AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00910_hinf_reg_300.orf -o00910_hinf_300.ace -a/home/amcguire/genomes/ORF_hinf.txt -z/home/amcguire/genomes/hinf.fna -g0.38 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.38 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: HI0535 74 urease accessory protein (ureH) Input sequences: #1 HI0122 274 cystathionine beta-lyase (metC) #2 HI0189 300 glutamate dehydrogenase (gdhA) #3 HI0534 177 aspartate ammonia-lyase (aspA) #4 HI0536 102 urease accessory protein (ureG) #5 HI0537 107 urease accessory protein (ureF) #6 HI0538 127 urease accessory protein (ureE) #7 HI0540 75 urease, beta subunit (ureB) #8 HI0541 162 urease, gamma subunit (ureA) #9 HI0564 153 aspartate--ammonia ligase (asnA) #10 HI0596 300 ornithine carbamoyltransferase (arcB) #11 HI0745 225 L-asparaginase II (ansB) #12 HI0865 230 glutamine synthetase (glnA) Motif number 1 AATACCGCAGATGAAGTAAAATCAGGTGCGGA 1 196 1 ATAATAAAAT 0.777813 -79 AGTTAATTTAAATAAGGAAATAT 1 262 1 AAAAGAAATA 0.521604 -13 TGTTTTATGAAAAAACAAAATTAGG 2 4 0 AAAAAAAATT 0.907282 -297 TAATGATATTTTCAATAAAAATATAGAGCAGA 2 73 0 TTAAAAAAAT 0.814799 -228 TTATTAGATAAAAAATAAAAAACGACAGAAAA 2 113 0 AAAAAAAAAA 0.730797 -188 AAAAGGAAAAAGTAAAGAAATTATCTAAAAAA 2 153 0 AGAAGAAATT 0.81484 -148 AACCATTTTTATAAAGGAAATTTAAAGAAAAG 2 180 0 ATAAGAAATT 0.811983 -121 ACGAGGCGAATACAATAAAAATACAATACACA 2 252 1 TAAAAAAAAT 0.901617 -49 AACATCAACAAAGAGGGAAATTCATT 2 285 1 AAAGGAAATT 0.631601 -16 AACTAATCCGAAAAATGAAAATATGTCTTGAG 3 73 1 AAAAGAAAAT 0.953685 -105 TAGAAATTTCAAGAAGAAAAAACTTGATGAAG 3 126 0 AAAAAAAAAA 0.730797 -52 GATTTGCCCCTACAAGTAAAATCTCAATAAAA 4 22 0 TAAATAAAAT 0.748972 -81 CTTTAGCCCACAAAATAAAAATATCAATGGTG 7 23 1 CAAAAAAAAT 0.797592 -53 ACAAATTATTAAGAAGGAAATTAATC 8 5 0 AAAAGAAATT 0.899959 -158 AGCCCCTTGAAAGAAAAAAAATCCTCCTTATA 8 51 0 AAAAAAAAAT 0.957261 -112 AAAAATCTAAAATAGGAAAAATATTTTGTCAG 8 94 0 AAAGAAAAAT 0.810197 -69 TAATAAATTAAGGAATGAAAAT 8 151 1 AGAAGAAAAT 0.90969 -12 TTGTGAAAAAATTAAATAAAATCTAAAGGAGG 9 18 0 ATAATAAAAT 0.777813 -136 AAGAAAAGAAAGTAAATAAAATACTTGAAATA 9 71 1 AGAATAAAAT 0.781048 -83 AATAAAATACTTGAAATAAAATCATTATTTAC 9 85 1 TTAATAAAAT 0.588874 -69 GTAGATGAATTTAAACGAAAATATGTTTTAGT 10 55 0 TTAAGAAAAT 0.801768 -246 CTAAAAATCTCGCAATAAAATTCTACATACTG 10 147 1 CGAAAAAATT 0.457161 -154 ATAAGAGAGGTAAAATGAAATTTGTTGTCGTT 10 195 0 TAAAGAAATT 0.78636 -106 TGGGTTATCTTTCAAAAAAATTATGCTTAAAT 11 64 1 TTAAAAAATT 0.657778 -162 TTATACAATCAACAAAAAAAATTATGTGATCG 11 114 1 AAAAAAAAAT 0.957261 -112 TTCTCCTAAGATGAATAAAAATTTCTCCAAAG 11 200 0 ATAAAAAAAT 0.914913 -26 TATGTAACAATGCAATAAAAATTGCATCTTAT 12 30 0 TGAAAAAAAT 0.817622 -201 ACATTTGTCGAAAAGGAAAAATTATACATGTA 12 96 1 AAAGAAAAAT 0.810197 -135 