AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00010_ecoli_reg_300.orf -o00010_ecoli_300.ace -a/home/amcguire/alignace/lib/ORF_ecoli.txt -z/skink1/amcguire/genomes/ecoli.fna -g0.51 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.51 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 pdhR 300 transcriptional regulator for pyruvate dehydrogenase complex #2 aceE 160 pyruvate dehydrogenase (decarboxylase component) #3 lpdA 300 lipoamide dehydrogenase (NADH); component of 2-oxodehydrogenase and pyruvate complexes; L-protein of glycine cleavage complex #4 yadG 108 putative ATP-binding component of a transport system #5 yadI 104 putative PTS enzyme II B component #6 adhC 34 alcohol dehydrogenase class III; formaldehyde dehydrogenase, glutathione-dependent #7 yaiN 166 putative alpha helix chain #8 nagE 300 PTS system, N-acetylglucosamine-specific enzyme IIABC #9 seqA 184 negative modulator of initiation of replication #10 pgm 25 phosphoglucomutase #11 hrsA 108 protein modification enzyme, induction of ompC #12 gpmA 201 phosphoglyceromutase 1 #13 galE 260 UDP-galactose-4-epimerase #14 modF 67 ATP-binding component of molybdate transport system #15 modE 128 molybdate uptake regulatory protein #16 b0968 181 orf, hypothetical protein #17 yccE 260 orf, hypothetical protein #18 agp 292 periplasmic glucose-1-phosphatase #19 yceD 159 orf, hypothetical protein #20 rpmF 51 50S ribosomal subunit protein L32 #21 plsX 110 glycerolphosphate auxotrophy in plsB background #22 fabH 67 3-oxoacyl-[acyl-carrier-protein] synthase III; acetylCoA ACP transacylase #23 acpP 210 acyl carrier protein #24 fabF 87 3-oxoacyl-[acyl-carrier-protein] synthase II #25 pabC 119 4-amino-4-deoxychorismate lyase #26 ptsG 294 PTS system, glucose-specific IIBC component #27 adhE 300 CoA-linked acetaldehyde dehydrogenase and iron-dependent alcohol dehydrogenase; pyruvate-formate-lyase deactivase #28 gapC_1 300 glyceraldehyde 3-phosphate dehydrogenase C, interrupted #29 malX 174 PTS system, maltose and glucose-specific II ABC #30 pykF 300 pyruvate kinase I (formerly F), fructose stimulated #31 pfkB 286 6-phosphofructokinase II; suppressor of pfkA #32 celF 104 phospho-beta-glucosidase; cryptic #33 celC 50 PEP-dependent phosphotransferase enzyme III for cellobiose, arbutin, and salicin #34 celB 84 PEP-dependent phosphotransferase enzyme II for cellobiose, arbutin, and salicin #35 celA 298 PEP-dependent phosphotransferase enzyme IV for cellobiose, arbutin, and salicin #36 osmE 201 activator of ntrL gene #37 gapA 300 glyceraldehyde-3-phosphate dehydrogenase A #38 manX 300 PTS enzyme IIAB, mannose-specific #39 yebK 300 orf, hypothetical protein #40 pykA 127 pyruvate kinase II, glucose stimulated #41 gatB 30 galactitol-specific enzyme IIB of phosphotransferase system #42 gatZ 28 putative tagatose 6-phosphate kinase 1 #43 gatY 197 tagatose-bisphosphate aldolase 1 #44 BIME96 27 BIME #45 b2097 184 orf, hypothetical protein #46 fruB 300 PTS system, fructose-specific IIA/fpr component #47 glk 203 glucokinase #48 ptsH 300 PTS system protein HPr #49 ptsI 44 PEP-protein phosphotransferase system enzyme I #50 crr 40 PTS system, glucose-specific IIA component #51 srlA 255 PTS system, glucitol/sorbitol-specific IIC component, one of two #52 ascF 256 PTS system enzyme II ABC (asc), cryptic, transports specific beta-glucosides #53 eno 87 enolase #54 pyrG 227 CTP synthetase #55 mazG 70 orf, hypothetical protein #56 chpR 77 suppressor of inhibitory function of ChpA, PemI-like, autoregulated #57 relA 47 (p)ppGpp synthetase I (GTP pyrophosphokinase); regulation of RNA synthesis; stringent factor #58 ygcA 56 putative enzyme #59 bglA 38 6-phospho-beta-glucosidase A; cryptic #60 fba 214 fructose-bisphosphate aldolase, class II #61 pgk 49 phosphoglycerate kinase #62 epd 284 D-erythrose 4-phosphate