AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i02010_synecho_reg_100.orf -o02010_synecho_100.ace -a/home/amcguire/alignace/lib/ORF_synecho.txt -z/skink1/amcguire/genomes/synecho.fna -g0.48 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.48 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: slr1319 165 fecB; iron(III) dicitrate transport system permease protein FecB. slr2005 178 hypothetical protein. Input sequences: #1 slr1316 96 fecC; iron(III) dicitrate transport system permease protein FecC. #2 slr1317 261 fecD; iron(III) dicitrate transport system permease protein FecD. #3 slr1491 173 fecB; iron(III) dicitrate-binding periplasmic protein. #4 slr1493 62 rfbD; hypothetical protein. #5 slr1494 217 rfbD; ABC transporter. #6 sll1041 46 ABC transporter. #7 sll1040 229 hypothetical protein. #8 slr1295 81 sufA; iron transport protein. #9 ssl2384 208 hypothetical protein. #10 slr1046 300 pleD; hypothetical protein. #11 sll1002 162 ycf22; hypothetical protein. #12 sll1001 22 ABC transporter. #13 ssl1918 231 hypothetical protein. #14 slr2045 300 putative manganese transport permease protein. [SP:YK45_SYNY3] #15 sll1927 77 oppF; oligopeptide transport ATP-binding protein OppF. #16 sll1926 91 hypothetical protein. #17 sll1082 56 putative taurine transport ATP-binding protein. [SP:NRTD_SYNY3] #18 sll1081 102 putative taurine transport permease protein. #19 sll1080 53 putative taurine transport substrate-binding protein. #20 sll1079 60 hypB; hydrogenase expression/formation protein HypB. #21 sll1078 75 hypothetical protein. #22 sll1077 300 speB; agmatine ureohydrolase. [EC:3.5.3.11] #23 slr1200 97 livM; high-affinity branched-chain amino acid transport permease #24 slr1201 115 hypothetical protein. #25 slr1202 109 malF; putative maltose transport permease protein. #26 sll1453 54 nrtD; nitrate transport protein NrtD. #27 sll1452 74 nrtC; nitrate transport ATP-binding protein nrtC. [SP:NRTC_SYNY3] #28 sll1451 85 nrtB; nitrate transport permease protein nrtB. [SP:NRTB_SYNY3] #29 sll1450 135 nrtA; nitrate transport protein nrtA. [SP:NRTA_SYNY3] #30 slr1224 106 malK; putative maltose transport ATP-binding protein. #31 sll1270 300 glnP; glutamine transport permease protein. #32 sll1768 130 appB; oligopeptide transport system permease protein. #33 slr1881 235 livF; high-affinity branched-chain amino acid transport ATP-binding #34 sll1698 276 rpoD; hypothetical protein. #35 slr1735 248 glnQ; glutamine transport ATP-binding protein. #36 slr1740 47 phr; extracellular solute-binding protein family. #37 tRNA-Asp 151 tRNA-Asp. #38 slr1247 145 pstS; periplasmic phosphate binding protein. #39 slr1249 53 pstA; phosphate transport system permease protein PstA. #40 slr1250 180 pstB; phosphate transport ATP-binding protein PstB. #41 sll1601 96 hypothetical protein. #42 slr1724 167 hypothetical protein. #43 sll1599 98 mntA; manganese transport system ATP-binding protein mntA. #44 sll1598 143 mntC; Mn transporter MntC. #45 sll0237 74 putative iron binding periplasmic protein. #46 ssl0438 193 hypothetical protein. #47 slr1344 94 hypothetical protein. #48 sll1251 167 hypothetical protein. #49 sll1878 145 ABC transporter. #50 sll1102 165 hypothetical protein. #51 slr0950 62 hypothetical protein. #52 sll0909 216 hypothetical protein. #53 sll0146 81 high-affinity branched-chain amino acid transport protein BraE. #54 sll0144 140 pyrH; uridylate kinase (UK) (uridine monophosphate kinase) (UMP #55 slr0324 47 appC; oligopeptide transport system permease protein. #56 slr0325 90 hypothetical protein. #57 sll0301 260 hypothetical protein. #58 slr0327 49 hitB; iron utilization protein. #59 slr0328 88 putative low molecular weight protein-tyrosine-phosphatase. #60 sll0297 188 hypothetical protein. #61 sll0764 182 livG; high-affinity branched-chain amino acid transport ATP-binding #62 sll0751 135 ycf22; hypothetical protein. #63 sll0312 166 appB; oligopeptide transport system permease protein. #64 slr0468 164 hypothetical protein. [EC:3.1.21.3] #65 