AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00051_ecoli_reg_300.orf -o00051_ecoli_300.ace -a/home/amcguire/alignace/lib/ORF_ecoli.txt -z/skink1/amcguire/genomes/ecoli.fna -g0.51 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.51 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 yabB 300 orf, hypothetical protein #2 yadG 108 putative ATP-binding component of a transport system #3 yadI 104 putative PTS enzyme II B component #4 rpsB 300 30S ribosomal subunit protein S2 #5 tsf 257 protein chain elongation factor EF-Ts #6 pyrH 146 uridylate kinase #7 frr 291 ribosome releasing factor #8 yaeM 91 putative ATP-binding component of a transport system #9 yaeS 185 orf, hypothetical protein #10 cdsA 120 CDP-diglyceride synthetase #11 yaeT 29 orf, hypothetical protein #12 hlpA 121 histone-like protein, located in outer membrane or nucleoid #13 fabZ 104 (3R)-hydroxymyristol acyl carrier protein dehydratase #14 nagE 300 PTS system, N-acetylglucosamine-specific enzyme IIABC #15 hrsA 108 protein modification enzyme, induction of ompC #16 ycaP 120 orf, hypothetical protein #17 serC 198 3-phosphoserine aminotransferase #18 aroA 70 5-enolpyruvylshikimate-3-phosphate synthetase #19 ycaL 144 putative heat shock protein #20 cmk 172 cytidylate kinase #21 rpsA 110 30S ribosomal subunit protein S1 #22 himD 159 integration host factor (IHF), beta subunit; site-specific recombination #23 ycaI 129 orf, hypothetical protein #24 msbA 36 ATP-binding transport protein; multicopy suppressor of htrB #25 ycaQ 36 orf, hypothetical protein #26 ycaR 51 orf, hypothetical protein #27 yceD 159 orf, hypothetical protein #28 rpmF 51 50S ribosomal subunit protein L32 #29 plsX 110 glycerolphosphate auxotrophy in plsB background #30 fabH 67 3-oxoacyl-[acyl-carrier-protein] synthase III; acetylCoA ACP transacylase #31 acpP 210 acyl carrier protein #32 fabF 87 3-oxoacyl-[acyl-carrier-protein] synthase II #33 pabC 119 4-amino-4-deoxychorismate lyase #34 ptsG 294 PTS system, glucose-specific IIBC component #35 hemA 213 enzyme in alternate path of synthesis of 5-aminolevulinate #36 prfA 41 peptide chain release factor RF-1 #37 kdsA 35 2-dehydro-3-deoxyphosphooctulonate aldolase #38 rspA 205 starvation sensing protein #39 b1582 134 orf, hypothetical protein #40 manA 198 mannose-6-phosphate isomerase #41 malX 174 PTS system, maltose and glucose-specific II ABC #42 pfkB 286 6-phosphofructokinase II; suppressor of pfkA #43 celC 50 PEP-dependent phosphotransferase enzyme III for cellobiose, arbutin, and salicin #44 celB 84 PEP-dependent phosphotransferase enzyme II for cellobiose, arbutin, and salicin #45 celA 298 PEP-dependent phosphotransferase enzyme IV for cellobiose, arbutin, and salicin #46 osmE 201 activator of ntrL gene #47 manX 300 PTS enzyme IIAB, mannose-specific #48 cpsG 104 phosphomannomutase #49 gmd 25 GDP-D-mannose dehydratase #50 wcaA 34 putative regulator #51 BIME92 24 BIME #52 wza 300 putative polysaccharide export protein #53 gatD 47 galactitol-1-phosphate dehydrogenase #54 gatB 30 galactitol-specific enzyme IIB of phosphotransferase system #55 gatZ 28 putative tagatose 6-phosphate kinase 1 #56 gatY 197 tagatose-bisphosphate aldolase 1 #57 BIME96 27 BIME #58 b2097 184 orf, hypothetical protein #59 fruB 300 PTS system, fructose-specific IIA/fpr component #60 pdxB 98 erythronate-4-phosphate dehyrogenase #61 glk 203 glucokinase #62 ptsH 300 PTS system protein HPr #63 ptsI 44 PEP-protein phosphotransferase system enzyme I #64 crr 40 PTS system, glucose-specific IIA component #65 srlA 255 PTS system, glucitol/sorbitol-specific IIC component, one of two #66 ascF 256 PTS system enzyme II ABC (asc), cryptic, transports specific beta-glucosides #67 fucA_fucP 546 fucA: L-fuculose-1-phosphate aldolase, fucP: fucose permease #68 fucI 32 L-fucose isomerase #69 fucK 78 L-fuculokinase #70 fba 