GTCATAGCAGAAAAAGAAAAATACATGTATAA 12 117 0 AAAAAAAAAT 0.957261 -114 CTATGACTAGAATAAGAAAAATAAATTTCATG 12 142 1 AAAAAAAAAT 0.957261 -89 ** ** ****** Masking position 8 Map Score: 37.2888 Number of sites scoring better than the average of aligned sites = 831 Number in coding regions = 608 Number in noncoding regions = 223 Number of orfs with sites within 600 bp upstream = 203 Fraction of orfs with sites within 600 bp upstream = 0.0326052 Motif number 2 TAAGGTCGCTTTTTATAAATAATTGATAAAATT 1 81 1 TTTAAATAAT 0.868804 -194 TAGTAAATCACTACGAAAATATGTTTTATGAAA 2 24 0 CTAAAATATG 0.714256 -277 ATCGTATTTATTAGATAAAAAATAAAAAACGAC 2 119 0 TTTAAAAAAT 0.933194 -182 AGTAAAGAAATTATCTAAAAAATATCGTATTTA 2 142 0 TTTAAAAAAT 0.933194 -159 TTTAAATTTCCTTTATAAAAATGGTTGCAAGAT 2 186 1 CTTAAAAATG 0.881422 -115 ATTAGTTTTTTTAGGGAAAAATGTTCTATCTAT 3 47 0 TTGAAAAATG 0.685671 -131 GAAGATCACATTTTCAAAAAATGCTCTCAAGAC 3 97 0 TTAAAAAATG 0.81694 -81 CAAGTAAAATCTCAATAAAAAATAACCGCAC 4 9 0 CTTAAAAAAT 0.942869 -94 ACGCCTCTTACTTGATAAATAAGAAATCATTGT 6 56 1 CTTAAATAAG 0.855779 -72 TTTCAAGGGGCTTACAAAAAATTCTGACAAAAT 8 71 1 CTAAAAAATT 0.874194 -92 ACAAAAAATTCTGACAAAATATTTTTCCTATTT 8 84 1 CTAAAATATT 0.767131 -79 TCAGCGAATTTTACGTAAAAAATCTAAAATAGG 8 110 0 TTTAAAAAAT 0.933194 -53 ATCTAATTCATTGTGAAAAAATTAAATAAAATC 9 27 0 TTAAAAAATT 0.854679 -127 TTGAGTATTATTCAGTAAATAATGATTTTATTT 9 98 0 TTTAAATAAT 0.868806 -56 AATATTACTCCTCGTTAAAAAAGGTTATCAAA 9 132 1 CTTAAAAAAG 0.925982 -22 TTATTAGAATTTAATAAAATAATCTAACTCTTT 10 112 0 TTAAAATAAT 0.824418 -189 CTTGGGTTATCTTTCAAAAAAATTATGCTTAAA 11 62 1 CTAAAAAAAT 0.921269 -164 TATTGCATTGTTACATAAAAAATGGCGCAATGA 12 45 1 TTTAAAAAAT 0.933194 -186 AAAAATAAATTTCATGAAAAAATAGCATGGCTA 12 158 1 TTGAAAAAAT 0.828802 -73 ** ******** Masking position 2 Map Score: 20.8647 Number of sites scoring better than the average of aligned sites = 506 Number in coding regions = 303 Number in noncoding regions = 203 Number of orfs with sites within 600 bp upstream = 173 Fraction of orfs with sites within 600 bp upstream = 0.0277867 Motif number 3 CACTTTAGCTAAAGATGGTTTATTCTAAATT 1 25 1 AAAGATGTTT 0.890319 -250 GGGCAAAAATAACTATGGTTTCAATTCCTAT 1 227 0 AACTATGTTT 0.869836 -48 CCTAATTTTGTTTTTTCATAAAAC 2 4 1 AATTTTGTTT 0.640464 -297 ATCACTACGAAAATATGTTTTATGAAAAAAC 2 20 0 AAATATGTTT 0.974801 -281 GATTTACTAGAAATATGATTTGTAATCTGCT 2 48 1 AAATATGTTT 0.974624 -253 TTTCCTTTATAAAAATGGTTGCAAGATTAAA 2 192 1 AAAAATGTTG 0.724427 -109 TTTTTTAGGGAAAAATGTTCTATCTATCAAT 3 43 0 AAAAATGTCT 0.89239 -135 CGAAAAATGAAAATATGTCTTGAGAGCATTT 3 81 1 AAATATGCTT 0.850261 -97 CACATTTTCAAAAAATGCTCTCAAGACATAT 3 93 0 AAAAATGTCT 0.892392 -85 CATTTTTTGAAAATGTGATCTTCATCAAGTT 3 107 1 AAATGTGTCT 0.861268 -71 GTTCAAGGGCAAATGTGATTTGCCCCTACAA 4 39 0 AAATGTGTTT 