AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00950_synecho_reg_300.orf -o00950_synecho_300.ace -a/home/amcguire/genomes/ORF_synecho.txt -z/home/amcguire/genomes/synecho.fna -g0.48 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.48 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: slr1724 167 hypothetical protein. slr0220 175 glyS; glycyl-tRNA synthetase beta chain (glycine--tRNA ligase beta slr0049 25 hypothetical protein. Input sequences: #1 slr0723 78 hypothetical protein. #2 slr0724 83 sohA; HtaR suppressor protein. #3 slr0725 300 hypothetical protein. #4 slr1099 300 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase. [EC:4.1.1.-] #5 sll1191 233 hypothetical protein. #6 ssr2153 300 hypothetical protein. #7 sll0938 40 aspartate transaminase. [EC:2.6.1.1] #8 ssl1792 33 hypothetical protein. #9 sll0936 83 hypothetical protein. #10 slr0969 102 cbiH; precorrin methylase. #11 slr0971 82 hypothetical protein. #12 sll0934 195 ccmA; carboxysome formation protein. [EC:5.4.99.5] #13 ssl1784 164 rpsO, rps15; 30S ribosomal protein S15. [SP:RS15_SYNY3] #14 sll0932 100 hypothetical protein. #15 sll0931 171 hypothetical protein. [EC:2.1.1.45] #16 sll0930 43 hypothetical protein. #17 sll0928 111 apcD; allophycocyanin-B. #18 sll0927 168 metX; S-adenosylmethionine synthetase. [EC:2.5.1.6] #19 sll0925 266 hypothetical 23.0 kD protein sll0925. [SP:Y925_SYNY3] #20 slr0974 300 infC; translation initiation factor IF-3. [SP:IF3_SYNY3] #21 sll1909 77 prmA; probable methyltransferase. [EC:2.1.1.-] [SP:PRMA_SYNY3] #22 sll1908 260 serA; phosphoglycerate dehydrogenase. [EC:1.1.1.95] #23 slr1990 21 hypothetical protein. #24 slr1991 40 cyaA; adenylate cyclase. [EC:4.6.1.1] #25 slr1992 209 glutathione peroxidase. [EC:1.11.1.9] #26 slr1993 101 thl; acetyl coenzyme A acetyltransferase (thiolase). #27 slr1994 60 fabG; 3-oxoacyl-[acyl-carrier protein] reductase (3-ketoacyl-acyl #28 sll1906 60 428 aa (44.5 kD) bacteriochlorophyll synthase subunit. #29 sll1905 68 sensory transduction histidine kinase. #30 slr1998 32 hypothetical protein. #31 slr1999 38 hypothetical protein. #32 slr2000 257 hypothetical protein. #33 slr2001 147 pepE; peptidase E (alpha-aspartyl dipeptidase). [EC:3.4.-.-] #34 slr2002 32 hypothetical protein. #35 sll1902 300 hypothetical protein. #36 sll1605 262 fabZ; (3R)-hydroxymyristol acyl carrier protein dehydrase. #37 slr1718 78 hypothetical protein. #38 slr1719 129 drgA; drgA protein. [SP:DRGA_SYNY3] #39 slr1720 25 aspS; aspartyl-tRNA synthetase (aspartate--tRNA ligase) (aspRS). #40 slr1721 102 hypothetical protein. #41 slr1722 126 guaB; IMP dehydrogenase subunit. [EC:1.1.1.205] #42 sll1601 96 hypothetical protein. #43 ssl3127 285 hypothetical protein. #44 sll1599 98 mntA; manganese transport system ATP-binding protein mntA. #45 sll1598 143 mntC; Mn transporter MntC. #46 ssr2898 300 transposase. #47 sll0006 103 aspC; aspartate aminotransferase. [EC:2.6.1.1] #48 sll0005 187 hypothetical 77.3 kD protein sll0005. [SP:Y005_SYNY3] #49 slr0020 100 recG; DNA recombinase. [EC:3.6.1.-] #50 slr0021 65 putative protease slr0021. [EC:3.4.-.-] [SP:Y021_SYNY3] #51 sll0002 226 ponA; penicillin-binding protein 1A. #52 tRNA-Ser-4 225 tRNA-Ser. #53 slr0213 87 guaA; probable GMP synthase (glutamine-hydrolysing) (glutamine #54 sll0210 114 bacA; bacitracin resistance; possibly phosphorylates undecaprenol. #55 slr0216 127 cobU; cobinamide kinase. #56 slr0217 238 hypothetical protein. #57 ssr0349 258 hypothetical protein. #58 sll0209 218 hypothetical protein. #59 sll0208 257 hypothetical protein. #60 sll0207 157 rfbA; glucose-1-phosphate thymidylyltransferase. [EC:2.7.7.24] #61 sll0205 286 hypothetical protein. #62 sll0204 136 gidA; glucose inhibited division protein