AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00052_hinf_reg_300.orf -o00052_hinf_300.ace -a/home/amcguire/genomes/ORF_hinf.txt -z/home/amcguire/genomes/hinf.fna -g0.38 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.38 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 HI0351 172 UDP-glucose 4-epimerase (galE) #2 HI0352 300 conserved hypothetical protein #3 HI0448 71 PTS system, fructose-specific IIA/FPr component (fruB) #4 HI0449 86 H. influenzae predicted coding region HI0449 #5 HI0451 71 conserved hypothetical protein #6 HI0452 50 conserved hypothetical protein #7 HI0453 26 conserved hypothetical protein #8 HI0454 54 conserved hypothetical protein #9 HI0457 69 conserved hypothetical protein #10 HI0458 70 stationary phase survival protein SurA, putative #11 HI0459 131 pyrimidine operon regulatory protein (pyrR) #12 HI0812 21 glucosephosphate uridylyltransferase (galU) #13 HI0813 77 carbon storage regulator (csrA) #14 HI0814 187 alanyl-tRNA synthetase (alaS) #15 HI0815 101 universal stress protein A (uspA) #16 HI0817 170 conserved hypothetical protein #17 HI0819 37 galactokinase (galK) #18 HI0820 207 galactose-1-phosphate uridylyltransferase (galT) #19 HI0982 95 6-phosphofructokinase (pfkA) #20 HI0985 300 DNA processing chain A (dprA) #21 HI1711 59 PTS system, glucose-specific IIA component (crr) #22 HI1712 79 phosphoenolpyruvate-protein phosphotransferase (ptsI) #23 HI1713 158 phosphocarrier protein HPr (ptsH) #24 HI1714 70 conserved hypothetical protein Motif number 1 TTTTAGTCTCAATAATTAACAAGGAAATCATT 1 151 1 AATAATTAAA 0.682519 -22 AATCAATCAATCAATCAATCAAT 2 2 1 ATCAATCAAA 0.990667 -299 CAATCAATCAATCAATCAATCAATCAATCAAT 2 14 1 ATCAATCAAA 0.990667 -287 CAATCAATCAATCAATCAATCAATCAATCAAT 2 26 1 ATCAATCAAA 0.990667 -275 CAATCAATCAATCAATCAATCAATCAATCAAT 2 38 1 ATCAATCAAA 0.990667 -263 CAATCAATCAATCAATCAATCAATCAATCAAT 2 50 1 ATCAATCAAA 0.990667 -251 CAATCAATCAATCAATCAATCAATCAATCAAT 2 62 1 ATCAATCAAA 0.990667 -239 CAATCAATCAATCAATCAATCAATCAATCAAT 2 74 1 ATCAATCAAA 0.990667 -227 CAATCAATCAATCAATCAATCAATCAATCAAT 2 94 1 ATCAATCAAA 0.990667 -207 CAATCAATCAATCAATCAATCAAAGTCTGTCA 2 106 1 ATCAATCAAA 0.990667 -195 CAAGTTTAAAATCAATTGACTATAGTTTATTA 2 156 1 ATCAATTGAA 0.744171 -145 AAAATTGTAGAACAATTAAAAAATACTTTTTT 2 260 0 AACAATTAAA 0.90937 -41 TCTAAAGGGGATTAAGCAAGGAAGCCTGTAAG 4 28 0 ATTAAGCAAA 0.695745 -59 TAGATATCCTATCAATCAAGGAACGGTTGGCA 13 30 0 ATCAATCAAA 0.990667 -48 GTTATTTCAGATTATTCAAAAAACAATTTCTT 14 16 0 ATTATTCAAA 0.752166 -172 AACCGAACCAATCAGTTAAGGAGTCGATT 15 83 1 ATCAGTTAAA 0.764426 -19 ATAAGATTACATCATTCAAAGAATCTGCTCTA 