AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00520_ecoli_reg_100.orf -o00520_ecoli_100.ace -a/home/amcguire/alignace/lib/ORF_ecoli.txt -z/skink1/amcguire/genomes/ecoli.fna -g0.51 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.51 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 dniR 71 transcriptional regulator for nitrite reductase (cytochrome c552) #2 yagG 226 putative permease #3 galE 260 UDP-galactose-4-epimerase #4 galU 201 glucose-1-phosphate uridylyltransferase #5 rspA 205 starvation sensing protein #6 ugd 248 UDP-glucose 6-dehydrogenase #7 rfbA 57 glucose-1-phosphate thymidylyltransferase #8 rfbB 300 dTDP-glucose 4,6 dehydratase #9 galF 174 homolog of Salmonella UTP--glucose-1-P uridyltransferase, probably a UDP-gal transferase #10 gatD 47 galactitol-1-phosphate dehydrogenase #11 gatB 30 galactitol-specific enzyme IIB of phosphotransferase system #12 gatZ 28 putative tagatose 6-phosphate kinase 1 #13 gatY 197 tagatose-bisphosphate aldolase 1 #14 pdxB 98 erythronate-4-phosphate dehyrogenase #15 mltB 255 membrane-bound lytic murein transglycosylase B #16 mltA 208 membrane-bound lytic murein transglycosylase A #17 mutY 160 adenine glycosylase; G.C --> T.A transversions #18 yggX 27 orf, hypothetical protein #19 mltC 61 membrane-bound lytic murein transglycosylase C #20 glgB 272 1,4-alpha-glucan branching enzyme #21 rfe 239 UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase; synthesis of enterobacterial common antigen (ECA) #22 slt 183 soluble lytic murein transglycosylase Motif number 1 GGGAAATATTCCGCAGACGGTTTTATCTCT 2 19 0 CCGCAGACGG 0.906177 -208 GGAATATTTCCCGCAGACGGCTTTGTTGTT 2 37 1 CCGCAGACGG 0.906177 -190 GCTGACCTTGCCGGAGGCGGCCTTAGCACC 3 20 1 CCGGAGGCGG 0.97371 -241 GAACCGTTGGCCGGAGAGGGTGCTAAGGCC 3 38 0 CCGGAGAGGG 0.988347 -223 ATATCAGCACCCCGAAGGGGCTAAGTTCTG 4 121 0 CCCGAAGGGG 0.904953 -81 AGCTGTAAAGCCAGGGGCGGTAGCGTGCAT 8 209 1 CCAGGGGCGG 0.939174 -92 TTTTTACCTGAGGGGGAGGTTATCCC 10 7 1 CCTGAGGGGG 0.957751 -41 TGTTTTTATGCCGGATGCGGTGTAAACATA 13 25 0 CCGGATGCGG 0.683547 -173 AAAACGGCCTCCCGATAGGGAAGCCGTAGC 13 65 0 CCCGATAGGG 0.922893 -133 GTAGTCACTGCCCGATACGGACTTTACATA 15 167 0 CCCGATACGG 0.933907 -89 ATGCAAGTTGCCGGAGGCGTGCTCCGGCAC 19 16 0 CCGGAGGCGT 0.981908 -46 TCCGGGTGCGTGTTGTGTTTG 19 51 0 CCGGGTGCGT 0.87516 -11 ********** Masking position 2 Map Score: 21.1901 Number of sites scoring better than the average of aligned sites = 817 Number in coding regions = 581 Number in noncoding regions = 236 Number of orfs with sites within 600 bp upstream = 114 Fraction of orfs with sites within 600 bp upstream = 0.0183103 Motif number 2 AAATTTCAAAAACAACAAAGCCGTCTGCGGGA 2 45 0 AACAAAAGCC 0.906639 -182 TTTTTATCTGAAAAAAGACGCGGTTTCATGCC 3 78 0 AAAAAGAGCG 0.976739 -183 ACCATAGCATAACAAAGATGCGAAAAGTGTGA 3 207 0 AACAAGAGCG 0.987352 -54 GCAAACGATAACGCGGGCTAAATTT 4 4 1 AACGAAAGCG 0.830299 -198 GCTAAGTTCTGAAAAGGAGGCGAGTTAGCATA 4 100 0 GAAAAGAGCG 0.907499 -102 GGAGTGATCACAAAAAAAGGCGTATATTTGCG 5 98 0 CAAAAAAGCG 0.932096 -108 AACCAACAATAAAATTGAGGCCCGGCGTATAT 6 19 1 AAAATGAGCC 0.728614 -230 AGATATTTGGCAAAAAAAAGCCCGGTGCAATA 6 48 0 CAAAAAAGCC 0.81122 -201 TTGACCATCGAACAACGTAGCGTTAAAACTTT 6 164 1 AACAAGTGCG 0.892557 -85 TACTGCAATCCACAACGAAGCGGCGTAACATC 9 58 1 CACAAGAGCG 0.984656 -117 TCACGCCCCGCACAAGGAAGCGGTAGTCACTG 15 187 0 CACAAGAGCG 0.984667 -69 CTTCAGGTTAAAAAATAAGGCGCAACGAAGAT 16 178 0 AAAAAAAGCG 0.943457 -31 TATCACGATAAACATAGAGGCGAAGTCCAAC 22 10 0 AACATGAGCG 0.940982 -174 ***** ** *** Masking position 2 Map Score: 16.1327 Number of sites scoring better than the average of aligned sites = 341 Number in coding regions = 298 Number in noncoding regions = 43 Number of orfs with sites within 600 bp upstream = 59 Fraction of orfs with sites within 600 bp upstream = 0.00947639 Motif number 3 TAAAATTGAGGCCCGGCGTATATTGCACCG 6 28 1 GCCCGGCGTA 0.815982 -221 CCATCGAACAACGTAGCGTTAAAACTTTTA 6 168 1 ACGTAGCGTT 0.872185 -81 ATCCACAACGAAGCGGCGTAACATCACAAG 9 65 1 AAGCGGCGTA 0.84256 -110 GTGTAAACATACGTGGCAGTGCTAT 13 6 0 ACGTGGCAGT 0.906375 -192 GCTTCCTTGTGCGGGGCGTGATGCTTTACC 15 198 1 GCGGGGCGTG 0.896409 -58 ATTTCATTAAACGCGGCGGTTTGTTATCTT 16 153 1 ACGCGGCGGT 0.982784 -56 CCACGTAAACACGTGGCGTTTTTGGCATAA 21 18 0 ACGTGGCGTT 0.988585 -222 CCACGTGTTTACGTGGCGTTTTGCTTTTAT 21 32 1 ACGTGGCGTT 0.988585 -208 AACATCGCCAGCGCGGCATTAAGATTACAG 21 64 0 GCGCGGCATT 0.967428 -176 AGTGTCCGTAACGTGGCGTAAACGGCAATG 22 122 1 ACGTGGCGTA 0.975134 -62 TAAATCTATTACGCGGCATGACGCTGCATT 22 163 1 ACGCGGCATG 0.962921 -21 ACGCGGCATGACGCTGCATTG 22 173 1 ACGCTGCATT 0.80718 -11 ********** Masking position 7 Map Score: 13.609 Number of sites scoring better than the average of aligned sites = 1270 Number in coding regions = 1207 Number in noncoding regions = 63 Number of orfs with sites within 600 bp upstream = 74 Fraction of orfs with sites within 600 bp upstream = 0.0118856 Motif number 4 GGCGGCCTTAGCACCCTCTCCGGCCAACGG 3 35 1 GCACCCTCTC 0.945335 -226 ACGGTTCGACGCATGCAGGCATGAAACCGC 3 61 1 GCATGCAGGC 0.71834 -200 TTCATGCTCTCAGAATTAACT 6 238 0 TCATGCTCTC 0.899703 -11 CCAGAGCACTGCATGCATGCCTATGATGTG 8 178 0 GCATGCATGC 0.49453 -123 TTATTTCACAGCATGCTCTGAAGTAATATG 8 270 1 GCATGCTCTG 0.933797 -31 TCGCGGCCAGGCATACTTGCGAAGATTTCA 14 27 0 GCATACTTGC 0.702891 -72 AGTATAGTGCGCATCCACGGA 16 2 0 GCATCCACGG 0.923848 -207 AATGAAATGAGCAGCCTCTCCCTGACGCAA 16 131 0 GCAGCCTCTC 0.945335 -78 