AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i02010_ecoli_reg_300.orf -o02010_ecoli_300.ace -a/home/amcguire/alignace/lib/ORF_ecoli.txt -z/skink1/amcguire/genomes/ecoli.fna -g0.51 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.51 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: BIME185 97 BIME BIME89 108 BIME BIME174 101 BIME Input sequences: #1 tbpA 163 thiamin-binding periplasmic protein #2 yabN 83 putative transport protein #3 BIME8 209 BIME #4 mrcB 195 peptidoglycan synthetase; penicillin-binding protein 1B #5 fhuA 219 outer membrane protein receptor for ferrichrome, colicin M, and phages T1, T5, and phi80 #6 fhuC 50 ATP-binding component of hydroxymate-dependent iron transport #7 yaeC 39 putative lipoprotein #8 abc 187 ATP-binding component of a transporter #9 insA_2 300 IS1 protein InsA #10 tauA 300 taurine transport system periplasmic protein #11 ybbL 145 putative ATP-binding component of a transport system #12 fepA 300 outer membrane receptor for ferric enterobactin (enterochelin) and colicins B and D #13 fepD 110 ferric enterobactin (enterochelin) transport #14 fepB 300 ferric enterobactin (enterochelin) binding protein; periplasmic component #15 gltJ 169 glutamate/aspartate transport system permease #16 ybeJ 249 putative periplasmic binding transport protein #17 trs5_3 300 IS5 transposase #18 b0762 128 orf, hypothetical protein #19 modA 166 molybdate-binding periplasmic protein; permease #20 glnP 138 glutamine high-affinity transport system; membrane component #21 glnH 300 periplasmic glutamine-binding protein; permease #22 ybiK 203 putative asparaginase #23 potF 300 periplasmic putrescine-binding protein; permease protein #24 artJ 173 arginine 3rd transport system periplasmic binding protein #25 BIME55 30 BIME #26 artP 217 ATP-binding component of 3rd arginine transport system #27 ybjP 125 putative enzyme #28 ycbP 300 orf, hypothetical protein #29 potA 249 ATP-binding component of spermidine/putrescine transport #30 oppA 300 oligopeptide transport; periplasmic binding protein #31 oppB 85 oligopeptide transport permease protein #32 sapA 248 homolog of Salmonella peptide transport periplasmic protein #33 BIME71 30 BIME #34 ymjA 133 orf, hypothetical protein #35 ycjJ 248 putative amino acid/amine transport protein #36 b1297 121 putative glutamine synthetase (EC 6.3.1.2) #37 pspA 151 phage shock protein, inner membrane protein #38 pspB 53 phage shock protein #39 pspE 74 phage shock protein #40 ycjM 185 putative polysaccharide hydrolase #41 ycjQ 30 putative oxidoreductase #42 b1329 300 putative transport periplasmic protein #43 b1438 39 orf, hypothetical protein #44 b1439 78 multi modular; putative transcriptional regulator; also putative ATP-binding component of a transport system #45 b1440 244 putative transport protein #46 b1488 257 orf, hypothetical protein #47 b1490 300 orf, hypothetical protein #48 b1513 248 putative ATP-binding component of a transport system #49 btuE 62 vitamin B12 transport #50 btuC 100 vitamin B12 transport permease protein #51 pheS 283 phenylalanine tRNA synthetase, alpha-subunit #52 pheM 122 phenylalanyl-tRNA synthetase (pheST) operon leader peptide #53 rplT 52 50S ribosomal subunit protein L20, and regulator #54 rpmI 96 50S ribosomal subunit protein A #55 thrS 300 threonine tRNA synthetase #56 xthA 300 exonuclease III #57 ydjX 118 orf, hypothetical protein #58 yebL_yebM 24 yebL: putative adhesin, yebM: putative ATP-binding component of a transport system #59 araH_2 23 high-affinity L-arabinose transport system; membrane protein, fragment 2 #60 araG 69 ATP-binding component of high-affinity L-arabinose transport system #61 araF 300 L-arabinose-binding periplasmic protein #62 fliY 87 putative periplasmic binding transport protein #63 fliA 178 flagellar biosynthesis; alternative sigma factor 28; regulation of flagellar operons #64 fliC 265 flagellar biosynthesis; flagellin, filament structural protein #65 yehZ 143 putative transport system permease protein #66 BIME97 33 BIME #67 bglX 195 beta-D-glucoside glucohydrolase, periplasmic #68 mglA 60 ATP-binding component of methyl-galactoside transport and galactose taxis #69 mglB 279 