dehydrogenase #63 yggD 21 putative transcriptional regulator #64 cmtA 27 PTS system, mannitol-specific enzyme II component, cryptic #65 cmtB 300 PTS system, mannitol-specific enzyme II component, cryptic #66 tdcC 21 anaerobically inducible L-threonine, L-serine permease #67 tdcB 98 threonine dehydratase, catabolic #68 tdcA 188 transcriptional activator of tdc operon #69 agaZ 248 putative tagatose 6-phosphate kinase 2 #70 BIME157 76 BIME #71 agaS 191 putative tagatose-6-phosphate aldose/ketose isomerase #72 agaB 166 PTS system, cytoplasmic, N-acetylgalactosamine-specific IIB component 1 (EIIB-AGA) #73 yrbG 209 orf, hypothetical protein #74 rpoN 47 RNA polymerase, sigma(54 or 60) factor; nitrogen and fermentation regulation #75 yhbH 22 probable sigma-54 modulation protein #76 ptsN 117 phosphotransferase system enzyme IIA, regulates N metabolism #77 yiaY 189 putative oxidoreductase #78 selA 97 selenocysteine synthase: L-seryl-tRNA (Ser) selenium transferase #79 yibF 227 putative S-transferase #80 mtlA 300 PTS system, mannitol-specific enzyme IIABC components #81 yibO 244 putative 2,3-bisphosphoglycerate-independent phosphoglycerate mutase #82 glvB 24 PTS system, arbutin-like IIB component #83 glvC 34 PTS system, arbutin-like IIC component #84 bglF 133 PTS system beta-glucosides, enzyme II, cryptic #85 bglG 285 positive regulation of bgl operon #86 BIME185 97 BIME #87 pstC 86 high-affinity phosphate-specific transport system, cytoplasmic membrane component #88 pstS 300 high-affinity phosphate-specific transport system; periplasmic phosphate-binding protein #89 frvA 300 PTS system, fructose-specific IIA component #90 b3913 146 orf, hypothetical protein #91 yiiP 148 putative transport system permease protein #92 pfkA 180 6-phosphofructokinase I #93 tpiA 107 triosephosphate isomerase #94 yiiQ 100 orf, hypothetical protein #95 frwC 300 PTS system, fructose-like enzyme II component #96 pflD 50 formate acetyltransferase 2 #97 pgi 300 glucosephosphate isomerase #98 sgaT 291 orf, hypothetical protein #99 fbp 175 fructose-bisphosphatase #100 treB 118 PTS system enzyme II, trehalose specific #101 treR 300 repressor of treA,B,C #102 sgcA 130 putative PTS system enzyme II A component #103 sgcC 286 putative PTS system enzyme IIC component #104 sgcX 300 putative lyase/synthase #105 gpmB 42 phosphoglyceromutase 2 Motif number 1 AAACTATAAAAATCCGAATTGAACCGATTCACTTACCAATTT 1 51 0 ATGAGTTCAC 0.915047 -250 AGGAGCTTACATAAGTAAGTGACTGGGGTGAGGGCGTGAAGC 3 205 1 ATGAGGTGAG 0.848139 -96 GCAAAATAAAAATACGGCTTGAAACGAGCCAAATAGGGTTCT 8 254 1 ATGAGGCCAA 0.564414 -47 TAATGGCGAAAAGCGATGCTGAAAGGTGTCAGCTTTGCAAAA 27 30 1 ATGAGGTCAG 0.982636 -271 ATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGAC 30 73 1 ATGAGTTCAG 0.955072 -228 CTCAAGCCCAAAGGAAGAGTGAGGCGAGTCAGTCGCGTAATG 37 153 1 ATGAGGTCAG 0.982636 -148 GTTATTTTTTTTCATAACATGATCAGTGTCAGATTTTTACCC 39 154 0 TTGAGGTCAG 0.923129 -147 CGTTATCAGCAATTTCATTTCAGCAGCGTCAGCAGCCAATCA 46 56 0 ATCAGGTCAG 0.743845 -245 CAGAAGTATTATGCTTTCTTGAAACGTTTCAGCGCGATCTTG 46 192 1 ATGAGTTCAG 0.955072 -109 TTCTCCTCTCTTGCTGAATTGAAACGATTCAGCCTCTATGAG 46 267 0 TTGAGTTCAG 0.818549 -34 CAAAGCTGAATCGATTTTATGATTTGGTTCAATTCTTCCTTT 48 88 1 TTGAGTTCAA 0.392077 -213 GGCGGGAAAAATATTCAGGTGACCGGTTTCACAAATATAAAA 52 76 1 ATGAGTTCAC 0.915047 -181 TTTTTAAATGACAAGCGCTTGATTTGCGTCAAAAACATTTAC 54 44 1 ATGAGGTCAA 0.889994 -184 AAAGCAGTATACCCGAACATGACCTGTGCCACAAACTTTCAT 54 146 0 ATGAGGCCAC 0.821184 -82 AGGAGCTTACATAAGTAAGTGACTGGGGTGAGCGAACGCAGA 60 123 1 ATGAGGTGAG 0.848139 -92 ACAAAAGGGGATAAAAGTGTGATGTGAGTCAGATAAATGTCT 62 68 1 ATGAGGTCAG 0.982636 -217 TGTCGAACATTTAATCGACTGAAACGCTTCAGCTAGGATAAG 62 149 0 TTGAGTTCAG 0.818549 -136 ACGAAAGATAATGGTTTTCTGATCTGATTCACAAAAGAAACA 69 134 0 ATGAGTTCAC 0.915047 -115 ATAACCACGGATTGTAACGTGAGATGGGTCAGGAGGACATAT 78 17 0 ATGAGGTCAG 