sll0684 114 pstB; phosphate transport ATP-binding protein PstB. #66 sll0683 25 pstB; phosphate transport ATP-binding protein PstB. #67 sll0682 185 pstA; phosphate transport system permease protein PstA. #68 sll0681 81 pstC; phosphate transport system permease protein PstC. #69 sll0680 300 pstS; phosphate-binding periplasmic protein precursor (PBP). #70 sll0381 300 hypothetical protein. #71 sll0374 77 braG; high-affinity branched-chain amino acid transport ATP-binding #72 sll0373 125 proA; probable gamma-glutamyl phosphate reductase (GPR) (glutamate- #73 sll0832 300 hypothetical protein. #74 sll0739 46 modBC; molybdate transport permease/ATP-binding protein. #75 sll0738 21 modA; molybdate-binding periplasmic protein. #76 sll0737 300 hypothetical protein. #77 slr0040 62 nrtA; nitrate transport 45kD protein. #78 slr0041 110 nrtB; nitrate transport permease protein. #79 slr0043 72 nrtC; nitrate transport ATP-binding protein. #80 slr0044 283 nrtD; nitrate transport protein NrtD. #81 sll0513 188 hypothetical protein. #82 slr1452 36 sbpA; sulfate-binding protein precursor. [SP:SUBI_SYNY3] #83 slr1454 161 cysW; sulfate transport system permease protein cysW. #84 slr1455 189 cysA; sulfate transport ATP-binding protein cysA. [SP:CYSA_SYNY3] #85 sll0735 165 hypothetical protein. Motif number 1 AAGCGCAAGCGGGGAATGCCATACTTCCTC 3 113 1 GGGGAATGCC 0.935808 -61 CGACGAAATTGGCGATCGGGCTAAATAAGA 5 62 0 GGCGATCGGG 0.910006 -156 GAATTACCTATGGGATCGCCATGGCAAACC 5 95 0 TGGGATCGCC 0.76097 -123 TCTCTGGGTTGGCGATTGGGGTGAAAATCG 7 121 0 GGCGATTGGG 0.844578 -109 TTGCCTCCTTGGCGATCGCCAAGGAGGGG 10 282 1 GGCGATCGCC 0.499998 -19 AATTCATAGCGGGGCTTGCCATGGAGG 14 8 0 GGGGCTTGCC 0.888067 -293 ACAAACCTTTGGCGATCGCCGCATGGACTC 16 55 1 GGCGATCGCC 0.499998 -37 TGAAATAATCGGCGATCGCCTTTGGGAGAG 21 50 1 GGCGATCGCC 0.499998 -26 ACTTTAGTTTGGCGATCGCCGATAAAAAGT 22 43 1 GGCGATCGCC 0.499998 -258 CTGGTGATGTGGGGAATGGCTGGTCCGAGA 22 142 1 GGGGAATGGC 0.822329 -159 TAATTTTTCAGGGGATTGCC 32 1 0 GGGGATTGCC 0.834493 -130 AGTTTCCCAAGGCGATCGCCGTGGGGGTCT 33 37 1 GGCGATCGCC 0.499998 -199 GGTTACCAGGGGCGATCGCCGTGGTGGGGG 34 213 1 GGCGATCGCC 0.499998 -64 TCCCTAGGCTGGCGATCGCCTTTCGCTGGC 35 66 1 GGCGATCGCC 0.499998 -183 CAGTTGTGCCGGGGATTGTCAACCCCTGAC 37 105 0 GGGGATTGTC 0.813093 -47 GGATAAATCCGGCGATCGCCCCAGGAGTTT 48 37 1 GGCGATCGCC 0.499998 -131 GTATTTTTAGGGCGATCGCCGCTAAATCCG 54 20 1 GGCGATCGCC 0.499998 -121 ACAACGCTAAGGCGATCGCCAGGGAACTTT 60 87 1 GGCGATCGCC 0.499998 -102 ATTGCTCCCTGGCGATCGGCATCTGCACCA 63 71 1 GGCGATCGGC 0.55025 -96 CGAGTGGGGAGGCGATCGCCATTGATCTTC 68 27 1 GGCGATCGCC 0.499998 -55 GGCAAGTATTGGGGATTCCCAGGAAGAAAA 69 173 1 GGGGATTCCC 0.753628 -128 CTTGAACCTGGGGGAATGGCT 72 2 0 GGGGAATGGC 0.822329 -124 CTAACATCTAGGCGATCGCCGCGATTCACT 76 95 1 GGCGATCGCC 0.499998 -206 ********** Masking position 4 Map Score: 75.0331 Number of sites scoring better than the average of aligned sites = 5919 Number in coding regions = 5370 Number in noncoding regions = 549 Number of orfs with sites within 600 bp upstream = 335 Fraction of orfs with sites within 600 bp upstream = 0.0538066 Motif number 2 GTAGAGGACTGGGGGACAGGGAAATGGGTTT 2 50 1 GGGGGACAGG 0.980983 -212 GATTTTGGATCGGGGATAGGGGAGGAAGTAT 3 133 0 CGGGGATAGG 0.859315 -41 AATGATGTCTGGGAGCTTGGGGTTAGAAGTT 7 48 0 GGGAGCTTGG 0.786484 -182 TGCTTTATCGGGGAAATATGGCCCAGATCGC 9 32 0 GGGAAATAGG 0.626003 -177 TCACTCCCCCGGGGGAAAAGGGAGAGAAAGG 9 115 0 GGGGGAAAGG 0.989009 -94 CCCCAATGCTGGGGGACTTTGACTTAGTTTC 10 34 1 GGGGGACTTG 0.785012 -267 CCCAAATTTGGGGGGAAACTAAGTCAAAGTC 10 48 0 GGGGGAAATA 0.594946 -253 CCCAAATTTGGGGGGCCAGGGGGGCTTTTCA 10 67 1 GGGGGCCAGG 0.985462 -234 GAAACGGCCAGGGGCCAATGGGTTCCCCCAT 11 27 0 GGGGCCAAGG 0.804518 -136 GATTCGCCTAGGGGGCAAGGAGTTCCTTGCG 11 109 0 GGGGGCAAGA 0.90972 -54 GACGTGGAATGGGAAAAACGGGGATGCTTAC 14 129 1 GGGAAAAAGG 0.705205 -172 CCTTCGGAAGGGGGGCTAGGGGGGATTAAAC 14 193 0 GGGGGCTAGG 0.988058 -108 GCTTAAAAAGGGGGACTTTGGTAACCGTTCC 14 226 0 GGGGACTTGG 0.870922 -75 ATGGAGGTAAGGGGAAATTGACGCTACCGTG 15 27 1 GGGGAAATGA 0.384753 -51 