galactose-binding transport protein; receptor for galactose taxis #70 galS 141 mgl repressor, galactose operon inducer #71 folE 257 GTP cyclohydrolase I #72 spr 300 putative lipoprotein #73 rtn 180 orf, hypothetical protein #74 yejA 75 orf, hypothetical protein #75 ccmC 41 heme exporter protein C #76 napF 300 ferredoxin-type protein: electron transfer #77 hisQ 89 histidine transport system permease protein #78 hisJ 220 histidine-binding periplasmic protein of high-affinity histidine transport system #79 argT 265 lysine-, arginine-, ornithine-binding periplasmic protein #80 ubiX 94 3-octaprenyl-4-hydroxybenzoate carboxy-lyase #81 purF 36 amidophosphoribosyltransferase = PRPP amidotransferase #82 cvpA 165 membrane protein required for colicin V production #83 folC 69 dihydrofolate:folylpolyglutamate synthetase; dihydrofolate synthetase #84 accD 155 acetylCoA carboxylase, carboxytransferase component, beta subunit #85 dedA 82 orf, hypothetical protein #86 usg 65 putative PTS system enzyme II A component #87 pdxB 98 erythronate-4-phosphate dehyrogenase #88 cysW 300 sulfate transport system permease W protein #89 cysP 300 thiosulfate binding protein #90 yphD 24 putative transport system permease protein #91 yphE 22 putative ATP-binding component of a transport system #92 yphF 96 putative LACI-type transcriptional regulator #93 proV 300 ATP-binding component of transport system for glycine, betaine and proline #94 proX 57 high-affinity transport system for glycine betaine and proline #95 b3020 132 putative transport periplasmic protein #96 b3022 204 orf, hypothetical protein #97 b3023 52 orf, hypothetical protein #98 ygiW 151 orf, hypothetical protein #99 yrbF 209 putative ATP-binding component of a transport system #100 yhdW 300 putative periplasmic binding transport protein #101 yhdX 49 putative transport system permease protein #102 yhdY 98 putative transport system permease protein #103 ugpA 21 sn-glycerol 3-phosphate transport system, integral membrane protein #104 BIME167 47 BIME #105 ugpB 238 sn-glycerol 3-phosphate transport system; periplasmic binding protein #106 BIME168 126 BIME #107 livH 47 high-affinity branched-chain amino acid transport system; membrane component #108 livK 300 high-affinity leucine-specific transport system; periplasmic binding protein #109 livJ 213 high-affinity amino acid transport system; periplasmic binding protein #110 rpoH 244 RNA polymerase, sigma(32) factor; regulation of proteins induced at high temperatures #111 ftsY 149 cell division membrane protein #112 yhhU 54 orf, hypothetical protein #113 nikA 110 periplasmic binding protein for nickel #114 dppB 172 dipeptide transport system permease protein 1 #115 dppA 300 dipeptide transport protein #116 xylF 300 xylose binding protein transport system #117 xylG 77 putative ATP-binding protein of xylose transport system #118 pstC 86 high-affinity phosphate-specific transport system, cytoplasmic membrane component #119 pstS 300 high-affinity phosphate-specific transport system; periplasmic phosphate-binding protein #120 rbsD 300 D-ribose high-affinity transport system; membrane-associated protein #121 rbsB 24 D-ribose periplasmic binding protein #122 b3913 146 orf, hypothetical protein #123 yiiP 148 putative transport system permease protein #124 pfkA 180 6-phosphofructokinase I #125 BIME199 56 BIME #126 sbp 164 periplasmic sulfate-binding protein #127 malE_malK 364 malE: periplasmic maltose-binding protein; substrate recognition for transport and chemotaxis, malK: ATP-binding component of transport system for maltose #128 lamB 71 phage lambda receptor protein; maltose high-affinity receptor #129 malM 104 periplasmic protein of mal regulon #130 yjcW 33 putative ATP-binding component of a transport system #131 BIME216 65 BIME #132 yjcX 58 putative LACI-type transcriptional regulator #133 rpiR 300 transcriptional repressor of rpiB expression #134 phnD 24 periplasmic binding protein component of Pn transporter #135 phnC 132 ATP-binding component of phosphonate transport #136 phnB 61 orf, hypothetical protein #137 phnA 300 orf, hypothetical protein #138 ytfQ 300 putative LACI-type transcriptional regulator #139 BIME228 47 BIME #140 ytfR 29 putative ATP-binding component of a transport system #141 fecB 38 citrate-dependent iron transport, periplasmic protein #142 fecA 86 outer membrane receptor; citrate-dependent iron transport, outer membrane receptor #143 fecI 291 probable RNA polymerase sigma factor Motif number 1 CCTCTCCCACAGGGAGAGGGAGAAAACCAA 4 13 0 AGGGAGAGGG 0.988841 -183 CCTCTCCCTGTGGGAGAGGGCCGGGGTGAG 4 24 1 TGGGAGAGGG 0.947639 -172 GGAGAGGGCCGGGGTGAGGGCATCAGCGCG 4 36 1 GGGGTGAGGG 0.988547 -160 GGAGAGGGTTAGGGTGAGGGTGAACGTGCG 4 64 0 AGGGTGAGGG 0.984873 -132 CTCTCCCTTGAGGGAGAGGGTTAGGGTGAG 4 76 0 AGGGAGAGGG 0.988841 -120 CTCTCCCTCAAGGGAGAGGGGACCGATCGA 4 88 1 AGGGAGAGGG 0.988841 -108 TCACCCTGGAAGGGAGAGGGGGCAGAACGG 14 135 0 AGGGAGAGGG 0.988841 -166 TCTCCCTTCCAGGGTGAGGGCTGGGGTGAG 14 148 1 AGGGTGAGGG 0.984873 -153 GGTGAGGGCTGGGGTGAGGGTTAATGTTCG 14 160 1 GGGGTGAGGG 0.988547 -141 GGAGAGGGTTAGGGTGAGGGGAACAGCCAG 14 198 0 AGGGTGAGGG 0.984873 -103 TCGCCCCTTTGGGGAGAGGGTTAGGGTGAG 14 210 0 GGGGAGAGGG 0.991559 -91 TCTCCCCAAAGGGGCGAGGGGACGGATTGT 14 223 1 GGGGCGAGGG 0.981838 -78 TCTCCCCATAGGGGAGAGGGAACTGCCAGT 20 33 0 GGGGAGAGGG 0.991559 -106 TCTCCCCTATGGGGAGAGGATTAGGGTGAG 20 46 1 GGGGAGAGGA 0.816554 -93 GGAGAGGATTAGGGTGAGGGGCGCAAACCC 20 58 1 AGGGTGAGGG 0.984873 -81 AATTTTCTCAGGGGCGAAGGTGTGCCTGCA 45 145 1 GGGGCGAAGG 0.910993 -100 GCCCCCACGCAGGGCGGAGGCGTCACACCT 71 222 1 AGGGCGGAGG 0.686965 -36 GGTTACCCGAAGGGAGCGGGCTTTCTTTCA 77 21 0 AGGGAGCGGG 0.903811 -69 GGTGACGGCGTGGGTGAGGGAAAATGGGAG 105 80 0 TGGGTGAGGG 0.930058 -159 GTTGTTACAAAGGGAGAAGGGC 127 3 0 AGGGAGAAGG 0.943745 -362 AAAAAGCCAGGGGGTGGAGGATTTAAGCCA 127 84 0 GGGGTGGAGG 0.822858 -281 CTTTTTTATGGGGGAGGAGGCGGGAGGATG 127 108 1 GGGGAGGAGG 0.863429 -257 ********** Masking position 6 Map Score: 55.1302 Number of sites scoring better than the average of aligned sites = 113 Number in coding regions = 26 Number in noncoding regions = 87 Number of orfs with sites within 600 bp upstream = 26 Fraction of orfs with sites within 600 bp upstream = 0.00417604 Motif number 2 CGAACCTGATCCGGATAACGCCGGCGAAGGG 1 94 1 CCGGATACGC 0.887053 -70 GCGTGAAATACCGGATGGCGAGTTGCCATCC 5 18 1 CCGGATGCGA 0.773199 -202 CACGACGCATCCCGCTACCGCGAAAACCTTT 12 223 0 CCCGCTACGC 0.933433 -78 GGTTTTCAGGCCCGATGGGGAACGACCATCA 15 78 0 CCCGATGGGA 0.844442 -92 GGCACGCTCACCGGATGCGGCATCAGTGCAT 17 18 1 CCGGATGGGC 0.960824 -283 CAGCGCTACGCCCGAGGTGGCATACAGTCTG 22 67 0 CCCGAGGGGC 0.916086 -137 CAGACATTTCCCGGATGTCGCGTTATGGAGC 35 73 1 CCGGATGCGC 0.974981 -176 TTAACGGAAGCCCGTTGCCGCCCGCGCTCCA 35 98 0 CCCGTTGCGC 0.90025 -151 GGCGTCCGAACGCGCCGCCGCTCATCGTCTA 38 23 1 CGCGCCGCGC 0.815579 -31 TGGCGCTTATCCCGGCATGGCATGAGATCTG 46 191 1 CCCGGCAGGC 0.71354 -67 TCCTTTGTTGCCCGACGTGGCAGCGAAAATG 67 163 0 CCCGACGGGC 0.95431 -33 TTCTTCCATGCCCGGTAACGCTCCAGAAAAC 69 151 0 CCCGGTACGC 0.921615 -129 ACGCATTGCCCGATGCCGCAAAGGCATAA 82 9 1 CCCGATGCGC 0.989958 -157 TTGAGCGGCACGCGCTGCCGCTCATCACAAA 92 30 1 CGCGCTGCGC 0.929271 -67 TCTGCACTTGCCCGGTGACGCCGGGCATTAT 94 12 1 CCCGGTGCGC 0.983148 -46 CGAAATTATTCCCGGGAACGCGTCCCGGGAG 97 20 0 CCCGGGACGC 0.674108 -33 GTTCAACGATCGCGATGCGGCGGTTATAGAT 102 67 0 CGCGATGGGC 0.921365 -32 AATCTGTATACCCGGTGGCGCTGTGCCTCTG 114 35 1 CCCGGTGCGC 0.983148 -138 AGTATTGCTGCCGGATGGCGCTGCACGCAGA 114 62 0 CCGGATGCGC 0.974981 -111 GCCCCCGCTCCGCGCTGGGGCGTAACGC 117 8 0 CGCGCTGGGC 0.892118 -70 TTTTGTAATGCCGGATGCGGCGTAAAACACC 118 31 0 CCGGATGGGC 0.960824 -56 AGAAAAATGCCCCGCTTACGCA 119 2 0 CCCGCTTCGC 0.744327 -299 TTGTTTTACACCCCCTGACGCATGTTTGCAG 122 72 1 CCCCCTGCGC 0.766741 -75 TAAGCCATCTCCTGATGACGCATAGTCAGCC 127 60 0 CCTGATGCGC 0.813145 -305 TAATAACTACCCCGACGAGGACAACCCT 138 283 1 CCCGACGGGA 0.646295 -18 GATTCGTAGGCCGGATAAGGCGCTCGG 139 31 1 CCGGATAGGC 0.831738 -17 ******* *** Masking position 10 Map Score: 32.8619 Number of sites scoring better than the average of aligned sites = 1020 Number in coding regions = 756 Number in noncoding regions = 264 Number of orfs with sites within 600 bp upstream = 125 Fraction of orfs with sites within 600 bp upstream = 0.0200771 Motif number 3 CTTCATGTTTGAGCCGATTTTTTCTCCCGTAAA 16 70 0 GGCCATTTTT 0.730894 -180 CATACAGTCTGTGGCGTTTTTCTGACATAATAG 22 45 0 GGGCTTTTTT 0.951278 -159 