A. #63 sll0202 129 gidA; glucose inhibited division protein A. [SP:GIDA_SYNY3] #64 sll0200 300 transposase. #65 sll0402 122 aspC; aspartate aminotransferase. [EC:2.6.1.1] #66 sll0401 193 gltA; citrate synthase. [EC:4.1.3.7] [SP:CISY_SYNY3] #67 sll0400 62 hypothetical protein. [SP:Y400_SYNY3] #68 slr0440 93 hypothetical protein. #69 ssr0102 74 ycf40; hypothetical protein. #70 sll0072 31 hypothetical protein. #71 sll0071 93 hypothetical protein. #72 sll0070 90 purU; formyltetrahydrofolate deformylase (formyl-fh(4) hydrolase). #73 sll0069 26 hypothetical protein. #74 sll0068 157 hypothetical protein. #75 sll0067 93 gst; glutathione S-transferase. [EC:2.5.1.18] #76 sll0066 99 hypothetical protein. #77 sll0065 181 ilvN; acetolactate synthase. [EC:4.1.3.18] #78 slr0053 64 hypothetical 20.1 kD protein slr0053. [SP:Y053_SYNY3] #79 slr0054 135 dgkA; probable diacylglycerol kinase (DAGK) (diglyceride kinase) #80 slr0055 143 trpG; anthranilate synthase component II. [EC:4.1.3.27] #81 slr0056 146 G4; chlorophyll synthase 33 kD subunit. #82 sll0064 300 hypothetical protein. #83 slr0095 161 hisB; O-methyltransferase. [EC:2.1.1.-] #84 slr0096 29 hisB; low affinity sulfate transporter. #85 slr0498 246 hisB; hypothetical protein. #86 sll0489 286 hisB; ABC transporter. #87 sll0488 116 hypothetical protein. #88 sll0487 109 hypothetical protein. #89 sll0486 173 hypothetical protein. #90 sll0485 247 hypothetical protein. #91 sll0484 130 ABC transporter. #92 slr0502 62 cobW; CobW. #93 slr0505 121 hypothetical protein. #94 slr0506 56 pcr; protochlorophyllide oxido-reductase. [EC:1.3.1.33] #95 sll0481 71 hypothetical protein. [SP:Y481_SYNY3] #96 sll0480 182 hypothetical protein. #97 slr0509 131 alkaline phosphatase-like. #98 slr0510 222 hypothetical protein. #99 ssr0871 55 transposase. #100 slr0511 300 transposase. #101 sll0034 62 hypothetical protein. #102 sll0033 160 hypothetical protein. #103 sll0031 300 hypothetical protein. Motif number 1 GAAGATATTTGCCCATCCCCTATTTCTTGA 2 27 0 GCCCATCCCC 0.929395 -57 CTTTCACACTGGCGATCGCCATTTGGAATC 3 272 0 GGCGATCGCC 0.499971 -29 CCGCGGTCCTGCCCATCGGCGGGCTTAAGA 6 53 0 GCCCATCGGC 0.75367 -248 CGACCAGGATGGCGATCTCCAACGAGAATT 9 18 0 GGCGATCTCC 0.633004 -66 AGAAACCCACCGCCATCTTCGTTA 16 30 0 ACCCACCGCC 0.681447 -14 TAAATATCTTTACGATCGCCATTGGCTAGC 19 188 0 TACGATCGCC 0.770655 -79 AGTATCCTGGGCCGATCTCCGTAGCCCATT 22 230 0 GCCGATCTCC 0.91057 -31 GATCCTCATAGGCGATCGCCGGGGGGGATT 25 93 0 GGCGATCGCC 0.499971 -117 AGGTTCTAGGCCCGATCGCCACCGAAAACC 36 139 0 CCCGATCGCC 0.933874 -124 CCACCAAACTGGCGATCGCCATAATAGTTG 43 186 0 GGCGATCGCC 0.499971 -100 CGTCCATGGTGCCCATCGCTCCGACCATCA 46 186 0 GCCCATCGCT 0.721833 -115 ATTCCTGACTGCCGATCGCC 52 1 0 GCCGATCGCC 0.536037 -225 GTGTTTGCTGTTCGATCGCCTTTGAGTAGA 56 199 0 TTCGATCGCC 0.770655 -40 AGTTAACGACTCCGATCGCCATAAAGCTTT 58 155 0 TCCGATCGCC 0.929066 -64 AAGGAGAAGGCCCCATCTCCTGAAGAATGG 62 50 0 CCCCATCTCC 0.638476 -87 GCTTAAAAGATGCGATCGCCAAAACGCAGA 64 86 0 TGCGATCGCC 0.645407 -215 GAGTTTGCCGGCCCATCGCCTCTAACTTCC 67 23 1 GCCCATCGCC 0.947926 -40 GGCTTGGGAAACCGATCCCCAGCAGAGTTT 75 29 0 ACCGATCCCC 0.835087 -65 AATTATCCCCGGCGATCGCCGTCCTAAAAT 81 11 0 GGCGATCGCC 0.499971 -136 TTCCCAAACTGGCGATCGCCAAGGATCATC 85 110 0 GGCGATCGCC 0.499971 -137 CCTAATATCGGCCCACCGCCTAGGGGATAG 88 14 0 GCCCACCGCC 0.924338 -96 CTGGAGCTTTGGCGATCGCCAGAGGAATGG 88 77 0 GGCGATCGCC 0.499971 -33 GTGATTAAAGGGCGATCGCCATTATAAAAG 96 157 0 GGCGATCGCC 0.499971 -26 TTTTTCAGTTACCCATCCCCCTATCCCCAT 97 74 0 ACCCATCCCC 0.696929 -58 AATGAGCTGCAACGATCGCCAACTGC 101 47 1 AACGATCGCC 0.753717 -16 ACAGGGAGCACTCGATCGCCGAGCCACCCC 102 56 0 CTCGATCGCC 0.801477 -105 ********** Masking position 5 Map Score: 55.7772 Number of sites scoring better than the average of aligned sites = 7219 Number in coding