CTTCCCGGAGGCAATGGCAATTTTTCT 23 81 0 GGAGGCAAGG 0.917371 -17 ATATCGTAGTGGAAGAAAAGGAAGTGCAAAA 25 14 0 GGAAGAAAGG 0.504418 -96 CTTTTCCCCAGGGGGCAAATCACTGGGAA 28 9 0 GGGGGCAATC 0.713049 -77 GCTGGATGGTGGGTAAAATGGGCTTGGGTTG 30 80 1 GGGTAAAAGG 0.519968 -27 AAAATTCTCCGGGGGAAACGCATAGTTTCGA 31 63 0 GGGGGAAAGC 0.908025 -238 AATCCCCCTTGGGGGAAAATGCCAAGGAACT 31 263 1 GGGGGAAATG 0.945162 -38 TGGAGTCCATCGGGGCCATGGG 33 2 0 CGGGGCCAGG 0.868004 -234 AGCAATCGGAGGGTGATATTGACTTTATGTC 34 75 0 GGGTGATATG 0.396813 -202 TCGCCGTGGTGGGGGCAGGGGTTTTGTTAAG 34 228 1 GGGGGCAGGG 0.926922 -49 CTTTTTTCTTGGGGGATGGGGTTTTGAAACA 35 148 0 GGGGGATGGG 0.871032 -101 AAGAAAAAAGGGAGGAAAAGCAGAAAATTCG 35 169 1 GGAGGAAAGC 0.481045 -80 CCCGAACTGAGGAGACTAGGGGAGCTTGAAA 38 99 1 GGAGACTAGG 0.631573 -47 GCTGGTAAACGGAGAAAACGGGAAAATTAAC 39 12 1 GGAGAAAAGG 0.650889 -42 CCAAATTTTGGGGGGATTAGGGGGACTTTTC 42 137 1 GGGGGATTGG 0.958793 -31 TAGCCACTCTGGGGAATTTTGCAGAGCCGAT 52 119 0 GGGGAATTTG 0.49584 -98 AGAATTCAAGGGAGCAATGATGTTCGGCCA 53 62 0 GGGAGCAAGA 0.548318 -20 GGTTCCCCTTGGGTGCTATGGT 54 129 1 GGGTGCTAGG 0.818618 -12 CCCAAATTTGGGGGGAAACTGAGTGAAACTC 57 86 0 GGGGGAAATG 0.945162 -175 GGGGGGTCAGGGGGGCTTTTGAAACATGCTC 57 114 1 GGGGGCTTTG 0.854154 -147 CTGAGGGGACTTGTGGTTTTCGATG 61 5 1 GGGGACTTTG 0.563773 -178 AACTTTGACCGGGGGAATAGAGTTTAATAGT 62 75 1 GGGGGAATGA 0.739168 -61 CCGATCGCCAGGGAGCAATGGGTCCTCGGAA 63 59 0 GGGAGCAAGG 0.934405 -108 GGGTTTGGGGGGCCAGGGCCTAGGAGAA 67 168 0 GGGGGCCAGG 0.985462 -18 GGAAAAATGGGGAATTAGGAAAGGCAAAT 68 63 0 GGGGAATTGG 0.836991 -19 CCCTTTGGAAGGGGGAAACTGTTACACAAGT 69 89 0 GGGGGAAATG 0.945162 -212 CCCTTCCAAAGGGGGCTAGGGGGGATTAAAC 69 107 1 GGGGGCTAGG 0.988058 -194 CTGGGGGGAAGGGGGATATGGATTTAACCAT 70 162 0 GGGGGATAGG 0.984366 -139 GCTTGAACCTGGGGGAATGGCT 72 2 0 GGGGGAATGC 0.784875 -124 GGAGAAAAAAGGAGACCACGGACTTTTTTTC 78 53 0 GGAGACCAGG 0.584107 -58 GAACTTTCCGGGGGAACATGGGGAACATATA 80 138 0 GGGGAACAGG 0.919245 -146 CCTGCTTTTTGGGAGAAATTGATTCCAACAG 80 218 0 GGGAGAAATG 0.674945 -66 TTACCCGGGTCGGGGCATTGGGAGATTTAAA 81 52 1 CGGGGCATGG 0.809135 -137 TAGGTTCCAGCGGGGCCAAGGCGAGTTTTTG 81 114 0 CGGGGCCAGG 0.868004 -75 ******** ** Masking position 2 Map Score: 65.7483 Number of sites scoring better than the average of aligned sites = 3620 Number in coding regions = 3193 Number in noncoding regions = 427 Number of orfs with sites within 600 bp upstream = 335 Fraction of orfs with sites within 600 bp upstream = 0.0538066 Motif number 3 CCCCATGACCTCATTTACTTG 2 251 0 CCCCATGACT 0.740498 -11 TCTGATTCTGCCTCCTAAATCCCCCAATGCT 10 13 1 CCTCCTAATC 0.348364 -288 ACTTAGTTTCCCCCCAAATTTGGGGGGCCAG 10 55 1 CCCCCAAATT 0.608683 -246 TTTGAAAAGCCCCCCTGGCCCCCCAAATTTG 10 69 0 CCCCCTGGCC 0.981837 -232 TGATGGTGGTGCCCCTAACCGTCAATGGTTA 10 223 0 GCCCCTAACG 0.610536 -78 GAACCCATTGGCCCCTGGCCGTTTCCTAGAA 11 33 1 GCCCCTGGCG 0.614394 -130 GAACTCCTTGCCCCCTAGGCGAATCGCTTTA 11 115 1 CCCCCTAGCG 0.925333 -48 CTGTTTAATCCCCCCTAGCCCCCCTTCCGAA 14 191 1 CCCCCTAGCC 0.988533 -110 TTTTATTCCGCCCCCTAAATTGACCCACTAA 14 264 0 CCCCCTAATT 0.909507 -37 AGCGTCAATTTCCCCTTACCTCCATCGACAT 15 21 0 TCCCCTTACT 0.405972 -57 TTGTCTCGCCCCCCCTAGCCTGACCTCTGAC 23 42 0 CCCCCTAGCT 0.971488 -56 TTTTTCTTTGCCCCATTGTCTCGCCCCCCCT 23 57 0 CCCCATTGCT 0.781116 -41 GGGAAAAGTACCCCCTTGACTTTTGTAATTG 28 32 1 CCCCCTTGCT 0.942808 -54 GCTAGAGGTCGCCCATTGCTTCAGTGGCGGC 34 103 1 GCCCATTGTT 0.259168 -174 TTCAACGAGCCCCCCTGAGTCTTTCCA 36 31 1 CCCCCTGATC 0.940985 -17 TTTTAATTTGCCCCCTAAATCTCCCAATACC 38 45 1 CCCCCTAATC 0.962162 -101 TTTTTCAAGCTCCCCTAGTCTCCTCAGTTCG 38 101 0 TCCCCTAGCT 0.696015 -45 TTTTATTCCGCCCCCTAAATCTCCTTACTAA 42 66 1 CCCCCTAATC 0.962162 -102 TTTGAAAAGTCCCCCTAATCCCCCCAAAATT 42 140 0 CCCCCTAACC 0.981544 -28 AACGATTTATCTCCCTAAACCTCTCTTAAAA 46 93 0 CTCCCTAACC 0.534495 -101 CTGCTTTTTTGCCCCTGGTTCCT 49 133 1 GCCCCTGGTC 0.841246 -13 AGGTATTTATCCCCCTAAATCGACCCACTAA 57 36 1 CCCCCTAATC 0.962162 -225 ACTCAGTTTCCCCCCAAATTTGGGGGGTCAG 57 93 1 CCCCCAAATT 0.608683 -168 TTTCAAAAGCCCCCCTGACCCCCCAAATTTG 57 107 0 CCCCCTGACC 0.970888 -154 TAAATTTTTCTCCCATAACTCAGCCAA 60 7 0 TCCCATAATC 