19 39 0 ATCATTCAAA 0.93406 -57 TACCTTCCGAAACAATTAACAAAGTAATAAAT 22 55 0 AACAATTAAA 0.90937 -25 TTCAAAGCAAAATAATCAAGAATAAACACTAA 23 74 0 AATAATCAAA 0.887487 -85 TCGACTAATCAATAATTAAAAATATAAAACCA 23 128 0 AATAATTAAA 0.682519 -31 ********* * Masking position 4 Map Score: 46.7922 Number of sites scoring better than the average of aligned sites = 145 Number in coding regions = 91 Number in noncoding regions = 54 Number of orfs with sites within 600 bp upstream = 12 Fraction of orfs with sites within 600 bp upstream = 0.0019274 Motif number 2 TTGATTGATTGATTGATTGATT 2 2 0 GATTGATGAT 0.997427 -299 TTGATTGATTGATTGATTGATTGATTGATTG 2 18 0 GATTGATGAT 0.997427 -283 TTGATTGATTGATTGATTGATTGATTGATTG 2 30 0 GATTGATGAT 0.997427 -271 TTGATTGATTGATTGATTGATTGATTGATTG 2 42 0 GATTGATGAT 0.997427 -259 TTGATTGATTGATTGATTGATTGATTGATTG 2 54 0 GATTGATGAT 0.997427 -247 TTGATTGATTGATTGATTGATTGATTGATTG 2 70 0 GATTGATGAT 0.997427 -231 TTGATTGATTGATTGATTGATTGATTGATTG 2 82 0 GATTGATGAT 0.997427 -219 TTGATTGATTGATTGATTGATTGATTGATTG 2 94 0 GATTGATGAT 0.997427 -207 GACAGACTTTGATTGATTGATTGATTGATTG 2 106 0 GATTGATGAT 0.997427 -195 AAATGAACCTGATTTATAGATCTTGTAATGA 16 33 0 GATTTATGAT 0.983534 -138 CAAAATATAAGATTTATAGATTATAACAAGG 18 19 0 GATTTATGAT 0.983534 -189 ******* *** Masking position 6 Map Score: 45.1781 Number of sites scoring better than the average of aligned sites = 74 Number in coding regions = 28 Number in noncoding regions = 46 Number of orfs with sites within 600 bp upstream = 4 Fraction of orfs with sites within 600 bp upstream = 0.000642467 Motif number 3 GATTTTCAATAAAATAAAAAACCTGTTGCTA 1 87 0 AAATAAAAAA 0.975308 -86 TTAATTATTGAGACTAAAAAATTATATCACT 1 139 0 AACTAAAAAA 0.737405 -34 AATGATCTTCAAAATAAAATTGATTGCAACG 2 209 0 AAATAAAATT 0.543302 -92 TCTTGGCAAGAAAATAAAAAAAGTATTTTTT 2 244 1 AAATAAAAAA 0.975308 -57 AAATTGTAGAACAATTAAAAAATACTTTTTT 2 260 0 AAATTAAAAA 0.698733 -41 ATGTTATAAAACCATAAAAAATTTGAGGTTA 5 48 1 ACATAAAAAA 0.917408 -24 TACTCAAAAATATAAAAGAAAACGACC 6 34 0 AAATATAAAA 0.875046 -17 AGCCTTAGGCATAAGGAAAAATAATT 8 39 1 AAAGGAAAAA 0.891928 -16 TAAGAAAGAGAAAATAAAAAACAACAAAAGG 9 43 0 AAATAAAAAA 0.975308 -27 AGTATAACGAACAAGAAAAATGGTGCAAATG 11 43 1 AAAGAAAAAT 0.881781 -89 CTTGTTACCCATAATAAAAATAAAAACTAAG 14 156 0 AAATAAAAAT 0.931269 -32 AACATTTTGAGCAATAAAAAACTGTGTACTA 15 33 0 GAATAAAAAA 0.759308 -69 GCCATTATTTATAATAAAAATGTCATTACAA 16 11 1 AAATAAAAAT 0.931269 -160 TAAACCTTTGTAAATAAAAAAGCCATCGCTT 16 118 0 TAATAAAAAA 0.843214 -53 ATAGATTATAACAAGGAAAAAGTT 18 4 0 AAAGGAAAAA 0.891928 -204 TTATATTTTGATCATAAATAATTTACGATAA 18 40 1 ACATAAATAA 0.493735 -168 TATGAACTAAATCATAAAAAATTTTGCTTAT 18 95 1 ACATAAAAAA 0.917408 -113 TTGTCACAAAATAAGAAAATAAGCAAAATTT 18 113 0 AAAGAAAATA 0.656253 -95 AGGTTTATTTTTAATATAAAATGCCAAAAAA 20 36 0 TAATATAAAA 0.488099 -265 AAAAAATCCAATAAGAAAAATTTGTTGATTA 20 138 0 AAAGAAAAAT 0.881781 -163 TCTTATTTTGAAAATGTAAAAAATCCAATAA 20 155 0 AAATGTAAAA 0.726627 -146 CATTTTCAAAATAAGAAAAATTTTGCAATTT 20 170 1 AAAGAAAAAT 0.881781 -131 TTCTTTTTAATGAATAAAAAATTGCAAAATT 20 188 0 TAATAAAAAA 0.843214 -113 TTTTCAAATAAAAAGGAAAAAAT 20 288 1 AAAGGAAAAA 0.891928 -13 GAGATTGTGAATAATAAATAAACTATTTAGC 23 16 1 AAATAAATAA 0.776185 -143 CCTGAATTAAATCATAAAAATAAGCTAAATA 23 39 0 ACATAAAAAT 0.792112 -120 TCAATAATTAAAAATATAAAACCAGAAAATT 23 121 0 AAATATAAAA 0.875046 -38 TGTTTTTGGTAAAATGAAAAAAATTTTTGCA 24 27 0 AAATGAAAAA 0.937469 -44 * ********* Masking position 8 Map Score: 38.1436 Number of sites scoring better than the average of aligned sites = 722 Number in coding regions = 427 Number in noncoding regions = 295 Number of orfs with sites within 600 bp upstream = 222 Fraction of orfs with sites within 600 bp upstream = 0.0356569 Motif number 4 AATAATGATCTTCAAAATAAAATTGATTGC 2 213 0 TTCAAAATAA 0.899473 -88 CCTTAATAATTTAAAAAGAAAGCTGCGGAT 3 45 0 TTAAAAAGAA 0.850325 -27 TACTCAAAAATATAAAAGAAAAC 6 38 0 TCAAAAATAT 0.860595 -13 CAAAGTATCAAAAATAAAGGGGCTTAA 9 8 1 TCAAAAATAA 0.958261 -62 TTGCCAAAACTCCAAAATAAAACCGCACTT 14 83 0 TCCAAAATAA 0.906604 -105 TTTATAAATTTCAAAAATATGCAAAAATAG 14 121 1 TCAAAAATAT 0.860595 -67 GTTACCCATAATAAAAATAAAAACTAAGTC 14 154 0 ATAAAAATAA 0.786004 -34 GACATTTTTATTATAAATAATGGC 16 5 0 TTATAAATAA 0.784749 -166 TATATTTTGATCATAAATAATTTACGATAA 18 41 1 TCATAAATAA 0.799356 -167 GCATTTTATATTAAAAATAAACCTACTTAC 20 43 1 TTAAAAATAA 0.954851 -258 TTTTTACATTTTCAAAATAAGAAAAATTTT 20 164 1 TTCAAAATAA 0.899473 -137 TTTTTATTCATTAAAAAGAATTTTTGCGAT 20 199 1 TTAAAAAGAA 0.850325 -102 GAATTAAATCATAAAAATAAGCTAAATAGT 23 37 0 ATAAAAATAA 0.786004 -122 AGCAAAATAATCAAGAATAAACACTAAAAA 23 71 0 TCAAGAATAA 0.75699 -88 TAATCAATAATTAAAAATATAAAACCAGAA 23 125 0 TTAAAAATAT 0.850536 -34 ********** Masking position 6 Map Score: 17.901 Number of sites scoring better than the average of aligned sites = 171 Number in coding regions = 107 Number in noncoding regions = 64 Number of orfs with sites within 600 bp upstream = 67 Fraction of orfs with sites within 600 bp upstream = 0.0107613 Motif number 5 GATAAAAATTTACCGCACTT 5 1 0 TACCGCACTT 0.980597 -71 AAAAGAAAACGACCGCACTTTGCGACCGTT 6 18 0 GACCGCACTT 0.996218 -33 CCTAAAAAGCGACGGCATTTGCACCATTTT 11 59 0 GACGGCATTT 0.968114 -73 CTTAAATTTTAACCGCACTTCTCAAATAGC 14 47 1 