0.982636 -81 TAAAAATGGCATTTAAATGTGAGTAGTGTCACATTTTTGTTT 80 26 0 ATGAGGTCAC 0.9663 -275 TTTTTACACAAGCGTTTTGTGATGAACGTCACGTCAATTACC 80 91 1 ATGAAGTCAC 0.646578 -210 AAACCTGAAAAAAATTGCTTGATTCACGTCAGGCCGTTTTTT 84 55 1 ATGAAGTCAG 0.783109 -79 TATAACAATCACTTCCTGCTGAATTGATTCAGGTCAGGCCAA 92 61 0 ATGAGTTCAG 0.955072 -120 GCCGCAAAACAGCGTCTTGTGAGACGCGTCGCAAATTGACGG 95 103 0 ATGAGGTCGC 0.704869 -198 * *** * ***** Masking position 10 Map Score: 26.6779 Number of sites scoring better than the average of aligned sites = 159 Number in coding regions = 133 Number in noncoding regions = 26 Number of orfs with sites within 600 bp upstream = 37 Fraction of orfs with sites within 600 bp upstream = 0.00594282 Motif number 2 CAAATTAAACGCGTGTCTTTTGTGAGTTTT 8 144 0 GCGTGTCTTT 0.767266 -157 GCATGAAACCGCGTCTTTTTTCAGATAAAA 13 79 1 GCGTCTTTTT 0.803607 -182 GTCAAACCTTGCCTGTTTTTGAAGATGTAT 18 168 1 GCCTGTTTTT 0.870126 -125 CTTGTTGAACGCCTGTTTTTCTATATACAT 18 192 0 GCCTGTTTTT 0.870126 -101 GGCAACCACAGGCTGCCTTTTTCTTTGACT 19 108 1 GGCTGCCTTT 0.466271 -52 GTCCGCTTGCGGGCCTTTTTTCTTAGCTTT 25 37 1 GGGCCTTTTT 0.71287 -83 TCCTGAGTATGGGTGCTTTTTTTACGTTCT 26 263 0 GGGTGCTTTT 0.744726 -32 AATATTTTTAGCCTCTTTTTCGGCGTAAAC 28 182 0 GCCTCTTTTT 0.761452 -119 CAACGTGAGTGCCTGTTTTTGAGTCGTTGA 30 123 0 GCCTGTTTTT 0.870126 -178 TAAGTTATTCGCGCCTTTTTATAATTCGTT 31 98 0 GCGCCTTTTT 0.824606 -189 GGAATACATTGGGCGCTTTTTCAAGCCCGT 36 144 0 GGGCGCTTTT 0.770221 -58 GCCGCACTTTGCGCGCTTTTCCCGTAATCG 39 93 0 GCGCGCTTTT 0.8639 -208 AGCAAAGTGCGCGTGTTTTTATGCCGGATG 43 38 0 GCGTGTTTTT 0.895707 -160 CCTATCGGGAGGCCGTTTTTTTGCCTTTCA 43 76 1 GGCCGTTTTT 0.802571 -122 GTCGTTACGGGCGAGTTTTTCCATCTTTTG 45 158 0 GCGAGTTTTT 0.621535 -27 AGCCAGGTTGGCGCTTTTTTTCTCATAGAG 46 246 1 GCGCTTTTTT 0.720039 -55 TTTACAGGGAGCCTGCCTTTCCGGCGTTGT 47 118 1 GCCTGCCTTT 0.623255 -86 TATTGTTAGCGCCAGTTTTTAACAGACGCG 48 211 0 GCCAGTTTTT 0.561619 -90 TTTCCCGGGTTCTTTTAAAAATCAGT 49 7 1 GGGTTCTTTT 0.431937 -38 CCTTGTTTCAGCGCGCTTTTAGAGCACGCA 60 36 1 GCGCGCTTTT 0.8639 -179 AGGTGCTTCGGCGACCTTTTTTATTACCTT 65 16 1 GCGACCTTTT 0.334798 -285 CCCCCGTAAGGCCTTTCTTTTTCTTTCGTT 70 40 1 GCCTTTCTTT 0.401306 -37 TAAGCTGCCCGCCCTTTTTTACACTTTCAG 77 161 1 GCCCTTTTTT 0.667371 -29 ACATAAGAAGGGGTGTTTTT 80 291 1 GGGTGTTTTT 0.819342 -10 ATTCACGTCAGGCCGTTTTTTTCAGGTTTT 84 76 1 GGCCGTTTTT 0.802571 -58 TGGTGAAGTCGGGTTTTTTTGTTTATAAAA 85 254 1 GGGTTTTTTT 0.541719 -32 GACCGACCGAGCGCCTTTTTGACTCTGTAC 86 65 1 GCGCCTTTTT 0.824606 -33 CATGCTGTGGGGGTTTTTTTTATCCTCAAT 91 57 1 GGGTTTTTTT 0.541719 -92 ATGCGGGTCTGGCTCTCTTTTATACTGA 92 9 0 GGCTCTCTTT 0.392857 -172 TTTCCGGTAAGCCCGTCTTTTCACGGCGTT 101 53 0 GCCCGTCTTT 0.747153 -248 ATTATTTGCGGCGCTTTTTTCACTTACCGG 101 134 0 GCGCTTTTTT 0.720039 -167 AATGCCTCCTTTTATTGAGTTAA 103 274 0 GCCTCCTTTT 0.672483 -13 ********** Masking position 8 Map Score: 27.4056 Number of sites scoring better than the average of aligned sites = 841 Number in coding regions = 657 Number in noncoding regions = 184 Number of orfs with sites within 600 bp upstream = 158 Fraction of orfs with sites within 600 bp upstream = 0.0253774 Motif number 3 GGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCAC 13 18 0 GCCGCCGGCA 0.987922 -243 GACTATTCTAACCGCTAAGCACAGAAAAGCACT 15 35 1 ACCGCGCACA 0.874709 -94 TGGCATATCTGCCCCCCCGGACATAAATAATCC 32 50 0 GCCCCGGACA 0.739513 -55 GTATGTTTACACCGCATCCGGCATAAAAACACG 43 24 1 ACCGCCGGCA 0.968793 -174 GACCAGACCTGCCGAAATCGGCAAATCGCAA 57 9 0 GCCGACGGCA 0.812154 -39 CGCACAACAGACCGCCATGCACATGCTAATTGC 76 19 0 ACCGCGCACA 0.874709 -99 GGCTGTATTTGCCGCACCGCGCAGGTATACTCC 81 55 0 GCCGCGCGCA 0.984611 -190 CTTTTTTTTCGTCGCGCCCCGCAAAATTGCATT 81 102 0 GTCGCCCGCA 0.822323 -143 AAAATATACGACCGCTCGCGGCAAGCCGATGCC 81 144 0 ACCGCCGGCA 0.968793 -101 GGTGTTTTACGCCGCATCCGGCATTACAAAATG 87 31 1 GCCGCCGGCA 0.987922 -56 GAAGATGGCCGCCCCGCAGGGCAGCAGGTCTGT 93 54 0 GCCCCGGGCA 0.908059 -54 