AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00720_ecoli_reg_300.orf -o00720_ecoli_300.ace -a/home/amcguire/alignace/lib/ORF_ecoli.txt -z/skink1/amcguire/genomes/ecoli.fna -g0.51 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.51 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 acnB 300 aconitate hydrase B #2 citC 291 citrate lyase synthetase (citrate (pro-3S)-lyase ligase #3 sdhC 300 succinate dehydrogenase, cytochrome b556 #4 BIME45 63 BIME #5 sucC 85 succinyl-CoA synthetase, beta subunit #6 icdA 201 isocitrate dehydrogenase, specific for NADP+ #7 acnA 300 aconitate hydrase 1 #8 fumC 142 fumarase C= fumarate hydratase Class II; isozyme #9 fumA 198 fumarase A = fumarate hydratase Class I; aerobic isozyme #10 ppsA 300 phosphoenolpyruvate synthase #11 mdh 300 malate dehydrogenase #12 ppc 249 phosphoenolpyruvate carboxylase #13 argE 153 acetylornithine deacetylase #14 acs 300 acetyl-CoA synthetase #15 fumB 77 fumarase B= fumarate hydratase Class I; anaerobic isozyme #16 dcuB 300 anaerobic dicarboxylate transport #17 frdA 294 fumarate reductase, anaerobic, flavoprotein subunit Motif number 1 CGCTCTCATTGTCATAGTGCGGCAGGCGATTCTCTTCAC 1 260 0 GTAGCGGCAA 0.989985 -41 GGGTGTTCCGGAGACCTGGCGGCAGTATAGGCTGTTCAC 3 67 0 GAAGCGGCAA 0.985711 -234 GCGTTATTAGGCTATAATGCGGCAATTCATAATCTCTGA 6 18 0 GCAGCGGCAA 0.996695 -184 AAACGCATATGCAACGTGGTGGCAGACGAGCAAACCAGT 6 153 1 GCAGTGGCAA 0.986792 -49 TGGCAGACGAGCAAACCAGTAGCGCTCGAAGGAGAGGTG 6 172 1 GCAGTAGCGA 0.815409 -30 TAAAAGAGGAGAAACCTTGTGGCAAAGCAAATGACAACC 7 169 0 GAAGTGGCAA 0.944714 -132 ATTTTGTGGATTAAGGTCGCGGCAGCGGAGCAACATATC 11 242 1 TTAGCGGCAA 0.886216 -59 GTTTGCTGAAGCGATTTCGCAGCATTTGACGTCACCGCT 12 110 1 GCAGCAGCAA 0.978932 -140 GTAGAATTGTGCAAATAAACGGCAGGGTAATTTTTGAAG 14 170 0 GCAACGGCAA 0.978932 -131 CGTGCCGCCCGTGACTACGCGGCACGCCATTTTCGAATA 15 21 1 GTAGCGGCAA 0.989985 -57 AAGTCTACTCGCAACGCGACGGCGAGACAAATTTTACGC 17 12 1 GCAACGGCGA 0.946902 -283 ** * ****** * Masking position 4 Map Score: 13.8948 Number of sites scoring better than the average of aligned sites = 422 Number in coding regions = 387 Number in noncoding regions = 35 Number of orfs with sites within 600 bp upstream = 40 Fraction of orfs with sites within 600 bp upstream = 0.00642467 Motif number 2 GGTGATAATCACCTTTCTCAACGAATCCCAAGA 1 54 0 ACTTCCAACG 0.552926 -247 AGCGTGAAGAGAATCGCCTGCCGCACTATGACA 1 257 1 GATGCTGCCG 0.964916 -44 AAATAAATCAAAATTTCACGCCGAAATACTCCT 2 213 1 AATTCCGCCG 0.918712 -79 TGGAAGCAGTGTTTTGCATGACGCGCAGTTATA 3 151 1 GTTGCTGACG 0.886407 -150 AATAACGCGCATCTTTCATGACGGCAAACAATA 