CACGGCCTTATCATGCTTGCATCCGGCAAC 17 64 0 TCATGCTTGC 0.782265 -97 GGAACTTTCCGCAGCCACGGCCTTATCATG 17 79 0 GCAGCCACGG 0.823298 -82 AGCACTCTGTGCATCCTCTCTGCGTCGTCC 20 169 0 GCATCCTCTC 0.978287 -104 AATGCATGCTCTCAGAGAAAATT 21 227 0 GCATGCTCTC 0.978195 -13 AGCCGGTCGATCACCCTCGCAGTAAAAGTA 22 88 1 TCACCCTCGC 0.864878 -96 ********** Masking position 3 Map Score: 12.0574 Number of sites scoring better than the average of aligned sites = 696 Number in coding regions = 650 Number in noncoding regions = 46 Number of orfs with sites within 600 bp upstream = 49 Fraction of orfs with sites within 600 bp upstream = 0.00787022 Motif number 5 CGTCACAAAAGCAAAATAACGTAATTCGGA 2 112 1 GCAAAATAAC 0.593421 -115 ACGCATGCAGGCATGAAACCGCGTCTTTTT 3 69 1 GCATGAAACC 0.770786 -192 ACTTAATCGCGCATAAAAAACGGCTAAATT 3 144 1 GCATAAAAAA 0.901911 -117 AATAACCATAGCATAACAAAGATGCGAAAA 3 213 0 GCATAACAAA 0.696593 -48 GCCGGAGTGATCACAAAAAAAGGCGTATAT 5 103 0 TCACAAAAAA 0.386241 -103 TTGTCGTGATGCATGAAATCTACGCAACTG 5 167 0 GCATGAAATC 0.684936 -39 AAGATATTTGGCAAAAAAAAGCCCGGTGCA 6 51 0 GCAAAAAAAA 0.809765 -198 TAAACCATCAGAATAACAACGAGTTAGCAG 8 41 1 GAATAACAAC 0.632656 -260 GGAAAACTTTGAATAAAACCCTACTGCTAA 8 64 0 GAATAAAACC 0.649325 -237 TGATGCTGGCGAAAAAAATCGAACAAGCTA 9 121 1 GAAAAAAATC 0.356571 -54 ACCGCATCCGGCATAAAAACACGCGCACTT 13 34 1 GCATAAAAAC 0.971783 -164 GGAGTGAAAGGCAAAAAAACGGCCTCCCGA 13 80 0 GCAAAAAAAC 0.940981 -118 GAGATAACGATCACAAAAACGACAATATGA 13 121 0 TCACAAAAAC 0.702123 -77 AAAAAAGGTTGCATGAAAACGCGAGCGGAG 16 30 0 GCATGAAAAC 0.926069 -179 GCATGATTTTGAACAAAAACAAATCACTAA 16 80 1 GAACAAAAAC 0.835112 -129 CGCAAATTTTGCACAAAAAATAGGCTTTAG 16 106 0 GCACAAAAAA 0.870996 -103 CCGGCAACTTGCATAAAAACAAACACAACA 19 32 1 GCATAAAAAC 0.971783 -30 ********** Masking position 6 Map Score: 13.4931 Number of sites scoring better than the average of aligned sites = 886 Number in coding regions = 743 Number in noncoding regions = 143 Number of orfs with sites within 600 bp upstream = 152 Fraction of orfs with sites within 600 bp upstream = 0.0244137 Motif number 6 TCTGCGGAATATTTCCCGCAGACGGCTTTGTTGTTT 2 32 1 ATTCCGAAGC 0.617536 -195 AGCTATTCAATTAACCAGCAATGGTCATATCTTATT 2 142 0 TTACCGATTC 0.941222 -85 TGGAATCGTTTACACAAGAATTTAGCCGTTTTTTAT 3 156 0 TAACAGATGC 0.81699 -105 TTAAATTCTCCTGGACTGTTCGTGTTTTGAA 4 181 0 TTTCCGATTC 0.948851 -21 TTATTCAAAGTTTTCCAGGATTTTCCTTGTTTCCAG 8 78 1 TTTCCGATCC 0.925833 -223 CCACTCGCGCTAAACCCGAAAAATTCAAACGCTAAT 8 131 0 TAACCGAATC 0.806066 -170 ATGACTCCATTTTTCCAGGAATGGTCGCAAAT 9 7 0 TTTCCGATTC 0.948851 -168 TACGTATCCTTATACCTGAAATCTTCGCAAGTATGC 14 11 1 TAACCGATTC 0.948851 -88 CGGCAGGGTGTAAACCGGAACTTTCCGCAGCCACGG 17 89 0 TAACCGATCC 0.925833 -72 CATCTGCGCTTACTCCTGTATTACGCACTAACAGGG 