AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00290_ecoli_reg_300.orf -o00290_ecoli_300.ace -a/home/amcguire/genomes/ORF_ecoli.txt -z/home/amcguire/genomes/ecoli.fna -g0.51 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.51 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 b0024 102 orf, hypothetical protein #2 ileS 42 isoleucine tRNA synthetase #3 leuA 92 2-isopropylmalate synthase #4 leuL_leuO 482 leuL: leu operon leader peptide, leuO: probable transcriptional activator for leuABCD operon #5 ilvI 227 acetolactate synthase III, valine sensitive, large subunit #6 pdhR 300 transcriptional regulator for pyruvate dehydrogenase complex #7 aceE 160 pyruvate dehydrogenase (decarboxylase component) #8 leuS 234 leucine tRNA synthetase #9 malS 300 alpha-amylase #10 avtA 177 alanine-alpha-ketoisovalerate (or valine-pyruvate) transaminase, transaminase C #11 ilvB 105 acetolactate synthase I,valine-sensitive, large subunit #12 ivbL 300 ilvB operon leader peptide #13 ilvL 300 ilvGEDA operon leader peptide #14 ilvG_1 139 acetolactate synthase II, large subunit, cryptic, interrupted #15 ilvM 300 acetolactate synthase II, valine insensitive, small subunit #16 ilvD 95 dihydroxyacid dehydratase #17 ilvC 149 ketol-acid reductoisomerase #18 holC 52 DNA polymerase III, chi subunit #19 BIME233 22 BIME #20 pepA 266 aminopeptidase A/I Motif number 1 TCAAACAAAAAACCCGCGCCATTGCGCGGG 3 23 1 AACCCGCGCC 0.979743 -70 GGCATAAAAAAACCCGCGCAATGGCGCGGG 3 35 0 AACCCGCGCA 0.97164 -58 CGCTTACTTTAACCACCGCAGCACAATTAG 4 346 1 AACCACCGCA 0.98623 -137 GGATCTGAAAAACCACCTCAACGCTACATT 8 181 1 AACCACCTCA 0.825096 -54 ATTTTGCGATAACCCCCACATTTTCTGCGA 9 152 0 AACCCCCACA 0.938295 -149 CACGATTCCAAAACCCCGCCGGCGCAAACC 11 25 1 AAACCCCGCC 0.977594 -81 CTTAAACGAAAAACCCCGCCCGGTTTGCGC 11 46 0 AAACCCCGCC 0.977594 -60 AGATAACAAAAAACCCCGCCGGAGCGAGGT 12 159 0 AAACCCCGCC 0.977594 -142 GCGAGCATCATTCCACCGCCAGAACAACTC 13 63 0 TTCCACCGCC 0.76161 -238 AACGAACTAAGACCCCCGCACCGAAAGGTC 14 23 1 GACCCCCGCA 0.950245 -117 GGTCAAAAAAAACCCCCGGACCTTTCGGTG 14 41 0 AACCCCCGGA 0.916524 -99 TCCTCATGTTAGCCAGCGCCTTCGGCATCC 15 118 1 AGCCAGCGCC 0.90167 -183 CGCATCAGGTATACACCGCAGC 18 3 0 ATACACCGCA 0.844435 -50 GCGTATTTAAATCCACCACAAGAAGCCCCA 18 30 1 ATCCACCACA 0.727568 -23 TTCTATCTGTAGCCACCGCCGTTGTCTTTA 20 228 1 AGCCACCGCC 0.972254 -39 ********** Masking position 4 Map Score: 24.4519 Number of sites scoring better than the average of aligned sites = 835 Number in coding regions = 752 Number in noncoding regions = 83 Number of orfs with sites within 600 bp upstream = 82 Fraction of orfs with sites within 600 bp upstream = 0.0131706 Motif number 2 TATATGTTTTGCGATTTTTTTTGATATTGATTTGGTGA 