0.270021 -182 TTTCCGCCTCGCCCCTTGTTTGAATTGACAA 61 104 1 GCCCCTTGTT 0.617739 -79 TTTAGGTTGTCCCCATTGCCC 61 172 1 CCCCATTGCC 0.900287 -11 TCCCATTATACCCCATTGTCCAAGCAAAACC 64 48 1 CCCCATTGCC 0.900287 -117 AGGCCCTGGCCCCCCAAACCC 67 175 1 CCCCCAAACC 0.89167 -11 TTTCCTAATTCCCCATTTTTCC 68 70 1 CCCCATTTTC 0.251493 -12 AAGGATTTATCCCCCTAAATCTCCTTACTAA 69 37 1 CCCCCTAATC 0.962162 -264 CTGTTTAATCCCCCCTAGCCCCCTTTGGAAG 69 109 0 CCCCCTAGCC 0.988533 -192 TTTCGAGCTTCCCCATTGGTCTTGGTTTTAA 70 85 1 CCCCATTGTC 0.81191 -216 AAATCCATATCCCCCTTCCCCCCAGAGGGTA 70 168 1 CCCCCTTCCC 0.731796 -133 AGCCATTCCCCCAGGTTCAAGCCGTAAA 72 8 1 CCCCCAGGTC 0.799995 -118 TGCTGTTTGCCCCCCAAAGTTGCCCTGTCCG 72 66 1 CCCCCAAATT 0.608683 -60 CTCTCTATCACACCCTAGACTGACTGCCCAG 73 125 1 CACCCTAGCT 0.423833 -176 ACTATATGTTCCCCATGTTCCCCCGGAAAGT 80 136 1 CCCCATGTCC 0.476664 -148 ATATAATACAGCCCATAGCCTATTGCTTCCC 85 16 0 GCCCATAGCT 0.601967 -150 ******** ** Masking position 4 Map Score: 42.6822 Number of sites scoring better than the average of aligned sites = 2199 Number in coding regions = 1805 Number in noncoding regions = 394 Number of orfs with sites within 600 bp upstream = 273 Fraction of orfs with sites within 600 bp upstream = 0.0438484 Motif number 4 GCCAGGGGGGCTTTTCAAACACGCTCTTAGTAAAG 10 81 1 CTTCAACAGT 0.991578 -220 CAAAACCCAGCTTTTGAAACACGCTTTGAAGTAAG 14 155 0 CTTGAACAGT 0.971067 -146 CGGAATAAAACTTTCCAAACACGTTC 14 285 1 CTTCAACAGT 0.991578 -16 CAAATTAAAACTTGGCAAACAGGCTCTAGGAAAAG 38 20 0 CTTCAACAGT 0.991578 -126 ATTAGGGGGACTTTTCAAACACGTTC 42 152 1 CTTCAACAGT 0.991578 -16 CAAAACACAGCTTTCCAAACAAGAT 46 1 0 CTTCAACAGT 0.991578 -193 CTTAAGGATGCTTTTCAAACATGCTT 47 2 0 CTTCAACAGT 0.991578 -93 TAGCCTTGCACTTTTCAAACACTTTC 57 2 0 CTTCAACATT 0.962949 -259 GTCAGGGGGGCTTTTGAAACATGCTCTAAGAATTT 57 119 1 CTTGAACAGT 0.971067 -142 TTGATTTTGACTTTTCAAACAAACTCT 69 3 0 CTTCAACAAT 0.947748 -298 AAAAGAGGGACTTGTGTAACAGTTTCCCCCTTCCA 69 80 1 CTTGAACATT 0.881081 -221 CAAAACAGAACTTTCCAAACACTTTCTCAAGGGGC 69 141 1 CTTCAACATT 0.962949 -160 ATAATGTCACCTTAACCAACACATTTTCCAAATTA 76 41 0 CTTCAACAAT 0.947748 -260 ATTCCCTTACCTAACAGGGTTTTGGAACCA 79 53 0 CTTCAACAGT 0.991578 -20 *** * **** * * Masking position 8 Map Score: 29.3746 Number of sites scoring better than the average of aligned sites = 81 Number in coding regions = 11 Number in noncoding regions = 70 Number of orfs with sites within 600 bp upstream = 54 Fraction of orfs with sites within 600 bp upstream = 0.00867331 Motif number 5 TTAGCCTGGAATGGCCTTGGGTTGTCTTTG 1 56 1 ATGGCCTTGG 0.922747 -41 AAAAGGAAGAATCCCCATGGCGACCAAGCA 2 106 0 ATCCCCATGG 0.923567 -156 TACCTATGGGATCGCCATGGCAAACCTGCC 5 91 0 ATCGCCATGG 0.973885 -127 AGTCAAGGCTATGGCCTGGGCAACTCGCAC 5 168 0 ATGGCCTGGG 0.924103 -50 TTCCTCAACCATTGCCAATGGACCTTGGAA 8 60 1 ATTGCCAATG 0.276009 -22 CTCCTTGGCGATCGCCAAGGAGGCAAGATT 10 278 0 ATCGCCAAGG 0.883289 -23 GTTCTAGGAAACGGCCAGGGGCCAATGGGT 11 35 0 ACGGCCAGGG 0.569155 -128 CAAAAAGTCCCTTCCCTGGGCTTT 13 5 0 CTTCCCTGGG 0.581538 -227 CATAGCGGGGCTTGCCATGGAGG 14 4 0 CTTGCCATGG 0.869385 -297 ATAATCGGCGATCGCCTTTGGGAGAGGTAA 21 54 1 ATCGCCTTTG 0.767892 -22 GCAAAGAAAAATTGCCATTGCCTCCGGGAA 23 77 1 ATTGCCATTG 0.652599 -21 TGCCATGACAATGGCCGTGGATAAGCCAAA 24 81 1 ATGGCCGTGG 0.805434 -35 GGGGGTACTTTTCCCCAGGGGGCAAATCAC 28 17 0 TTCCCCAGGG 0.667488 -69 TTTGTGCTTAATTGCCTTGGTGCGTCCCAC 32 103 1 ATTGCCTTGG 0.894306 -28 CCCCACGGCGATCGCCTTGGGAAACTTTGA 33 33 0 ATCGCCTTGG 0.959306 -203 ACCAGGGGCGATCGCCGTGGTGGGGGCAGG 34 217 1 ATCGCCGTGG 0.890948 -60 TCGTTGCAGGTTCCCCTTGGGTGCTATGGT 54 121 1 TTCCCCTTGG 0.554534 -20 ATCAAATTAAATTGCCTTTGCTCCACCCAA 57 188 1 ATTGCCTTTG 0.542849 -73 CGCTAAGGCGATCGCCAGGGAACTTTTTCT 60 91 1 ATCGCCAGGG 0.974368 -98 GCAGATGCCGATCGCCAGGGAGCAATGGGT 63 67 0 ATCGCCAGGG 0.974368 -100 TGGGGAGGCGATCGCCATTGATCTTCCTTC 68 31 1 ATCGCCATTG 0.83958 -51 CTAATGTTTTCTTCCCATGGTCAAAGGTAA 70 270 0 CTTCCCATGG 0.683213 -31 CCTAGACTGACTGCCCAGGGAAAAATTCAC 73 138 1 CTGCCCAGGG 0.756307 -163 TTAATCGACCATGGCCAAGGGCAAGGCAAA 76 14 0 ATGGCCAAGG 0.793165 -287 AGGTTAACAATTTGCCTTGGAGAAAAAAGG 78 72 0 