCC 0.931739 -49 AAGCAACTAATCCTAGTTCCTAGGAGCATG 55 172 0 ATCCTAGTCC 0.637682 -20 GTCTAACCCCCTAAATCCCCCAATACTG 60 283 0 CCCCTAATCC 0.939144 -18 * ****** *** Masking position 6 Map Score: 17.0614 Number of sites scoring better than the average of aligned sites = 521 Number in coding regions = 385 Number in noncoding regions = 136 Number of orfs with sites within 600 bp upstream = 112 Fraction of orfs with sites within 600 bp upstream = 0.0179891 Motif number 15 TTTAGCAAAAAATCAGCAATCAAACC 1 4 0 AACAGCACAA 0.796083 -275 CTAGGACAAAAATCCGCCAAAAA 11 255 1 AACCGCCAAA 0.943066 -13 AGATTTTATTAAACAGGAAAAAACATCCGGCCA 22 73 1 AACAGGAAAA 0.707681 -228 CAGGAAAAAACATCCGGCCAAAAATTGAGGACA 22 86 1 CACCGGCAAA 0.693706 -215 AGAGAATCTGCCCAAAAGATTAGGTTT 25 5 1 AACTGCCAAA 0.889136 -52 AACTCCTCCCCACCAGCCAACAAGCATATTTAG 29 22 0 CACAGCCCAA 0.816161 -279 TTCCAGGGTAAATCCGCCGGAAACAAATAAGAC 29 124 1 AACCGCCAAA 0.943059 -177 AATGGGGACAAAACAGGCGCAAAAGGGGCTTAG 29 215 0 AACAGGCAAA 0.911152 -86 GAGCCATAGCAACCAGCCGACAATG 32 3 0 AACAGCCCAA 0.942979 -156 AATGCGGAAAAAGCCGCCCGAATTTGTTTGGTA 38 19 1 AACCGCCAAT 0.602593 -282 TTTGCCATCAAACCAGGCGGCAAAGTTTTTACC 38 48 0 AACAGGCCAA 0.893874 -253 ATCTAGGATTAAACAGCATCAAATCGGAGAAAA 41 67 1 AACAGCAAAA 0.826184 -27 CGGGATTAGGAAGCAGCAGAAAAACACCATTCC 54 31 1 AACAGCAAAA 0.826184 -40 AAACCTCAAAAATCTGCCGACAAGGCAAAGCTT 56 82 1 AACTGCCCAA 0.868197 -43 ACTAGCTAAGAAACTGGCATAAATTGTAGCAAA 58 169 0 AACTGGCAAA 0.803335 -132 ** ***** *** Masking position 2 Map Score: 8.76528 Number of sites scoring better than the average of aligned sites = 294 Number in coding regions = 256 Number in noncoding regions = 38 Number of orfs with sites within 600 bp upstream = 41 Fraction of orfs with sites within 600 bp upstream = 0.00658529