214 fructose-bisphosphate aldolase, class II #71 pgk 49 phosphoglycerate kinase #72 epd 284 D-erythrose 4-phosphate dehydrogenase #73 yggD 21 putative transcriptional regulator #74 cmtA 27 PTS system, mannitol-specific enzyme II component, cryptic #75 cmtB 300 PTS system, mannitol-specific enzyme II component, cryptic #76 agaZ 248 putative tagatose 6-phosphate kinase 2 #77 BIME157 76 BIME #78 agaS 191 putative tagatose-6-phosphate aldose/ketose isomerase #79 agaB 166 PTS system, cytoplasmic, N-acetylgalactosamine-specific IIB component 1 (EIIB-AGA) #80 agaC 38 PTS system N-acetylgalactosamine-specific IIC component 1 #81 yrbG 209 orf, hypothetical protein #82 rpoN 47 RNA polymerase, sigma(54 or 60) factor; nitrogen and fermentation regulation #83 yhbH 22 probable sigma-54 modulation protein #84 ptsN 117 phosphotransferase system enzyme IIA, regulates N metabolism #85 xylA 300 D-xylose isomerase #86 mtlA 300 PTS system, mannitol-specific enzyme IIABC components #87 BIME180 41 BIME #88 mtlD 88 mannitol-1-phosphate dehydrogenase #89 rfaD 288 ADP-L-glycero-D-mannoheptose-6-epimerase #90 rfaS 36 lipopolysaccharide core biosynthesis #91 rfaQ 300 lipopolysaccharide core biosynthesis #92 glvB 24 PTS system, arbutin-like IIB component #93 glvC 34 PTS system, arbutin-like IIC component #94 bglF 133 PTS system beta-glucosides, enzyme II, cryptic #95 bglG 285 positive regulation of bgl operon #96 BIME185 97 BIME #97 pstC 86 high-affinity phosphate-specific transport system, cytoplasmic membrane component #98 pstS 300 high-affinity phosphate-specific transport system; periplasmic phosphate-binding protein #99 trxA 76 thioredoxin 1 #100 rhoL 140 rho operon leader peptide #101 rho 84 transcription termination factor Rho; polarity suppressor #102 rfe 239 UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase; synthesis of enterobacterial common antigen (ECA) #103 wecD 106 orf, hypothetical protein #104 yifM_2 241 orf, conceptual translation in SwissProt is fused with b4404 #105 frvA 300 PTS system, fructose-specific IIA component #106 rhaD 85 rhamnulose-phosphate aldolase #107 rhaB 287 rhamnulokinase #108 b3913 146 orf, hypothetical protein #109 yiiP 148 putative transport system permease protein #110 pfkA 180 6-phosphofructokinase I #111 tpiA 107 triosephosphate isomerase #112 yiiQ 100 orf, hypothetical protein #113 frwC 300 PTS system, fructose-like enzyme II component #114 pflD 50 formate acetyltransferase 2 #115 sgaT 291 orf, hypothetical protein #116 fbp 175 fructose-bisphosphatase #117 treB 118 PTS system enzyme II, trehalose specific #118 treR 300 repressor of treA,B,C #119 sgcA 130 putative PTS system enzyme II A component #120 sgcC 286 putative PTS system enzyme IIC component #121 sgcX 300 putative lyase/synthase Motif number 1 ACGATATTTGGTGACAAAACTCACAAAAGACACGCGT 14 129 1 GTGATCACAA 0.964889 -172 TTTCAATCAAGTGAAATTGATCACATA 15 92 1 GTGATCACAA 0.964889 -17 ATTCTTTTGTGTGATGCAAGCCACATTTTTGCCCTCA 17 48 1 GTGACCACAT 0.874495 -151 TTATCATTCAGTGACACACATCGCAATGAGTAAAACC 17 87 0 GTGATCGCAT 0.952308 -112 ACCTGTGGTTATGACCCTCTTCACATTTCGGGCAAAT 45 99 0 ATGATCACAT 0.730289 -200 TTTAAATATCGAGATAACGATCACAAAAACGACAATA 56 124 0 GAGATCACAA 0.596918 -74 AAATATTCAGGTGACCGGTTTCACAAATATAAAAAAT 66 84 1 GTGATCACAA 0.964889 -173 GCTCTGTAATATGACGGCGGTCACACTTATTAGCTAG 67 150 1 ATGATCACAT 0.730289 -397 GATTATTAAAGTGATGGTAGTCACATAAAGTCACCTT 67 187 0 GTGATCACAA 0.964889 -360 GGATAAAAGTGTGATGTGAGTCAGATAAATGTCTTCT 72 76 1 GTGATCAGAA 0.721855 -209 TAGATAAGGCGTGTTGTAGATCACAAATATTTATATG 75 71 1 GTGTTCACAA 0.628165 -230 TGTTTCTTTTGTGAATCAGATCAGAAAACCATTATCT 76 134 1 GTGATCAGAA 0.721855 -115 ATTCACAAGTGTGCGCTCGCTCGCAAAATAAAATGGA 85 168 0 GTGCTCGCAA 0.86054 -133 GCATTTAAATGTGAGTAGTGTCACATTTTTGTTTTGA 86 23 0 GTGATCACAT 0.955986 -278 GGTAATTGACGTGACGTTCATCACAAAACGCTTGTGT 86 96 0 GTGATCACAA 0.964889 -205 