AACCGCACTT 0.988774 -141 TCCAAAATAAAACCGCACTTCACGACGCTA 14 73 0 AACCGCACTT 0.988774 -115 AGCAAAATTTGACGGGATTTTGATCTACA 19 10 0 GACGGGATTT 0.853757 -86 GGGAAAAAACGACCGCACTTTT 24 59 1 GACCGCACTT 0.996218 -12 ********** Masking position 7 Map Score: 12.1061 Number of sites scoring better than the average of aligned sites = 1233 Number in coding regions = 821 Number in noncoding regions = 412 Number of orfs with sites within 600 bp upstream = 273 Fraction of orfs with sites within 600 bp upstream = 0.0438484 Motif number 6 CTTACCACACAAAATAGTGATATAATTTTTTA 1 124 1 AAAAAGTGAA 0.723262 -49 GTCTCAATAATTAACAAGGAAATCATT 1 156 1 TTAAAAGGAA 0.624587 -17 TGCACAGTTCTAACAAGGGAAAAGT 7 12 1 TAACAGGGAA 0.976599 -15 TTAAACAATGGATATGATAAT 12 3 1 AAACATGGAA 0.887495 -19 TAATAAATGCAAACTAAGGAGATAAAAG 13 60 1 AAACAAGGAA 0.952228 -18 AAAATATGCAAAAATAGGGCGACTTAGTTTTT 14 134 1 AAAAAGGGCA 0.926599 -54 TTGCTAAAGCTAAAGAGGGAGACTGACTATA 17 10 0 TAAAAGGGAA 0.949728 -28 TTATAGATTATAACAAGGAAAAAGTT 18 5 0 TAACAGGAAA 0.749665 -203 AGTATGGAAAAAACGAGGGAGAGAAACGATTA 20 253 0 AAACAGGGAA 0.987726 -48 AGATTTTCAAATAAAAAGGAAAAAAT 20 285 1 ATAAAAGGAA 0.762346 -16 TTGAAAAAGGATACTAGGGCAATTTTCTGGTT 23 101 1 ATACAGGGCA 0.908386 -58 ATTTTACCAAAAACAAGGGAAAAAACGACCGC 24 43 1 AAACAGGGAA 0.987726 -28 **** ***** * Masking position 6 Map Score: 10.6807 Number of sites scoring better than the average of aligned sites = 136 Number in coding regions = 102 Number in noncoding regions = 34 Number of orfs with sites within 600 bp upstream = 38 Fraction of orfs with sites within 600 bp upstream = 0.00610344 Motif number 7 CTAATGGACATAGCCCTAAATATGAGAGGT 1 30 1 TAGCCCTAAA 0.892021 -143 AAAAAACCTGTTGCTAAAAAGTATTGTTGT 1 73 0 TTGCTAAAAA 0.941054 -100 TTTTATTTTCTTGCCAAGAAAATAATGATC 2 233 0 TTGCCAAGAA 0.921884 -68 AAGTATAGTATTGCTCAAAAATTGTAGAAC 2 279 0 TTGCTCAAAA 0.919149 -22 AAAAGGCTTTTTGCCAAAACTCCAAAATAA 14 93 0 TTGCCAAAAC 0.921884 -95 CAGTTTTTTATTGCTCAAAATGTTAGCATT 15 40 1 TTGCTCAAAA 0.919149 -62 TTAATATAAAATGCCAAAAAATAGTTTGAC 20 27 0 ATGCCAAAAA 0.888425 -274 TTCTTACTTAGCCATAAAATTGTGAAAT 22 9 1 TAGCCATAAA 0.920651 -71 AAATAAACAATAGCCATAAAATTTCACAAT 22 29 0 TAGCCATAAA 0.920651 -51 TTTTTTCATTTTACCAAAAACAAGGGAAAA 24 36 1 TTACCAAAAA 0.831763 -35 ********** Masking position 9 Map Score: 6.39633 Number of sites scoring better than the average of aligned sites = 462 Number in coding regions = 397 Number in noncoding regions = 65 Number of orfs with sites within 600 bp upstream = 55 Fraction of orfs with sites within 600 bp upstream = 0.00883392 Motif number 8 AAATGGATAAAAATTTACCGCACTT 5 5 0 AAATTACCGC 