regions = 6577 Number in noncoding regions = 642 Number of orfs with sites within 600 bp upstream = 429 Fraction of orfs with sites within 600 bp upstream = 0.0689046 Motif number 2 CTAAAGCCTTTGTCCCCCAACTATTTTCAC 4 189 1 TGTCCCCCAA 0.782896 -112 TCCATGTTCATCCCCCCAAAGATGGGACTG 5 103 0 TCCCCCCAAA 0.863783 -131 TTTTTTTAGCTTACCCCTGGAGTAATTAGA 6 86 1 TTACCCCTGG 0.780142 -215 TGGAATGATTTGCCCCCCAACGTCTTTGGT 13 25 1 TGCCCCCCAA 0.876049 -140 AGGAAGTTTTTGTCCCCTGGGCTGACTCTG 14 62 1 TGTCCCCTGG 0.939101 -39 AGAAAGTCCGGCTCCCCCAGCTTAATTTTG 15 125 1 GCTCCCCCAG 0.777737 -47 ATTTACTCGCTCTCCCCTAGGGTACTCTGG 19 107 1 TCTCCCCTAG 0.915608 -160 TGCTTTAAAAGCCCCCCTGACCCCCAAATT 20 129 1 GCCCCCCTGA 0.851875 -172 TTCAGTCAGTTTCCCCCTAAATTTGGGGGT 20 148 0 TTCCCCCTAA 0.78611 -153 AGTTTTATTCTGCCCCCTAAATCTCCTCAC 20 204 0 TGCCCCCTAA 0.855632 -97 CTGGTTACTGTTCCCCCAGAGCAAAATCTT 22 53 0 TTCCCCCAGA 0.848234 -208 CTATGGTTTGGCCCCCCCAGTCCCAGGGAA 22 162 1 GCCCCCCCAG 0.872744 -99 AATAAACAAATCCCCCCCGGCGATCGCCTA 25 85 1 TCCCCCCCGG 0.982837 -125 AAAAAATCTCCCCAGAATTAGGGAGG 27 7 1 TCTCCCCAGA 0.879608 -54 CCCATTGGGATCCCCCCTGGGCCATGAGCC 36 100 0 TCCCCCCTGG 0.9796 -163 CGCTTACTTCTCACCCCTAACTCCTGCTGT 38 41 0 TCACCCCTAA 0.640648 -89 CCAATAAAAATCCCCCCAGAATAATCCCAG 41 81 1 TCCCCCCAGA 0.934725 -46 GTTTTTAAACTGTCCCCTAGAATTGTGATC 54 30 0 TGTCCCCTAG 0.872265 -85 GCCCAGCCAGTGTCCCCCAGTCTACTCAAA 56 179 1 TGTCCCCCAG 0.89063 -60 CCTCCCCCCCAGCAACTTAGAC 59 3 1 TCCCCCCCAG 0.962061 -255 TTGCTGTTGTTTACCCCAGGGATGTTTTGA 65 101 1 TTACCCCAGG 0.704975 -22 AAATTTACCTTCACCCCTGGATTGAGCCCA 66 58 0 TCACCCCTGG 0.900905 -136 CCCCAAAAGCTGTCCCCCAAATATTAGCTT 68 28 1 TGTCCCCCAA 0.782896 -66 TCCCACTTAGTGCCCCCAGGGAATTTTTCT 72 15 0 TGCCCCCAGG 0.953168 -76 TCGGTAATTATTTGCCCCGGCCAACGGTTC 74 112 1 TTTGCCCCGG 0.65488 -46 CTCAAGCACGTCTCCCCAGGGTTGTCCTGA 76 50 1 TCTCCCCAGG 0.942854 -50 ACGGCGTATTTCTGCCCCAATTCGCCTAAA 79 27 1 TCTGCCCCAA 0.488063 -109 TAGTTTGGCATCCGCCCTGGTAATGGGTTC 82 36 0 TCCGCCCTGG 0.88877 -265 AGGGGCATAATGTGCCCAGGTTGTTTACTC 86 251 1 TGTGCCCAGG 0.633427 -36 AAATTGAAAAGTCCCCCTGGTTGCACAGAG 87 88 1 GTCCCCCTGG 0.835225 -29 GGGCAAAATTTTCGCCCTGGTTTTTAATAA 88 47 0 TTCGCCCTGG 0.757205 -63 TTCAGGTTACTGACCCCAGATTAATTGAGC 89 120 1 TGACCCCAGA 0.630502 -54 TTTTTGAACTGCCCCCCTGACCCCCCCAAG 94 14 1 GCCCCCCTGA 0.851875 -43 CACCGATAAATTCCCCCCAGCCTTGGGGGG 94 35 0 TTCCCCCCAG 0.908235 -22 CCCATTGCCATTTCCCCTGGGGCGAGGGGT 96 120 1 TTTCCCCTGG 0.905327 -63 AGTAAGTTTCCCCAGAATCGGGATGT 97 7 1 TTTCCCCAGA 0.740371 -125 ********** Masking position 5 Map Score: 43.0711 Number of sites scoring better than the average of aligned sites = 2772 Number in coding regions = 2454 Number in noncoding regions = 318 Number of orfs with sites within 600 bp upstream = 303 Fraction of orfs with sites within 600 bp upstream = 0.0486669 Motif number 3 CCCACAGCCGCCGACACTGGGCGGTTTTTC 4 115 1 CCGACACTGG 0.885488 -186 GGTTTTTCCGTCGGGCCTGGTTTAATCTGT 11 33 0 TCGGGCCTGG 0.929954 -50 CGCGTTATCATCGGCATTGGATTGCAGAAA 15 100 1 TCGGCATTGG 0.809544 -72 TTCTGATTCCCTGGGACTGGGGGGGCCAAA 22 168 0 CTGGGACTGG 0.886511 -93 AATCTTCACCCCGGCCCTGGGCACGGGGTA 25 141 0 CCGGCCCTGG 0.990614 -69 TGTTGCGCTTCTTGCATTGGTTCTTGACTG 33 20 0 CTTGCATTGG 0.526319 -128 GTAAGGTTCCCTGACCCTGGGGGCTGACTC 33 112 0 CTGACCCTGG 0.917671 -36 GGGAACCTTACCTGCCTTGGGTCATGG 33 131 1 CCTGCCTTGG 0.918631 -17 GTCTCATTGACCGGCACTGGCTTGATCTCG 47 51 0 CCGGCACTGG 0.971697 -53 CGAGAATGGGTTGGCCCTGGCTACCTGGGT 48 38 0 TTGGCCCTGG 0.893656 -150 CACTGGAAGCCTAGGCTTGGCAGTATTTAG 48 77 1 CTAGGCTTGG 0.754653 -111 TCAGCGGGAGCCAACATTGGCAAGGATTGA 48 129 0 CCAACATTGG 0.464028 -59 AATCTATTGGCCAGCCTTGGCAATCAAAAA 56 45 1 CCAGCCTTGG 0.909749 -194 TGATCAATGTTTGACCTTGGAACCC 62 6 0 TTGACCTTGG 0.579531 -131 AAAAATTGCGCCGGCCCGGGCCAGCCTGTC 66 124 0 CCGGCCCGGG 0.954675 -70 