4 172 0 GCATTTTGAT 0.807504 -311 TGCAACGCGTGCATTTTGTCCCCTTTTTCCTCGTTGAT 4 238 1 GCTTTTTCTT 0.831848 -245 GGTTTATTCTGCATTTTTTATTGAATGTAGAATTTTAT 5 43 1 GCTTTTTGTT 0.958365 -185 ATTGAATGTAGAATTTTATTCTGAATGTGTGGGCTCTC 5 62 1 GATTTTTGTT 0.965548 -166 CGTAGGAAAGGAGTTTTTTAACGATTATTAAACTATAA 6 84 0 GATTTTTGTT 0.965548 -217 TGATTTTTCTGGTAAAAATTATCCAGAAG 7 2 1 GATTTTTAAT 0.790867 -159 TAATAACGTTGAGTTTTCTGGAACCTGTCCCATTGAAC 7 114 0 GATTTTTATT 0.848014 -47 GCTCTTGACAGCTATTTTTGATATGATTTGAGATTCAA 9 51 0 GCATTTTAAT 0.455087 -250 GCTCAGGGATGAGTTTTGTTTGGCTTATCGCTGGCAAA 9 238 1 GATTTTTGTT 0.965548 -63 TACTGAAATTGAATTTTTTTCACTCACTATTTTATTTT 13 142 1 GATTTTTCAT 0.803239 -159 TTTTTTGGCCGATTTTTATGATGCGTTTAATAATTTCA 13 200 0 GATTTTTGTT 0.965548 -101 TTGAGAAACAGAATTTTGTGCTGTTATTCATTGTCTGC 14 90 0 GATTTTTGAT 0.949987 -50 TATATGACAGGAAATTTATTGCGGAAATTGATATATTC 17 60 0 GAATTTTGAT 0.836266 -90 AAATGGGGCTTCTTGTGGTGGATTTAAATACGCAT 18 28 0 GCTCTTTGTT 0.757465 -25 TGCAAAAGACGAGTTTTTACGGGCGTATTTAAA 20 6 0 GATTTTAGTT 0.719541 -261 ** **** * * * * Masking position 7 Map Score: 11.3698 Number of sites scoring better than the average of aligned sites = 158 Number in coding regions = 119 Number in noncoding regions = 39 Number of orfs with sites within 600 bp upstream = 51 Fraction of orfs with sites within 600 bp upstream = 0.00819146 Motif number 3 TGCAGAACTCACGCTGGCGGGACGTTTTTA 4 389 1 ACGCTGGCGG 0.837531 -94 CGCCCGGTTTGCGCCGGCGGGGTTTTGGAA 11 30 0 GCGCCGGCGG 0.784982 -76 GTTTCGTCAGTCGCCTGCGGCTGGTAACCG 12 131 0 TCGCCTGCGG 0.948927 -170 ACGAAACCTCGCTCCGGCGGGGTTTTTTGT 12 154 1 GCTCCGGCGG 0.979844 -147 ATGTTAGCCAGCGCCTTCGGCATCCATGGC 15 123 1 GCGCCTTCGG 0.940848 -178 GCGCCAGGCGGCACCAGCGGCCAGACGTTC 15 251 0 GCACCAGCGG 0.985292 -50 CGAAGTCATCGCAACAGCGGACATGAGTTA 20 185 1 GCAACAGCGG 0.942408 -82 AATCTTAAAGACAACGGCGGTGGCTACAGA 20 233 0 ACAACGGCGG 0.928858 -34 ********** Masking position 8 Map Score: 9.16897 Number of sites scoring better than the average of aligned sites = 904 Number in coding regions = 864 Number in noncoding regions = 40 Number of orfs with sites within 600 bp upstream = 26 Fraction of orfs with sites within 600 bp upstream = 0.00417604 Motif number 4 CCTGTTATGTAATCAAACCGAAATACGGAACCGA 2 12 1 ATCACGAAAT 0.960162 -31 AGATGCAAAAATTTATGCTGAAATATGTCAACCG 4 277 1 ATTACGAAAT 0.907809 -206 AAGCGTCGGTAGTTAAGCAGAAATTAATATCGCT 4 316 1 ATTACGAAAT 0.914323 -167 CTGATTGCAGAATAGGTCAGACATGAATGTCTGG 5 11 1 ATAGCGACAT 0.944799 -217 AAAAATGCAGAATAAACCAGACATTCATGTCTGA 5 27 0 ATAACGACAT 0.964698 -201 TATTTTTTTAATTAATCCTAAAATAGAGAGCCCA 5 91 0 ATAACAAAAT 0.697185 -137 TTAATGTATGAATAATCCGGGCATCATTTCAACG 8 97 1 ATAACGGCAT 0.837298 -138 TGCAACGCTGATTAGGGCTGACATTTTATCCTGG 