20 44 0 TATCCGATGC 0.976119 -229 AGGCTGTGAATACTCATGTATTCAGCCACCCTTAAA 20 121 0 TATCAGATGC 0.837969 -152 TGACATTTTTTTGACCTGAACGGCGCAGCACTCTGT 20 189 0 TTACCGAGGC 0.851534 -84 ATGTTAGGAAAATTCCTGGAATTTGCTGGCATGTTA 21 89 1 AATCCGATGC 0.89303 -151 ** *** * * * ** Masking position 10 Map Score: 10.0583 Number of sites scoring better than the average of aligned sites = 367 Number in coding regions = 324 Number in noncoding regions = 43 Number of orfs with sites within 600 bp upstream = 53 Fraction of orfs with sites within 600 bp upstream = 0.00851269 Motif number 7 TTTATCTGAAAAAAGACGCGGTTTCATGCCT 3 77 0 AAAAGAGCGG 0.955944 -184 CATAGCATAACAAAGATGCGAAAAGTGTGAC 3 206 0 CAAAGAGCGA 0.97222 -55 TAAGTTCTGAAAAGGAGGCGAGTTAGCATAA 4 99 0 AAAGGAGCGA 0.955576 -103 ACAAGCGATGCAAGGAATCGAAC 5 193 1 CAAGGATCGA 0.860045 -13 CTGCAATCCACAACGAAGCGGCGTAACATCA 9 60 1 CAACGAGCGG 0.983586 -115 ACGCCCCGCACAAGGAAGCGGTAGTCACTGC 15 186 0 CAAGGAGCGG 0.988673 -70 TCATTTCATTAAACGCGGCGGTTTGTTATCT 16 151 1 AAACGCGCGG 0.861522 -58 TCACGATAAACATAGAGGCGAAGTCCAAC 22 9 0 CATAGAGCGA 0.86248 -175 ****** **** Masking position 2 Map Score: 5.23083 Number of sites scoring better than the average of aligned sites = 204 Number in coding regions = 194 Number in noncoding regions = 10 Number of orfs with sites within 600 bp upstream = 13 Fraction of orfs with sites within 600 bp upstream = 0.00208802 Motif number 8 CGGAGAGGGTGCTAAGGCCGCCTCCGGCAAG 3 26 0 GTAAGGCCGC 0.971608 -235 GGAAGCCGTAGCAAAGTGCGCGTGTTTTTAT 13 46 0 GAAAGTGCGC 0.957398 -152 GAGTTAACCGGACAAGTGTGCCATAATCTCG 14 54 0 GCAAGTGTGC 0.810195 -45 GTTGAGTTATGTAAAGTCCGTATCGGGCAGT 15 160 1 GAAAGTCCGT 0.969489 -96 CGCGAGCGGAGTATAGTGCGCATCCACGGA 16 10 0 GATAGTGCGC 0.779934 -199 TCAAAATCATGCCAAATCCGTGATCGGGGTA 16 61 0 GCAAATCCGT 0.651336 -148 TTTGCGTCAGGGAGAGGCTGCTCATTTCATT 16 130 1 GAGAGGCTGC 0.783481 -79 ATGCAAGCATGATAAGGCCGTGGCTGCGGAA 17 72 1 GTAAGGCCGT 0.955475 -89 CCTCACTTCAGGTAAGGCTGTGAATACTCAT 20 140 0 GTAAGGCTGT 0.858255 -133 TATTCAGAAGGGAAAGTCCGTTCCAAACCCA 21 167 0 GAAAGTCCGT 0.969489 -73 * ********* Masking position 5 Map Score: 2.51649 Number of sites scoring better than the average of aligned sites = 512 Number in coding regions = 457 Number in noncoding regions = 55 Number of orfs with sites within 600 bp upstream = 52 Fraction of orfs with sites within 600 bp upstream = 0.00835207 Motif number 9 GGGTTTAGCGCGAGTGGGTAACGCTCGTCACATCA 8 150 1 CGGGGGACGT 0.872711 -151 CTGTAAAGCCAGGGGCGGTAGCGTGCATTAATACC 8 211 1 AGGCGGACGG 0.99755 -90 ATAAAAGGATAGCGAGGGGAATGAGTTGAGTTATG 15 136 1 AGGGGGATGG 0.96374 -120 TGAGTTATGTAAAGTCCGTATCGGGCAGTGACTAC 15 162 1 AAGCCGACGG 0.957054 -94 ATTGCAGCACAGCGACGGCAGGGTGTAAACCGGAA 