GGCCTTTTGTGTGATATCAATCACATAAATATAGGGG 86 140 0 GTGATCACAA 0.964889 -161 AACCGATTCAGTGCCAGATTTCGCAGTATCTACAAGG 86 192 1 GTGCTCGCAT 0.829842 -109 TGATAAAAATATGACCATGCTCGCAGTTATTAACTTT 95 85 0 ATGATCGCAT 0.713404 -201 TAACCATTATGTGCATTACTCCGCAAATCTGACCTTT 105 172 1 GTGCCCGCAA 0.664375 -129 TTGTGGTGATGTGATGCTCACCGCATTTCCTGAAAAT 107 127 0 GTGACCGCAT 0.864969 -161 AAAGATGAACGTGATGATGTTCACAATTTGCTGAATT 107 162 0 GTGATCACAT 0.955986 -126 ACAGCGTCTTGTGAGACGCGTCGCAAATTGACGGTTA 113 100 0 GTGATCGCAA 0.961925 -201 ATCGCAAGTTATGAGGCGGATCGCATTTTTGTACTGA 113 158 1 ATGATCGCAT 0.713404 -143 ATGATTAAATGTGACGCGACCCGCAAATAATTCCACA 115 226 0 GTGACCGCAA 0.890168 -66 GCGTTTTCACGTGAACGTTCTCACAATTATTCGACCA 121 248 1 GTGATCACAT 0.955986 -53 **** ***** * Masking position 15 Map Score: 32.2392 Number of sites scoring better than the average of aligned sites = 145 Number in coding regions = 54 Number in noncoding regions = 91 Number of orfs with sites within 600 bp upstream = 100 Fraction of orfs with sites within 600 bp upstream = 0.0160617 Motif number 2 CCTGCATATGGCCCCCTTTTTCACTTTTATA 5 190 1 GCCCCTTTTT 0.668012 -68 GGCACATTGTCGGCGTTTTTTTTCGGACCTT 19 58 1 CGCGTTTTTT 0.838463 -87 GCACCTGTCGGGTGCTTTTTTCATTTCTCTA 23 41 1 GGGCTTTTTT 0.939176 -89 TTCAACAAATGCTGGTTTTTTGA 24 24 1 GCGGTTTTTT 0.831507 -13 GCAACCACAGGCTGCCTTTTTCTTTGACTCT 27 109 1 GCGCCTTTTT 0.742796 -51 GTCCGCTTGCGGGCCTTTTTTCTTAGCTTTT 33 37 1 GGCCTTTTTT 0.914953 -83 CCTGAGTATGGGTGCTTTTTTTACGTTCTCA 34 261 0 GGGCTTTTTT 0.939176 -34 TGTGATCACTCCGGCTTTTTTCGATCTTTAT 38 118 1 CCGCTTTTTT 0.773105 -88 CTAAGTTATTCGCGCCTTTTTATAATTCGTT 42 98 0 CGGCCTTTTT 0.81342 -189 CGGCCATTGCGCCGGTTTTTTTTGGCCTGAG 45 46 1 GCGGTTTTTT 0.831507 -253 GGAATACATTGGGCGCTTTTTCAAGCCCGTG 46 143 0 GGCGCTTTTT 0.814793 -59 CGCTACCGCCCCTGGCTTTTTAGCTACCAAT 52 100 0 CCGGCTTTTT 0.582177 -201 CCTATCGGGAGGCCGTTTTTTTGCCTTTCAC 56 76 1 GGCGTTTTTT 0.899931 -122 AAGCCAGGTTGGCGCTTTTTTTCTCATAGAG 59 245 1 GGGCTTTTTT 0.939176 -56 GGTGCTTCGGCGACCTTTTTTATTACCTTGA 75 17 1 CGCCTTTTTT 0.86129 -284 GCTGGAAGCCCGAGGTTTTTTGTTAATGTGG 86 246 0 CGGGTTTTTT 0.881653 -55 GGGGCGGTAGCGTGCTTTTTTCTGCTTAACT 91 214 1 CGGCTTTTTT 0.899111 -87 ATTCACGTCAGGCCGTTTTTTTCAGGTTTTT 94 76 1 GGCGTTTTTT 0.899931 -58 AGCAAGGACCTTTTTTATAAACAAAA 95 270 0 GGCCTTTTTT 0.914953 -16 CTTGAAAAATCGACGTTTTTTACGTGGTTTT 107 85 0 CGCGTTTTTT 0.838463 -203 CACATGCTGTGGGGGTTTTTTTTATCCTCAA 109 55 1 GGGGTTTTTT 0.928096 -94 TATTATTTGCGGCGCTTTTTTCACTTACCGG 118 134 0 GGGCTTTTTT 0.939176 -167 ** ******** Masking position 7 Map Score: 26.2638 Number of sites scoring better than the average of aligned sites = 267 Number in coding regions = 133 Number in noncoding regions = 134 Number of orfs with sites within 600 bp upstream = 107 Fraction of orfs with sites within 600 bp upstream = 0.017186 Motif number 3 GTGGGAATAAGGGGTGAGGCTGGC 1 287 1 GGGGTGAGGC 0.981842 -14 CCCAAATCCAGAGGAGAGGAAATAGCC 3 8 0 GAGGAGAGGA 0.592762 -97 TCTGGATTTGGGGGAGAGGAGTTTTGACGG 3 26 1 GGGGAGAGGA 0.931321 -79 AAATATGAAGGGGGAGAGCCCTTATAGACC 5 135 1 GGGGAGAGCC 0.956286 -123 GCAACGCAACGTGGTGAGGGGAA 17 186 1 GTGGTGAGGG 0.868614 -13 GCGTTATTGGGGGGTAAGGCCTCAAAATAA 31 85 1 GGGGTAAGGC 0.728373 -126 CGTGGCAAGGGGGGAGAGCCTCGCCGTGTA 34 229 0 GGGGAGAGCC 0.956286 -66 GTAAGTGACTGGGGTGAGCGAACGCAGACG 70 137 1 GGGGTGAGCG 0.951375 -78 GATTAATATCGGGGAGTGCCTTAATGGAAA 79 48 1 GGGGAGTGCC 0.637293 -119 CCTTCTCCATGTGGAGAGGGTGGGATTGGA 87 11 0 GTGGAGAGGG 0.893843 -31 CCCTCTCCGTGAGGAGAGGGGCAG 88 5 0 GAGGAGAGGG 0.893843 -84 GGAGAGGGTTTGGGTGAGGGAAAAGCCTCA 88 27 1 TGGGTGAGGG 0.777034 -62 CGAGAGGGCTGGGGTGAGGCTTTTCCCTCA 88 41 0 GGGGTGAGGC 0.981842 -48 GGAGAGGGTTAGGGTGAGGGGAAAACCGTG 96 20 0 AGGGTGAGGG 0.860047 -78 TCGCCCCTCTGGGGAGAGGGTTAGGGTGAG 96 32 0 GGGGAGAGGG 0.987412 -66 TCTCCCCAGAGGGGCGAGGGGACCGACCGA 96 45 1 GGGGCGAGGG 0.942393 -53 ATCTCCGTCGAGGGAGAGGCGTGGGATCAG 118 90 1 AGGGAGAGGC 0.872951 -211 ********** Masking position 4 Map Score: 21.6856 Number of sites scoring better than the average of aligned sites = 141 Number in coding regions = 72 Number in noncoding regions = 69 Number of orfs with sites within 600 bp upstream = 43 Fraction of orfs with sites within 600 bp upstream = 0.00690652 Motif number 4 GGCCAGCGCGCAGCAACCGGAGCGTACAAAA 7 107 1 CAGCACCGGA 0.684708 -185 GCGCGACTCTCTGTAGCCGGATTATCC 9 7 0 CTGTACCGGA 0.656192 -179 CTTAAAGATGCCTAATCCGCC 14 1 0 CCTAACCGCC 0.563868 -300 TGTTAAACAACCCCATCCGGCATGGAGCCAG 21 58 1 CCCCACCGGC 0.873349 -53 TTAAGGGCGGCCGTAGCCGCCCTTAGTGCTT 22 87 0 CCGTACCGCC 0.962474 -73 TGGGGAAAGACCAAACCGGGCGGCGACGATA 29 58 1 CCAAACGGGC 0.72316 -53 GCACGATTACCCGTACCGGCATCGA 43 5 0 CCGTACGGCA 0.918271 -46 TGAGTAACAACGGAAACCGGCCATTGCGCCG 45 29 1 CGGAACCGGC 0.914152 -270 AAACGACAAGCGACAGCGGGCTGAATGGTGG 46 67 1 CGACACGGGC 0.639799 -135 TTGGCCCTGACCGAAGCGGCCAATTTTATTT 48 59 0 CCGAACGGCC 0.944752 -46 TATGTTTACACCGCATCCGGCATAAAAACAC 56 25 1 CCGCACCGGC 0.98186 -173 GCTACGGCTTCCCTATCGGGAGGCCGTTTTT 56 65 1 CCCTACGGGA 0.726389 -133 TATGTAAAGTCCGTATCGGGCAGTGACTACC 65 79 0 CCGTACGGGC 0.981068 -177 AATTCCGTTTCAGCATCGGCATTTTTCCGTC 66 184 1 CAGCACGGCA 0.560543 -73 GATTTATTTTCTGAAACGGGCATGAAATTTC 67 224 0 CTGAACGGGC 0.759873 -323 TGTTCAGGCCCGGTAGCCGGAGCGACCGGGC 69 32 0 CGGTACCGGA 0.874945 -47 GCGTAAAACACCGTACCCGGCCTGGAGTTTT 97 12 0 CCGTACCGGC 0.979411 -75 GTGTTTTACGCCGCATCCGGCATTACAAAAT 97 32 1 CCGCACCGGC 0.98186 -55 CGCGCGAGCGCCTTATCCGGCCTACGGGTCG 106 28 1 CCTTACCGGC 0.796664 -58 AAACAGAAAACCGTACCGGGA 113 1 0 CCGTACGGGA 0.954209 -300 TAAGAGCGCACGGCAACGGCCTGCCATGTGA 113 38 1 CGGCACGGCC 0.92081 -263 CCAGATTAACCCGAATCGGCATGGAGTCAAC 119 105 1 CCGAACGGCA 0.873039 -26 TTGTGGCATGCGGTACCGGCATGTCGACTTC 120 20 1 CGGTACGGCA 0.804282 -267 ***** ***** Masking position 5 Map Score: 19.0326 Number of sites scoring better than the average of aligned sites = 1352 Number in coding regions = 1070 Number in noncoding regions = 282 Number of orfs with sites within 600 bp upstream = 146 Fraction of orfs with sites within 600 bp upstream = 0.02345 Motif number 5 ATAAAGCGCGCCGGACTTCCGATCCATTTCG 4 138 1 CCGGACTTCG 0.71896 -163 TGTGATCTGCCCGGCATTAAACCGCACAGAT 5 220 0 CCGGCATTAA 0.388352 -38 AGAAACAACGCCGCGATGACGACGGGTATTA 10 57 0 CCGCGATGCG 0.871582 -64 CAATAATAACACGGCCTGCCGCAATCGTAAG 13 53 0 ACGGCCTGCG 0.962419 -52 GCTATCACCGCCGCCATGCCGATGAACTGTT 16 59 1 CCGCCATGCG 0.925655 -62 ACAACCCCATCCGGCATGGAGCCAGGTGGAC 21 64 1 CCGGCATGAG 0.908162 -47 GTAAGACCTGCCGGGATTTAGTTGCAAATTT 31 127 1 CCGGGATTAG 0.69252 -84 AGGCAAAAAAACGGCCTCCCGATAGGGAAGC 56 71 0 ACGGCCTCCG 0.714284 -127 AAGCTTTATTCCAGGCTGGCGTAATAATAAC 72 34 0 CCAGGCTGCG 0.685576 -251 AAACCAACATCCGCCATGAAGGACTAGCTAA 89 133 1 CCGCCATGAG 0.760193 -156 TACCCGGGCTTGCAGGCAAAAAAG 93 21 0 CCGGGCTTCA 0.778782 -14 CCTGAAAAAAACGGCCTGACGTGAATCAAGC 94 71 0 ACGGCCTGCG 0.962419 -63 AACACCGTACCCGGCCTGGAGTTTTA 97 6 0 CCGGCCTGAG 0.962419 -81 TACGCCGCATCCGGCATTACAAAATGACTTT 97 38 1 CCGGCATTCA 0.713778 -49 AATCTTAATGCCGCGCTGGCGATGTTAGGAA 102 68 1 CCGCGCTGCG 0.946169 -172 GCGCACGGCAACGGCCTGCCATGTGACAAAT 113 43 1 ACGGCCTGCA 0.797381 -258 AAGCTGCTCCCGGGCTTGCGAAAGCCCATG 113 281 0 CCGGGCTTCG 0.958174 -20 GAAAGCGAACCCGCCCTTGCGAGCGGGAGAA 114 15 0 CCGCCCTTCG 0.930902 -36 TTAAAACGTCACGGCCTTACGCATCCGGTAA 118 24 1 ACGGCCTTCG 0.91453 -277 GCATGCGGTACCGGCATGTCGACTTCAACCA 120 25 1 CCGGCATGCG 0.9749 -262 TGTGAAAGTTACGGGCTGGAGAGACCAGTGA 121 159 0 ACGGGCTGAG 0.780422 -142 ******** ** Masking position 7 Map Score: 18.6561 Number of sites scoring better than the average of aligned sites = 1296 Number in coding regions = 1216 Number in noncoding regions = 80 Number of orfs with sites within 600 bp upstream = 64 Fraction of orfs with sites within 600 bp upstream = 0.0102795 Motif number 6 TGAGTACCGTAAACCCTGTCAGGGAATAAAAAA 9 160 1 AAACCTCAGG 0.708584 -26 TTACAATGGCGAACCCCACCGGCGGCAACAGAA 