TACAATTTGCGTGCCAATTTTTTATCTTTTTGA 37 78 0 GGCCATTTTT 0.730894 -74 CGGCGCTTATGCGCCGTTTTTTTTTCTGTCACA 40 27 1 GGCCTTTTTT 0.908062 -159 AGGCCGCAGAGCGGCCTTTTTAGTTAGATCAGA 50 11 0 GGGCTTTTTG 0.950303 -90 GGCCGCTCTGCGGCCTTTTTTCTTTTCACTGTC 50 28 1 CGCCTTTTTT 0.833233 -73 CCTCCCAGTGGAGGCTTTTTTTGTATGCGCGTT 51 61 1 GGGCTTTTTG 0.950303 -223 TCGGGCTTCACAGGCTTTGTTCGCCTTTGTTTC 54 41 1 CGGCTTGTTG 0.702608 -56 GCACCAAAAGCGGGCATTTTTTGCGCCATCGTT 56 173 1 CGGCTTTTTG 0.906307 -128 TTGCAGTGTAGAGCCATTGTTTGTAAACACAAA 62 38 0 GGCCTTGTTG 0.702608 -50 CCCGCCACCGGCGGGGTTTTTTTCTGCCTGGAA 63 44 1 GGGGTTTTTT 0.746147 -135 TTTTCAAAAACAGCCATTTTTTGTTAGTCGCCG 64 134 0 CGCCTTTTTG 0.830317 -132 CTGCTTGCTGGCGGCTATTTTGTCAGCACTGAA 70 86 0 GGGCATTTTT 0.84299 -56 TATTTTTTCAGCGCCATTTTTATTGATGCGCGG 82 58 1 GGCCTTTTTT 0.908062 -108 CTAAGTTCACCAGGCTATTTTATTTGTCATTTT 89 56 1 CGGCATTTTT 0.730894 -245 CAATACGCCTGTGGCATTGTTCGCTCAAACTTA 95 75 0 GGGCTTGTTG 0.823643 -58 GGATGAGAGTCCGGGGTTTTTGTTTTTTGGGCC 109 36 1 CGGGTTTTTT 0.597891 -178 TGCGTAAGCGGGGCATTTTTCTTCCTGTTATG 119 10 1 GGGCTTTTTT 0.951278 -291 TCTTCATAAGGGGGCGTTTTTGTTTTCATGGTT 120 197 1 GGGCTTTTTT 0.951278 -104 CACATGCTGTGGGGGTTTTTTTTATCCTCAATT 123 55 1 GGGGTTTTTT 0.746147 -94 CCTCCACCCCCTGGCTTTTTTATGGGGGAGGAG 127 94 1 CGGCTTTTTT 0.908062 -271 TGCAAAAATCGTGGCGATTTTATGTGCGCATCT 127 195 1 GGGCATTTTT 0.84299 -170 GTGTATAATTGCGGCCTTTTTCGGCAATCTGCC 137 235 1 GGGCTTTTTG 0.950303 -66 TTTCGGCAATCTGCCGTTTTTTGGCGCTTTTGC 137 253 1 CGCCTTTTTG 0.830317 -48 * *** ***** * Masking position 8 Map Score: 26.6401 Number of sites scoring better than the average of aligned sites = 429 Number in coding regions = 284 Number in noncoding regions = 145 Number of orfs with sites within 600 bp upstream = 132 Fraction of orfs with sites within 600 bp upstream = 0.0212014 Motif number 4 GAAATGGGCACGGAAATCCGTGCCCCAAAAGAG 6 14 0 CGGAAATCGC 0.80622 -37 ATATTTCGGCACGCTCACCGGATGCGGCA 17 7 1 CGGCACGCCC 0.945723 -294 CCCTTTTGTGCGGTCAGCTTTGCGTGGCGTTCG 18 48 0 CGGTCAGCGC 0.896918 -81 AACTTTCTCCCGGCCAGCACTGCTCGCTATATA 23 173 0 CGGCCAGCGC 0.981232 -128 AACCCCGCATCGGTAAGCCATCCGTTGCGTTTA 29 226 1 CGGTAAGCCC 0.73457 -24 ACCAACCACACGGCCCTCATTACGACCCCTGAA 32 156 1 CGGCCCTCAC 0.529263 -93 TCTGCATAAGCGGAAAGCGCAGCAATTTTTGTC 46 218 1 CGGAAAGCGC 0.959878 -40 AGAAGAGAAACGGAAAACAGCGCCTGAAAGCCT 51 31 1 CGGAAAACGC 0.690391 -253 AGACTGGACACGGCCAGCGCGGAGAAACCGGAG 51 139 1 CGGCCAGCGA 0.654186 -145 TAACAACAGGCGGTAAGCAACGCGAAATTCTGC 56 237 1 CGGTAAGCGC 0.937159 -64 TTAAATTAATCGGAAAACAAAGCATTACCTTTT 61 224 0 CGGAAAACGC 0.690391 -77 AAAAGAGTGGCGGGAAGCGTGGCAAAAACGGGC 76 132 0 CGGGAAGCGC 0.9591 -169 GGTGCCAGACCGGCACCCTCAGCGAAGGCA 80 8 0 CGGCACCCGC 0.93121 -87 TTTACCGGTACGGCAATCAGCGCGATCATCACC 88 91 0 CGGCAATCGC 0.939699 -210 ACGGCTCTAACGGCCCGCTCGGCGGTTGGCTCG 88 258 1 CGGCCCGCGC 0.982073 -43 AATATTTGAGCGGCACGCGCTGCCGCTCATCAC 92 25 1 CGGCACGCGC 0.989462 -72 TTACCGCTCCCGGGACGCGTTCCCGGGAATAAT 97 14 1 CGGGACGCCC 0.820135 -39 TGATTTGCAACGGCAAGCAGCACGCTGGCGGCA 100 233 0 CGGCAAGCAC 0.91361 -68 TTCCCTGCTACGGAACCCATTGCAGGGAAAGAG 110 26 0 CGGAACCCGC 0.783275 -219 TGCGTCTGCGCGGCAAGCTGTACTTGCTGCTGC 120 65 1 CGGCAAGCAC 0.91361 -236 GTTAACCTTCTGGCACGCTTTGCTCATCACAAC 126 121 1 TGGCACGCGC 0.772591 -44 TGCGGGAGGGCGGGCCTCCCGGCGGG 135 4 0 CGGGCCTCGC 0.71372 -129 GCTAAAAGCCCGGCAAGCCGGGCGTTAACACA 141 10 0 CGGCAAGCGC 0.988964 -29 ******** ** Masking position 8 Map Score: 25.0382 Number of sites scoring better than the average of aligned sites = 846 Number in coding regions = 777 Number in noncoding regions = 69 Number of orfs with sites within 600 bp upstream = 55 Fraction of orfs with sites within 600 bp upstream = 0.00883392 Motif number 5 GCTTCCCACGGCGCGCCATTACGCTATTGC 12 150 0 GCGCGCCATT 0.467982 -151 ATGTGATGTCCTGCGCCGTTCTGCCCCCTC 14 120 1 CTGCGCCGTT 0.374606 -181 CAATCCGTCCCCTCGCCCCTTTGGGGAGAG 14 222 0 CCTCGCCCCT 0.539836 -79 GAATTTGTCATTACGCCCTTAACCTTATTA 14 263 1 TTACGCCCTT 0.342856 -38 GGGCTGGAATTTCCGCCCCTGGTTCTTGTA 15 12 0 TTCCGCCCCT 0.913325 -158 CGGAGCGGGTTTGCGCCCCTCACCCTAATC 20 64 0 TTGCGCCCCT 0.875955 -75 GCTCGCCGACCACCGCCCCCGTTATTTTGT 26 75 1 CACCGCCCCC 0.599819 -143 AACAATAATTGTCCGCCATTTAAATCAAGC 28 19 1 GTCCGCCATT 0.615897 -282 GCCGTAGAATTACCGCCCTCATTAAGAGTC 