17 105 0 AGGCGGAGGG 0.9894 -56 ACGCACTAACAGGGGCGGCATCGCGCCCCAGATTT 20 23 0 AGGCGGACGG 0.997532 -250 AAAGTAAAAAAGTGTCCGTAACGTGGCGTAAACGG 22 112 1 AGGCCGACGG 0.994213 -72 ** * *** * ** * Masking position 10 Map Score: 3.88133 Number of sites scoring better than the average of aligned sites = 132 Number in coding regions = 124 Number in noncoding regions = 8 Number of orfs with sites within 600 bp upstream = 13 Fraction of orfs with sites within 600 bp upstream = 0.00208802 Motif number 10 TATCTTATTGATAAAATGGATTTATGTTC 5 10 0 ATAAAATGGA 0.840506 -196 TTATCAATAAGATAAGAGGAAGTGTCAGCT 5 26 1 GATAAGAGGA 0.574543 -180 AGTGTCAGCTGACAAAAGGTATTCTATTTC 5 46 1 GACAAAAGGT 0.618859 -160 GAGTGATCACAAAAAAAGGCGTATATTTGC 5 99 0 AAAAAAAGGC 0.693809 -107 AGCAAGATGAATTAAAAGGAATGATGAA 7 40 1 ATTAAAAGGA 0.834474 -18 ACCATTCCTGGAAAAATGGAGTCATACTTA 9 18 1 GAAAAATGGA 0.829445 -157 TCATCCACCTGTAAAATGGTTGCTGAATTA 9 151 0 GTAAAATGGT 0.768614 -24 CTCTGTAACAATAAAAAGGACTATTT 11 15 1 ATAAAAAGGA 0.874058 -16 TTTTTTCCTTGTTAAATGGCAGGTGCG 12 8 0 GTTAAATGGC 0.666714 -21 TGAAAGTTTGAATAAAAGGATAGCGAGGGG 15 125 1 AATAAAAGGA 0.792876 -131 GGTTGAATCTGTTAAATGGACCCCTC 15 240 1 GTTAAATGGA 0.823082 -16 GATCGGGGTAAAAAAAAGGTTGCATGAAAA 16 41 0 AAAAAAAGGT 0.732134 -168 GCGTGAGTCGATAAAGAGGATGATTT 18 12 1 ATAAAGAGGA 0.668268 -16 CAATTTGCATATCAAATGGTTAATTTTTGC 21 127 1 ATCAAATGGT 0.571919 -113 ********** Masking position 5 Map Score: 3.77263 Number of sites scoring better than the average of aligned sites = 356 Number in coding regions = 249 Number in noncoding regions = 107 Number of orfs with sites within 600 bp upstream = 121 Fraction of orfs with sites within 600 bp upstream = 0.0194346 Motif number 11 CATATTTCTGTATCGCATCCCAGTATATCA 4 145 0 TATCGCATCC 0.85789 -57 TCATGATGTTTTTAGCATCCTGATAAGAGC 6 198 0 TTTAGCATCC 0.691738 -51 CCCCTGGCTTTACAGCTACCAGAGCACTGC 8 196 0 TACAGCTACC 0.898493 -105 CAAGCTATAATTCAGCAACCATTTTACAGG 9 144 1 TTCAGCAACC 0.908668 -31 CGTATGTTTACACCGCATCCGGCATAAAAA 13 23 1 CACCGCATCC 0.901529 -175 CGCACTTTGCTACGGCTTCCCTATCGGGAG 13 57 1 TACGGCTTCC 0.939937 -141 AAGGCAAAAAAACGGCCTCCCGATAGGGAA 13 73 0 AACGGCCTCC 0.824438 -125 TTTATTACCAAACGGCAACCTAATCTAATC 15 36 1 AACGGCAACC 0.849949 -220 GGGCAGTGACTACCGCTTCCTTGTGCGGGG 15 184 1 TACCGCTTCC 0.953607 -72 AACCGGAACTTTCCGCAGCCACGGCCTTAT 17 83 0 TTCCGCAGCC 0.876679 -78 TACTCATGTATTCAGCCACCCTTAAAGAAT 20 117 0 TTCAGCCACC 0.849257 -156 ********** Masking position 6 Map Score: 4.5704 Number of sites scoring better than the average of aligned sites = 1112 Number in coding regions = 1032 Number in noncoding regions = 80 Number of orfs with sites within 600 bp upstream = 70 Fraction of orfs with sites within 