ATCGTTGACAACCGCCCCGCTCACCCTTTATTT 97 99 0 ACCGCGCTCA 0.842807 -202 GATTAAATGTGACGCGACCCGCAAATAATTCCA 98 228 0 GACGCCCGCA 0.822323 -64 TGCGATCCCTGCCGCCTTCGTCAAAAGTATCGA 102 60 1 GCCGCCGTCA 0.947525 -71 ACATGCCGGTACCGCATGCCACAAGGATCTTTT 103 11 0 ACCGCCCACA 0.899228 -276 GCTTAATGGCGCCGCCCTGCTCACAGGGATCAA 103 207 1 GCCGCGCTCA 0.933893 -80 ***** ***** Masking position 13 Map Score: 18.4426 Number of sites scoring better than the average of aligned sites = 1207 Number in coding regions = 945 Number in noncoding regions = 262 Number of orfs with sites within 600 bp upstream = 113 Fraction of orfs with sites within 600 bp upstream = 0.0181497 Motif number 4 TCGCCTACCTGCTGAAACATGATTCAAACT 28 84 1 GCTGAAACAT 0.685045 -217 CGCGCAATTTACTGAATCCAGATTGTTCTC 29 139 1 ACTGAATCCA 0.464453 -36 AGTCCAAAGTGCTGAAACCATTCAAGAGTC 30 86 0 GCTGAAACCA 0.803512 -215 ACCCGTTGCTACTGAAACGACAAGCGACAG 36 53 1 ACTGAAACGA 0.904857 -149 TACTCCGTTGACTGAAACAACCAGGTGTTG 40 104 0 ACTGAAACAA 0.736048 -24 CATTTTTTCTGATGAATCGAGCCAACAGAA 45 111 1 GATGAATCGA 0.601376 -74 TTCCTTGCGTGCTGAAACAGAAGTATTATG 46 175 1 GCTGAAACAG 0.724259 -126 ACAAGATCGCGCTGAAACGTTTCAAGAAAG 46 205 0 GCTGAAACGT 0.881209 -96 TCTCATAGAGGCTGAATCGTTTCAATTCAG 46 266 1 GCTGAATCGT 0.802922 -35 TGCAATTGGTGCTGAAACGATAAAGTAATT 47 70 1 GCTGAAACGA 0.960983 -134 GTTCCGACAGGCTGAATCAA 48 1 0 GCTGAATCAA 0.798638 -300 AAAAGCCAAAGCTGAATCGATTTTATGATT 48 82 1 GCTGAATCGA 0.931162 -219 AAATGCCGATGCTGAAACGGAATTAAGAAA 52 178 0 GCTGAAACGG 0.899579 -79 CTAAAAGCGCGCTGAAACAAGGGCAGGTTT 60 28 0 GCTGAAACAA 0.878369 -187 GCTTATCCTAGCTGAAGCGTTTCAGTCGAT 62 148 1 GCTGAAGCGT 0.519718 -137 GGCAAAACGAAATGAAACGAAAGTTTTACG 69 23 0 AATGAAACGA 0.514728 -226 AATGAAAGTCACTGAAACGAGAGTAGCTTG 69 103 0 ACTGAAACGA 0.904857 -146 CGCAGTATCAACTGAAACAAAACGAAAGAT 69 197 1 ACTGAAACAA 0.736048 -52 CACCAAGTGAAATGAAACGAAAGGCAAGTG 71 125 1 AATGAAACGA 0.514728 -67 GAAATCTGGCACTGAATCGGTTAACTGTCC 80 184 0 ACTGAATCGG 0.655146 -117 TTTTACTACAGCTGAATCGATAAAATAGCC 81 187 0 GCTGAATCGA 0.931162 -58 ********** Masking position 3 Map Score: 18.7319 Number of sites scoring better than the average of aligned sites = 249 Number in coding regions = 213 Number in noncoding regions = 36 Number of orfs with sites within 600 bp upstream = 47 Fraction of orfs with sites within 600 bp upstream = 0.00754899 Motif number 5 CGTCTTTCAGGCCGCAGCGGCGTTAGCTTCACG 3 239 0 GCCGACGGCT 0.933578 -62 CCGCCCGCTATCCGGGGCGGCCTTCCCTGCCGA 7 20 1 TCCGGCGGCT 0.663903 -147 GCTGACCTTGCCGGAGGCGGCCTTAGCACCCTC 13 20 1 CCGGGCGGCT 0.958049 -241 TGACTTTTTTCCGGGAACAGGTTCGCAAAATGG 18 222 0 CCGGACAGGT 0.684794 -71 TTTCGTAATACCGGATTCGCTTTCCGGCAGTGC 30 226 1 CCGGTCGCTT 0.795663 -75 AAGAAAGTTTCCGGGACCGCGATGGTCTCTTTT 31 34 0 CCGGACGCGT 0.776013 -253 GGCACGATTACCCGTACCGGCATCGA 33 4 0 CCCGACGGCT 0.980752 -47 TGTTTTTATGCCGGATGCGGTGTAAACATACGT 43 22 0 CCGGTCGGTT 0.931728 -176 GTAGTCACTGCCCGATACGGACTTTACATAACT 51 80 1 CCCGTCGGAT 0.793602 -176 GTTTCTTAATTCCGTTTCAGCATCGGCATTTTT 52 177 1 TCCGTCAGCT 0.479398 -80 AAAAAAGGTCGCCGAAGCACCTTTTTA 65 5 0 GCCGACACCT 0.417762 -296 AAATTAAGCATCCGTTACGGCTTTCTGAAAATC 73 147 1 TCCGTCGGCT 0.837314 -63 AAGCGTAAATCTGGCATCGGCTTGCCGCGAGCG 81 132 1 CTGGACGGCT 0.740043 -113 AAACTCCAGGCCGGGTACGGTGTTTTACGCCGC 87 13 1 CCGGTCGGTT 0.931728 -74 TTTTGTAATGCCGGATGCGGCGTAAAACACCGT 87 29 0 CCGGTCGGCT 0.983472 -58 AAGAAGACTTCCGGCAACAGATTTCATTTTGCA 92 137 1 CCGGACAGAT 0.584115 -44 TCCCGGTACGGTTTTCTGTTTACA 95 2 1 CCCGTCGGTT 0.898359 -299 ATAAGAGCGCACGGCAACGGCCTGCCATGTGAC 95 37 1 ACGGACGGCT 0.806152 -264 TTTCGCAAGCCCGGGAGCAGCTT 95 288 1 CCGGACAGCT 0.933673 -13 GCTCGCAAGGGCGGGTTCGCTTTCCCACAGGAG 96 22 1 GCGGTCGCTT 0.517859 -29 CCTTACGCATCCGGTAACGCCGTGAAAAGACGG 101 38 1 CCGGACGCCT 0.957347 -263 ACCAGATTAACCCGAATCGGCATGGAGTCAACG 102 104 1 CCCGACGGCT 0.980752 -27 CTTGTGGCATGCGGTACCGGCATGTCGACTTCA 103 19 1 GCGGACGGCT 