6 49 1 ATTTCTGACG 0.841399 -153 GATAACACAAACATCGCGTAACGATTTGATAAC 7 220 0 ACTGCTAACG 0.876821 -81 AGTGAGCTAAAAGTTGCTTAACGAAAGCAAAAC 8 86 1 AATGCTAACG 0.919128 -57 GAAGAGAGCAGATTTGCGCAACGCTGGGATCAG 10 151 1 GATGCCAACG 0.743888 -150 TTTTAAGCAGAATTTGCATGCCGTGACGCAGGC 11 14 0 AATGCTGCCG 0.98486 -287 GGTGGTGACAATATACCCTACCGTTCAGCCAAA 11 77 0 ATTCCTACCG 0.719713 -224 ATAAACGCTAAACTTGCGTGACTACACATTCTT 11 185 1 AATGCTGACT 0.668157 -116 GACCTTCAAAAATTACCCTGCCGTTTATTTGCA 14 167 1 AATCCTGCCG 0.939399 -134 ATGCACTTTGCGTGCCGCCCGTGACTA 15 5 1 ACTGCTGCCG 0.976043 -73 TGTTATTCGAAAATGGCGTGCCGCGTAGTCACG 15 30 0 AATGCTGCCG 0.98486 -48 CCTGCGTAAAATTTGTCTCGCCGTCGCGTTGCG 17 21 0 ATTTCCGCCG 0.854265 -274 ** * ** ***** Masking position 4 Map Score: 13.2945 Number of sites scoring better than the average of aligned sites = 863 Number in coding regions = 810 Number in noncoding regions = 53 Number of orfs with sites within 600 bp upstream = 55 Fraction of orfs with sites within 600 bp upstream = 0.00883392 Motif number 3 TCCCTCCGTAAAAACTTCGTTAATTCGCATGGT 1 84 0 AAACTCGTAA 0.911452 -217 TGTTTACAAAAAAGCAACATAAAAAAGTGGCTG 1 145 0 AAACACATAA 0.889509 -156 TAAACAGATTAACACCTCGTCAAAATCCTGCTA 1 172 1 AACCTCGTAA 0.760036 -129 CCTAAGGAGTATTTCGGCGTGAAATTTTGATTT 2 217 0 ATTCGCGTAA 0.929655 -75 AGTGGGATTAATTTCCACATTAAAACAGGGATT 9 15 0 ATTCACATAA 0.801597 -184 TTAAAGCAAGAATCCTACGGGAAGTAACCTGGA 9 49 1 AATCACGGAA 0.889344 -150 CTCTTCGACAATTTCCACATAAACCATCGGTAT 10 124 0 ATTCACATAA 0.801597 -177 ACGGCATGCAAATTCTGCTTAAAAGTAAATTAA 11 23 1 AATCGCTTAA 0.751855 -278 CCGTTCAGCCAAAACAACATCAATTTGATAACA 11 57 0 AAACACATAA 0.889509 -244 ACGCTTATTTAAAGCGTCGTGAATTTAATGACG 12 57 1 AAACTCGTAA 0.911453 -193 CGTCTTTTATAAAGCCACGTAAAAGCGGTGACG 12 139 0 AAACACGTAA 0.957864 -111 TATTCGCGCCAATGCGACGTGAAGGATACAGGG 12 193 1 AATCACGTAA 0.967677 -57 TTTATTCATAAATACTGCATGAATATTGATACT 13 107 1 AATCGCATAA 0.924707 -47 TTGGCTGATTAAAGCAGCGGCAAATTTATGCAC 16 137 0 AAACGCGGAA 0.876075 -164 CCGCTGTTTGATTCCTGCGTAAAATTTGTCTCG 17 34 0 ATTCGCGTAA 0.929655 -261 *** * **** ** Masking position 12 Map Score: 11.8948 Number of sites scoring better than the average of aligned sites = 338 Number in coding regions = 302 Number in noncoding regions = 36 Number of orfs with sites within 600 bp upstream = 45 Fraction of orfs with sites within 600 bp upstream = 0.00722775 Motif number 4 TAGGGTAAATGCCCAGTACCGCAACGGGCAGAATA 1 203 0 GCCCGTACGC 0.893318 -98 GCTCGGGACAACCCGCAAGGAAAACA 2 2 0 ACCCCAAGAC 0.856831 -290 ACGCTGTCTGACCCGCAAGCAGACCGGAGGAAGGA 3 190 1 ACCCCAAGAC 0.856831 -111 GAATAACGCCCACATGCTGTTCTTATTATTCC 3 279 0 GCCCCATGTC 0.884151 -22 GACCGACAATGCCCGGAAGCGATACGAAATATTCG 5 15 1 GCCCGAAGGC 0.996397 -71 GAGGAGTTCGGCCCAGAAGAGCATCGACAGAGAAA 7 95 0 GCCCGAAGGC 0.996397 -206 TTTAATATTCACCCTGAAGAGAATCAGGGCTTCGC 7 253 1 ACCCGAAGGC 0.985612 -48 TAAAAAAACCGCCCCGAAGGGCGGCTCTGT 8 6 0 GCCCGAAGGC 0.99599 -137 CGGAACACCCGCCCAGAGCATAACCAAACCAGGCA 9 159 1 GCCCGAGCTC 0.86382 -40 ATACTATCATGACCAGAGGTGTGTCAACA 13 135 1 GACCGAGGGC 0.914172 -19 GCCCCTATGTGTAACAAATAACCAC 14 1 1 GCCCTATGGC 0.907054 -300 **** **** * * Masking position 4 Map Score: 10.0046 Number of sites scoring better than the average of aligned sites = 273 Number in coding regions = 246 Number in noncoding regions = 27 Number of orfs with sites within 600 bp upstream = 30 Fraction of orfs with sites within 600 bp upstream = 0.0048185 Motif number 5 TCAAAATTTAAACTACCGCCTCTTTATACT 1 20 0 AACTACCGCC 0.898104 -281 TGTTCAGGATAAAACCCGACAAACTATATG 3 16 1 AAAACCCGAC 0.961358 -285 CGGAGGAAGGAAATCCCGACGTCTCCAGGT 3 214 1 AAATCCCGAC 0.901065 -87 ATCGACAGAGAAAACGCGCCCATCCAGGAC 7 78 0 AAAACGCGCC 0.95436 -223 TGCCATGTAAAAAAACCGCCCCGAAGGGCG 8 18 0 AAAAACCGCC 0.97702 -125 AGGGCAACGGAACACCCGCCCAGAGCATAA 9 152 1 AACACCCGCC 0.984024 -47 GGAAATGTTAAAAAATCGCCCCAAGTAACA 12 20 0 AAAAATCGCC 0.846505 -230 TGAGCGTAATAAAACCCACCAGCCGTAAGG 13 64 0 AAAACCCACC 0.923933 -90 ********** Masking position 2 Map Score: 6.63307 Number of sites scoring better than the average of aligned sites = 500 Number in coding regions = 413 Number in noncoding regions = 87 Number of orfs with sites within 600 bp upstream = 70 Fraction of orfs with sites within 600 bp upstream = 0.0112432 Motif number 6 AGGTGTTAATCTGTTTACAAAAAAGCAACAT 1 158 0 CTGTTACAAA 0.962951 -143 GCAGTATAGGCTGTTCACAAAATCATTACAA 3 54 0 CTGTTACAAA 0.962951 -247 TCAATTTGGGTTGTTATCAAATCGTTACGCG 7 208 1 TTGTTTCAAA 0.942193 -93 GACCAAACATTTGTTATCAAATGGTAAATAA 8 53 1 TTGTTTCAAA 0.942193 -90 GTCTCAGTTTTTGTTAAAAAAGTGTGTAGGA 9 101 1 TTGTTAAAAA 0.721327 -98 AAATGAAATGCTGTTTTCATAAAAAATAAAA 10 79 0 CTGTTTCATA 0.851607 -222 AGTAAATTAATTGTTATCAAATTGATGTTGT 11 46 1 TTGTTTCAAA 0.942193 -255 GTTATGCATGCTGTTGAAAAAGAGGAAGATA 14 99 0 CTGTTAAAAA 0.836507 -202 TTTGTATGAACTGTTTTCAGAGCCTGACTAA 16 218 0 CTGTTTCAGA 0.8948 -83 ***** ***** Masking position 5 Map Score: 6.61614 Number of sites scoring better than the average of aligned sites = 89 Number in coding regions = 62 Number in noncoding regions = 27 Number of orfs with sites within 600 bp upstream = 30 Fraction of orfs with sites within 600 bp upstream = 