TAGATGTTGTCCTGGCTTGGGAAACCGATC 75 42 0 CCTGGCTTGG 0.841951 -52 AAAGAGTAGACCGGGCTTGGTTTTACTATT 81 62 0 CCGGGCTTGG 0.948118 -85 TGCTAGCTTCCTGGGCTTGGAATTGCACGC 81 92 1 CTGGGCTTGG 0.955957 -55 GGTTTCTACGCCGGGCCGGGGATTTTAAGG 82 85 1 CCGGGCCGGG 0.916353 -216 TTGCGCTACCCTGAGCCTGGATAAACCCTT 82 248 1 CTGAGCCTGG 0.870028 -53 GTAATACTGTTTGGGCTTGGTTTCGCTTTT 85 190 1 TTGGGCTTGG 0.787523 -57 TAAATTCCCCCCAGCCTTGGGGGGGTCAGG 94 29 0 CCAGCCTTGG 0.909749 -28 TCTTCTTGTTCCGACATTGGGTAAAGTTGC 103 12 0 CCGACATTGG 0.849363 -289 ACTGTTTGTGCCGCCCCTGGGACTGTGGAC 103 41 1 CCGCCCCTGG 0.901267 -260 ********** Masking position 9 Map Score: 26.6642 Number of sites scoring better than the average of aligned sites = 1614 Number in coding regions = 1521 Number in noncoding regions = 93 Number of orfs with sites within 600 bp upstream = 103 Fraction of orfs with sites within 600 bp upstream = 0.0165435 Motif number 4 CGGCGGCTGTGGGCAAAGTTTGGCATTGCCGCC 4 95 0 GGGAAGTTGG 0.88247 -206 CATCTTTGGGGGGATGAACATGGAAAAAAGTGG 5 109 1 GGGTAAATGG 0.909947 -125 TTAGTTTCCCGGCCAAAACTTGGCACTAAATAA 15 48 0 GGCAAATTGG 0.76788 -124 GGAACGGAAAGGGCTAAAATTTGTTCC 18 5 0 GGGTAATTTG 0.819355 -164 CTAGGACAGGGGCCGAAAACTTGTGCGGCCCTC 20 35 1 GGCGAACTTG 0.606655 -266 CTCAATTATGGGGATTAATTTGGCAAGCGGGGC 25 26 1 GGGTAATTGG 0.927898 -184 GCCCAGGGCCGGGGTGAAGATTGCAACAAGCTC 25 149 1 GGGTAAATTG 0.780766 -61 GATCCCAATGGGCTTTAAACTGGTTTTCGGTGG 36 118 1 GGCTAACTGG 0.84197 -145 AAGCGTTGCTGGGAATAACCTGGTTTGCCAAAG 36 192 1 GGGAAACTGG 0.953973 -71 TCAACCCCCTGGGATTATTCTGGGGGGATTTTT 41 86 0 GGGTATCTGG 0.734461 -41 AAAATTACCCGGGTAAATACTGGTCAAATGCCA 43 230 0 GGGAATCTGG 0.734461 -56 GCTAAGATGGGGGCGGAAAATTGCAGAAATCCT 52 188 1 GGGGAAATTG 0.745225 -38 TCATGGCATCGGGGAGAGCATTGATCTTTTCTA 61 94 0 GGGAAGATTG 0.675098 -193 GTGTTCTAAAGGGGAAAATTTGGATGGCAGATG 61 223 1 GGGAAATTGG 0.927898 -64 ATATGGATATGGGGACAGGCTGGCCCGGGCCGG 66 111 1 GGGAAGCTGG 0.923622 -83 ATGGAACAATGGGGGTAACTTGGTTGGGGGTTA 80 83 1 GGGGAATTGG 0.913568 -61 ACTTGGTTGGGGGTTAAACCTTGACCGACTTAG 80 100 1 GGGTAACTTG 0.87959 -44 CCCTGGTAATGGGTTCAAATTGGGTATTGTTCG 82 19 0 GGGTAATTGG 0.927898 -282 GGGGAAAAGATTGGTGAAATTGAG 86 2 1 GGGAAGTTGG 0.88247 -285 TAAAAACCAGGGCGAAAATTTTGCCCCCATTCC 88 51 1 GGCAAATTTG 0.538307 -59 AATTGGGAAAAAACTGGAGCTTTGGCG 88 93 0 GGGAAACTGG 0.953973 -17 TTGCCTCTCTGGGGTTTACCTGGTAATGTCCCT 90 163 0 GGGTTACTGG 0.527609 -85 TCACAAAAGCGGCTTCAACATTGTGCGATCCTA 93 61 0 GGCTAAATTG 0.477935 -61 TTAAACCAACGGGAGCAGTATTGATTGGAGCGA 96 80 1 GGGGAGATTG 0.630533 -103 AAAGTAGGGTGAAGAATGGAAAATGGTGA 99 37 0 GGGGAGATGG 0.82883 -19 *** * ** **** Masking position 11 Map Score: 23.6852 Number of sites scoring better than the average of aligned sites = 754 Number in coding regions = 655 Number in noncoding regions = 99 Number of orfs with sites within 600 bp upstream = 120 Fraction of orfs with sites within 600 bp upstream = 0.019274 Motif number 5 CAAGAAATAGGGGATGGGCAAATATCTTCCAC 2 28 1 GGATGGGCAA 0.929297 -56 CAATCTCTCAAGATTGGGGTATTTAGAATCTG 3 206 0 AGTTGGGGAT 0.711998 -95 AGCTCCGGCAAGGTTGGGGGATTTGGACTTAC 4 222 1 AGTTGGGGAT 0.711998 -79 GGAAAAAAGTGGAATAGGGCAAGTCCACTGGT 5 130 1 GGATAGGGAA 0.870988 -104 AGAAAAGGGGAAAATTCCCAAT 15 160 0 AGAAAGGGAA 0.758814 -12 AGCCTGGGGCAGTATGGGGCAACTCAGGCTAA 17 57 1 AGATGGGGAA 0.947511 -55 GTACGGGAACGGAAAGGGCTAAAATTTGTTCC 18 11 0 GGAAGGGCAA 0.929297 -158 CTCTGGCTTTGGGAAAGGGTAAATGGGGTTAT 19 131 1 GGAAAGGGAA 0.870988 -136 TTAACGCAATGGTGTGGGGCCATAGAATGAAG 19 215 1 GGGTGGGGCA 0.755886 -52 CCCCTGTCCTAGAATGGGGAAATTAGCAGAGC 20 15 0 AGATGGGGAA 0.947511 -286 CCATTCTAGCGGCTTGGGGGATAACCGTTAGC 22 203 0 GGTTGGGGAT 0.841394 -58 CCCGGCCCTGGGCACGGGGTATTTTATTGGTA 25 130 0 GGACGGGGAT 0.781046 -80 CAATGACTCCAGCAAGGGGGAAGAAAACCT 34 13 1 AGAAGGGGAA 0.947511 -20 TACCTGGGTTAGGATGGGGAAAACCGTCTTTA 48 15 0 