0.955952 -268 **** * **** * Masking position 13 Map Score: 19.1134 Number of sites scoring better than the average of aligned sites = 1357 Number in coding regions = 1077 Number in noncoding regions = 280 Number of orfs with sites within 600 bp upstream = 119 Fraction of orfs with sites within 600 bp upstream = 0.0191134 Motif number 6 CCCCCCCCCCTTTCCTCTTTGTTTTCCGACCACATTCAC 7 57 1 TTTCTTTTCA 0.388449 -110 GTATTTTTATTTTGCTGCAAATTGTACTGCCGATGTTCT 8 230 0 TTTCTTTGCG 0.651831 -71 ACAAATAAGGTTTATTCCGAGTTTTTCTGCAAGCCAGGC 9 78 1 TTTTTTTTCG 0.936332 -107 TTTCTTAGCTTTTATTCCGACTTGTTCCGTAGTGAACAT 25 55 1 TTTTTTTGCG 0.869408 -65 CCACGGAATATTTTTAGCCTCTTTTTCGGCGTAAACCGC 28 179 0 TTTTATTTCG 0.442118 -122 CGTTTTACCTTTTATTTATCTTATACCCGCTATTATCGT 29 48 1 TTTTTTATCG 0.452502 -127 TTATTGGAGCTTTATTTAAAATTTTGCAGATAAATATAT 31 188 0 TTTTTTTTCG 0.936332 -99 TTTATTTTAAATTTTCCCGTCAAAGAGTT 34 1 1 TTTTTTTTCG 0.936332 -84 GACCTTATAAATTGTTTCTCCTTGACCTGTGGTTATGAC 35 121 0 ATTTTTTGCG 0.368894 -178 AAACGATGATTTTTTTATCAGTTTTGCCGCACTTTGCGC 39 109 0 TTTTTTTTCG 0.936332 -192 TGCTGCACAATTTTTTGCCATTTTTCCTAATTGCTGATG 46 106 0 TTTTTTTTCA 0.693132 -195 GTGAGAAAGAATTATTTTGACTTTAGCGGAGCAGTTGAA 47 173 1 ATTTTTTTCG 0.563551 -31 AATTAAAATATTTATCTTTCATTTTGCGATCAAAATAAC 51 152 1 TTTTCTTTCA 0.32596 -104 AAACATTCCTTTTATTCCACGTTTCGCTTATCCTAGCTG 62 123 1 TTTTTTTTCT 0.495615 -162 GGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGT 70 49 1 TTTTTTTGCG 0.869408 -28 CAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTC 71 49 1 TTTTTTTTCA 0.693132 -143 AAGCTGGCATTTGTTTTACTTTTTAGCCGCATAAAGTCA 73 108 1 TTGTTTTTCG 0.511132 -102 ACCATCAACATTTTCTGCCCTTTTTCCCATCACCAGGCC 79 165 1 TTTCTTTTCA 0.388449 -63 AAGCCCGAGGTTTTTTGTTAATGTGGCGGCAGAGGTAGC 80 233 0 TTTTTTGTCG 0.811786 -68 ATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGG 84 39 0 TTTTTTTTCG 0.936332 -95 TTTTCAGGTTTTTTTTTGGAGTTTTGCCGCAAAGCGGTA 84 94 1 TTTTTTTTCG 0.936332 -40 ATTTTTGTGATTTACTCACAATGTATCAGGGAAATATAA 89 94 0 TTTCTTGTCG 0.548105 -207 GGGGGTTTTTTTTATCCTCAATTTGCCTGCTGCTTAATG 91 65 1 TTTTCTTTCG 0.758957 -84 GACAGTACCTTTTGTTATGACTGGCTCCGATTAAAACGA 94 71 0 TTTTTTGGCG 0.661302 -30 TTACATTACATTTGTCCAGCTTTTGGCAGATTTGTCACA 95 64 0 TTTTCTTTCG 0.758957 -237 GCAATGACCATTTTTTGACTTTTTGCCAGGGAAGTTGTT 98 86 1 TTTTTTTTCG 0.936332 -206 ATTGAGATTATTTGTTAAGATTGTTGCGGTCGCTTTACT 99 122 1 TTTTTTGTCG 0.811786 -54 TAATTTTTTATTTGTTCAGCTTTGCGCGTTTTCACGTGA 104 223 1 TTTTTTTGCT 0.307871 -78 *** ** *** * * Masking position 12 Map Score: 17.9554 Number of sites scoring better than the average of aligned sites = 184 Number in coding regions = 128 Number in noncoding regions = 56 Number of orfs with sites within 600 bp upstream = 62 Fraction of orfs with sites within 600 bp upstream = 0.00995824 Motif number 7 CGTCTTTCAGGCCGCAGCGGCGTTAGCTTCA 3 241 0 GCCCAGCGGC 0.491245 -60 GGCAGGGAAGGCCGCCCCGGATAGCGGGCGG 7 20 0 GCCCCCCGGA 0.907699 -147 TGAATAAATCCCGGCAGCGGATAGCGTCAAG 9 116 0 CCGCAGCGGA 0.762582 -69 GGTGCTAAGGCCGCCTCCGGCAAGGTCAGCA 13 19 0 CCGCTCCGGC 0.940865 -242 GGCCTTAGCACCCTCTCCGGCCAACGGTTCG 13 38 1 CCCCTCCGGC 0.899117 -223 GCGGGCAACGGCCCCGGAAAAGACCCAC 16 8 1 ACGCCCCGGA 0.536311 -174 CGGTTATATACCGTCACTTGCAAACTGCGAG 22 29 0 CCGCACTTGC 0.351499 -39 ATCATTTTTTCCCTCCCTGGAGGACAAAC 24 69 1 CCCCCCTGGA 0.721589 -19 GAAAAAAGGCCCGCAAGCGGACCTTTTATAA 25 28 0 CCGAAGCGGA 0.504718 -92 AGAGACCATCGCGGTCCCGGAAACTTTCTTA 31 37 1 GCGTCCCGGA 0.901018 -250 TCAAAGATTAGCGTCCCTGGAAAGGTAACGA 31 72 1 GCGCCCTGGA 0.787815 -215 TGGCATATCTGCCCCCCCGGACATAAATAAT 32 52 0 GCCCCCCGGA 0.907725 -53 GGCACGATTACCCGTACCGGCATCGA 33 6 0 CCCTACCGGC 0.872063 -45 TTAATTTATCGCCATCGCGGCGTTATTTCAT 40 55 1 GCCTCGCGGC 0.810453 -73 TATGTTTACACCGCATCCGGCATAAAAACAC 43 25 1 CCGATCCGGC 0.83465 -173 GAAAAAAAGCGCCAACCTGGCTTAGGGTTAA 46 237 0 GCCACCTGGC 0.620688 -64 CAGGGAGCCTGCCTTTCCGGCGTTGTTGTTA 47 122 1 