10 84 0 GAACCCCGGC 0.855254 -37 TATGTTAAACAACCCCATCCGGCATGGAGCCAG 21 56 1 AACCCCCGGC 0.563184 -55 CTGCGGACGCAAAACGTACCAGGAGGGTGTTTA 39 57 1 AAACGCCAGG 0.729946 -78 TTTCAGTCTGGCACCGAATCAGCGGAAAGTGAA 42 244 0 GCACGTCAGC 0.894486 -43 TGAACCCCTCCAGACAGAAAAGAC 46 2 1 GAACCCCAGA 0.485821 -200 TGACGTTTTAACCACCATTCAGCCCGCTGTCGC 46 76 0 ACCCCTCAGC 0.576755 -126 GCCCGTGAACGAAACGGCTCCGCTTTCAGAGGA 46 117 0 GAACGTCCGC 0.857552 -85 GTCCACAATCGAATCGATTCAGATAAGGGCTAC 47 219 0 GAACGTCAGA 0.610323 -82 TTAATTTTTCACACCCTCTCAGCATGCAGTCGT 52 54 0 ACACCTCAGC 0.782146 -247 AGCAGCGTCAGCAGCCAATCAGCAACAGTGAAA 59 44 0 GCACCTCAGC 0.861975 -257 ATGCTTTCTTGAAACGTTTCAGCGCGATCTTGT 59 202 1 GAACGTCAGC 0.957146 -99 TTGCTGAATTGAAACGATTCAGCCTCTATGAGA 59 266 0 GAACGTCAGC 0.957146 -35 CCAAATCATAAAATCGATTCAGCTTTGGCTTTT 62 82 0 AAACGTCAGC 0.927747 -219 GTCAGCGGTCAACACCCGCCAGCAATGGACTGT 62 160 1 AACCCCCAGC 0.746198 -141 TTAATCGACTGAAACGCTTCAGCTAGGATAAGC 72 148 0 GAACGTCAGC 0.957146 -137 CATCACATCCGAATCCCTTCAGCCCTTTACATA 89 204 0 GAACCTCAGC 0.942705 -85 GGTGAGGGGAAAACCGTGTCAGCAATA 96 5 0 AAACGTCAGC 0.927747 -93 AATGCTTTATGAATCCTCCCAGGAGACATT 98 281 1 GAACCCCAGG 0.775965 -20 TTGCTTTACGAAAGCGTATCCGGTGAAATAAAG 99 36 1 AAACGTCCGG 0.470803 -41 TGGGCTTAATGCCACCACTCAGCAGAGCCAGCC 104 58 0 GCCCCTCAGC 0.703294 -184 GCCTGGCGCAAAAGCGAGTCGGCTGTGTATTTG 104 175 1 AAACGTCGGC 0.849188 -67 GGCCTGACCTGAATCAATTCAGCAGGAAGTGAT 110 63 1 GAACATCAGC 0.541405 -118 TGTAAACAGAAAACCGTACCGGGA 113 2 0 AAACGCCGGG 0.5424 -299 CTCCTGTGGGAAAGCGAACCCGCCCTTGCGAGC 114 22 0 AAACGCCCGC 0.739188 -29 GCGCTCAGGTGAATCGCGCCAGCAAATTACGGA 116 86 0 GAACGCCAGC 0.948161 -90 CTACCAGATTAACCCGAATCGGCATGGAGTCAA 119 102 1 AACCGTCGGC 0.681244 -29 *** ** ***** Masking position 5 Map Score: 23.0555 Number of sites scoring better than the average of aligned sites = 874 Number in coding regions = 804 Number in noncoding regions = 70 Number of orfs with sites within 600 bp upstream = 58 Fraction of orfs with sites within 600 bp upstream = 0.00931577 Motif number 7 TGCGACGCGAGCGGCATTTTAGGACATATC 1 17 0 GCGGCATTTT 0.811342 -284 GATCTACTGAGCGGCGTTTTTGTCGTTCAA 8 15 0 GCGGCGTTTT 0.987859 -77 GGATCGGCTGGCGGCGTTTTGCTTTTTATT 8 50 1 GCGGCGTTTT 0.987859 -42 CGTCGTCATCGCGGCGTTGTTTCTGTTGCC 10 64 1 GCGGCGTTGT 0.953086 -57 CGACAATGTGCCGACGTTTTGATAAAGAAA 19 40 0 CCGACGTTTT 0.67509 -105 CGGCACATTGTCGGCGTTTTTTTTCGGACC 19 57 1 TCGGCGTTTT 0.832009 -88 TTGACTATTCGTGGCGCTTTTGATTT 59 7 0 GTGGCGCTTT 0.836543 -294 GCCTGCCTTTCCGGCGTTGTTGTTATGCCC 61 128 1 CCGGCGTTGT 0.771332 -76 GTAGAAGTTTGCGACGTTTTAGCAGGAGAG 82 15 1 GCGACGTTTT 0.926003 -33 AAGCAACAAGGCGGCGATTTTCGCTAAAAA 86 62 0 GCGGCGATTT 0.938529 -239 ACGTAAACACGTGGCGTTTTTGGCATAAGA 102 16 0 GTGGCGTTTT 0.946327 -224 ACGTGTTTACGTGGCGTTTTGCTTTTATAT 102 34 1 GTGGCGTTTT 0.946327 -206 CCGTCAGCAGCGTTTTTTCTTCCACG 104 7 1 GCAGCGTTTT 0.811342 -235 TTTGCCACCCGCGGCGATTTGAGCTTTTTT 104 204 1 GCGGCGATTT 0.938529 -38 GCGTAAGGCCGTGACGTTTTAACGTCCCTG 118 16 0 GTGACGTTTT 0.730592 -285 CTTATTATTTGCGGCGCTTTTTTCACTTAC 118 137 0 GCGGCGCTTT 0.959377 -164 ********** Masking position 8 Map Score: 20.5389 Number of sites scoring better than the average of aligned sites = 495 Number in coding regions = 453 Number in noncoding regions = 42 Number of orfs with sites within 600 bp upstream = 43 Fraction of orfs with sites within 600 bp upstream = 0.00690652 Motif number 8 ACCTGGATTTGCGCAGACAGGCGTCAATCCGACC 14 36 1 GCGCACGCGT 0.69783 -265 TCTCAAAGGCGCTATCACCGCCGCCATGCCGATG 16 49 1 GCTATCGCGC 0.894595 -72 CGGGGGTACTGCAAATTCGGTCGC 21 1 0 GCAAACGCGC 0.947155 -110 AGCACTAAGGGCGGCTACGGCCGCCCTTAATCAA 22 88 1 GCGGCCGCGC 0.704588 -72 AATCAATGCAGCAACAGCAGCCGCTTAATTTGCC 22 116 1 GCAACCGCGC 0.846342 -44 ACTCCATCAATCGAACGCTGCCGCGGCGTAA 25 8 0 TCGAACGCGC 0.855959 -29 TTGAACATAGACGATAGCGGACGGTAACGCTAGC 35 56 0 ACGATCGCGG 0.569786 -158 GGGGCGGTGCGAATGCAGGCGTCG 51 3 0 GCGAACGCGT 