10 54 0 ATAGCGACAT 0.944793 -124 ATACGTCAAAATTCGTGCCGAAATTGCGCGTTCT 12 49 1 ATCGCGAAAT 0.936561 -252 AGGGAACAACATTCATACTGAAATTGAATTTTTT 13 127 1 ATCACGAAAT 0.96014 -174 GCCTGGCGCCAGTAATTCAGAAATGTTGGAGAAA 15 272 1 ATAACGAAAT 0.96691 -29 * *** * ***** Masking position 13 Map Score: 8.37228 Number of sites scoring better than the average of aligned sites = 67 Number in coding regions = 53 Number in noncoding regions = 14 Number of orfs with sites within 600 bp upstream = 18 Fraction of orfs with sites within 600 bp upstream = 0.0028911 Motif number 5 TTGTCAATGGATTTGTGCAAATAAGCGCCG 1 80 1 ATTTGTGCAA 0.971312 -23 TTCAGCATAAATTTTTGCATCTAATCAACG 4 269 0 ATTTTTGCAT 0.886551 -214 TAAAGTCTACATTTGTGCATAGTTACAACT 6 122 1 ATTTGTGCAT 0.925345 -179 CAACTCTCAAATTTGTGAAAAATATAAGGT 9 24 0 ATTTGTGAAA 0.790835 -277 AAAACGGCTGAATTTTGCGATAACCCCCAC 9 163 0 AATTTTGCGA 0.684163 -138 ATTCCTGTTTATTTGTGCAAGTGAAGTTGA 13 35 1 ATTTGTGCAA 0.971312 -266 TGTCCGCTGCATTTTTGCGAGCATCATTCC 13 79 0 ATTTTTGCGA 0.923592 -222 TCACATTGCAATTTTTGCAACGTCAACATC 17 24 0 ATTTTTGCAA 0.95525 -126 ********** Masking position 1 Map Score: 6.15779 Number of sites scoring better than the average of aligned sites = 41 Number in coding regions = 25 Number in noncoding regions = 16 Number of orfs with sites within 600 bp upstream = 25 Fraction of orfs with sites within 600 bp upstream = 0.00401542 Motif number 6 GAAGTCAATTGGTCTTACCAATTTCATGTC 6 256 0 GGTCTTACCA 0.754437 -45 CTGTCTTATTGAGCTTTCCGGCGAGAGTTC 7 88 1 GAGCTTTCCG 0.908416 -73 CTCATCCTGTGGACTTACCGCTCAGGGATG 9 219 1 GGACTTACCG 0.959491 -82 CTTTTCCGGCTTCCCGTTCGTCAGTA 10 7 1 CGGCTTCCCG 0.984083 -171 TCCTGGTTGGCGGCTTCCCGAGGTACTGAC 10 30 0 CGGCTTCCCG 0.984083 -148 TCTTCTGGGCCGACTTTCCGGGAGGTGCTT 11 73 0 CGACTTTCCG 0.962735 -33 GCTTCAACCTGGTCTTTCCGGGTGATGTGT 15 155 0 GGTCTTTCCG 0.971379 -146 ********** Masking position 5 Map Score: 4.20625 Number of sites scoring better than the average of aligned sites = 244 Number in coding regions = 222 Number in noncoding regions = 22 Number of orfs with sites within 600 bp upstream = 22 Fraction of orfs with sites within 600 bp upstream = 0.00353357 Motif number 7 TAGAACACATTTGGGAGTTGGACC 1 1 0 TTGGAGTGAC 0.987813 -102 TTGCTGTAAGTTGTGGGATTCAGCCGATTTATTA 5 131 1 TTGGGGTTAC 0.956354 -97 AGTTAACGACCCGGGAGATGAAACG 8 2 0 CCGGAGTGAC 0.950899 -233 TTTCACAAATTTGAGAGTTGAATCTCAAATCATA 9 34 1 TTGGAGTGAC 0.987813 -267 CAAGGGAAAATTGAGGGGTTGATCACGTTTTGTA 12 198 0 TTGGGGTTAC 0.956354 -103 AGTTCGTCGATTGAGACATGAAGCAGGTATGGCC 15 214 0 TTGGACTGAC 0.921735 -87 AACGTCAACATCGAGGGCTGTCCCT 17 2 0 TCGGGGTGCC 0.884197 -148 CGGTTCGCGTTTGCGAGATTGAATTCACTATATG 17 92 0 TTGGAGTTAT 0.722549 -58 