TTTGCCTTGG 0.579648 -39 TAATTCCCTGATCGCCAGAGCTTTTCCGTA 80 59 1 ATCGCCAGAG 0.568251 -225 TGACCAAAAACTCGCCTTGGCCCCGCTGGA 81 110 1 CTCGCCTTGG 0.921398 -79 CTTTCAGTTACTCCCCAGGGCATTGGAGCT 84 144 1 CTCCCCAGGG 0.85965 -46 TTATCAAAATATGGCCCGGGAAAACTTTGC 85 88 0 ATGGCCCGGG 0.696321 -78 ********** Masking position 5 Map Score: 29.3859 Number of sites scoring better than the average of aligned sites = 3072 Number in coding regions = 2801 Number in noncoding regions = 271 Number of orfs with sites within 600 bp upstream = 280 Fraction of orfs with sites within 600 bp upstream = 0.0449727 Motif number 6 AAAAACCAATGGCTTTTCTTTGTTTTTGCCCAACTGCTCC 3 13 0 GTTTCTTTCC 0.971175 -161 TGCAAAAACCGCCCTTTCTCTCCCTTTTCCCCCGGGGGAG 9 103 1 GTTTCTTTCC 0.971175 -106 CAATGCTGGGGGACTTTGACTTAGTTTCCCCCCAAATTTG 10 37 1 GTTTGTTTCC 0.738595 -264 GTGGGGGTTTGCTTTTGTGCCAAAATTGCCTCAATTTGCC 31 102 1 GTTGTATTCC 0.483625 -199 ATCGTTGGCGGTAGTTCCTTGGCATTTTCCCCCAAGGGGG 31 266 0 GTTCCTTTCC 0.955427 -35 TTTCACGGTTGTTTTTTCAATCGAATTTTCTGCTTTTCCT 35 181 0 GTTTCATTTC 0.456139 -68 CCCCTGACGAAAAATTTTCCCTTTTTTTCCAATCAGACAA 37 73 0 ATTTTTTTCC 0.821494 -79 AGGTTTTTCAGACTTTTACCATTACATCAG 37 132 0 ATTTTTTTCC 0.821494 -20 ACGGGGAGTTAAAATTTCTTAACTTTTACCAACTGGTAAG 44 53 0 ATTTCTTTCC 0.935797 -91 TAAAAAGAGTGATTTTTCAATTATTTTCCCCTTGTGAATG 46 58 0 GTTTCTTTCC 0.971175 -136 TCCTCCCACTATTGTTGCTGCTTTTTTGCCCCTGGTTCCT 49 116 1 ATTGCTTTCC 0.882163 -30 CGGTCAGCCAGCTATTTCATTTTCATTACCCAATTCCTGC 54 53 0 GTTTCATTCC 0.852405 -88 CAATACTGGGGGAGTTTCACTCAGTTTCCCCCCAAATTTG 57 75 1 GTTTCTTTCC 0.971175 -186 AGTCTAGGCAAATTTTGCAATATTTTTCCCCAGCCTAGCA 57 224 0 ATTGCTTTCC 0.882163 -37 GCACTACTACAGTCTTGTAAGTATTTTGCCAAATTTGACT 61 38 0 ATTGTTTTCC 0.70271 -145 GATCGCCATTGATCTTCCTTCCCATTTGCCTTTCCTAATT 68 40 1 GTTCCTTTCC 0.955427 -42 GCCAAAACAGAACTTTCCAAACACTTTCTCAAGGGGCAAG 69 139 1 ATTCCTTTTC 0.573862 -162 CAAGCCGTAAATATTTTTAAATACTTTCCCCTGCGCTTTG 72 28 1 ATTTTTTTCC 0.821494 -98 CCTTTGCAAAGGAATTCCGATAGATTTTTCAATGGTACGA 73 203 1 GTTCCTTTTC 0.756849 -98 ATGGTACGACGCTTTTCCAAAGATTTTCTCGGACTAGGTT 73 234 1 GTTCCTTTTC 0.756861 -67 GAATGGGGTGATTGTTTTGCTCAATTTACCCGGGTCGGGG 81 27 1 ATTTTTTTCC 0.821494 -162 GTAATACCTGGTACTTTTATTTAGTTTCCCGGAAATTTGG 83 116 1 GTTTTTTTCC 0.914074 -46 * **** *** ** Masking position 6 Map Score: 19.359 Number of sites scoring better than the average of aligned sites = 414 Number in coding regions = 323 Number in noncoding regions = 91 Number of orfs with sites within 600 bp upstream = 106 Fraction of orfs with sites within 600 bp upstream = 0.0170254 Motif number 7 GATGTTATCTAACTCTTATTTAGCCCGATCGCCAAT 5 49 1 AATCTTTGCC 0.782533 -169 GGCCTTGATTAATTTTGTTGGTGACCAATTCCCGGT 14 61 0 AATTTGGGCC 0.80946 -240 CGTGTTTGGAAAGTTTTATTCCGCCCCCTAAATTGA 14 272 0 AATTTTTGCC 0.969771 -29 AAATTTTTAAAAAGTCAAAATCAACAC 19 2 1 AATTTTAGCA 0.541054 -52 GAGGCAATGGCAATTTTTCTTTGCCCCATTGTCTCG 23 65 0 CATTTTTGCC 0.782533 -33 ACTAGTTCTCAATTTTTGATTTGTCACCCCCGGACT 27 45 1 AATTTTTGCA 0.91054 -30 CGCCTTGGGAAACTTTGATGGAGTCCATCGGGGCCA 33 15 0 AATTTGGGCC 0.80946 -221 ACAATTCTAGAAATTTTTGTGAGCCCAAGGGA 35 227 1 AATTTTTGCC 0.969771 -22 CCTGTTTGCCAAGTTTTAATTTGCCCCCTAAATCTC 38 32 1 AATTTTTGCC 0.969771 -114 CGTATTTGGAAAATTTTATTCCGCCCCCTAAATCTC 42 53 1 AATTTTTGCC 0.969771 -115 ATCGCCAGGGAACTTTTTCTGGGTCAGAGCCCGGCT 60 101 1 AATTTTTGCA 0.91054 -88 GTCCTGCCAAAATTTTTAGGTTGTCCCCATTGCCC 61 158 1 AATTTTGGCC 0.95096 -25 TTAACTGAGAAAGTTGTGCTCGGGCCTCTCACAAGA 62 105 0 AATTGTTGCC 0.782533 -31 GGTTTTAAATAACTTTTGGTTTGTCCAACTGCCCTG 70 108 1 AATTTTTGCC 0.969771 -193 GTTGAAAGTGAATTTTTCCCTGGGCAGTCAGTCTAG 73 139 0 AATTTTCGCA 0.762785 -162 GTTAAAGACCAAGTTTTTGGATGACAGCCTAACCAT 73 271 1 AATTTTGGCA 0.860183 -30 TATGTTGACAAAATTTTGGTCTGTCCCCTCCGCAGT 83 76 1 AATTTTTGCC 0.969771 -86 ATCTGAGGCAAAGTTTTCCCGGGCCATATTTTGATA 85 81 1 AATTTTCGCA 0.762785 -85 ** **** * * ** Masking position 4 Map Score: 18.8543 Number of sites scoring better than the average of aligned sites = 160 Number in coding regions = 108 Number in noncoding regions = 52 Number of orfs with sites within 600 