29 177 1 TACCGCCCTC 0.579616 -73 GGGTAACGCGCCGCGCCATTAACTATAAAA 34 43 1 CCGCGCCATT 0.770714 -91 GAGTGCTATCATCCGCCCTTATGCTTAGCG 34 93 1 ATCCGCCCTT 0.705779 -41 GAGGCTGCGTATGCGCCCCTCCTGCTACTG 35 190 1 ATGCGCCCCT 0.589002 -59 ACTGACTGGACTCCGCCCCCTTTGCTTCCC 35 216 1 CTCCGCCCCC 0.875979 -33 GCAGGCACACCTTCGCCCCTGAGAAAATTT 45 144 0 CTTCGCCCCT 0.589002 -101 CTGGAAATTACTGCGCCATTCTGACGCAGC 56 141 1 CTGCGCCATT 0.804161 -160 CGGGCATTTTTTGCGCCATCGTTGACATCA 56 183 1 TTGCGCCATC 0.649239 -118 CAACGTGCTTCCCCGCCACCGGCGGGGTTT 63 33 1 CCCCGCCACC 0.710807 -146 CTCAAGCTAACCCCGCCATTATCAACTATG 65 74 1 CCCCGCCATT 0.833773 -70 GGCGCAAACGTCGCGCCCTTACTAAAGCA 66 10 0 TCGCGCCCTT 0.866387 -24 GGCGCGACGTTTGCGCCCTTT 66 23 1 TTGCGCCCTT 0.887907 -11 CAGTCTATTACTGCGCCCTTATTGTATGGC 68 24 1 CTGCGCCCTT 0.906186 -37 GGTGTGACGCCTCCGCCCTGCGTGGGGGCA 71 221 0 CTCCGCCCTG 0.679341 -37 TTGCCACGCTTCCCGCCACTCTTTTGATCC 76 140 1 TCCCGCCACT 0.785725 -161 AGGCAAAATATCCCGCCCCGTTAGACGTAT 78 122 0 TCCCGCCCCG 0.559056 -99 AATATTTTTTCAGCGCCATTTTTATTGATG 82 56 1 CAGCGCCATT 0.465637 -110 GGCGCTACTAATGCGCCACTTTCTTATATG 96 52 1 ATGCGCCACT 0.37858 -153 TAGTGAATTATTCCGCCCTTTGTGCCGTTA 108 54 1 TTCCGCCCTT 0.921997 -247 TCATACTTATTTCCGCCATCTATTTTAATC 113 78 1 TTCCGCCATC 0.734183 -33 ACAAATCAATTCCCGCCCTTATCGGACAGG 114 99 0 TCCCGCCCTT 0.906331 -74 GTGTATAAAATACCGCCATTTGGCCTGACC 124 42 1 TACCGCCATT 0.516045 -139 GGCGGATTTCTTCCGCCTTTTTAATCCCTC 126 41 1 TTCCGCCTTT 0.330901 -124 TCAGAGGGGCTTTCGCCCCTTTCAGATAAT 129 23 0 TTTCGCCCCT 0.540277 -82 AAAAAGGTAATTCCGCCATCGCGGAGTTAC 132 12 1 TTCCGCCATC 0.734183 -47 CCGCCGGGAGGCCCGCCCTCCCGCACTGTC 135 12 1 GCCCGCCCTC 0.629251 -121 ********** Masking position 5 Map Score: 19.8414 Number of sites scoring better than the average of aligned sites = 589 Number in coding regions = 519 Number in noncoding regions = 70 Number of orfs with sites within 600 bp upstream = 75 Fraction of orfs with sites within 600 bp upstream = 0.0120463 Motif number 6 ATAAAAAAAACCAGCAGGTATAATCTGCTG 3 36 1 CCAGCAGGTA 0.542873 -174 TGTAAAATCACCCGCCAGCAGATTATACCT 3 51 0 CCCGCCAGCA 0.872424 -159 TGGCAACTCGCCATCCGGTATTTCACGCTT 5 16 0 CCATCCGGTA 0.742867 -204 TGGCGAGTTGCCATCCGGTAAAATAACATC 5 33 1 CCATCCGGTA 0.742867 -187 CGCTTGCGAACCCGCCAGCGTTTCGAATAT 5 135 1 CCCGCCAGCG 0.841523 -85 TGGGGAACGACCATCAGGCGTATAGTCTGT 15 64 0 CCATCAGGCG 0.803019 -106 CACTGATGCCGCATCCGGTGAGCGTGCCGA 17 16 0 GCATCCGGTG 0.556878 -285 AAAACCCCCCGGCGAATGTACGCA 25 17 0 CCCCCCGGCG 0.804836 -14 CGGCGCGTTACCCTCAGGCAGGATAATGCG 34 26 0 CCCTCAGGCA 0.907199 -108 GAAGCCCGTTGCCGCCCGCGCTCCATAACG 35 93 0 GCCGCCCGCG 0.775073 -156 AGAAAAAAACCCCGCCGGTGGCGGGGAAGC 63 39 0 CCCGCCGGTG 0.809816 -140 TGACAAAATAGCCGCCAGCAAGCAGTCATT 70 94 1 GCCGCCAGCA 0.792999 -48 TATGTGCGCCGCCTCACGCACAATAATCAG 71 168 1 GCCTCACGCA 0.637094 -90 AATAACTTTGCCCCCACGCAGGGCGGAGGC 71 213 1 CCCCCACGCA 0.40707 -45 GATGATCATTCCATCAGGTACAGCTTCCCA 78 19 0 CCATCAGGTA 0.53811 -202 ACATAACCCTCAAGTGAAAATGGCTT 79 250 0 CCCTCAAGTG 0.317941 -16 CACACTGGCTGCCGCCAGCGTGCTGCTTGC 100 224 1 GCCGCCAGCG 0.748408 -77 TTTCTGAACGGCATCAAGCGTCGCGCCAGC 100 272 0 GCATCAAGCG 0.387248 -29 TAAGCGCAGCGCATCAGGCAATTTTACATT 106 61 0 GCATCAGGCA 0.74626 -66 CCTTTCTAAACCCGCCCGCATTTTACGGGC 107 21 0 CCCGCCCGCA 0.887914 -27 AATCAATTTCCCCTCCGGCAAAACGCCAAT 109 77 1 CCCTCCGGCA 0.960384 -137 GCGTGCAGCGCCATCCGGCAGCAATACTTC 114 65 1 CCATCCGGCA 0.928669 -108 GTTTTACGCCGCATCCGGCATTACAAAATG 118 34 1 GCATCCGGCA 0.87942 -53 AATGCATTAAGCAGCAGGCAAATTGAGGAT 123 78 0 GCAGCAGGCA 0.749874 -71 AAGACACTCACCATCCAGCAACATCTATCA 133 122 1 CCATCCAGCA 0.782742 -179 CCCGCCGGGAGGCCCGCCCT 135 1 1 CCCGCCGGGA 0.592915 -132 GGGAGGCCCGCCCTCCCGCACTGTCATCGA 135 17 1 CCCTCCCGCA 0.885991 -116 CTACGAATCGGCATCAGGCATAGCAACCC 139 10 0 GCATCAGGCA 0.74626 -38 ********** Masking position 5 Map Score: 21.3039 Number of sites scoring better than the average of aligned sites = 2278 Number in coding regions = 1896 Number in noncoding regions = 382 Number of orfs with sites within 600 bp upstream = 176 Fraction of orfs with sites within 600 bp upstream = 0.0282686 Motif number 7 GGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGC 4 172 1 GCCTGATGGA 0.841897 -24 GCGGAGCCAGGCCTGACATTTGCTGGTAATCCAGACATT 