GCCTTCCGGC 0.787576 -82 CTTGATATGTCCGTTTGCGGACAAGCAATAG 65 43 1 CCGTTGCGGA 0.530188 -258 GTAACCGTAACCGACACCTGCAAGACAGACA 67 45 0 CCGCACCTGC 0.719378 -54 AAATATACGACCGCTCGCGGCAAGCCGATGC 81 145 0 CCGTCGCGGC 0.905163 -100 AAATTAATTTCCGAACCTGGATGTTCGTTAT 85 154 1 CCGACCTGGA 0.594788 -132 GCGTAAAACACCGTACCCGGCCTGGAGTTTT 87 12 0 CCGACCCGGC 0.945102 -75 GTGTTTTACGCCGCATCCGGCATTACAAAAT 87 32 1 CCGATCCGGC 0.83465 -55 GGAAAGCGAACCCGCCCTTGCGAGCGGGAGA 96 16 0 CCCCCCTTGC 0.412412 -35 TCTTTTCACGGCGTTACCGGATGCGTAAGGC 101 37 0 GCGTACCGGA 0.797488 -264 TAACCCTTCTGCGATCCCTGCCGCCTTCGTC 102 51 1 GCGTCCCTGC 0.711407 -80 CTTGTGGCATGCGGTACCGGCATGTCGACTT 103 19 1 GCGTACCGGC 0.907104 -268 ACAGCATTGGGCGGTAGTGGCTGAAATGCCC 103 93 0 GCGTAGTGGC 0.411766 -194 *** ******* Masking position 2 Map Score: 19.2669 Number of sites scoring better than the average of aligned sites = 3118 Number in coding regions = 2758 Number in noncoding regions = 360 Number of orfs with sites within 600 bp upstream = 203 Fraction of orfs with sites within 600 bp upstream = 0.0326052 Motif number 8 GGCAGGGAAGGCCGCCCCGGATAGCGGGCG 7 21 0 GCCGCCCCGG 0.849313 -146 ACGGAAAACGAACGCCACGCAAAGCTGACC 15 80 0 AACGCCACGC 0.690846 -49 AGGTATCGTCGCCGCCCGGTTTGGTCTTTC 21 62 0 GCCGCCCGGT 0.679293 -49 GCAAATCATCACCGCACTGACTATACTCTC 27 229 1 ACCGCACTGA 0.453055 -72 TTGCTTTCTGGGCGCACTGCCGGAAAGCGA 30 242 0 GGCGCACTGC 0.747821 -59 ACATGGGGTCGGCGCCCCGAATTTTAAAGG 37 120 0 GGCGCCCCGA 0.88938 -181 AAATCAAAAGCGCCACGAATAGTCAAAA 46 9 1 AGCGCCACGA 0.678725 -292 CTAAAGTCGAACCGCCAGGCTAGACTTTAG 48 245 1 ACCGCCAGGC 0.908876 -56 GGTAAAGCATCACGCCCCGCACAAGGAAGC 51 49 1 CACGCCCCGC 0.721475 -207 TTTTTAGGGTACCGTCCGGCGGTAAAAATA 65 264 0 ACCGTCCGGC 0.737472 -37 GGTTAAATTGAGCGCCATGCTTAGAAAATC 73 33 0 AGCGCCATGC 0.826861 -177 CGCACAACAGACCGCCATGCACATGCTAAT 76 22 0 ACCGCCATGC 0.881412 -96 GGCTGTATTTGCCGCACCGCGCAGGTATAC 81 58 0 GCCGCACCGC 0.916138 -187 TTTTTTTCGTCGCGCCCCGCAAAATTGCAT 81 103 0 CGCGCCCCGC 0.929352 -142 AAGGAAGATGGCCGCCCCGCAGGGCAGCAG 93 60 0 GCCGCCCCGC 0.985297 -48 ACAGGATAAGAGCGCACGGCAACGGCCTGC 95 32 1 AGCGCACGGC 0.793236 -269 ATCGTTGACAACCGCCCCGCTCACCCTTTA 97 102 0 ACCGCCCCGC 0.984801 -199 TGAACTACTGACCGCCAGGAGTGGATGAAA 97 147 0 ACCGCCAGGA 0.649961 -154 GCTTAATGGCGCCGCCCTGCTCACAGGGAT 103 207 1 GCCGCCCTGC 0.965812 -80 ATGAAGAGGGAGCGTCCTGCAACAAAGTGG 104 80 1 AGCGTCCTGC 0.576962 -221 ********** Masking position 4 Map Score: 15.3875 Number of sites scoring better than the average of aligned sites = 1626 Number in coding regions = 1560 Number in noncoding regions = 66 Number of orfs with sites within 600 bp upstream = 80 Fraction of orfs with sites within 600 bp upstream = 0.0128493 Motif number 9 TAGCTTCACGCCCTCACCCCAGTCACTTAC 3 219 0 CCCTCACCCC 0.975349 -82 GGCTATTTCCTCTCCTCTGGATTTGGG 5 8 1 TCCTCTCCTC 0.886726 -97 CCGTCAAAACTCCTCTCCCCCAAATCCAGA 5 26 0 TCCTCTCCCC 0.957717 -79 TAGCCCCCCCCCCTTTCCTCTTTGTTTTCC 7 54 1 CCCTTTCCTC 0.765998 -113 TGCTGCTCTCCTTATCCTTAATG 16 169 0 TGCTCTCCTT 0.51395 -13 GATGGCGACCTCCTCTCCGCGATGATTTCA 17 119 0 TCCTCTCCGC 0.706633 -142 TATCAAAAATCGCTCACCCTTTTTCACCTG 17 176 0 CGCTCACCCT 0.842382 -85 TTATTTTGAGGCCTTACCCCCCAATAACGC 23 85 0 GCCTTACCCC 0.623245 -126 TACACGGCGAGGCTCTCCCCCCTTGCCACG 26 229 1 GGCTCTCCCC 0.904327 -66 AACCCTTTCCTCAAACCGCTAT 56 66 0 CCCTTTCCTC 0.765998 -12 CGTCCTCTCCTTTAGGGACCAG 57 36 0 TCCTCTCCTT 0.712938 -12 CGTCTGCGTTCGCTCACCCCAGTCACTTAC 60 137 0 CGCTCACCCC 0.943964 -78 TTACTCTCTCCTCTACAGGATAA 64 4 1 CTCTCTCCTC 0.6175 -24 CACGGTTTTCCCCTCACCCTAACCCTCTCC 86 20 1 CCCTCACCCT 0.926214 -78 CTCACCCTAACCCTCTCCCCAGAGGGGCGA 86 32 1 CCCTCTCCCC 0.986095 -66 TCGGTCGGTCCCCTCGCCCCTCTGGGGAGA 86 45 0 CCCTCGCCCC 0.924095 -53 ACAACCGCCCCGCTCACCCTTTATTTATAA 97 95 0 CGCTCACCCT 0.842382 -206 CTGATCCCACGCCTCTCCCTCGACGGAGAT 101 90 0 GCCTCTCCCT 0.875676 -211 ********** Masking position 4 Map Score: 13.6514 