0.943953 -22 ACTGGGGTGAGCGAACGCAGACGCAGCACATGCA 70 144 1 GCGAACGCGC 0.978987 -71 GCCGTGGTTAGCGAAAGCTGGCATTTGTTTTACT 81 94 1 GCGAACGCAT 0.629372 -116 GCCATTTTTAGCGAAAATCGCCGCCTTGTTGCTT 86 58 1 GCGAATGCGC 0.841809 -243 TGTAGATACTGCGAAATCTGGCACTGAATCGGTT 86 192 0 GCGAACGCAC 0.910752 -109 ACAAGGTCCGGCTACCTCTGCCGCCACATTAACA 86 223 1 GCTACCGCGC 0.874267 -78 CGAGAAGGTCGCGAATTCAGGCGCTTTTTAGACT 107 234 1 GCGAACGCGC 0.990617 -54 TCCGATTAAAACGATATCTGTCGCCCTTGTCAAA 112 51 0 ACGATCGCGC 0.87946 -50 GAAACAATAGGCAATCGCAGGCGGAGCAAACAGT 113 229 0 GCAATCGCGG 0.686086 -72 TAACCCTTCTGCGATCCCTGCCGCCTTCGTCAAA 119 51 1 GCGATCGCGC 0.986631 -80 TAATCTGGTAGCGATCCCCGTCGATACTTTTGAC 119 79 0 GCGATCGCGA 0.838632 -52 ***** * * *** Masking position 10 Map Score: 15.1143 Number of sites scoring better than the average of aligned sites = 746 Number in coding regions = 713 Number in noncoding regions = 33 Number of orfs with sites within 600 bp upstream = 27 Fraction of orfs with sites within 600 bp upstream = 0.00433665 Motif number 9 AAATTTTTACTTACCTTACGTTCTTACACTTTAT 2 85 0 CTTCTTTTCT 0.685759 -24 GCGCGCCGGACTTCCGATCCATTTCGTATACACAG 4 143 1 CTTCATTTTC 0.582352 -158 AGTTTTCACCCTTTCGTTAAATTCTTCTGAAT 23 108 1 CTTCTTTTCT 0.685759 -22 ACGTCTAACCCTGGCGTTAGATGTC 29 96 1 CTGCTTTGTC 0.613058 -15 ATCCTGTCGTTTGTTTTCGATTTCAAAA 56 180 0 CTGCTTTTTC 0.802046 -18 CATCGCGTACCTTACATTACCTGTCATGAAGGAAT 58 17 0 CTTCTTTGTC 0.871607 -168 AACTTTACGGCTTTCCTTGCGTGCTGAAACAGAAG 59 163 1 CTTCTTTGCT 0.460437 -138 TTTCGTAAAACTTTCGTTTCATTTCGTTTTGCCTA 76 20 1 CTTCTTTTTC 0.945535 -229 GTTTCAGTGACTTTCATTATGTTTCTTTTGTGAAT 76 115 1 CTTCTTTTTC 0.945535 -134 AAACCATTATCTTTCGTTTTATTTTTATCTCACCA 76 159 1 CTTCTTTTTT 0.857142 -90 CGATATTAATCTTTCGTTTTGTTTCAGTTGATACT 76 200 0 CTTCTTTTTC 0.945535 -49 CCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCT 77 42 1 CTTCTTTTTC 0.945535 -35 ATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGA 78 11 1 CTTCTTTTTT 0.857142 -181 GTCGCTTTCACTTGCCTTTCGTTTCATTTCACTTG 78 128 0 CTTCTTTTTC 0.945535 -64 CACCCTTCGTCTTGCGTTGATTTTCTAAGCATGGC 81 15 1 CTTCTTTTTC 0.945535 -195 CATTCAAATGCTTCCGTTATTTATCATACATCGGA 89 68 1 CTTCTTTATC 0.630811 -221 AGGTCAGGTTCTTACCTTAAATTTTCGACGGAAAA 107 54 1 CTTCTTTTTT 0.857142 -234 *** * ** **** Masking position 8 Map Score: 13.9096 Number of sites scoring better than the average of aligned sites = 29 Number in coding regions = 17 Number in noncoding regions = 12 Number of orfs with sites within 600 bp upstream = 9 Fraction of orfs with sites within 600 bp upstream = 0.00144555 Motif number 10 TTTCGGCTAAGGAGGAAGGCG 3 94 1 GGAGGAGGCG 0.88972 -11 AGTTCGAGTTGCAGAAAGGCGGCAAGCTCGA 5 36 1 GCAGAAGGCG 0.785387 -222 CAAAAGTACGTGAGGATGGCGAGCACTGCCC 7 133 1 TGAGGAGGCG 0.931666 -159 ACGGGTTTTATCTCAAAGGCGCTATCACCGC 16 39 1 TCTCAAGGCG 0.556462 -82 CAACAGTTCATCGGCATGGCGGCGGTGATAG 16 60 0 TCGGCAGGCG 0.763972 -61 TTAGATGCCCTGTACACGGCGAGGCTCTCCC 34 217 1 TGTACAGGCG 0.698568 -78 GCAAGGTAAATGTGCATGGCGACATTGCTAT 52 235 1 TGTGCAGGCG 0.889654 -66 AATTCGAGTTGCAGGAAGGCGACAAGAGAGT 70 84 1 GCAGGAGGCG 0.877899 -131 GTTGATTTTCTAAGCATGGCGCTCAATTTAA 81 30 1 TAAGCAGGCG 0.80484 -180 CAGCTTTCGCTAACCACGGCGGGTAATATTC 81 83 0 TAACCAGGCG 0.735292 -127 GCAATTAGCATGTGCATGGCGGTCTGTTGTG 84 19 1 TGTGCAGGCG 0.889654 -99 GTGTAAAAAAGCAACAAGGCGGCGATTTTCG 86 69 0 GCAACAGGCG 0.802284 -232 GTGTACAGAGTCAAAAAGGCGCTCGGTCGGT 96 66 0 TCAAAAGGCG 0.639983 -32 GACGTAATGCGCACGATGGCGCTGTTAACAC 103 40 0 GCACGAGGCG 0.828851 -67 CCGTGACCACGGCGCTAACGCGTC 103 93 0 TGACCAGGCG 0.947452 -14 CCTGATGTCGTCAACACGGCGAAATAGTAAT 107 19 1 TCAACAGGCG 0.872729 -269 TCTACCCTTTTGACAAGGGCGACAGATATCG 112 43 1 TGACAAGGCG 0.823761 -58 TCGATACTTTTGACGAAGGCGGCAGGGATCG 119 62 0 TGACGAGGCG 0.9018 -69 TTGATCCCTGTGAGCAGGGCGGCGCCATTAA 120 209 0 TGAGCAGGCG 0.963988 -78 ****** **** Masking position 6 Map Score: 15.9884 Number of sites scoring better than the