35 42 1 GCCTGCTGTA 0.847787 -207 GCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACA 45 158 1 GCCTGACGCA 0.626649 -87 AAAATAAAAAGCCTGTCTCATCAGGTGTAATTGTCGCAG 51 98 1 GCCTGCTGGA 0.916126 -186 AAGTAAAATAGCCTGATGGGATAGGCTCTAAGTCCAACG 51 221 1 GCCTGTAGTT 0.543452 -63 GTTGCTTACCGCCTGTTGTTAAGTGATTTGATCGATGGT 56 219 0 GCCTGTAGTT 0.543452 -82 ATGATTTGTTGCCTGCCGTCCTTTGTTATACCGTCTCTG 57 81 1 GCCTGCCGTT 0.907753 -38 CATAAGATTAGCCTGGAAATCCTTGTTGTCTTTGGTACC 61 13 0 GCCTGACGTT 0.82751 -288 CCGGACTATAGCCTGGATCAAGACGCGGAAACATCATTT 73 102 0 GCCTGAAGGA 0.711414 -79 GCTGCCTGTCCTGTCGTGTGTGGTGAATTACC 77 68 0 GCCTGCTGGG 0.672875 -22 GTTGGCTACAGCCTGAAATGTTCCGAGCATTATTCTCG 85 10 0 GCCTGATGGA 0.841897 -73 CGTAGTTACAGCCTGAAAGATGACGAGTACAAGGCATAG 85 48 1 GCCTGATGGA 0.841897 -35 CATTCTGCTGGCCTGGCTGGTGACGCGCTTTAACTTCCC 88 136 1 GCCTGCTGGT 0.92297 -165 AAATAAAATAGCCTGGTGAACTTAGTTCAAGACGAAATC 89 42 0 GCCTGTCGTA 0.790576 -259 CAACAATTACGCCTGTTGAACCAAGTTCTTATTCCCTTT 89 169 1 GCCTGTCGTT 0.805491 -132 CGCCAGCAGCGCCTGATTTGCAACGGCAAGCAGCACGCT 100 240 0 GCCTGTCGCA 0.591643 -61 CACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATT 106 68 0 GCCTGTCGGA 0.880994 -59 CACTGTTTTTGCCTGTCTGATTAAGGGGTTAGCGCAGTA 108 193 0 GCCTGCTGGT 0.92297 -108 TCACATCACCGCCTGCAAGTATGTGTTATCTGGCGGATT 111 23 0 GCCTGAAGTT 0.579654 -127 GGTTGTCGCTGCCTGACCTTTTTTGTTTTTTGCCCGGTC 115 226 0 GCCTGCTGTT 0.859353 -75 GCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTG 129 65 1 GCCTGCCGGT 0.950733 -40 CCAGCTAAAAGCCCGGCAAGCCGGGCGTTAACACA 141 7 0 GCCCGCCGGT 0.637448 -32 ***** * * * * * Masking position 5 Map Score: 16.6682 Number of sites scoring better than the average of aligned sites = 664 Number in coding regions = 552 Number in noncoding regions = 112 Number of orfs with sites within 600 bp upstream = 77 Fraction of orfs with sites within 600 bp upstream = 0.0123675 Motif number 8 GTGAACGTGCGCGCTGATGCCCTCACCCCG 4 45 0 GCGCTGATGC 0.927544 -151 ACAGAAAATCGGGCTTTTGCGCCTGAATAT 4 162 1 GGGCTTTTGC 0.790462 -34 ACATCACATTGCGCTTATGCGAATCCATCA 14 99 0 GCGCTTATGC 0.961425 -202 AAGAATTTCCCCGCTTATTCGCACCTTCCC 16 128 1 CCGCTTATTC 0.769256 -122 GCTATCATCCGCCCTTATGCTTAGCGCATT 34 97 1 GCCCTTATGC 0.633079 -37 ACCATGAGCGGCGCTTATGCGCCGTTTTTT 40 19 1 GCGCTTATGC 0.961425 -167 CAGCATTCTGGCGCTTATCCCGGCATGGCA 46 183 1 GCGCTTATCC 0.867062 -75 GCTGCGCTTTCCGCTTATGCAGATCTCATG 46 211 0 CCGCTTATGC 0.952453 -47 TGGCAAAAACGGGCTTTTGCTCACATTTCA 76 116 0 GGGCTTTTGC 0.790462 -185 CTCCGCTGTTGCCCTGTTTCAG 79 3 1 CCGCTGTTGC 0.840612 -263 GGTATCCGCTGATTCGTTACGGTGA 83 55 0 CCGCTGATTC 0.631312 -15 ATTCAGCAAGGGGCTGATGCCGGTTTTACA 88 19 1 GGGCTGATGC 0.790794 -282 TTATTAACAACGGCTTATTCTAATTATTTT 92 58 0 CGGCTTATTC 0.49607 -39 CGAGTTGCCCCCGCTTTTCCATTAA 95 6 0 CCGCTTTTCC 0.728783 -127 CTATATTTTCCCGCTTATCCGTGCCCCATC 105 51 1 CCGCTTATCC 0.839799 -188 GAAAAATGCCCCGCTTACGCA 119 2 0 CCGCTTACGC 0.692013 -299 CGGGTTTAGCGCGCTATTGCCTGGCTACCG 129 57 1 GCGCTATTGC 0.557015 -48 CCGTTTTTTGGCGCTTTTGCCCTGCTGACT 137 266 1 GCGCTTTTGC 0.927409 -35 ********** Masking position 5 Map Score: 13.9249 Number of sites scoring better than the average of aligned sites = 497 Number in coding regions = 459 Number in noncoding regions = 38 Number of orfs with sites within 600 bp upstream = 38 Fraction of orfs with sites within 600 bp upstream = 0.00610344 Motif number 9 GCTTTTTCTCCGCAATATTCAGG 4 183 0 CTTTTTCCGC 0.625268 -13 TTTATTCCTGCATTTTTGCCACGAATTGCAAC 12 276 0 CTTTTGCCAC 0.937537 -25 ATATCAGGGACTTGTTCGCACCTTCCTTAGGT 17 273 0 CTGTTGCACC 0.793994 -28 TCGTGCATCACGTTTTTGCCGCATCTCGAAAA 21 191 1 CTTTTGCCGC 0.967202 -110 TTTTACTTGCCATTTTGGTCCCGGGCTGTGCT 51 197 0 CTTTTGTCCC 0.66556 -87 GAATGTCATTCGTTTTTGCCCTACACAAAACG 61 258 1 CTTTTGCCCT 0.790587 -43 GTTTTTGCACCATTTTCGCTGCCACGTCGGGC 67 153 1 CTTTTGCTGC 0.679067 -43 ATAATTTTACCTTGTTGGCCATACAATAAGGG 68 39 0 CTGTTGCCAT 0.493372 -22 AGCAAAAGCCCGTTTTTGCCACGCTTCCCGCC 76 125 1 CTTTTGCCAC 0.937537 -176 CGCATAATGCCATTTTTGCCCCCAACAGACCA 84 83 0 CTTTTGCCCC 0.972354 -73 TTTTATTTGTCATTTTGGCCCCGGGCAGTGCT 89 73 1 CTTTTGCCCC 0.972354 -228 ATTTGTTTTACTTTTTAGCCGCATAAAGTCAA 99 83 0 CTTTTGCCGC 0.967202 -127 GCGCATGTTTCATTTTCGCACCATTGCGGGGC 100 14 1 CTTTTGCACC 0.864433 -287 