Number of sites scoring better than the average of aligned sites = 273 Number in coding regions = 147 Number in noncoding regions = 126 Number of orfs with sites within 600 bp upstream = 65 Fraction of orfs with sites within 600 bp upstream = 0.0104401 Motif number 10 AATGATTTTTCGCGCCCTTTGGCTAACACT 16 54 1 CGCGCCCTTT 0.959677 -128 AGGGCATCTAAGCGCCCTTTATTTATTACA 26 198 0 AGCGCCCTTT 0.909221 -97 TTTATCTTCTCGCGCAATTTACTGAATCCA 29 129 1 CGCGCAATTT 0.884412 -46 GCGTATAATGCGCGCCAATTGACTCTTGAA 30 66 1 CGCGCCAATT 0.761339 -235 CTAAGTTATTCGCGCCTTTTTATAATTCGT 31 99 0 CGCGCCTTTT 0.889405 -188 ACCCTTAAAAACCGCAATTTAAATATTGCG 34 57 0 ACCGCAATTT 0.546625 -28 CATAAAAACACGCGCACTTTGCTACGGCTT 43 45 1 CGCGCACTTT 0.848907 -153 CTGTATTGTTAGCGCCAGTTTTTAACAGAC 48 214 0 AGCGCCAGTT 0.665518 -87 TACGCGGTCAAGCGCCATTTGTGTCATTTT 54 17 1 AGCGCCATTT 0.931693 -211 ACCTGACAGACCCGCAATTTTCAGGACAAT 55 48 1 CCCGCAATTT 0.741269 -23 TGCGGCACAACGGGCCATTTGTACGGTTAA 76 48 1 CGGGCCATTT 0.731047 -70 CAGTAAGCTGCCCGCCCTTTTTTACACTTT 77 158 1 CCCGCCCTTT 0.899109 -32 GGACCGACCGAGCGCCTTTTTGACTCTGTA 86 64 1 AGCGCCTTTT 0.771915 -34 TGTATAAAATACCGCCATTTGGCCTGACCT 92 43 1 ACCGCCATTT 0.836262 -138 ACCTGCCACGCGCCATTACATTCTAAGA 104 9 1 CGCGCCATTA 0.747928 -292 ********** Masking position 9 Map Score: 10.2301 Number of sites scoring better than the average of aligned sites = 651 Number in coding regions = 582 Number in noncoding regions = 69 Number of orfs with sites within 600 bp upstream = 63 Fraction of orfs with sites within 600 bp upstream = 0.0101189 Motif number 11 GGATTGACGCCTGTCTGCGCAAATCCAGGT 8 36 0 CTGTCTGCGC 0.840195 -265 TTCCATGTCACACTTTTCGCATCTTTGTTA 13 200 1 CACTTTTCGC 0.809661 -61 CATAACCACGCAGACTGCGCGCAACATGAG 23 30 0 CAGACTGCGC 0.890526 -181 ATGATTTCTGCACCTTTCGCTTTCCACGGA 28 211 0 CACCTTTCGC 0.799121 -90 AAATAAAAATCTGTTTTCGCCACATGCTTA 31 156 0 CTGTTTTCGC 0.735119 -131 TAAGCGTTTACAGTTTTCGCAAGCTCGTAA 39 53 0 CAGTTTTCGC 0.931451 -248 AGTTTTGCCGCACTTTGCGCGCTTTTCCCG 39 99 0 CACTTTGCGC 0.887745 -202 CAATCAGTCGCAGTTTGCGACAGGTAAGGT 62 197 1 CAGTTTGCGA 0.624609 -88 AAACAAATGCCAGCTTTCGCTAACCACGGC 73 94 0 CAGCTTTCGC 0.927048 -116 GATTCAGTGCCAGATTTCGCAGTATCTACA 80 196 1 CAGATTTCGC 0.811103 -105 CTCGGGCTTCCAGCCTGCGCGACAGCAAAC 80 263 1 CAGCCTGCGC 0.960118 -38 GCGGCAAATACAGCCAGCGCGTTAACTGGA 81 73 1 CAGCCAGCGC 0.719249 -172 ATTATTCGACCAGTCTGCGCCTATAAAACG 104 273 1 CAGTCTGCGC 0.962605 -28 ********** Masking position 8 Map Score: 6.49136 Number of sites scoring better than the average of aligned sites = 525 Number in coding regions = 506 Number in noncoding regions = 19 Number of orfs with sites within 600 bp upstream = 25 Fraction of orfs with sites within 600 bp upstream = 0.00401542 Motif number 12 TACGTTTAGTTGCCGCGCTTTTATATGCGC 2 54 0 TGCCGCGCTT 0.87791 -107 TTCCTTCTGCCGCCCGCTATCCGGGGC 7 8 1 TGCCGCCCGC 0.702078 -159 CGGTCAGCTTTGCGTGGCGTTCGTTTTCCG 15 79 1 TGCGTGGCGT 0.571824 -50 TCCATGGATTTGCAACGCGTCCATTAAGGA 16 148 1 TGCAACGCGT 0.83199 -34 GATTAGCCCCTGCCTCGCGTACGCCGCTGA 18 125 0 TGCCTCGCGT 0.938734 -168 TCTCCCCCCTTGCCACGCGTGAGAACGTAA 26 242 1 TGCCACGCGT 0.957324 -53 AAAGTGGTGGTGCCTCGCTCTAAGGATAGG 30 199 0 TGCCTCGCTC 0.732636 -102 GCGCTCTTCGTGCGTCGCGTCTGTTAAAAA 48 196 1 TGCGTCGCGT 0.896408 -105 CGCTTCCTTGTGCGGGGCGTGATGCTTTAC 51 50 0 TGCGGGGCGT 0.757834 -206 AAGTTAGAGCGGCAACGCGTACCCTGGGTA 53 17 1 GGCAACGCGT 0.536122 -71 GGCATCGGCTTGCCGCGAGCGGTCGTATAT 81 144 1 TGCCGCGAGC 0.613901 -101 GGAAGAAAAATGCCCCGCTTACGCA 88 6 0 TGCCCCGCTT 0.580252 -295 GGCAGGCCGTTGCCGTGCGCTCTTATCCTG 95 33 0 TGCCGTGCGC 0.644648 -268 ACCGTCAATTTGCGACGCGTCTCACAAGAC 95 102 1 TGCGACGCGT 0.92684 -199 CCGTTACTTGGGCAACGCGCCTCTTCTGGC 97 42 1 GGCAACGCGC 0.507883 -259 CCTTATTATTTGCGGCGCTTTTTTCACTTA 101 138 0 TGCGGCGCTT 0.802407 -163 ACCTGCCACGCGCCATTACATTC 104 4 1 TGCCACGCGC 0.952452 -297 ********** Masking position 2 Map Score: 