0.894208 -67 AATATAAAAGAAAACGACCGCACTTTGCGAC 6 22 0 AAAACACCGC 0.987388 -29 ATACGCCTAAAAAGCGACGGCATTTGCACCA 11 63 0 AAAGCACGGC 0.96398 -69 AAAACTCCAAAATAAAACCGCACTTCACGAC 14 77 0 AATAAACCGC 0.81597 -111 TGTAAATAAAAAAGCCATCGCTTGACCAATT 16 110 0 AAAGCATCGC 0.947525 -61 CATACTTATGAAAGTAACCGCTTTCAATTTA 18 68 0 AAAGTACCGC 0.977832 -140 AATGCTACCTCGACTAATCAA 23 148 0 AATGCACCTC 0.868598 -11 AACAAGGGAAAAAACGACCGCACTTTT 24 54 1 AAAACACCGC 0.987388 -17 ***** ***** Masking position 7 Map Score: 5.62767 Number of sites scoring better than the average of aligned sites = 251 Number in coding regions = 197 Number in noncoding regions = 54 Number of orfs with sites within 600 bp upstream = 43 Fraction of orfs with sites within 600 bp upstream = 0.00690652 Motif number 9 CAGGTTTTTTATTTTATTGAAAATCACCATTCT 1 93 1 ATTATGAAAA 0.950037 -80 ATCGACCAGCAGCTTATTGAAAAACAA 3 5 0 ATTATGAAAA 0.950391 -67 AAGTTATTTCAGATTATTCAAAAAACAATTTCT 14 17 0 ATTATCAAAA 0.760237 -171 AGTAAATTTGAAATTAGTGTAAACCTTTGTAAA 16 135 0 ATTATGTAAA 0.959354 -36 AACCGCTTTCAATTTATCGTAAATTATTTATGA 18 51 0 ATTACGTAAA 0.951145 -157 AATTTATACTAAATTATTGTAAATAAACCGTGA 18 147 0 ATTATGTAAA 0.959354 -61 AATTTAGTATAAATTAATGTAATCGTTTACATT 18 165 1 ATTATGTAAT 0.788171 -43 GATGGTTGCTATTTTAACGTAAAATCAAATAAT 21 16 0 ATTACGTAAA 0.951144 -44 AATTTTTTTCATTTTACCAAAAACAAGGGAAAA 24 33 1 ATTACAAAAA 0.638049 -38 * *** ****** Masking position 6 Map Score: 5.32503 Number of sites scoring better than the average of aligned sites = 106 Number in coding regions = 79 Number in noncoding regions = 27 Number of orfs with sites within 600 bp upstream = 26 Fraction of orfs with sites within 600 bp upstream = 0.00417604 Motif number 10 GTTCGTTATACTATCCAAAACATTCCATCA 11 25 0 CTATCCAAAA 0.601386 -107 AATAGTATTTCAATGCACAAAGTATAAAGA 11 96 0 CAATGCACAA 0.762613 -36 GATATCTAATAAATGCAAACTAAGGAGATA 13 54 1 AAATGCAAAC 0.840249 -24 AATTTCAAAAATATGCAAAAATAGGGCGAC 14 127 1 ATATGCAAAA 0.932194 -61 TAACTGGCTCCAATGCTAACATTTTGAGCA 15 51 0 CAATGCTAAC 0.672375 -51 CCCTCTTTGCTAAAGCTAAAGAGG 17 24 0 CTTTGCTAAA 0.501499 -14 AAATAAGAAAATAAGCAAAATTTTTTATGA 18 106 0 ATAAGCAAAA 0.801054 -102 TTTTAATATAAAATGCCAAAAAATAGTTTG 20 29 0 AAATGCCAAA 0.77337 -272 CTTATTTTGAAAATGTAAAAAATCCAATAA 20 155 0 AAATGTAAAA 0.544113 -146 ATGAATAAAAAATTGCAAAATTTTTCTTAT 20 180 0 AATTGCAAAA 0.772706 -121 AATCATAAAAATAAGCTAAATAGTTTATTT 23 31 0 ATAAGCTAAA 0.563852 -128 TATCCTTTTTCAAAGCAAAATAATCAAGAA 23 84 0 CAAAGCAAAA 0.865685 -75 ATCAGGTATCCTATGCAAAAATTTTTTTCA 24 14 1 CTATGCAAAA 0.943521 -57 GTTTTTGGTAAAATGAAAAAAATTTTTGCA 24 27 0 AAATGAAAAA 0.544113 -44 ********** Masking position 9 Map Score: 4.742 Number of sites scoring better than the average of aligned sites = 833 Number in coding regions = 741 Number in noncoding regions = 92 Number of orfs with sites within 600 bp upstream = 82 Fraction of orfs with sites within 600 bp upstream = 0.0131706 Motif number 11 GTAAGAATGGTGATTTTCAATAAAATAAAA 1 99 0 TGATTTTCAA 0.953854 -74 TATAGTCAATTGATTTTAAACTTGTTCCAT 2 150 0 TGATTTTAAA 0.781341 -151 AAGAAAATAATGATCTTCAAAATAAAATTG 2 218 0 TGATCTTCAA 0.811704 -83 TTGTTTTTCAATAAGCTGCTG 3 2 1 TGTTTTTCAA 0.933857 -70 TCCGCAGCTTTCTTTTTAAATTATTAAGGA 3 46 1 TCTTTTTAAA 0.622944 -26 CTTTATCAATAGTATTTCAATGCACAAAGT 11 103 0 AGTATTTCAA 0.553249 -29 AATCTTATGCCCATTTTCAATTATGGTTAA 19 63 1 CCATTTTCAA 0.903987 -33 TGGATTTTTTACATTTTCAAAATAAGAAAA 20 159 1 ACATTTTCAA 0.897139 -142 TTTCCATACTAGATTTTCAAATAAAAAGGA 20 275 1 AGATTTTCAA 0.92798 -26 GCCCTAGTATCCTTTTTCAAAGCAAAATAA 23 91 0 CCTTTTTCAA 0.865429 -68 ********** Masking position 6 Map Score: 4.44514 Number of sites scoring better than the average of aligned sites = 310 Number in coding regions = 257 Number in noncoding regions = 53 Number of orfs with sites within 600 bp upstream = 44 Fraction of orfs with sites within 600 bp upstream = 0.00706714 Motif number 12 TTGACTATAGTTTATTACCTAAAGATTATGA 2 171 1 TTTATTACTA 0.904411 -130 CGCAGCTTTCTTTTTAAATTATTAAGGAGCA 3 48 1 TTTTTAAATA 0.463237 -24 ATGGCGGCGTTTTATTAACTTTAATCGGGT 4 67 1 TTTATTAATT 0.880226 -20 TTTTTATGGTTTTATAACATAATTTTGTAGA 5 37 0 TTTATAACTA 0.790289 -35 TTAGTTTGCATTTATTAGATATCCTATCAAT 13 46 0 TTTATTAGTA 0.728785 -32 AAAAAGCCTTTTTATAAATTTCAAAAATATG 14 111 1 TTTATAAATT 0.745369 -77 ATATGCTAATTTTATTAAGTTTATTAGTTAA 20 91 0 TTTATTAATT 0.880226 -210 TCTTATTGGATTTTTTACATTTTCAAAATAA 20 153 1 TTTTTTACTT 0.663926 -148 TTTGCAATTTTTTATTCATTAAAAAGAATTT 20 191 1 TTTATTCATA 0.645549 -110 CTATTGTTTATTTATTACTTTGTTAATTGTT 22 46 1 TTTATTACTT 0.888418 -34 AGCTAAATAGTTTATTTATTATTCACAATCT 23 17 0 TTTATTTATA 0.551332 -142 ******** ** Masking position 5 Map Score: 1.54326 Number of sites scoring better than the average of aligned sites = 176 Number in coding regions = 130 Number in noncoding regions = 46 Number of orfs with sites within 600 bp upstream = 39 Fraction of orfs with sites within 600 bp upstream = 0.00626405 Motif number 13 ********** No masking Map Score: 1.54431e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 14 ********** No masking Map Score: 1.54431e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 15 ********** No masking Map Score: 1.54431e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0