CCCCCTGACGCATGTTTGCAGCCTGAATCGTA 122 82 1 CTGTTGCAGC 0.763681 -65 ATACTCGGCACTTGTTTGCCACATATTTTTAA 138 13 0 CTGTTGCCAC 0.90072 -288 * **** ***** Masking position 6 Map Score: 9.19279 Number of sites scoring better than the average of aligned sites = 193 Number in coding regions = 166 Number in noncoding regions = 27 Number of orfs with sites within 600 bp upstream = 28 Fraction of orfs with sites within 600 bp upstream = 0.00449727 Motif number 10 TTTTTTATTCTCGCCGCGCTAAAAAGGGAAC 3 13 0 TCCCGCGCTA 0.815564 -197 CATTTGGTACTTTCCGGGCAACCGCCAGACG 30 25 1 TTCCGGGCAA 0.711178 -276 TCTCACGATCGTACCGCTCTGCTCCTCGCTA 32 48 1 GTCCGCTCTG 0.833373 -201 GCAGGATAATGCGCCGCGCATCCGACTA 34 8 0 GCCCGCGCAT 0.897689 -126 GTCAGGCCTGGCTCCGCTCAGGCCGATGAAA 35 28 0 GCCCGCTCAG 0.889565 -221 CGGCGCATAAGCGCCGCTCATGGTGAATTCT 40 12 0 GCCCGCTCAT 0.720096 -174 CGCTCCGGTTTCTCCGCGCTGGCCGTGTCCA 51 143 0 TCCCGCGCTG 0.944622 -141 TGCCATTTTGGTCCCGGGCTGTGCTCGAAAT 51 191 0 GTCCGGGCTG 0.925841 -93 TTCTGGAGCGTTACCGGGCATGGAAGAACGA 69 154 1 TTCCGGGCAT 0.752236 -126 TTCGCTGAGGGTGCCGGTCTGGCACCCTGAC 80 15 1 GTCCGGTCTG 0.785434 -80 AGGGATTTCCTTCCCGCGCATCAATAAAAAT 82 73 0 TTCCGCGCAT 0.805763 -93 TCGCCGGTGGTTGCCGGTCTGGTGTATTTGC 88 221 1 TTCCGGTCTG 0.715667 -80 TGTCATTTTGGCCCCGGGCAGTGCTCGAAAT 89 80 1 GCCCGGGCAG 0.952622 -221 CGCTCCGGTTTCTCCGCGCTGTTCGTGTCCA 89 129 1 TCCCGCGCTG 0.944622 -172 GCGGCAGCGCGTGCCGCTCAAATATTACAGT 92 20 0 GTCCGCTCAA 0.58946 -77 ATGCCCGGCGTCACCGGGCAAGTGCAGAG 94 9 0 TCCCGGGCAA 0.781847 -49 TCACGCCCCCGCTCCGCGCTGGGGCGTAACG 117 12 0 GCCCGCGCTG 0.961252 -66 CAAGTACAGCTTGCCGCGCAGACGCAAATAC 120 60 0 TTCCGCGCAG 0.928506 -241 AACGCCCGGCTTGCCGGGCTTTTAGCTGGAA 141 17 1 TTCCGGGCTT 0.732725 -22 ** ******** Masking position 6 Map Score: 14.9996 Number of sites scoring better than the average of aligned sites = 1112 Number in coding regions = 1056 Number in noncoding regions = 56 Number of orfs with sites within 600 bp upstream = 59 Fraction of orfs with sites within 600 bp upstream = 0.00947639 Motif number 11 CAGCTTTGCGTGGCGTTCGTTTTCCGTCACAAT 18 34 0 TGGCGTTTTT 0.935932 -95 AAAGTTATTCTTGCGATGCTTTTATATAGCGAG 23 151 1 TTGCGATTTT 0.604056 -150 TAGCGTTTAATTTAATTCCTCTT 45 1 1 TAGCGTTTTT 0.693248 -244 ATCTCGCACGTTGCGTTTCATTTTGATTCCGTC 47 248 1 TTGCGTTTTT 0.934794 -53 TGAAGTGTCATGGCGTTGATTTTACGGTGACTC 50 64 0 TGGCGTTTTT 0.935932 -37 TGCTTGCGTTACCTTTTGGTACTCTT 52 107 0 TTGCGTTTTT 0.934794 -16 CTGCATAACATTGCGTTTTTTATTCTTTTTATT 56 65 0 TTGCGTTTAT 0.729012 -236 AAAAAGTCGATGGCGTTGAATATTTTTTCAGCG 82 38 1 TGGCGTTTAT 0.732714 -128 TTTCTAAGCATGGCGCTCAATTTAACCTTGAAC 99 162 0 TGGCGCTTTT 0.697346 -48 ACCCTTCGTCTTGCGTTGATTTTCTAAGCATGG 99 182 0 TTGCGTTTTT 0.934794 -28 TGATGTTGTGTTGCTTTGTTTTTATGTGTTAAC 108 259 0 TTGCTTTTTT 0.624774 -42 AGGAGGCGTCTGGCGTTAGATTTCGACCTGAGT 120 163 0 TGGCGTTTTT 0.935932 -138 TCCTGAGTCATTGCTTTTCTTTTTTCACATCAC 128 43 0 TTGCTTTTTT 0.624774 -29 TATTTTCTTTTTGCGTTTCCTTTCAAATGAAAA 137 154 1 TTGCGTTTTT 0.934794 -147 ******* *** Masking position 7 Map Score: 8.31015 Number of sites scoring better than the average of aligned sites = 68 Number in coding regions = 50 Number in noncoding regions = 18 Number of orfs with sites within 600 bp upstream = 25 Fraction of orfs with sites within 600 bp upstream = 0.00401542 Motif number 12 TGCCCCCTCTCCCTTCCAGGGTGAGGGCTGGG 14 141 1 CCTCCAGGGT 0.92933 -160 TGTACTGATGCTGTTTCAGGGTTTGCCTTGTA 17 103 0 CTTTCAGGGT 0.832119 -198 GGGCGCAAACCCGCTCCGGGGCCATTAATTAC 20 76 1 CCTCCGGGGC 0.903687 -63 TGTAAATAATCAAATTCAGGGTAATTAATGGC 20 96 0 CATTCAGGGT 0.726519 -43 CAGAATGGTGCATCTTCAGGGTATTGCCCTAT 21 156 1 CATTCAGGGT 0.726519 -145 GGATGGCTTACCGATGCGGGGTTTGTGGTTAA 29 217 0 CCTGCGGGGT 0.968498 -33 AGTCTCCGAGCCTGTGCAGGGTCCCAATCCGG 30 226 1 CCTGCAGGGT 0.967362 -75 TACCCCTTGCGGGGTTGTTTCATCG 35 4 1 CCTGCGGGGT 0.968488 -245 TCCGGTTTTTCTTATGCAGGGTAGTGCTTGAG 69 252 0 CTTGCAGGGT 0.874955 -28 TAACTTTGCCCCCACGCAGGGCGGAGGCGTCA 71 215 1 CCCGCAGGGC 0.721054 -43 CAGGTTTTACCCCGATCGGGGTATGCATCTTT 76 175 1 CCATCGGGGT 0.65077 -126 CGCTGTTGCCCTGTTTCAGGGCAATTTTGCAA 79 14 1 CTTTCAGGGC 0.773221 -252 GCCCTGTCATCCTGTTCGGGGCGCATTCTAAC 82 125 0 CCTTCGGGGC 0.937425 -41 CATTTTCGCACCATTGCGGGGCGCTGTTTTTA 100 24 1 CCTGCGGGGC 0.954849 -277 