0.0048185 Motif number 7 ATTCTCTTCACGCTCCTGTGAGACAGCAGTTTGT 1 237 0 CGCCGTGGAC 0.992534 -64 TCCTTGACCCCGCTGCGGCGGGGTTGTCATTTGC 7 148 1 CGCCGCGGGT 0.990255 -153 ATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAG 7 275 1 CGCCCTGCAT 0.762022 -26 TAACGTTCTACGCTTCTGTGCGTTTTTAATTTAT 10 18 0 CGCCGTGGTT 0.935528 -283 AGCAGATTTGCGCAACGCTGGGATCAGTCTTAAA 10 157 1 CGCCCTGGAT 0.961133 -144 GGATTAAGGTCGCGGCAGCGGAGCAACATATCTT 11 249 1 CGCCGCGAGC 0.944092 -52 TTGACGTCACCGCTTTTACGTGGCTTTATAAAAG 12 135 1 CGCTACGGGC 0.833089 -115 CGAGCATATTCGCGCCAATGCGACGTGAAGGATA 12 187 1 CGCCATGGAC 0.977563 -63 GCGTGCCGCCCGTGACTACGCGGCACGCCATTTT 15 20 1 CGTCACGGGC 0.907055 -58 CTACTCGCAACGCGACGGCGAGACAAATTTTACG 17 16 1 CGCCGCGGAC 0.994426 -279 CCCTGAAGTACGTGGCTGTGGGATAAAAACAATC 17 259 1 CGTCGTGGAT 0.915024 -36 *** * *** *** Masking position 1 Map Score: 8.5738 Number of sites scoring better than the average of aligned sites = 926 Number in coding regions = 791 Number in noncoding regions = 135 Number of orfs with sites within 600 bp upstream = 80 Fraction of orfs with sites within 600 bp upstream = 0.0128493 Motif number 8 GGGTAAATGCCCAGTACCGCAACGGGCAGA 1 206 0 CCAGTACCGC 0.701966 -95 TGAAGAGAATCGCCTGCCGCACTATGACAA 1 261 1 CGCCTGCCGC 0.975497 -40 TGCGGGTTGTCCCGAGCCTCTTTGACGGAT 2 20 1 CCCGAGCCTC 0.887543 -272 TGAACAGCCTATACTGCCGCCAGGTCTCCG 3 68 1 ATACTGCCGC 0.620948 -233 ACCCTGCAATCCCGAGCCACCCAGCGTTGT 3 102 1 CCCGAGCCAC 0.952248 -199 GCAAATGACAACCCCGCCGCAGCGGGGTCA 7 152 0 ACCCCGCCGC 0.905494 -149 ACAGAGCCGCCCTTCGGGGC 8 1 1 ACAGAGCCGC 0.910679 -142 GGGAAGTAACCTGGAGCCGCAAAAAGTCGT 9 67 1 CTGGAGCCGC 0.784517 -132 GAATTTGCATGCCGTGACGCAGGCATG 11 8 0 GCCGTGACGC 0.80609 -293 ATATGTTGCTCCGCTGCCGCGACCTTAATC 11 250 0 CCGCTGCCGC 0.968034 -51 ATTACCCCAGACACCCCATCTTAT 12 236 0 CCCCAGACAC 0.652678 -14 TTCAAAAATTACCCTGCCGTTTATTTGCAC 14 171 1 ACCCTGCCGT 0.698875 -130 ATGCACTTTGCGTGCCGCCCGTGACTAC 15 9 1 TGCGTGCCGC 0.816368 -69 ATTCGAAAATGGCGTGCCGCGTAGTCACGG 15 29 0 GGCGTGCCGC 0.923792 -49 TGTTTTTATCCCACAGCCACGTACTTCAGG 17 260 0 CCACAGCCAC 0.834224 -35 ********** Masking position 8 Map Score: 8.08174 Number of sites scoring better than the average of aligned sites = 3419 Number in coding regions = 3255 Number in noncoding regions = 164 Number of orfs with sites within 600 bp upstream = 151 Fraction of orfs with sites within 600 bp upstream = 0.0242531 Motif number 9 TAATCTGTTTACAAAAAAGCAACATAAAAAAGT 1 150 0 ACAAAACAAC 0.938696 -151 AAATCATTAAATAAATAAAAAACCACTAACTCT 2 175 1 ATAAAAAAAC 0.870015 -117 CAAGCCAATTACAAATCATTAACAAAAAATTGC 6 94 1 