bp upstream = 50 Fraction of orfs with sites within 600 bp upstream = 0.00803084 Motif number 8 TCGCACTCTAATTAATGGTCTGGAGATTCACTG 5 141 0 ATAAGGCTGG 0.696606 -77 AAATTGACCCACTAAAGCTCCGGCTTAAAAAGG 14 246 0 ACAAGCCCGG 0.993209 -55 ACACGGCGGGACAAAAGCCCGGGAGACTTTAAT 22 211 1 ACAAGCCGGG 0.965654 -90 TAATGACAACACCTAAGCACTGGTCATTAAAGT 22 236 0 ACTAGCCTGG 0.945139 -65 AACGCCTAGGACGAATGCCCCGGTGACCACCCT 35 114 0 ACAAGCCCGG 0.993209 -135 TTCCAATCAGACAAATGGGCCGGAGCGGATAAC 37 54 0 ACAAGGCCGG 0.969165 -98 AAATCTCCTTACTAACGCTCCGGCGGTACGAGG 42 82 1 ACAAGCCCGG 0.993209 -86 AAATCGACCCACTAAAGCTCCGGCAATACTGGG 57 52 1 ACAAGCCCGG 0.993209 -209 CGAAATTTAAATCAAAGCTCTGGATTAAGCCAG 67 76 1 ATAAGCCTGG 0.914409 -110 TTGCTTATTCTCCTAGGCCCTGGCCCCCCAAAC 67 161 1 TCTAGCCTGG 0.794239 -25 AAATCTCCTTACTAAAGCTCCGGCTTAAAAAGA 69 53 1 ACAAGCCCGG 0.993209 -248 ATCTATAAGCTCCAATGCCCTGGGGAGTAACTG 84 148 0 TCAAGCCTGG 0.945139 -42 ** ** ** **** Masking position 5 Map Score: 19.2216 Number of sites scoring better than the average of aligned sites = 98 Number in coding regions = 54 Number in noncoding regions = 44 Number of orfs with sites within 600 bp upstream = 30 Fraction of orfs with sites within 600 bp upstream = 0.0048185 Motif number 9 CGGCATTAAAACCCATTTCCCTGTCCCCCA 2 59 0 ACCCATTTCC 0.599454 -203 AACAAAGAAAAGCCATTGGTTTTTTAACAA 3 29 1 AGCCATTGGT 0.657463 -145 TCTAATTCTTAGCCATTGTCATCGGGCTAC 8 21 0 AGCCATTGTC 0.374781 -61 TGCTTTCCTCAACCATTGCCAATGGACCTT 8 56 1 AACCATTGCC 0.902776 -26 AGATGGGGGAACCCATTGGCCCCTGGCCGT 11 25 1 ACCCATTGGC 0.961816 -138 CTCTAGGACAAACCTTTGGCGATCGCCGCA 16 48 1 AACCTTTGGC 0.670091 -44 AAACTAACATAACCATTGCTGGCCCTAGGC 24 35 1 AACCATTGCT 0.745645 -81 CTACACCGAAAACTTTTGGCTTATCCACGG 24 95 0 AACTTTTGGC 0.289924 -21 GCTAGAGGTCGCCCATTGCTTCAGTGGCGG 34 103 1 GCCCATTGCT 0.556942 -174 ACCTATTGCCTTTTCCTAGA 38 1 1 ACCTATTGCC 0.883217 -145 CTGGCTCGCCACCTATTGCCATTCAGAAAT 40 42 0 ACCTATTGCC 0.883217 -139 AAGTGTGATTACCCATTGGCACTAGTCGCT 47 34 1 ACCCATTGGC 0.961816 -61 TAAACCCTGGACTCATTGGCCGAACATCAT 53 46 1 ACTCATTGGC 0.501372 -36 TTTGATTTCGACCTTTTGCCC 58 2 0 ACCTTTTGCC 0.71123 -48 GGTAAAAAGAACCCTTTGGTTCAACAACCG 59 65 1 ACCCTTTGGT 0.72214 -24 TTTAGGTTGTCCCCATTGCCC 61 172 1 CCCCATTGCC 0.880154 -11 GATTCCGAGGACCCATTGCTCCCTGGCGAT 63 57 1 ACCCATTGCT 0.922071 -110 TTTCGAGCTTCCCCATTGGTCTTGGTTTTA 70 85 1 CCCCATTGGT 0.609024 -216 ACGTCCCGTCAACCTTTGCTAATTATTCCT 71 45 0 AACCTTTGCT 0.488366 -33 TCAGCCATTGCCGTAAACTGCC 74 3 1 AGCCATTGCC 0.90096 -44 CCCCGCTGGAACCTATTGCCTAGCATTGCA 81 130 1 ACCTATTGCC 0.883217 -59 ********** Masking position 6 Map Score: 17.2437 Number of sites scoring better than the average of aligned sites = 1152 Number in coding regions = 1030 Number in noncoding regions = 122 Number of orfs with sites within 600 bp upstream = 149 Fraction of orfs with sites within 600 bp upstream = 0.0239319 Motif number 10 AATGGCTTTTCTTTGTTTTTGCCCAACTGCTCCT 3 12 0 CTTTTTGCCC 0.305802 -162 CTGTATTCCCAAGTCTTTTTACCCACACTTTTT 4 40 0 CACTTTTACC 0.643375 -23 CCGCCCTTTCTCTCCCTTTTCCCCCGGGGGAGTG 9 111 1 TTCTTTCCCC 0.45506 -98 TGGGGGACTTTGACTTAGTTTCCCCCCAAATTTG 10 43 1 TATATTTCCC 0.736773 -258 CTTCCACATCTTAACTAGTTTCCCGAAAACGGAT 13 169 0 TATATTTCCC 0.736773 -63 ACTCTGTTAGCCAATCAATTTCCCTAATACT 18 82 1 CACATTTCCC 0.961623 -21 TTTACAAAGCCTAGCCTGTTTCTCTCGGACCAGC 22 160 0 CACTTTTCTC 0.449559 -141 TAGCTTCAGCCTTTTTTATTTCCCT 23 2 0 CTTTTTTCCC 0.771003 -96 AGACTCGAAACTATGCGTTTCCCCCGGAGAATTT 31 59 1 CACGTTCCCC 0.43858 -242 GCGGTAGTTCCTTGGCATTTTCCCCCAAGGGGGA 31 265 0 CTCATTTCCC 0.923999 -36 CGATGGACTCCATCAAAGTTTCCCAAGGCGATCG 33 21 1 CTAATTTCCC 0.460205 -215 CTAGGAATAACGATTTTTTTGCCCTGACCGATTA 33 125 0 CATTTTGCCC 0.475863 -111 CAACCCCTGACGAAAAATTTTCCCTTTTTTTCCA 37 82 0 CAAATTTCCC 0.637303 -70 TTTCATTGGGCAACCCATTTTACCAGATTTCTGA 40 16 1 CACATTTACC 0.70883 -165 AATCAAAACAATTTCCTTTAACGGTTC 45 58 0 CACATTTCCT 0.532148 -17 GAGTGATTTTTCAATTATTTTCCCCTTGTGAATG 46 58 0 TATATTTCCC 0.736773 -136 GCCGCCAGCCCGACGTTTTTTCCCACTGGTGTAC 48 116 1 CATTTTTCCC 0.874042 -52 TTAAAATAGCCCAGACAATTTGCCAAAATATTGG 