average of aligned sites = 531 Number in coding regions = 497 Number in noncoding regions = 34 Number of orfs with sites within 600 bp upstream = 45 Fraction of orfs with sites within 600 bp upstream = 0.00722775 Motif number 11 ACGATATTTGGTGACAAAACTCACAAAAGACACG 14 129 1 GTGAAATCAC 0.856664 -172 TTTCAATCAAGTGAAATTGATCACATA 15 92 1 GTGAAGTCAC 0.929954 -17 ATTCTTTTGTGTGATGCAAGCCACATTTTTGCCC 17 48 1 GTGAGACCAC 0.723176 -151 TTATCATTCAGTGACACACATCGCAATGAGTAAA 17 90 0 GTGAACTCGC 0.834231 -109 CAGTTGCCTGGGGAAAATCCTCACTAAGCTTCAT 29 26 0 GGGAACTCAC 0.659084 -85 TGCCCGAAATGTGAAGAGGGTCATAACCACAGGT 45 102 1 GTGAGGTCAT 0.459567 -197 TTTAAATATCGAGATAACGATCACAAAAACGACA 56 127 0 GAGAAGTCAC 0.518983 -71 TTTTATATTTGTGAAACCGGTCACCTGAATATTT 66 84 0 GTGAAGTCAC 0.929954 -173 GCTCTGTAATATGACGGCGGTCACACTTATTAGC 67 150 1 ATGAGGTCAC 0.613969 -397 GATTATTAAAGTGATGGTAGTCACATAAAGTCAC 67 190 0 GTGAGATCAC 0.744694 -357 TAGATAAGGCGTGTTGTAGATCACAAATATTTAT 75 71 1 GTGTGGTCAC 0.585794 -230 AAACAAAAATGTGACACTACTCACATTTAAATGC 86 26 1 GTGAAATCAC 0.856664 -275 CAAGCGTTTTGTGATGAACGTCACGTCAATTACC 86 99 1 GTGAGCTCAC 0.498031 -202 GGCCTTTTGTGTGATATCAATCACATAAATATAG 86 143 0 GTGAAATCAC 0.856664 -158 GTTTGGGTGAGGGAAAAGCCTCACCCCAGCCCTC 88 34 1 GGGAACTCAC 0.659084 -55 TTGTGGTGATGTGATGCTCACCGCATTTCCTGAA 107 130 0 GTGAGCCCGC 0.685295 -158 AAAGATGAACGTGATGATGTTCACAATTTGCTGA 107 165 0 GTGAGGTCAC 0.787068 -123 ACAGCGTCTTGTGAGACGCGTCGCAAATTGACGG 113 103 0 GTGAACTCGC 0.834231 -198 ATCGCAAGTTATGAGGCGGATCGCATTTTTGTAC 113 158 1 ATGAGGTCGC 0.459206 -143 ATGATTAAATGTGACGCGACCCGCAAATAATTCC 115 229 0 GTGAGACCGC 0.579305 -63 TCGAATAATTGTGAGAACGTTCACGTGAAAACGC 121 248 0 GTGAAGTCAC 0.929954 -53 **** * * **** Masking position 3 Map Score: 15.0163 Number of sites scoring better than the average of aligned sites = 311 Number in coding regions = 207 Number in noncoding regions = 104 Number of orfs with sites within 600 bp upstream = 117 Fraction of orfs with sites within 600 bp upstream = 0.0187922 Motif number 12 GATACTCTTCCTGTCAAAATATAAGAAAC 13 86 0 TCTCCTGTAA 0.942014 -19 CCCGATAAATTCATCCTGTAAATAATACAAATAC 15 47 1 TCTCCTGTAA 0.942014 -62 ATTGCAGGTTTCGTCCTGTAATCAAGCACTAAGG 22 64 1 TCTCCTGTAA 0.942014 -96 AGGCGTAAATGCACCCTGTAAAAAAAGAAAATGA 36 18 0 GCCCCTGTAA 0.752298 -24 GGGTGTTCCGTTGCCCTGTTAAAAGCGAGTAACA 40 51 1 TTCCCTGTAA 0.883233 -148 CCAGTCTGAATTATTCTGTCAATAGCCTGCGGAT 52 150 1 TTTTCTGTAA 0.686453 -151 ATCCCTCTGTAACAATAAAAAGGAC 54 2 1 TCCTCTGTAA 0.724957 -29 GGAAAGGCAGGCTCCCTGTAAATATCGATCTGGG 61 106 0 GCCCCTGTAA 0.752298 -98 CAGCTTTGGCTTTTCCTGTAACGATTAATTTCGC 62 62 0 TTTCCTGTAA 0.909933 -239 CGGATTTTATCCTGTTATCAGTAGGGTAGA 66 237 0 TTTCCTGTAA 0.909933 -20 GGGGCATTTTTCTTCCTGTTATGTTTTTAATCAA 98 20 1 TCTCCTGTAT 0.801588 -281 AGAATGAAAATTTTTCTGTCATCTCTTCGTTATT 98 111 1 TTTTCTGTAT 0.35252 -190 GAAGACTTTATCTCTCTGTCATAAAACTGTCATA 98 190 1 TCCTCTGTAA 0.724957 -111 CAATGGCCCATTTTCCTGTCAGTAACGAGAAGGT 107 209 1 TTTCCTGTAA 0.909933 -79 CCGTGCGCTCTTATCCTGTAAACAGAAAACCGTA 113 17 0 TTTCCTGTAA 0.909933 -284 CCTGTTGTCCTGTAACGTGTTGTTTAAT 118 283 0 TTTCCTGTAT 0.715296 -18 ** ****** * * Masking position 7 Map Score: 10.1036 Number of sites scoring better than the average of aligned sites = 44 Number in coding regions = 23 Number in noncoding regions = 21 Number of orfs with sites within 600 bp upstream = 31 Fraction of orfs with sites within 600 bp upstream = 0.00497912 Motif number 13 AAGGGTGATAGCCGTCAAAACTCCTCTCCCC 3 36 0 GCGTCAAAAC 0.69057 -69 CAGCTCATAAGCCGGGAGAACAACCT 50 19 1 GCGGGAGAAC 0.859471 -16 AAATACCTTTGCGGTGAAAACTTGACCGCGC 58 77 1 GCGTGAAAAC 0.827937 -108 CTTTTTGCAAGCTGGGCAAACTAAGTATCTG 61 32 0 GCGGGCAAAC 0.859471 -172 AAATCACAGGGCAGGGAAACCTGCCCTTGTT 70 12 1 GCGGGAAACC 0.949644 -203 AGCAAATCGTCCGGGGAAACCTTACCTGTCG 72 214 0 CCGGGAAACC 0.875952 -71 GCAAATTTGCTCAGGGAAAACCTTGCAGGAG 72 260 1 TCGGGAAAAC 0.775802 -25 AAGCAATTGAGCAGGGAAACCGGTGTTTTGA 