600 bp upstream = 0.0112432 Motif number 12 AATAGCTCATTACACTCCATTAACACGATGTT 2 171 1 TACCTCCATA 0.838034 -56 AATTCGCTCCATTAGGCTTATGGT 3 247 0 TTCCTCCATA 0.961424 -14 TAGACTAAATTTCACTGCTTAATATTAACTTA 6 82 1 TTCCTGCTTA 0.942099 -167 TTTTTTGCCTTTCACTCCTCGAATAATTTTCA 13 92 1 TTCCTCCTCA 0.954437 -106 TGTTCTCTCCTTCAGGATTTATTG 15 3 1 TTCCTCCTTA 0.982844 -253 TGTTCTCTTCTTCAGGTTAAAAAA 16 195 0 TTCCTTCTTA 0.95088 -14 GGAACGGACTTTCCCTTCTGAATAAAGGTCTT 21 174 1 TTCCTTCTGA 0.87621 -66 *** ****** * Masking position 12 Map Score: 1.33159 Number of sites scoring better than the average of aligned sites = 40 Number in coding regions = 22 Number in noncoding regions = 18 Number of orfs with sites within 600 bp upstream = 23 Fraction of orfs with sites within 600 bp upstream = 0.00369419 Motif number 13 TTTCAAAAACAACAAAGCCGTCTGCGGGAAA 2 43 0 AACAAGCCGT 0.888587 -184 TTTATCTGAAAAAAGACGCGGTTTCATGCCT 3 77 0 AAAAGCGCGG 0.828269 -184 AGTGATCACAAAAAAAGGCGTATATTTGCGC 5 97 0 AAAAAGGCGT 0.833369 -109 ATAAAGATCGAAAAAAGCCGGAGTGATCACA 5 118 0 AAAAAGCCGG 0.96659 -88 TATTTGGCAAAAAAAAGCCCGGTGCAATATA 6 46 0 AAAAAGCCCG 0.827238 -203 GTTTATATAAAACAACGGCAGGAAGATTCGC 8 15 0 AACAAGGCAG 0.900842 -286 TCATTTCATTAAACGCGGCGGTTTGTTATCT 16 151 1 AAACGGGCGG 0.885946 -58 AAACAGTGCCGGAGCACGCCTC 19 2 1 AACAGGCCGG 0.983443 -60 ATTACGCACTAACAGGGGCGGCATCGCGCCC 20 30 0 AACAGGGCGG 0.983443 -243 GAATTTTCCTAACATCGCCAGCGCGGCATTA 21 73 0 AACATGCCAG 0.69148 -167 ***** ***** Masking position 2 Map Score: 4.2988 Number of sites scoring better than the average of aligned sites = 1034 Number in coding regions = 947 Number in noncoding regions = 87 Number of orfs with sites within 600 bp upstream = 74 Fraction of orfs with sites within 600 bp upstream = 0.0118856 Motif number 14 ********** No masking Map Score: -1.18352e-11 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 15 TAATTATGCTAACTCGCCTCCTTTTCAGAAC 4 96 1 ACTCGCCTCC 0.978575 -106 CCGGCATAAAAACACGCGCACTTTGCTACGG 13 41 1 ACACGCGCAC 0.911294 -157 GTGTGCCATAATCTCGCGGCCAGGCATACTT 14 39 0 ACTCGCGGCC 0.941859 -60 ATGGTAAAGCATCACGCCCCGCACAAGGAAG 15 199 0 ACACGCCCCG 0.976697 -57 CTGTGCTGCAATCTTGCCCCCAACAACAGTG 17 128 1 ACTTGCCCCC 0.949232 -33 ACAGTGCCGGAGCACGCCTCCGGCAACTTGC 19 13 1 ACACGCCTCC 0.983464 -49 AAACAAACACAACACGCACCCGGA 19 48 1 ACACGCACCC 0.971205 -14 CAGGGGCGGCATCGCGCCCCAGATTTAATGA 20 18 0 ACGCGCCCCA 0.927216 -255 * ********* Masking position 1 Map Score: 3.91414 Number of sites scoring better than the average of aligned sites = 393 Number in coding regions = 365 Number in noncoding regions = 28 Number of orfs with sites within 600 bp upstream = 30 Fraction of orfs with sites within 600 bp upstream = 0.0048185