AGATGGGGAA 0.947511 -173 GGAAAATTTCAGTAAGGGCAAATCTAAAGTGC 51 95 0 AGAAGGGCAA 0.859652 -132 TTATACTGGAGGTGAGGGCGAATCCCCAGGCA 52 31 1 GGGAGGGCAA 0.788858 -195 TTCTATGGAAAGCACGGGGAAATATTGACTAC 57 66 0 AGACGGGGAA 0.828946 -193 AAAGCACTCCAGAATAGGGAAAAACCCACAGA 58 70 0 AGATAGGGAA 0.758814 -149 AAAAATCTATGGCAAGGGCAAAAACAATCGTT 77 11 1 GGAAGGGCAA 0.929297 -171 CGGTCTGGGTTAGGGCCCAGTCGTGCAAA 77 163 0 GGTAGGGCCA 0.596064 -19 GGAAAAGGAAGGGGAATTGCATCAAGA 83 6 1 AGAAGGGGAT 0.860963 -156 CGGCCGGCCGAGAAAGGGGCATAATGTGCCCA 86 237 1 AGAAGGGGAT 0.860963 -50 GATCGCCAGAGGAATGGGGGCAAAATTTTCGC 88 62 0 GGATGGGGCA 0.915918 -48 CAAAACTGCGGGCATAGGGACATTACCAGGTA 90 148 1 GGATAGGGCA 0.654998 -100 TTTCCCCTGGGGCGAGGGGTAACTCACCTTTT 96 130 1 GGGAGGGGAA 0.916743 -53 AGGTTCATGGGGATAGGGGGATGGGTAACTGA 97 68 1 GGTAGGGGAT 0.841394 -64 TTCTTGGTCTGGTTAGGGCAAAAAGTTAACAA 102 136 0 GGTAGGGCAA 0.839933 -25 TTCACGGAAAGGTTTAGGGTAAACTATATCCT 103 236 0 GGTTAGGGAA 0.729387 -65 ** ****** ** Masking position 7 Map Score: 29.212 Number of sites scoring better than the average of aligned sites = 1467 Number in coding regions = 1283 Number in noncoding regions = 184 Number of orfs with sites within 600 bp upstream = 196 Fraction of orfs with sites within 600 bp upstream = 0.0314809 Motif number 6 GCTGCCACCGTTGTCGCCGTGGCTGACGGCCA 5 181 1 TTCGCCGTGG 0.64827 -53 TCCGGCAACATTGACCCCGTTGTAACAGCCAA 20 66 1 TTCCCCGTTG 0.901473 -235 AGATTAATTCCTCCCCCCATTGACTTGGACCC 21 23 0 CTCCCCATTG 0.959507 -55 GTTGGATAGGTTTAACCCATGGTTACTGCCAT 32 168 1 TTACCCATGG 0.733482 -90 TAACCCATGGTTACTGCCATGGTCAAAGCTAG 32 180 1 TTTGCCATGG 0.582475 -78 TTCTTGCCATTGCAACTATCAA 41 115 0 TTTGCCATTG 0.562396 -12 AGTTGCTCCTCTGATCCCAATGAGTTGATAGC 43 46 0 CTTCCCAATG 0.693648 -240 ACATCGAGAATTAATCCCATGGTATCCACAAG 46 219 1 TTTCCCATGG 0.882596 -82 TTTATTTATGTCTTCCCCATTGTTCTGA 53 70 1 TCCCCCATTG 0.686995 -18 AAGATCAATGCTCTCCCCGATGCCATGAAAAT 61 99 1 CTCCCCGATG 0.749459 -188 TTTGCTGTTGTTTACCCCAGGGATGTTTTGAT 65 100 1 TTCCCCAGGG 0.855421 -23 CTGGGAAACCCTAACCCCATGGCCCCATCATA 74 28 1 CTCCCCATGG 0.962577 -130 CATGGCATTCCTAGCCCCAAGGGTGATAGGCT 80 54 0 CTCCCCAAGG 0.885675 -90 CCCAACCAAGTTACCCCCATTGTTCCATGGCA 80 79 0 TTCCCCATTG 0.956196 -65 TGACCAACCATTTCTCCCATTGAATAGTAAAA 81 40 1 TTTCCCATTG 0.873824 -107 AACCCATTCTTTGTCCCCATTGTCGCCGCACC 85 58 0 TTCCCCATTG 0.956196 -189 CCAATCAATACTGCTCCCGTTGGTTTAATCAT 96 76 0 CTTCCCGTTG 0.759094 -107 TGAGTTACCCCTCGCCCCAGGGGAAATGGCAA 96 124 0 CTCCCCAGGG 0.865276 -59 AGCTCATTGCTTGGCCCCATTGTGCCAGAGAA 101 23 0 TTCCCCATTG 0.956196 -40 AGCAACTTTACCCAATGTCGGAACAAG 103 6 1 CTACCCAATG 0.453222 -295 ** ******** Masking position 7 Map Score: 15.7102 Number of sites scoring better than the average of aligned sites = 1146 Number in coding regions = 1013 Number in noncoding regions = 133 Number of orfs with sites within 600 bp upstream = 157 Fraction of orfs with sites within 600 bp upstream = 0.0252168 Motif number 7 CTTGAGAGATTGAGAGAAAAATTAACATTGTTA 3 226 1 TGAGAAAATT 0.556262 -75 TGTCGGCGGCTGTGGGCAAAGTTTGGCATTGCC 4 98 0 TGTGAAAGTT 0.970409 -203 GAGACGATTTTGTCGGGAAAGTTCTCGCTTTAT 6 15 1 TGTGAAAGTT 0.970409 -286 CGCGAGGGCCTGTCGGCAAAGTTTTAGTTTCCC 15 71 0 TGTGAAAGTT 0.970409 -101 TGTTGAAGTTTGTAGGTAATGTTGGGTTTACAA 19 21 1 TGTGAATGTT 0.806461 -246 CCTGAGAAGGTGTTTGGAAAGTTTTATTCTGCC 20 220 0 TGTGAAAGTT 0.970409 -81 AATTCCTTTTTGTTAGTAAAATTT 49 2 0 TGTGAAAATT 0.834774 -99 AGCCTTTGTTTGTTAGAATAGTTCCCCATTGAT 49 47 0 TGTGATAGTT 0.806461 -54 TAGGCCGAATTGAGAGGAAAGTTC 80 130 1 TGAGAAAGTT 0.890555 -14 GCCTATGACGTGTTGGCAAAGTTACATAAAAAC 82 114 1 TGTGAAAGTT 0.970409 -187 TGTAAGAAAGTGTTTGAAAAGTT 100 288 1 TGTGAAAGTT 0.970409 -13 *** * ****** Masking position 8 Map Score: 10.6187 Number of sites scoring better than the average of aligned sites = 86 Number in coding regions = 19 Number in noncoding regions = 67 Number of orfs with sites within 600 bp upstream = 46 Fraction of orfs with sites within 600 bp upstream = 0.00738837 Motif number 8 TTCTCTCGGATTTTCGGCCTGCAATTTACTC 19 84 1 TTTTCGGCCG 0.861464 -183 AATTTCCCCATTCTAGGACAGGGGCCGAAAA 20 23 1 TTCTAGGACG 0.916522 -278 AAAATTAGGATTCTTGCACAGTACCGCAAAA 27 39 1 TTCTTGCACG 0.68165 -22 ATCGGAGTGGTTCTAGGACAGCGTTCACATC 35 90 0 TTCTAGGACG 0.916522 -211 TTTGGCCAGGTTCTAGGCCCGATCGCCACCG 36 145 0 TTCTAGGCCG 0.976933 -118 CGTAAATATGTTTTAGGTCTGATGTCGCAAA 43 99 0 TTTTAGGTCG 0.631193 -187 CATAGCCAGGTTCTTGGCCAGT 46 289 1 TTCTTGGCCG 0.931493 -12 GCTGGAAAATTTCTAGCCCAGCCAGTGTCCC 56 164 1 TTCTAGCCCG 0.962585 -75 TTGAAGATATTTCTAGCCGGGA 58 2 0 TTCTAGCCGG 0.66838 -217 AAAATATAGTTTTTAGCCCTGCTACCATTTT 63 98 1 TTTTAGCCCG 0.882111 -32 ATTTTAGGACGGCGATCGCCGG 81 2 1 TTTTAGGACG 0.761519 -145 CGCCTGAGGTTTCTACGCCGGGCCGGGGATT 82 78 1 TTCTACGCCG 0.867311 -223 AGGAATTAAGTTCTACCCCCGTCCACGTCCC 83 103 1 TTCTACCCCG 0.798817 -59 TTATGCCCCTTTCTCGGCCGGCCGCTCAAAC 86 230 0 TTCTCGGCCG 0.955318 -57 GGGGGCAAAATTTTCGCCCTGGTTTTTAATA 88 48 0 TTTTCGCCCG 0.79068 -62 GGTTTCTTGGTCTGGTTAGGGCAA 102 147 0 TTCTTGGTCG 0.653882 -14 ********* * Masking position 4 Map Score: 12.4379 Number of sites scoring better than the average of aligned sites = 203 Number in coding regions = 175 Number in noncoding regions = 28 Number of orfs with sites within 600 bp upstream = 35 Fraction of orfs with sites within 600 bp upstream = 0.00562159 Motif number 9 AGGAGGTGAAGGAGATTTTCCCTCGCCTGCCCTTAGTAATAA 6 177 1 GGTCCCCGCC 0.827935 -124 TAGCTAAGCTTTTAACCCTCCCTGTCCCAACCTATCGAATAG 12 152 1 TTTCCCCACC 0.985173 -44 TGTCGGCAAAGTTTTAGTTTCCCGGCCAAAACTTGGCACTAA 15 52 0 GTTTCCCAAC 0.547871 -120 GGAACAAATTTTAGCCCTTTCCGTTCCCGTACCAGGGAAAAT 18 11 1 TTTTCCCGAC 0.622148 -158 CCGGCCTGTATTTTAGCTTCCCATGGCTAGCCAATGGCGATC 19 163 1 TTTCCCCACC 0.985173 -104 GATGGGAGGGTTGTTCATTCCCCAAACAATCCGCCAAATCCT 36 11 0 TTTCCCCACC 0.985173 -252 CAGCTAAAGACGGTTTTCCCCATCCTAACCCAGGTAGCCA 48 9 1 GATCCCCACC 0.798093 -179 TAGTCATCCATTAACGGGTTCCTCCTCAATCCTTGCCAATGT 48 104 1 TTTTCCCACC 0.923348 -84 CCAGGACTGTTTCTCCAGTCCCTAATCTGCACTTTAGATTTG 51 67 1 TTTCCCCGAC 0.900814 -160 TTTAACCAAATTCGGCCTTCCCGTGCCTATCCACCGCC 51 199 1 TTTCCCCACC 0.985173 -28 AATTACCGGATTTTTGATTGCCAAGGCTGGCCAATAGATTAG 56 43 0 TTTGCCCGCC 0.853015 -196 TGGTGGTGGCTTTTGCCTTCCCTAACCGACCCATTGCTCCCT 60 17 0 TTTCCCCACC 0.985173 -141 TTTTTAGGATCCAGCTTCAATCCTATTTCGATG 97 109 0 TTTCCACACC 0.877028 -23 CCCTGGGACTGTGGACGCTCCCCCTCCAAGCCAATCGGCAGG 103 55 1 GTTCCCCACC 0.975705 -246 AGGCATTTTGTTTTTGCTTCCACTATCCGCCCGACAGCAGAA 103 175 1 TTTCCACGCC 0.854178 -126 ** **** * * ** Masking position 9 Map Score: 11.9405 Number of sites scoring better than the average of aligned sites = 157 Number in coding regions = 133 Number in noncoding regions = 24 Number of orfs with sites within 600 bp upstream = 34 Fraction of orfs with sites within 600 bp upstream = 0.00546097 Motif number 10 TGGGGCTCTGCTAATTTCCC 20 1 1 TGGGGCTCTG 0.858583 -300 ATTTGGCAAGCGGGGCATTGGAAATTTCAA 25 43 1 CGGGGCATTG 0.901019 -167 CACCCCGGCCCTGGGCACGGGGTATTTTAT 25 135 0 CTGGGCACGG 0.886022 -75 GGGATCCCCCCTGGGCCATGAGCCCAGAAA 36 94 0 CTGGGCCATG 0.829811 -169 CGGGTAGTGGTGGGGCATTGGTCAACAAGG 41 27 1 TGGGGCATTG 0.88512 -100 TTACCCTGGTCTGGGCCTTGTTGACCAATG 41 42 0 CTGGGCCTTG 0.849459 -85 CAAAATCTGCCTGGGCACTGCTTCAAAACC 56 98 0 CTGGGCACTG 0.895155 -141 CAAGTTGAGATGGGGCATAGAGATTTTTGA 60 73 1 TGGGGCATAG 0.814623 -85 GGATAAAATTTTGGGCACGGAAGATCCCAC 64 195 0 TTGGGCACGG 0.869394 -106 GGACAGCTTTTGGGGCACTGGAGGGTTTAA 68 13 0 TGGGGCACTG 0.914124 -81 AAAAAAAATTTGGGGCTAAGAACCATTCTA 69 26 1 TGGGGCTAAG 0.683895 -49 TAAACTATGATGGGGCCATGGGGTTAGGGT 74 35 0 TGGGGCCATG 0.858138 -123 TTTGCAAATACTGGGCAAAGAGCTCAGGAC 76 