AGAACAAAATCTGAGAGGTGAATCCGTTGAGTAT 20 116 0 CTGGAGTGAC 0.975381 -151 *** *** ** * * Masking position 9 Map Score: 4.71382 Number of sites scoring better than the average of aligned sites = 110 Number in coding regions = 99 Number in noncoding regions = 11 Number of orfs with sites within 600 bp upstream = 19 Fraction of orfs with sites within 600 bp upstream = 0.00305172 Motif number 8 CGTTTCTTTTCACCTTTCCTCCTGTTTATT 5 197 1 CACCTTTCCT 0.896537 -31 CGTTAAAAAACTCCTTTCCTACGTAAAGTC 6 99 1 CTCCTTTCCT 0.932891 -202 GACGTTCTTTGTTCCTTGCTTTGCTAATAC 8 49 1 GTTCCTTGCT 0.807193 -186 CGAGATCGCTCACCCTTGCTTCTCATCCTG 9 198 1 CACCCTTGCT 0.9803 -103 TTATTGTTACCTTCCTTGCTACAGAGTTCG 10 144 1 CTTCCTTGCT 0.948076 -34 CCCCTCAATTTTCCCTTGCTGAAAAATTTT 12 214 1 TTCCCTTGCT 0.956096 -87 ATGAATGTTGTTCCCTTCCTCGTAGTTCAT 13 113 0 TTCCCTTCCT 0.943116 -188 ACAGCGAAACCACCCTTACTGATAACCCCG 15 85 1 CACCCTTACT 0.905083 -216 ********** Masking position 6 Map Score: 4.04573 Number of sites scoring better than the average of aligned sites = 128 Number in coding regions = 105 Number in noncoding regions = 23 Number of orfs with sites within 600 bp upstream = 24 Fraction of orfs with sites within 600 bp upstream = 0.0038548 Motif number 9 ATATCGCATTCATCTGGAGCTGATTTA 4 466 1 CTGGGCTGAT 0.866982 -17 AAAAATTATCCAGAAGATGTTGTAAATCAAGCGCAT 7 24 1 CAGAGTTGTA 0.439898 -137 CCTTATCTATCTAATAACGTTGAGTTTTCTGGAACC 7 127 0 CTAAGTTGAT 0.887527 -34 GCCTTTCGCGCACTCGACGTTGAAATGATGCCCGGA 8 112 0 CCGAGTTGAT 0.965384 -123 ACGTCGAGTGCGCGAAAGGCTGTTTTGACGCGGACG 8 128 1 CAAAGCTGTT 0.726595 -107 GTGGACTTACCGCTCAGGGATGAGTTTTGTTTGGCT 9 227 1 CCAGGATGAT 0.581254 -74 GGTGCTTTATCCTGCAACGCTGATTAGGGCTGACAT 10 64 0 CCAAGCTGAA 0.769251 -114 AACACGTATACTTTCAGTGTTGACATAATACAGTGT 12 89 1 CCAGGTTGAT 0.897943 -212 CATTGTCTCCCCTGTAAAGCTGTGCTTGTATAAATA 12 245 1 CTAAGCTGTT 0.859333 -56 TTTATTTGTGCAAGTGAAGTTGAGTTGTTCTGGCGG 13 42 1 CTGAGTTGAT 0.926848 -259 AGGGACAGCCCTCGATGTTGACGTTGCAAAAATT 17 9 1 CCGAGTTGAT 0.965506 -141 GGTGATTCCTCGTGATGTTGTGCTTCTTATTGTT 17 126 0 CTGAGTTGTT 0.905846 -24 TTGCGTCAGGCAAGGCTGTTAT 19 7 1 CCAAGCTGTT 0.931015 -16 CTATCTGTAGCCACCGCCGTTGTCTTTAAGATTCAG 20 230 1 CCGCGTTGTT 0.800107 -37 * *** ***** * Masking position 11 Map Score: 5.43049 Number of sites scoring better than the average of aligned sites = 512 Number in coding regions = 472 Number in noncoding regions = 40 Number of orfs with sites within 600 bp upstream = 37 Fraction of orfs with sites within 600 bp upstream = 0.00594282 Motif number 10 TAACGGCGCTTATTTGCACAAA 1 91 0 TACGCGCTTA 0.729293 -12 TCTGCTTAACTACCGACGCTTTTCATCGGTTG 4 305 0 TACACGCTTT 0.839545 -178 ATCCCACAACTTACAGCAATTTCTCTATTTTT 5 118 0 TTCGCAATTT 0.775062 -110 AGTTGTGGGATTCAGCCGATTTATTATCAATT 5 139 1 TTACCGATTT 0.703831 -89 CTACGTTTAGTTGCCGCGCTTTTATATGCGCT 7 53 0 TTCGCGCTTT 0.965612 -108 ACCCCCACATTTTCTGCGATTTAGCGCCAATC 9 139 0 TTCGCGATTT 0.975271 -162 TGAGTCCTTATTGCTGCGATTTCAGACAGTTT 9 273 0 TTCGCGATTT 0.975271 -28 CAAGATATTTTTTGGCCGATTTTTATGATGCG 13 213 0 TTGCCGATTT 0.778868 -88 CCCTTACTGATAACCCCGATTTCCTCATGTTA 15 97 1 TACCCGATTT 0.943043 -204 ATAATTATCTTAGCGACGATTTCGACGACTCA 20 86 0 TACACGATTT 0.880221 -181 ** * ******* Masking position 10 Map Score: 3.14573 Number of sites scoring better than the average of aligned sites = 440 Number in coding regions = 394 Number in noncoding regions = 46 Number of orfs with sites within 600 bp upstream = 52 Fraction of orfs with sites within 600 bp upstream = 0.00835207 Motif number 11 AAAACCCGCGCAATGGCGCGGGTTTTTTGT 3 27 0 CAATGGCGCG 0.964447 -66 GGCGAGAGTTCAATGGGACAGGTTCCAGAA 7 107 1 CAATGGGACA 0.652459 -54 ATACGGCTACAAATGTAGCGTTGAGGTGGT 8 192 0 AAATGTAGCG 0.885118 -43 AAATCGCAGAAAATGTGGGGGTTATCGCAA 9 149 1 AAATGTGGGG 0.714284 -152 GCACCCCAGCAAATGTAGCGTTATTGTTAC 10 124 1 AAATGTAGCG 0.885118 -54 ATTCGTGCCGAAATTGCGCGTTCTGCGCGG 12 59 1 AAATTGCGCG 0.702911 -242 ATGCTCGCAAAAATGCAGCGGACAAAGGAT 13 85 1 AAATGCAGCG 0.776325 -216 ATACAAAAAATGGGACGGCACGCACCG 16 8 1 AAATGGGACG 0.966625 -88 TCTGTCTCGTAAATGGGACGGTGCGTGCCG 16 26 0 AAATGGGACG 0.966625 -70 GCAAAAATTGCAATGTGACGTTGTGAATAT 17 36 1 CAATGTGACG 0.897476 -114 AAATGGGGCTTCTTGTGGTG 18 43 0 AAATGGGGCT 0.834481 -10 GTTATTACGGCATTGGCACGTCAGAACAAA 20 142 0 CATTGGCACG 0.587156 -125 ********** Masking position 2 Map Score: 5.09707 Number of sites scoring better than the average of aligned sites = 732 Number in coding regions = 647 Number in noncoding regions = 85 Number of orfs with sites within 600 bp upstream = 97 Fraction of orfs with sites within 600 bp upstream = 0.0155798 Motif number 12 TCCATATAGAACACATTTGGGAGTTGGACC 1 11 0 ACACATTTGG 0.808887 -92 AATCATCAGGATAGGTTTTGCAACGCGTGC 4 220 1 ATAGGTTTTG 0.785194 -263 TTATGTCCATACAGGTTTTGATTGAAATCA 6 197 0 ACAGGTTTTG 0.954843 -104 ACATTAATTTACAGAGTTTGTGGGCGTATT 8 74 0 ACAGAGTTTG 0.932869 -161 TGACATAGTTTCAGATTTGGACTATTCCTT 9 94 0 TCAGATTTGG 0.86695 -207 CTTCCTTGCTACAGAGTTCGACAGATATCC 10 154 1 ACAGAGTTCG 0.786823 -24 TGAGTATCGATCACAGTTTGCGTTTT 12 7 0 TCACAGTTTG 0.808107 -294 GAGGGGTTGATCACGTTTTGTACTGAATTG 12 190 0 TCACGTTTTG 0.86501 -111 AAGAGTTACCATAGGTTTTGTAAATAGTAC 13 244 0 ATAGGTTTTG 0.785194 -57 GATTCACCTCTCAGATTTTGTTCTGACGTG 20 126 1 TCAGATTTTG 0.930222 -141 ********** Masking position 7 Map Score: 3.02813 Number of sites scoring better than the average of aligned sites = 345 Number in coding regions = 301 Number in noncoding regions = 44 Number of orfs with sites within 600 bp upstream = 47 Fraction of orfs with sites within 600 bp upstream = 0.00754899 Motif number 13 TTTGAATTGTCCATATAGAACACATTTGGGAGT 1 17 0 CCATAGAAAC 0.583716 -86 CTATAAAAATCCGAATTGAACCGATTCACTTAC 6 57 0 CCGTTGAACG 0.985061 -244 TGCATAGTTACAACTTTGAAACGTTATATATGT 6 137 1 CAATTGAACG 0.732027 -164 TTTTTCAGATCCGCATAGCATAGCCCAAACGTC 8 160 0 CCGTAGCAAG 0.790131 -75 ACATTTGTAGCCGTATTGAAAACAGGACCACTG 8 206 1 CCGTTGAAAC 0.914884 -29 CGATTTAGCGCCAATCTGAATCGTTAACACGTG 9 122 0 CCACTGAACG 0.955899 -179 CTTCAACAGACCGATTTGCACCCCAGCAAATGT 10 107 1 CCGTTGCACC 0.94825 -71 AAAACCCCGCCCGGTTTGCGCCGGCGGGGTTTT 11 34 0 CCGTTGCGCG 0.886072 -72 AGTTAGTTCCCCGTCCTGAATCTTGAGAAACAG 14 117 0 CCGCTGAACT 0.821807 -23 CCCGGAAAGACCAGGTTGAAGCGGCACTCGACA 15 163 1 CCATTGAACG 0.971965 -138 GCACTCGACACCATGCTGAACAGTGATGGGCCA 15 186 1 CCACTGAAAG 0.885824 -115 *** ***** ** Masking position 1 Map Score: 2.55367 Number of sites scoring better than the average of aligned sites = 459 Number in coding regions = 426 Number in noncoding regions = 33 Number of orfs with sites within 600 bp upstream = 45 Fraction of orfs with sites within 600 bp upstream = 0.00722775 Motif number 14 TCAAAGGCCGAGGAATATGCCCTTTTAGCCT 1 45 1 AGGAATATCC 0.946317 -58 TAGATAGATAAGGAATAACCC 7 150 1 AGGAATAACC 0.98305 -11 AAATTAATGTATGAATAATCCGGGCATCATT 8 94 1 ATGAATAACC 0.899723 -141 GAGCACCCCAAGGAATAGTCCAAATCTGAAA 9 85 1 AGGAATAGCC 0.963136 -216 CGCAGCAATAAGGACTCATCCGCC 9 287 1 AGGACTCACC 0.946182 -14 ACAAATAAACAGGAATCAGCCACTAAAATTC 13 20 0 AGGAATCACC 0.979626 -281 ******** ** Masking position 6 Map Score: 2.14365 Number of sites scoring better than the average of aligned sites = 20 Number in coding regions = 12 Number in noncoding regions = 8 Number of orfs with sites within 600 bp upstream = 9 Fraction of orfs with sites within 600 bp upstream = 0.00144555 Motif number 15 ATCCGCATAGCATAGCCCAAACGTCCGCGTCAAAA 8 150 0 CATGCCACTC 0.991772 -85 CAGGATAAAGCACCGCTCACTCTTCAACAGACCGA 10 86 1 CACGCTACTC 0.956772 -92 AGCATCATTCCACCGCCAGAACAACTCAACTTCAC 13 55 0 CACGCCGCAC 0.918926 -246 TGCTGTTATTCATTGTCTGCTCCTCGGTTATGTTT 14 75 0 CATGTCGCTC 0.956772 -65 CAGTTGCTGCCATTGTCGAACCATCCCTAACCGTT 15 34 0 CATGTCACTC 0.970386 -267 CTTCGGCATCCATGGCCAACACATCACCCGGAAAG 15 137 1 CATGCCACTC 0.99176 -164 TAGCTTGTTTCATGGCTTAAACGTCATTTATTCTC 20 50 1 CATGCTACTC 0.970386 -217 *** *** * * ** Masking position 2 Map Score: 2.78166 Number of sites scoring better than the average of aligned sites = 118 Number in coding regions = 110 Number in noncoding regions = 8 Number of orfs with sites within 600 bp upstream = 7 Fraction of orfs with sites within 600 bp upstream = 0.00112432