56 64 0 CACATTTGCC 0.746179 -27 TGGGGGAGTTTCACTCAGTTTCCCCCCAAATTTG 57 81 1 TACATTTCCC 0.882216 -180 GCAAATTTTGCAATATTTTTCCCCAGCCTAGCAA 57 223 0 CATTTTCCCC 0.6827 -38 CCCATTTGCCTTTCCTAATTCCCCATTTTTCC 68 60 1 TTTATTCCCC 0.296315 -22 GAGGGACTTGTGTAACAGTTTCCCCCTTCCAAAG 69 84 1 TTCATTTCCC 0.784213 -217 ACAGAACTTTCCAAACACTTTCTCAAGGGGCAAG 69 145 1 CACATTTCTC 0.524283 -156 AGATCGCGGTCTAAACTCTTCCCCTGGAAGTCCG 70 38 1 CACTTTCCCC 0.85202 -263 CAATGTTGAATAAATTTTTTTACCTTTGACCATG 70 251 1 TATTTTTACC 0.167721 -50 GTAAATATTTTTAAATACTTTCCCCTGCGCTTTG 72 34 1 TATATTTCCC 0.736773 -92 TTCCCCTGCGCTTTGCTGTTTGCCCCCCAAAGTT 72 53 1 CTCTTTTGCC 0.513866 -73 CTCAACTACCCCTCGCTGTTTACCGGGAAATC 73 9 0 CTCTTTTACC 0.466761 -292 TCACCTTAACCAACACATTTTCCAAATTAATCGA 76 36 0 CACATTTCCA 0.39211 -265 GGAAAACACCTTTCCCATTTTGCCCTCTTCCCAG 76 260 0 TTCATTTGCC 0.298921 -41 AAACTCAAACCGAAACTATTTCCCGCTCACCGAT 79 11 0 CACTTTTCCC 0.948899 -62 CCTGGTACTTTTATTTAGTTTCCCGGAAATTTGG 83 122 1 TATATTTCCC 0.736773 -40 CCTTTCACTTTCCCTGCCAAATTT 83 148 0 CTCATTTCCC 0.923999 -14 AGGGGGAAAGCAAACCTCTTTCCTCACACTTCTA 84 35 1 CACTTTTCCT 0.45738 -155 * * ** ****** Masking position 9 Map Score: 19.6602 Number of sites scoring better than the average of aligned sites = 1471 Number in coding regions = 1257 Number in noncoding regions = 214 Number of orfs with sites within 600 bp upstream = 210 Fraction of orfs with sites within 600 bp upstream = 0.0337295 Motif number 11 GGGTCAACTCCAAAGACAACCCAAGGCCATTC 1 64 0 CAAAGACCCC 0.812557 -33 AGCTTAGTTGCAAAAACCGCCCTTTCTCTCCC 9 95 1 CAAAAACCCC 0.92728 -114 ATTCTGCCTCCTAAATCCCCCAATGCTGGGGG 10 17 1 CTAAATCCCA 0.823605 -284 GAAACTAAGTCAAAGTCCCCCAGCATTGGGGG 10 33 0 CAAAGTCCCA 0.820678 -268 ATTCCGCCCCCTAAATTGACCCACTAAAGCTC 14 259 0 CTAAATTCCC 0.731956 -42 AAAGAAAAATCAAAATCCCTCCGATTACTGGT 18 36 0 CAAAATCTCC 0.724434 -67 TTTAAAAAGTCAAAATCAACACAGTAAAACTT 19 16 1 CAAAATCCAC 0.881169 -38 ACACAGTTAACTTAATCATCCCTAGCTAGGGT 22 81 1 CTTAATCCCC 0.596515 -220 AGCTAAACAACAAAATCTGCCCAGGAGTTATT 22 268 0 CAAAATCCCC 0.984334 -33 TCAGTATCCACAAAATCTCCAAAATTTCTCAA 33 168 0 CAAAATCCAA 0.613715 -68 ACAGAAAGTTCAAATTCGTCCCAAATCGAGCA 34 177 0 CAAATTCCCC 0.843169 -100 GGGAACAGCTCAAAAACCACACTGGTAAAACT 35 23 1 CAAAAACCAC 0.60078 -226 AATTTGCCCCCTAAATCTCCCAATACCGGGGG 38 49 1 CTAAATCCCA 0.823605 -97 ATCGGCTCTGCAAAATTCCCCAGAGTGGCTAG 52 119 1 CAAAATTCCA 0.627823 -98 CAACAGTGGTCAAAATAAACCCTGGACTCATT 53 31 1 CAAAATACCC 0.757048 -51 ATTTATCCCCCTAAATCGACCCACTAAAGCTC 57 40 1 CTAAATCCCC 0.956126 -221 GAGCATGTTTCAAAAGCCCCCCTGACCCCCCA 57 113 0 CAAAAGCCCC 0.882072 -148 CTCGAACTCTCAAACTCTTCCCAAACCTATAT 67 127 1 CAAACTCCCC 0.888496 -59 GTGGGCAAAATCTACCCTTAGGAATAG 70 6 1 CAAAATCCCC 0.984334 -295 CCATCTGAGGCAAAGTTTTCCCGGGCCATATT 85 79 1 CAAAGTTCCC 0.728009 -87 ******* *** Masking position 4 Map Score: 15.0843 Number of sites scoring better than the average of aligned sites = 553 Number in coding regions = 479 Number in noncoding regions = 74 Number of orfs with sites within 600 bp upstream = 76 Fraction of orfs with sites within 600 bp upstream = 0.0122069 Motif number 12 GCCTGACAAATCCCTGGAGTGGCCAATGATGT 7 71 0 TCCTGGATGG 0.871892 -159 CTATTGTTGTTCTCTGGGTTGGCGATTGGGGT 7 129 0 TTCTGGGTGG 0.776742 -101 AACTTAATCATCCCTAGCTAGGGTAGGGGATA 22 89 1 TCCTAGCAGG 0.729973 -212 GACGATCACATTCCTAGACTGGATTTTTTCCT 29 76 0 TCCTAGATGG 0.96461 -60 GAATACAGTTTTTCTAGGTTGGGCAGTGTGGG 31 144 0 TTCTAGGTGG 0.933036 -157 AAAATCGTTATTCCTAGAAGGGGGGGTTGAGA 33 142 1 TCCTAGAGGG 0.787153 -94 TTTACTTCTATCCCTAGGCTGGCGATCGCCTT 35 56 1 TCCTAGGTGG 0.977591 -193 TTTTTATGGCTATCTAGGGTGGTCACCGGGGC 35 99 1 TTCTAGGTGG 0.933036 -150 CTCACAAAAATTTCTAGAATTGTCCGTAATTT 35 218 0 TTCTAGATTG 0.716865 -31 TCTGCAAAATTCCCCAGAGTGGCTAGCTGGTT 52 125 1 TCCCAGATGG 0.871892 -92 GGGGGATAAATACCTAGCCTTGCACTTTTCAA 57 19 0 TCCTAGCTTG 0.89571 -242 CCCAATTGTTTTGCTAGGCTGGGGAAAAATAT 57 213 1 TGCTAGGTGG 0.835923 -48 TTGCAAAATTTGCCTAGACTTGCTCCT 57 244 1 TCCTAGATTG 0.887985 -17 ACCGAGGGACTTCCCAGGTTTGACAGAGTAAA 65 25 0 TCCCAGGTTG 0.760089 -90 TGGAACCTATTGCCTAGCATTGCAGACCTGAA 