75 211 0 GCGGGAAACC 0.949644 -90 AGCAACTAAACAGGGGAAAACAATTACAGAT 85 19 1 CAGGGAAAAC 0.643079 -282 ACCCGGGCTTGCAGGCAAAAAAGAGATCTAG 93 13 0 GCGGCAAAAA 0.69057 -22 ACCGCACTAAGCGGGCAAAACCTGAAAAAAA 94 38 1 GCGGCAAAAC 0.957206 -96 TACTGCATTCGCAGGCAAAACCTGACATAAC 95 213 1 GCGGCAAAAC 0.957206 -73 GGGTTAGGGTGAGGGGAAAACCGTGTCAGCA 96 14 0 GAGGGAAAAC 0.827937 -84 GCCACTAACCTGGGAAAACGCCTTCTTTG 103 9 1 CCGGGAAAAC 0.947529 -98 GGTGTCTATGGCAAGGAAAACAGGGTTTA 109 9 0 GCAGGAAAAC 0.718241 -140 CAACAACTTCCCTGGCAAAAAGTCAAAAAAT 115 95 0 CCGGCAAAAA 0.455237 -197 ** ******** Masking position 9 Map Score: 10.669 Number of sites scoring better than the average of aligned sites = 536 Number in coding regions = 492 Number in noncoding regions = 44 Number of orfs with sites within 600 bp upstream = 44 Fraction of orfs with sites within 600 bp upstream = 0.00706714 Motif number 14 TCCTAAAATGCCGCTCGCGTCGCAAACTGACA 1 23 1 CCCCGCGTCG 0.845312 -278 AAGAAGCCGCCCTCAGGCGGCTCCTTTTTGAT 6 13 0 CCCGGCGGCT 0.832243 -134 GCCATTTTGGCCCCGGGCAGTGCTCGCCATCC 7 146 0 CCCGGCAGTG 0.595124 -146 CCTTGCGGATCGGCTGGCGGCGTTTTGCTTTT 8 44 1 CGCGGCGGCG 0.991122 -48 ATGGCGAACCCCACCGGCGGCAACAGAAACAA 10 80 0 CCCGGCGGCA 0.959832 -41 AATATAAGATCGCCGGGCCACGCAAAGAACTG 12 63 1 CGCGGCCACG 0.675143 -59 CTTACGATTGCGGCAGGCCGTGTTATTATTGT 13 53 1 CGCGGCCGTG 0.856475 -52 AAGACCAAACCGGGCGGCGACGATACCTTGAC 29 64 1 CGGGGCGACG 0.874098 -47 AGCTAAAAAGCCAGGGGCGGTAGCGTGTCTGG 52 106 1 CCGGGCGGTA 0.773312 -195 TTTAGGGTACCGTCCGGCGGTAAAAATAAAAT 75 260 0 CGCGGCGGTA 0.93695 -41 ATGAACTTGACGTCGGGCGTTGTCGCTTTCAC 78 152 0 CGCGGCGTTG 0.941233 -40 ATTCACCCTTCGTCTTGCGTTGATTTTCTAAG 81 12 1 CGCTGCGTTG 0.601413 -198 AGCTGTTGAGCCTGGGGCGGTAGCGTGCTTTT 91 201 1 CCGGGCGGTA 0.773312 -100 TTTTGTAATGCCGGATGCGGCGTAAAACACCG 97 30 0 CCGTGCGGCG 0.705765 -57 GCATGACTCACGCCGGGCGTCCAGTTTTTAGC 100 38 0 CGCGGCGTCC 0.789258 -103 GGCGCTAACGCGTCTGGCGTCAGGAGCGGTGC 103 75 0 CGCGGCGTCA 0.924766 -32 CTCGCTTTTGCGCCAGGCGACGTAGTGGGTAA 104 161 0 CGCGGCGACG 0.951024 -81 TGTGTATTTGCCACCCGCGGCGATTTGAGCTT 104 198 1 CCCCGCGGCG 0.93326 -44 TGCAAACATGCGTCAGGGGGTGTAAAACAACG 108 70 0 CGCGGGGGTG 0.743889 -77 GAATTATTTGCGGGTCGCGTCACATTTAATCA 115 230 1 CGGCGCGTCA 0.468655 -62 ** * ******* Masking position 7 Map Score: 12.232 Number of sites scoring better than the average of aligned sites = 2252 Number in coding regions = 2171 Number in noncoding regions = 81 Number of orfs with sites within 600 bp upstream = 75 Fraction of orfs with sites within 600 bp upstream = 0.0120463 Motif number 15 CACCCCTTATTCCCACTTTGCCCCACAATTT 1 272 0 TCCCATTTGC 0.920975 -29 TCAGAATGATTCTCAATTTGCCCG 4 4 0 TCTCATTTGC 0.668291 -297 GCCAGCGAACTCGCAGTTTGCAAGTGACGGT 30 20 1 TCGCATTTGC 0.880744 -48 CTCATGTTGCGCGCAGTCTGCGTGGTTATGA 31 30 1 GCGCATCTGC 0.739356 -181 GTTATTCACCGCCCAATTTTCGGCGGTGAAC 34 55 0 GCCCATTTTC 0.707562 -240 TTATCTTCTCGCGCAATTTACTGAATCCAGA 41 130 1 GCGCATTTAC 0.83456 -45 ATAAAAACACGCGCACTTTGCTACGGCTTCC 56 46 1 GCGCATTTGC 0.950951 -152 TACTTAGTTTGCCCAGCTTGCAAAAAGGCAT 61 36 1 GCCCACTTGC 0.884624 -168 ACGAGATGCGGCCCAATTTACTGCTTAGGAG 64 14 1 GCCCATTTAC 0.888397 -27 AACCAATCAGTCGCAGTTTGCGACAGGTAAG 72 194 1 TCGCATTTGC 0.880744 -91 GCAAATGCAAGCCCACCTTGCCCATTGACGC 76 73 1 GCCCACTTGC 0.884624 -176 TTATGATTTATCCCAATGTACTTCCCGATTA 79 22 1 TCCCATGTAC 0.447841 -145 TTGCCCAATGTGCCAGAGATGCC 105 3 1 GCCCATGTGC 0.878551 -298 GTGATGATGTTCACAATTTGCTGAATTGTGG 107 158 0 TCACATTTGC 0.533205 -130 GTTGCCAATGGCCCATTTTCCTGTCAGTAAC 107 204 1 GCCCATTTCC 0.781946 -84 TTAATCTGCCGCTCATTTTACGCATATGTCG 116 27 1 GCTCATTTAC 0.579147 -149 ***** ***** Masking position 5 Map Score: 6.95699 Number of sites scoring better than the average of aligned sites = 308 Number in coding regions = 272 Number in noncoding regions = 36 Number of orfs with sites within 600 bp upstream = 34 Fraction of orfs with sites within 600 bp upstream = 0.00546097