ACCCCGGACTCTCATCCAGGGTTCTCTGCTTA 109 21 0 CTTCCAGGGT 0.756361 -193 GCTACGGAACCCATTGCAGGGAAAGAGTATAA 110 21 0 CCTGCAGGGA 0.759281 -224 CTTCTGTCATCGGTTTCAGGGTAAAGGAATCT 125 28 0 CGTTCAGGGT 0.690677 -29 AGGGTTGTCCTCGTCGGGGTAGTTATTATT 138 281 0 CCGTCGGGGT 0.734173 -20 ** ******** Masking position 7 Map Score: 12.3081 Number of sites scoring better than the average of aligned sites = 152 Number in coding regions = 127 Number in noncoding regions = 25 Number of orfs with sites within 600 bp upstream = 23 Fraction of orfs with sites within 600 bp upstream = 0.00369419 Motif number 13 AAATCAGTAAGTTGGCAGCATCACCGAGAA 9 251 0 GTTGGCAGCA 0.878283 -50 AGCGGGAATATTTATCAGCATTACCTTAAT 29 93 1 TTTATCAGCA 0.75593 -157 TAAAGCGCAATTTGTCAGCAACGTGCTTCC 63 15 1 TTTGTCAGCA 0.952615 -164 TGGCGGCTATTTTGTCAGCACTGAATACAG 70 81 0 TTTGTCAGCA 0.952615 -61 AAAAAGTGCCTTTGTCAGCATAAAATAACG 108 79 0 TTTGTCAGCA 0.952615 -222 CTACCCGTGCTTTAGCAGCATACTCTGCTA 109 173 0 TTTAGCAGCA 0.743358 -41 CAAAGCGCACTTTGTCAACAATCTGTATAC 114 16 1 TTTGTCAACA 0.613009 -157 CGGGAATTGATTTGTGAGCAATACAGACAC 114 114 1 TTTGTGAGCA 0.827312 -59 ACAGAAAGATTTTGGGAGCAA 122 136 1 TTTGGGAGCA 0.81753 -11 CAAAGCGCACTTTGTCAGCAATATGAGGCG 126 15 1 TTTGTCAGCA 0.952615 -150 AAATCAGTAAGTTGGCAGCATTACCGAAAT 143 41 1 GTTGGCAGCA 0.878283 -251 ********** Masking position 7 Map Score: 6.50964 Number of sites scoring better than the average of aligned sites = 97 Number in coding regions = 74 Number in noncoding regions = 23 Number of orfs with sites within 600 bp upstream = 23 Fraction of orfs with sites within 600 bp upstream = 0.00369419 Motif number 14 CCGATATTTTTTCTTATCTACCTCACAAAGGT 19 69 1 TTCTTTCTCC 0.674583 -98 AGCATTTCCTTTTTTCTATCCACGGGACGA 21 281 0 CTTTTTCTTC 0.901584 -20 ATTTGGAATTTTCTTGTCTCTCCGACAGACTG 28 224 1 TTCTTTCTTC 0.698926 -77 ATGCGCCGTTTTTTTTTCTGTCACACCTTATT 40 35 1 TTTTTTCTTC 0.864547 -151 GGCCTTTTTTCTTTTCACTGTCGAAGAGTCAC 50 39 1 CTTTTACTTC 0.580224 -62 ACCGGCGGGGTTTTTTTCTGCCTGGAATTTAC 63 50 1 TTTTTTCTCC 0.850735 -129 GCGATTTCCTTTTATCTTTCGACACGTAAA 64 9 1 CTTTTTCTTC 0.901584 -257 CCGAAATACTCTTTTCTCTGCCCCTTATTCCC 64 105 0 CTTTTTCTCC 0.891073 -161 CTGAGCATTCTTTTTCTCTCTCCATCATGCTT 67 108 1 TTTTTTCTTC 0.864547 -88 GAATTACCGCCTCTTGTCTCCCTCCGGTTACC 77 44 0 CTCTTTCTCC 0.748449 -46 GAAATAGTCACTTTTTTCTACCCTAACATACT 93 231 0 CTTTTTCTCC 0.891073 -70 CGTTTATCTCTCTTGTTGTACC 105 227 0 CGTTTTCTTC 0.681331 -12 TCAAAGGAGTCTTTTGACTCCCTATCAATCAA 106 18 0 CTTTTACTCC 0.552429 -109 CACTTTTTTCTGTTTATCTATCAATAAATTCA 108 101 1 TGTTTTCTTC 0.598333 -200 CAATTACAGATTTTTATCTTTCGATTACGATT 116 186 0 TTTTTTCTTC 0.864547 -115 CTTCGGCTACTTTTTCTCTGTCACAGAATGAA 119 87 1 TTTTTTCTTC 0.864547 -214 TCACATGATATTTTTATCTTTCTGACGTTTTA 137 60 0 TTTTTTCTTC 0.864547 -241 ***** *** ** Masking position 5 Map Score: 10.8086 Number of sites scoring better than the average of aligned sites = 105 Number in coding regions = 70 Number in noncoding regions = 35 Number of orfs with sites within 600 bp upstream = 41 Fraction of orfs with sites within 600 bp upstream = 0.00658529 Motif number 15 CCAGATTGGTGCCCCAGAATGGTGCATCTTC 21 142 1 GCCCAGAATG 0.926705 -159 TCAGAAAAACGCCACAGACTGTATGCCACCT 22 53 1 GCCCAGACTG 0.799777 -151 GCCGGGATAAGCGCCAGAATGCTGGCTTAAA 46 176 0 GCGCAGAATG 0.952271 -82 ACGGAAAACAGCGCCTGAAAGCCTCCCAGTG 51 40 1 GCGCTGAAAG 0.864449 -244 ACATCACGGTGCGTCTGAAAGGTT 55 4 0 GCGCTGAAAG 0.864449 -297 GGTGCGCGCTGCGTCAGAATGGCGCAGTAAT 56 147 0 GCGCAGAATG 0.952271 -154 TTACTTTTTAGCCGCATAAAGTCAAAATTAA 99 77 0 GCCCATAAAG 0.71457 -133 TAAGAGGATGGCCACAGACAGGTAAAAGACG 100 126 1 GCCCAGACAG 0.862091 -175 AGATAGTAAGGTGTCAGAAAGATGACAAGGC 105 110 0 GTGCAGAAAG 0.798003 -129 CTTTTTCTCTGTCACAGAATGAAAATTTTTC 119 96 1 GTCCAGAATG 0.615341 -205 AACGACTCATGCGACATAAAGAAGGAGGT 120 9 0 GCGCATAAAG 0.798004 -292 TCGTTGAATCGCGACAGAAAGATTTTGGGAG 122 123 1 GCGCAGAAAG 0.968967 -24 TACGTTTAAAACGTCAGAAAGATAAAAATAT 137 54 1 ACGCAGAAAG 0.672838 -247 *** ******* Masking position 8 Map Score: 6.3362 Number of sites scoring better than the average of aligned sites = 335 Number in coding regions = 314 Number in noncoding regions = 21 Number of orfs with sites within 600 bp upstream = 24 Fraction of orfs with sites within 600 bp upstream = 0.0038548