ACAAAATAAC 0.971421 -108 TTATCTCAACACAAAATAATAACCGTTAAGGGT 7 12 1 ACAAAATAAC 0.971421 -289 TGAAAGCATAAATTAAAAACGCACAGAAGC 10 8 1 ATAAAAAAAC 0.870015 -293 CGCTTATGCCACATATTATTAACATCCTACAAG 14 266 1 ACATAATAAC 0.842725 -35 TGAGAACAAAAAATAGACCGATAAATAT 16 6 1 ACAAAAAGAC 0.888164 -295 ATAACAGCAAACAAAACATTAACATCTGCGCAG 16 46 1 ACAAAATAAC 0.971421 -255 TCTGCGCAGTACAAACTATAAACCCATCGCCAG 16 70 1 ACAAAAAAAC 0.971421 -231 ***** * **** Masking position 8 Map Score: 5.77254 Number of sites scoring better than the average of aligned sites = 48 Number in coding regions = 23 Number in noncoding regions = 25 Number of orfs with sites within 600 bp upstream = 32 Fraction of orfs with sites within 600 bp upstream = 0.00513974 Motif number 10 GCCGGAGAAGGCGATAATGCCTTATCCGGT 4 37 0 GCGATAATGC 0.97564 -27 GGGTGACCGACAATGCCCGGAAGCGA 5 7 1 CCGACAATGC 0.847086 -79 GCGTTATTAGGCTATAATGCGGCAATTCAT 6 27 0 GCTATAATGC 0.798866 -175 CAGAGAAAACGCGCCCATCCAGGACCAATA 7 73 0 GCGCCCATCC 0.832654 -228 TTGGAATGTTGCGCTAATGCATAAGCGACT 11 112 1 GCGCTAATGC 0.984389 -189 CGCAAGTTTAGCGTTTATGCATTTAATTGC 11 173 0 GCGTTTATGC 0.818298 -128 GAGCATATTCGCGCCAATGCGACGTGAAGG 12 188 1 GCGCCAATGC 0.981497 -62 CCTACATTTAACGCTTATGCCACATATTAT 14 255 1 ACGCTTATGC 0.72461 -46 GTGAACCCTCGCGATAATCCTATTTAAATT 16 279 0 GCGATAATCC 0.925142 -22 ********** Masking position 7 Map Score: 5.52729 Number of sites scoring better than the average of aligned sites = 570 Number in coding regions = 537 Number in noncoding regions = 33 Number of orfs with sites within 600 bp upstream = 36 Fraction of orfs with sites within 600 bp upstream = 0.0057822 Motif number 11 CTCGTCAAAATCCTGCTATTCTGCCCGTTG 1 187 1 TCCTGCTATT 0.845009 -114 TATCGCCTTCTCCGGCAATTGAA 4 51 1 TCCGGCAATT 0.978696 -13 TAGGCTATAATGCGGCAATTCATAATCTCT 6 20 0 TGCGGCAATT 0.969268 -182 GGTTCCTGATTACGGCAATTAAATGCATAA 11 159 1 TACGGCAATT 0.953243 -142 GGTCATTGTAAACGGCAATTTTGTGGATTA 11 225 1 AACGGCAATT 0.898543 -76 TGACGTAAATTCCTGCTATTTATTCGTTTG 12 85 1 TCCTGCTATT 0.845009 -165 TGATTAAAGCAGCGGCAAATTTATGCACTG 16 135 0 AGCGGCAAAT 0.740157 -166 ********** Masking position 8 Map Score: 2.13185 Number of sites scoring better than the average of aligned sites = 288 Number in coding regions = 241 Number in noncoding regions = 47 Number of orfs with sites within 600 bp upstream = 31 Fraction of orfs with sites within 600 bp upstream = 0.00497912 Motif number 12 ATTTCCTTCCTCCGGTCTGCTTGCGGGTCA 3 198 0 TCCGGTCTGC 0.991259 -103 TAATGCCTTATCCGGTCTACAGTGCAGGTG 4 23 0 TCCGGTCTAC 0.986548 -41 ATACGAAATATTCGGTCTACGGTTTAAAAG 5 