81 136 1 TCCTAGCTTG 0.89571 -53 GGCTGTATTATATCTAGCTTGGCTAAGTGATC 85 34 1 TTCTAGCTGG 0.904136 -132 * ****** *** Masking position 1 Map Score: 12.0471 Number of sites scoring better than the average of aligned sites = 248 Number in coding regions = 206 Number in noncoding regions = 42 Number of orfs with sites within 600 bp upstream = 46 Fraction of orfs with sites within 600 bp upstream = 0.00738837 Motif number 13 TTAAGACATAGGGGTTAAAAAGTGTGGGTAA 4 24 1 GGGGTTAAAA 0.962259 -39 CTGGGAGCTTGGGGTTAGAAGTTTTTGGTAG 7 40 0 GGGGTTAGAG 0.817861 -190 CTAAGGGGTGGGGGTTAAAAATC 9 196 1 GGGGTTAAAA 0.962259 -13 AGTTAGTCCGGGGGTGACAAATCAAAAATT 27 55 0 GGGGGTGAAA 0.817861 -20 CCATCCAGCCGAGGTTAATAGAAAAACAAGA 30 58 0 GAGGTTAAAG 0.855205 -49 CCTAGAAGGGGGGGTTGAGAAATTTTGGAGA 33 154 1 GGGGTTGAAA 0.959749 -82 TTTTTCGTCAGGGGTTGACAATCCCCGGCAC 37 99 1 GGGGTTGAAA 0.959749 -53 TGGGGTTAACTGAGAAAGTTGT 62 124 0 GGGGTTAATG 0.751839 -12 CTTCTTGACCGGGGTTGAAAGTGAATTTTTC 73 157 0 GGGGTTGAAG 0.95708 -144 TAGATACAGTGAGGTTAAGAAATAAGCAGAA 76 167 1 GAGGTTAAAA 0.863305 -134 CCGACCTCAGGAGGTTAACAATTTGCCTTGG 78 82 0 GAGGTTAAAA 0.863305 -29 ******** ** Masking position 6 Map Score: 8.05883 Number of sites scoring better than the average of aligned sites = 70 Number in coding regions = 51 Number in noncoding regions = 19 Number of orfs with sites within 600 bp upstream = 24 Fraction of orfs with sites within 600 bp upstream = 0.0038548 Motif number 14 ATACTTCCTCCCCTATCCCCGATCCAAAATCA 3 133 1 CCCACCCCGA 0.663196 -41 CTGTATTCCCAAGTCTTTTTACCCACACT 4 44 0 CCCATCTTTT 0.240926 -19 GATTTTTAACCCCCACCCCTTAGTTATTGATC 9 187 0 CCCACCCTTA 0.667807 -22 CAATGGGTTCCCCCATCTTAGCGTCGTAGTGG 11 11 0 CCCACTTAGC 0.800579 -152 GATTAAACAGCCAAAACCCAGCTTTTGAAACA 14 169 0 CCAACCCAGC 0.824512 -132 GTTTAATCCCCCCTAGCCCCCCTTCCGAAGGA 14 193 1 CCCACCCCCC 0.724447 -108 GCCCTAACCCACCGAGACTAAAT 20 2 1 CCCACCCACC 0.918466 -59 AAACAATATCCCCTACCCTAGCTAGGGATGAT 22 95 0 CCCACCTAGC 0.963132 -206 GCTGAGTCCGCCCAAACCTATCAGACCCTTAC 30 17 0 CCCACCTATC 0.956731 -90 GCGGACTCAGCCCCAGTTTATCTTGTTTTTCT 30 38 1 CCCATTTATC 0.463836 -69 AGAAATCAACCCAAGCCCATTTTACCCACCA 30 86 0 CCCACCCATT 0.877165 -21 TCAAATTCGTCCCAAATCGAGCAGTGCATGGC 34 168 0 CCCATCGAGC 0.556061 -109 ATTTTCATTACCCAATTCCTGCAATCGGATTT 54 43 0 CCCATCCTGC 0.75121 -98 CAATATTTTTCCCCAGCCTAGCAAAACAATTG 57 215 0 CCCACCTAGC 0.963132 -46 AATTTTTCTCCCATAACTCAGCCAA 60 4 0 CCAACTCAGC 0.419284 -185 TCTAGAACAACCCAAGCTTTTCCGTTATTAGT 65 56 1 CCCACTTTTC 0.488895 -59 TCAAACTCTTCCCAAACCTATATTTTTGCTTA 67 136 1 CCCACCTATA 0.815779 -50 GGAAGAAAATCCCAATTCCATAGACCTTAACC 69 194 1 CCCATCCATA 0.645153 -107 TCTTAATTGCCCCAATCCCATCCCATTGGGAG 71 15 1 CCCACCCATC 0.972719 -63 AAAACAATCACCCCATTCTATTACGGCTTTGC 81 13 0 CCCATCTATT 0.529954 -176 ATAATACAGCCCATAGCCTATTGCTTCCCCTG 85 13 0 CCAACCTATT 0.330602 -153 *** * ****** Masking position 5 Map Score: 8.75757 Number of sites scoring better than the average of aligned sites = 1417 Number in coding regions = 1264 Number in noncoding regions = 153 Number of orfs with sites within 600 bp upstream = 161 Fraction of orfs with sites within 600 bp upstream = 0.0258593 Motif number 15 TAACTAGTTTCCCGAAAACGGATGCTCAAATA 13 160 0 CCGAAACGGA 0.976304 -72 TCATCTCCAACCAGTAATCGGAGGGATTTTGA 18 27 1 CCGAATCGGA 0.987468 -76 CCCCACATCACCAGGAATCGGAACCCTAGAAA 22 124 0 CCGAATCGGA 0.987469 -177 CATTGTCATGGCAGCAATCGGATCTTTATGCC 24 62 0 GCGAATCGGA 0.960002 -54 CAGCACCAATGCAGTAATCGCATGAAAATTAA 29 13 1 GCGAATCGCA 0.777154 -123 TGGGCGACCTCTAGCAATCGGAGGGTGATATT 34 86 0 CTGAATCGGA 0.939455 -191 AGCTGGTAAACGGAGAAAACGGGA 39 3 1 CTGAAACGGA 0.890585 -51 TTACCCAATTCCTGCAATCGGATTTAGCGGCG 54 36 0 CCGAATCGGA 0.987469 -105 GGCTCCAGCAAACCGAAGTGAGTTTA 80 5 1 CCGAAACCGA 0.857265 -279 ** * ******* Masking position 6 Map Score: 8.10529 Number of sites scoring better than the average of aligned sites = 68 Number in coding regions = 63 Number in noncoding regions = 5 Number of orfs with sites within 600 bp upstream = 7 Fraction of orfs with sites within 600 bp upstream = 0.00112432