7.80476 Number of sites scoring better than the average of aligned sites = 1121 Number in coding regions = 1049 Number in noncoding regions = 72 Number of orfs with sites within 600 bp upstream = 62 Fraction of orfs with sites within 600 bp upstream = 0.00995824 Motif number 13 AGCGCCAGAATCCCCAGGAGCTTACATAAG 3 190 1 TCCCCAGGAG 0.969789 -111 TGAATACAAGTCGCCAGGAGTATATGAATA 9 141 0 TCGCCAGGAG 0.956013 -44 GGTCGAACGACCGCCTGGAGATGTTCAC 24 9 0 CCGCCTGGAG 0.972049 -79 CATTTTTTCCCTCCCTGGAGGACAAAC 24 71 1 CTCCCTGGAG 0.89806 -17 TACGGACCATTCCCCTGGAGCGTTGATTTT 28 113 1 TCCCCTGGAG 0.956385 -188 AGAGAGTGAATCCCCAGGAGCTTACATAAG 60 108 1 TCCCCAGGAG 0.969789 -107 ACACCGTACCCGGCCTGGAGTTTTA 87 6 0 CGGCCTGGAG 0.852009 -81 TTTATGAATCCTCCCAGGAGACATT 88 286 1 CTCCCAGGAG 0.924405 -15 GGTTCGCTTTCCCACAGGAGTTCCTC 96 35 1 CCCACAGGAG 0.867953 -16 GAACTACTGACCGCCAGGAGTGGATGAAAA 97 146 0 CCGCCAGGAG 0.980736 -155 ********** Masking position 9 Map Score: 10.731 Number of sites scoring better than the average of aligned sites = 46 Number in coding regions = 37 Number in noncoding regions = 9 Number of orfs with sites within 600 bp upstream = 10 Fraction of orfs with sites within 600 bp upstream = 0.00160617 Motif number 14 ATAGCGTCAAGCCTGGCTTGCAGAAAAACTC 9 96 0 GCCGGCTTGC 0.885667 -89 AAAAGGCAACCACAGGCTGCCTTTTTCTTTG 19 104 1 CACGGCTGCC 0.864389 -56 CCGGCGCAATGGCCGGTTTCCGTTGTTACTC 35 30 0 GGCGGTTTCC 0.88325 -269 TTAACCCTAAGCCAGGTTGGCGCTTTTTTTC 46 237 1 GCCGGTTGGC 0.755201 -64 CAGTGTACTGCACCGTTTGCCGATTGTCCTT 52 37 1 CACGTTTGCC 0.654292 -220 CTATTCTGGTCACAGGTTTCCACCTGACAGA 55 27 1 CACGGTTTCC 0.943315 -44 CTGAAACAAGGGCAGGTTTCCCTGCCCTGTG 60 16 0 GGCGGTTTCC 0.883244 -199 GTTTTCAAAACACCGGTTTCCCTGCTCAATT 65 207 1 CACGGTTTCC 0.943315 -94 GCCTTGATCAGCCAGGTTTCCT 78 86 1 GCCGGTTTCC 0.9446 -12 AACAAAAAACCTCGGGCTTCCAGCCTGCGCG 80 253 1 CTCGGCTTCC 0.800861 -48 TACCCGGGCTTGCAGGCAAAAAA 83 22 0 CCCGGCTTGC 0.943514 -13 TATTGCTGACACGGTTTTCCCCTCACCCTA 86 10 1 CACGTTTTCC 0.828766 -88 TAAACCCTGTTTTCCTTGCCATAGA 91 5 1 CCCGTTTTCC 0.914476 -144 TAGACACCATCCCTGTCTTCCCCCACATGCT 91 32 1 CCCGTCTTCC 0.912849 -117 TCTCACAAGACGCTGTTTTGCGGCATGCTTC 95 121 1 CGCGTTTTGC 0.68753 -180 AAGCTGCTCCCGGGCTTGCGAAAGCCCAT 95 282 0 CCCGGCTTGC 0.943514 -19 *** ******* Masking position 8 Map Score: 10.6013 Number of sites scoring better than the average of aligned sites = 417 Number in coding regions = 382 Number in noncoding regions = 35 Number of orfs with sites within 600 bp upstream = 40 Fraction of orfs with sites within 600 bp upstream = 0.00642467 Motif number 15 TTGTTGCAGCCCTGTGGCACAATGGTCAACA 9 51 0 CTGTGGCACA 0.73194 -134 TGGCGTTCGTTTTCCGTCACAATAAGACTTT 15 93 1 TTCCGTCACA 0.897485 -36 TCAGGCATAGTTTGCGTCAAACCTTGCCTGT 18 153 1 TTGCGTCAAA 0.709363 -140 AAAAGTCATATTTCTGTCACACTCTTTAGTG 18 247 1 TTCTGTCACA 0.863722 -46 TAAAACGTTTTATCTGTCACATAATCAGGGA 29 24 0 TTCTGTCACA 0.863723 -151 CCTCTTCACATTTCGGGCAAATAATTCGCGA 35 90 0 TTCGGGCAAA 0.643956 -209 TAAATATCGATCTGGGTCACACAATTACTTT 47 91 0 TTGGGTCACA 0.731164 -113 AAGCGCTTGATTTGCGTCAAAAACATTTACC 54 56 1 TTGCGTCAAA 0.709363 -172 ATAATGAAAGTTTGTGGCACAGGTCATGTTC 54 143 1 TTGTGGCACA 0.909301 -85 TGGATTACTCTGTCTGGCAAATTTGCTCAGG 62 244 1 TTCTGGCAAA 0.787208 -41 GGCGGTCTGTTGTGCGGCACAACGGGCCATT 76 36 1 TTGCGGCACA 0.813267 -82 CCTCTACCGCTTTGCGGCAAAACTCCAAAAA 84 106 0 TTGCGGCAAA 0.776972 -28 GGCTACTTTTTCTCTGTCACAGAATGAAAAT 88 91 1 TTCTGTCACA 0.863723 -210 GCCGGAGGCATCTCTGGCACATTGGGCAA 89 9 0 TTCTGGCACA 0.920544 -292 GCCAGAGATGCCTCCGGCACAATATTTTAAA 89 22 1 CTCCGGCACA 0.811219 -279 * ********* Masking position 9 Map Score: 8.11042 Number of sites scoring better than the average of aligned sites = 134 Number in coding regions = 102 Number in noncoding regions = 32 Number of orfs with sites within 600 bp upstream = 28 Fraction of orfs with sites within 600 bp upstream = 0.00449727