36 1 TTCGGTCTAC 0.964144 -50 ACCTGAAAGTTACGGTCTGCGAACGCTATT 17 224 0 TACGGTCTGC 0.976522 -71 ********** Masking position 6 Map Score: 1.89212 Number of sites scoring better than the average of aligned sites = 24 Number in coding regions = 16 Number in noncoding regions = 8 Number of orfs with sites within 600 bp upstream = 2 Fraction of orfs with sites within 600 bp upstream = 0.000321234 Motif number 13 ATCCTTAACGATTCAGCCACTTTTTTATGTTG 1 132 1 ATTCACACTT 0.951617 -169 ATGTATTTTGATTCAACATTTTAATTACATCC 2 46 0 ATTCACTTTT 0.641134 -246 CATTAAATCAATTAAATCACTTAAACCTGCGA 2 110 1 ATTAATACTT 0.784281 -182 AATTACATTAATTAAAAAACTTAAAATCATTA 2 152 1 ATTAAAACTT 0.673393 -140 AATCATTACAATTAACCTACATATAGTTTGTC 3 33 0 ATTAACACAT 0.727687 -268 TTTTGCTTTCGTTAAGCAACTTTTAGCTCACT 8 86 0 GTTAACACTT 0.798411 -57 TGCTTGAACGATTCACCGTTTTTTTCATCCGG 10 208 1 ATTCACTTTT 0.641134 -93 TTTGATAACAATTAATTTACTTTTAAGCAGAA 11 35 0 ATTAATACTT 0.784281 -266 CGGGGCTATTCACCTTCTTATGTCTGGTT 13 8 1 ATTCACTCTT 0.920613 -146 TCCTCAAAGAATTAATCAACTTTTGTTGCTGA 14 137 1 ATTAACACTT 0.95461 -164 TAGTAATTAAATTAATCATCTTCAGTGATAAT 17 102 1 ATTAACTCTT 0.925373 -193 ***** * **** Masking position 5 Map Score: 3.42181 Number of sites scoring better than the average of aligned sites = 148 Number in coding regions = 124 Number in noncoding regions = 24 Number of orfs with sites within 600 bp upstream = 33 Fraction of orfs with sites within 600 bp upstream = 0.00530035 Motif number 14 GACGGTTCTCCTCGCTCTCATTGTC 1 286 0 GTTTCCTCGC 0.903845 -15 TGTTTTCCTTGCGGGTTGTCCC 2 2 1 GTTTCCTTGC 0.980359 -290 GGTATATCTTTTTCTCCTTTCGCTATACATC 2 249 0 TTTTCCTTTC 0.870761 -43 TCCTTCCTCCGGTCTGCTTGCGGGTCAGACA 3 194 0 GGTTGCTTGC 0.903845 -107 TTTTCTTTCTGTTTTGCTTTCGTTAAGCAAC 8 98 0 GTTTGCTTTC 0.94829 -45 ACCTGATTAATTTTTTCTTTCTGTTTTGCTT 8 110 0 TTTTTCTTTC 0.51036 -33 GCGTTTTTAATTTATGCTTTCA 10 2 0 TTTTGCTTTC 0.870761 -299 TTTCTGCGCATTTATCTTTGCATATTTAACC 10 238 0 TTTTCTTTGC 0.738577 -63 GGAACATGCAGTTATGCATGCTGTTGAAAAA 14 109 0 GTTTGCATGC 0.8638 -192 GCTTTTGTTCTCCTTGTAGGATGTTAA 14 284 0 GTTTCCTTGT 0.797279 -17 AGATGTTAATGTTTTGTTTGCTGTTATCTTA 16 42 0 GTTTGTTTGC 0.884922 -259 *** ******* Masking position 5 Map Score: 4.48359 Number of sites scoring better than the average of aligned sites = 508 Number in coding regions = 447 Number in noncoding regions = 61 Number of orfs with sites within 600 bp upstream = 72 Fraction of orfs with sites within 600 bp upstream = 0.0115644 Motif number 15 ********** No masking Map Score: 7.8184e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0