73 0 CTGGGCAAAG 0.754667 -27 CTATCACCCTTGGGGCTAGGAATGCCATGG 80 57 1 TGGGGCTAGG 0.775289 -87 TGCTAGCTTCCTGGGCTTGGAATTGCACGC 81 92 1 CTGGGCTTGG 0.764533 -55 ATTAGTTCGCTTGGGCCCAGATAAAATCCC 82 219 0 TTGGGCCCAG 0.759591 -82 GTAATACTGTTTGGGCTTGGTTTCGCTTTT 85 190 1 TTGGGCTTGG 0.733211 -57 TCTGGCACAATGGGGCCAAGCAATGAGCTG 101 26 1 TGGGGCCAAG 0.775269 -37 GTGAATTGCTCTGGGCATTGTTGACGTGTC 103 263 1 CTGGGCATTG 0.862233 -38 ********** Masking position 5 Map Score: 17.6637 Number of sites scoring better than the average of aligned sites = 946 Number in coding regions = 871 Number in noncoding regions = 75 Number of orfs with sites within 600 bp upstream = 84 Fraction of orfs with sites within 600 bp upstream = 0.0134918 Motif number 11 CAATGCAGCCGCATTACCATCGGCGTATAGTTT 1 30 0 GCTACATCGG 0.642509 -49 CCTCCCGTCAGCTTTTCTGGCGGCAATGCCAAA 4 77 1 GCTTCGGCGG 0.712106 -224 TCCAAATCCCCCAACCTTGCCGGAGCTTTAGTG 4 216 0 CCACTGCCGG 0.730392 -85 TTGGAGATCGCCATCCTGGTCGGGCTAAACCCG 9 26 1 CCTCTGTCGG 0.944878 -58 ACAGGCCCTCGCGTTATCATCGGCATTGGATTG 15 91 1 GCTATATCGG 0.634069 -81 ATCTCCGTAGCCCATTCTAGCGGCTTGGGGGAT 22 213 0 CCATCAGCGG 0.70883 -48 AACTATTGGGGCGACTTAATCGGCGTTGAATGC 32 113 1 GCATTATCGG 0.632837 -145 TCTAATTCAACCAAAATGATCGGAGTGGTTCTA 35 106 0 CCAATATCGG 0.773292 -195 GAACAACCCTCCCATCTTATCGGTAGTGGGCCA 36 37 1 CCACTATCGG 0.894821 -226 TAGAATCAGACCCTGATGGTCGGAGCGATGGGC 46 173 1 CCTATGTCGG 0.872236 -128 CCACACACGCCCTATCCTGTCGGC 57 2 0 CCACCGTCGG 0.945942 -257 CTCTAACTTCCCTATTTTATCGGTCATTTCT 67 42 1 CCATTATCGG 0.772609 -21 GGGCTAAGAACCATTCTAGGCGGTGCTATACCA 69 38 1 CCTCTGGCGG 0.921985 -37 TGGTGGAAGTGCGAATTTGTCGGTAATTATTTG 74 93 1 GCATTGTCGG 0.776095 -65 CAAAATGCAAGCTTGCCCGGCGGGCATGGTAGG 77 95 1 GCTCCGGCGG 0.861584 -87 GCATTTAATACCATTACTGGCGGTGCGGCGACA 85 37 1 CCTACGGCGG 0.829673 -210 AGGATCATCACCTTCCTCGTCGGATTCGGAACC 85 86 0 CCTCTGTCGG 0.944993 -161 CGCTCCCCCTCCAAGCCAATCGGCAGGGACGGA 103 70 1 CCACCATCGG 0.899027 -231 ** * ** ***** Masking position 11 Map Score: 10.2901 Number of sites scoring better than the average of aligned sites = 492 Number in coding regions = 454 Number in noncoding regions = 38 Number of orfs with sites within 600 bp upstream = 43 Fraction of orfs with sites within 600 bp upstream = 0.00690652 Motif number 12 CATCCTGGTCGGGCTAAACCCGTTAAGCTA 9 37 1 GGGCTAAACC 0.643029 -47 AAGCCAGGCAGAGTCAGCCCAGGGGACAAA 14 70 0 GAGTCAGCCC 0.870054 -31 GGGACTGGGGGGGCCAAACCATAGGGAGTT 22 156 0 GGGCCAAACC 0.899666 -105 CAGTAACCATGGGTTAAACCTATCCAACTA 32 166 0 GGGTTAAACC 0.530792 -92 CAATTGATCCGAGTCAGCCCCCAGGGTCAG 33 102 1 GAGTCAGCCC 0.870054 -46 TATCGGTAGTGGGCCAACCCGGAAGAAGAA 36 54 1 GGGCCAACCC 0.861687 -209 TTTGACAGAAGATCCAACCCGATGGAGATG 43 137 0 GATCCAACCC 0.521817 -149 CAGGTAGCCAGGGCCAACCCATTCTCGTTA 48 41 1 GGGCCAACCC 0.861687 -147 GTCCCTCTTTGAGCTAGCCCAGCAGTTTTA 57 172 0 GAGCTAGCCC 0.753124 -87 GCGCCGGCCCGGGCCAGCCTGTCCCCATAT 66 117 0 GGGCCAGCCT 0.652774 -77 ACTTGGTTGGGGGTTAAACCTTGACCGACT 80 100 1 GGGTTAAACC 0.530792 -44 TATAAAAGGTGAGTTACCCCTCGCCCCAGG 96 135 0 GAGTTACCCC 0.628973 -48 CTCGATCGCCGAGCCACCCCCTACTGAATC 102 46 0 GAGCCACCCC 0.88519 -115 GACTCCTGATGGGTTAACCCTAAGTCAGAC 103 136 1 GGGTTAACCC 0.49443 -165 ********** Masking position 6 Map Score: 10.8054 Number of sites scoring better than the average of aligned sites = 551 Number in coding regions = 483 Number in noncoding regions = 68 Number of orfs with sites within 600 bp upstream = 75 Fraction of orfs with sites within 600 bp upstream = 0.0120463 Motif number 13 AAAAACAACACCAGTGGACTTGCCCTATTCCACTTTT 5 134 0 CCAGACTTCA 0.634721 -100 TCCGGCTCCCCCAGCTTAATTTTGTTGTTATTGGGAA 15 131 1 CCAGAATTGG 0.921885 -41 CGTTCCCGTACCAGGGAAAATAACCTGTATGATGAAA 18 32 1 CCAGAAATCG 0.762197 -137 AACTCCGCCTCCAGCTCAATTATGGGGATTAATTTGG 25 12 1 CCAGAATTGG 0.921868 -198 GGCCATGAGCCCAGAAAAATTGGCCAATTCTTCTTCC 36 74 0 CCAGAATTCA 0.935879 -189 CCAGTATTTACCCGGGTAATTTTGACACGTTGTTGAT 43 240 1 CCCGAATTGA 0.678953 -46 GCTGAACCAGCCAGCAAAATTAAGTAATTATTAAAAC 48 154 1 CCAGAATTGA 0.952249 -34 GTTAGCTTTTCCAGTTTAATTCTGATA 51 1 0 CCAGAATTGA 0.952253 -226 GCCCTCACCTCCAGTATAAATTCCTGACTGCCGATCG 52 13 0 CCAGAAATCA 0.844142 -213 TGATAATAGTCAGAATAAATAGGGGAAGGTATCGCT 58 193 0 TCAGAAATGA 0.629262 -26 AATAAACATATCAGGCAAGTTGAGATGGGGCATAGAG 60 58 1 TCAGAGTTGG 0.372246 -100 GGTTGCTTAGTCAGCAGAAATTCGACAAAGTGTTCTA 61 136 0 TCAGAAATGA 0.629262 -151 TGTCTGAAATTCAGTTTAATTCTCTAAAAGTTGAACT 63 54 1 TCAGAATTCA 0.769992 -76 AGTCAGAAAAATTCCCTGGGGGCACTAAG 72 3 1 TCAGAATTCG 0.555771 -88 AAACCGATCCCCAGCAGAGTTTTGCAAAAAAGTTATC 75 14 0 CCAGAGTTGA 0.813753 -80 TCGCTTGGGCCCAGATAAAATCCCATAGGAGACTGAA 82 206 0 CCAGAAATCA 0.84415 -95 TTGGCGATCGCCAGAGGAATGGGGGCAAAATTTTCGC 88 62 0 CCAGAATGGA 0.678953 -48 GTTACTGACCCCAGATTAATTGAGCTAGATTTAAGCA 89 125 1 CCAGAATTGA 0.952253 -49 TCAACAATGCCCAGAGCAATTCACGGAAAGGTTTAGG 103 250 0 CCAGAATTCA 0.935489 -51 **** **** * * Masking position 8 Map Score: 12.067 Number of sites scoring better than the average of aligned sites = 296 Number in coding regions = 262 Number in noncoding regions = 34 Number of orfs with sites within 600 bp upstream = 41 Fraction of orfs with sites within 600 bp upstream = 0.00658529 Motif number 14 TGTCGCCGTGGCTGACGGCCAACTATTTTAACCG 5 192 1 GTGACGCCAT 0.870639 -42 TTTAACCCATGGTTACTGCCATGGTCAAAGCTAG 32 178 1 GTTACTCCAG 0.644224 -80 ATTAGGCTGTGCTGACGTCCAAAGGGTCAGATTA 40 53 0 GTGACGCCAG 0.989451 -50 TGGTCTGGGCCTTGTTGACCAATGCCCCACCACT 41 32 0 CTGTTGCCAG 0.639686 -95 CGCCATAATAGTTGTCTCCCAAGGAGAACTGTTT 43 166 0 GTGTCTCCAG 0.82249 -120 AATTCTCGATGTTGTCGTCCATGGTGCCCATCGC 46 197 0 GTGTCGCCAG 0.970887 -104 AGGATTGTACGTTTACGACCATTGACCTTTTTTC 46 249 1 GTTACGCCAG 0.928737 -52 TACGGGGATTGTTGACGACCATGGCCTTGCCGTC 52 108 0 GTGACGCCAG 0.989451 -118 TTAAAAGGTCGATGAAGACCAGAGAATCAAAGTA 59 205 0 GTGAAGCCAG 0.901918 -53 ATGCTTGATGGCCACGGAGCCAGGGAT 84 13 0 CTGATGCCAG 0.833153 -17 AGCCGATTCTGTTGATGGCCGAAGGGGT 92 45 1 GTGATGCCGG 0.799546 -18 GTTTAATCATGGTGACGGCCATAGCTAGTCCAAA 96 52 0 GTGACGCCAG 0.989451 -131 * ***** *** * Masking position 3 Map Score: 7.66516 Number of sites scoring better than the average of aligned sites = 136 Number in coding regions = 127 Number in noncoding regions = 9 Number of orfs with sites within 600 bp upstream = 12 Fraction of orfs with sites within 600 bp upstream = 0.0019274 Motif number 15 AACAAAAATGTTTTAACAATGTTAATTTTTCTC 3 239 0 TTTTACATTT 0.816332 -62 CCTCCTTTTTTTTTGACAATTTTTGCCAGTGTG 6 150 0 TTTTACATTT 0.816332 -151 CTAATGCTAATTTTAACGAAATTATTTTGACCA 12 82 0 TTTTACAATT 0.905667 -114 TTGAACTTAAATTTGACTAAATTTAACTAGCTT 32 205 0 ATTTACAATT 0.800539 -53 AATCGGGCTCTTTTCGCGAAATTGTATTATTTT 35 11 0 TTTTGCAATT 0.815436 -290 GGTTTGTCCTTTTTAACCAAATTCGGCCTTCCC 51 188 1 TTTTACAATT 0.905667 -39 GTATGGCACAATTTGACGAACTTCCCGTTGGCA 58 117 0 ATTTACAATT 0.800539 -102 GCAAGCTTGCATTTTGCAAAATTCCTCACTAGA 77 78 0 ATTTGCAATT 0.648749 -104 TTATCAACGAATTTCACTAACTTTGCACGACTG 77 142 1 ATTTACAATT 0.800539 -40 AGACTCTAACTTTTGGCAATCTTCTCTTTACCT 86 75 0 TTTTGCATTT 0.671632 -212 TTACACTTTGTTTTAACTAGATTAATAATCCAT 89 56 1 TTTTACAGTT 0.666913 -118 TATATGGAGCTTTTAACTAAGTTTTTAATGTCG 90 23 0 TTTTACAATT 0.905667 -225 CACCATTTAATTTTTACAAATTTTTACGAAATC 91 12 0 TTTTACAATT 0.905667 -119 AATTTTATTCTTTTCACCATTTTCCATTCTTCA 99 24 1 TTTTACATTT 0.816332 -32 **** ** ** ** Masking position 9 Map Score: 6.09842 Number of sites scoring better than the average of aligned sites = 57 Number in coding regions = 38 Number in noncoding regions = 19 Number of orfs with sites within 600 bp upstream = 28 Fraction of orfs with sites within 600 bp upstream = 0.00449727