0.930676 -64 TTATTCAGTAAATAATGATTTTATTTCAAGT 9 93 0 AATAATGTTT 0.786351 -61 ATTTAAACGAAAATATGTTTTAGTTTATTTT 10 48 0 AAATATGTTT 0.974801 -253 TCGAGATCATAAATTTGTTTTTCCATTGTTT 11 143 1 AAATTTGTTT 0.896998 -83 ******* *** Masking position 2 Map Score: 15.6768 Number of sites scoring better than the average of aligned sites = 183 Number in coding regions = 155 Number in noncoding regions = 28 Number of orfs with sites within 600 bp upstream = 32 Fraction of orfs with sites within 600 bp upstream = 0.00513974 Motif number 4 CCTTAGGTGGCTTTTTTTATCATCAGAGAT 1 56 0 CTTTTTTTAT 0.776991 -219 ACTACGAAAATATGTTTTATGAAAAAACAA 2 18 0 TATGTTTTAT 0.8526 -283 TGTCGTTTTTTATTTTTTATCTAATAAATA 2 118 1 TATTTTTTAT 0.926304 -183 ATAAATACGATATTTTTTAGATAATTTCTT 2 141 1 TATTTTTTAG 0.8526 -160 GAATTTCCCTCTTTGTTGATGTTGTGTGTA 2 278 0 CTTTGTTGAT 0.660859 -23 GTGCGGTTATTTTTTATTGAGATTTTA 4 8 1 TATTTTTTAT 0.926304 -95 ATATTTTTCCTATTTTAGATTTTTTACGTA 8 102 1 TATTTTAGAT 0.600559 -61 CGAGGAGTAATATTTTTGAGTATTATTCAG 9 116 0 TATTTTTGAG 0.875465 -38 TGTTTTAGTTTATTTTTGATGAAGAGGAAT 10 34 0 TATTTTTGAT 0.93856 -267 TAAACGAAAATATGTTTTAGTTTATTTTTG 10 46 0 TATGTTTTAG 0.726914 -255 TTTATTGTTATTTGTTTGATTTCTAATAGT 10 85 0 TTTGTTTGAT 0.746113 -216 ACATAATTTTTTTTGTTGATTGTATAACCT 11 111 0 TTTTGTTGAT 0.746113 -115 TTTGTTTTTCCATTGTTTATAAATAACTTA 11 156 1 CATTGTTTAT 0.793192 -70 TTCATTGCGCCATTTTTTATGTAACAATGC 12 49 0 CATTTTTTAT 0.89287 -182 ********** Masking position 9 Map Score: 11.1051 Number of sites scoring better than the average of aligned sites = 379 Number in coding regions = 250 Number in noncoding regions = 129 Number of orfs with sites within 600 bp upstream = 123 Fraction of orfs with sites within 600 bp upstream = 0.0197559 Motif number 5 ATCTTTAGCTAAAGTGCGGTCAATTTTTCT 1 11 0 AAAGTGCGGT 0.984193 -264 GAAGTAAAATCAGGTGCGGATAGGAATTGA 1 208 1 CAGGTGCGGA 0.966761 -67 TAAATCCGTTAAAGAGCGGT 5 1 0 AAAGAGCGGT 0.957976 -107 TTAACGGATTTAGGTGCGTTGTTGCACTTG 5 19 1 TAGGTGCGTT 0.849435 -89 TAATAATTTGTAAGTGCGGTTTCTATATAA 8 26 1 TAAGTGCGGT 0.988916 -137 AGTTGCATTATAAGAGAGGTAAAATGAAAT 10 206 0 TAAGAGAGGT 0.784837 -95 AAAGATAACCCAAGTGCGGTTATACTTGAG 11 46 0 CAAGTGCGGT 0.992923 -180 AACCTTTATGCAAGTACGGAATTTAAGCAT 11 86 0 CAAGTACGGA 0.851534 -140 ********** Masking position 2 Map Score: 7.40827 Number of sites scoring better than the average of aligned sites = 1735 Number in coding regions = 1214 Number in noncoding regions = 521 Number of orfs with sites within 600 bp upstream = 328 Fraction of orfs with sites within 600 bp upstream = 0.0526823 Motif number 6 TTTAGCTAAAGTGCGGTCAATTTTTCT 1 8 0 GTGCGGTCAA 0.949042 -267 GTGCGGTTATTTTTTATTGA 4 1 1 GTGCGGTTAT 0.983749 -102 CCGTAGGGTGGGCTTTAGCCCACAAAA 7 8 1 GTGGGCTTTA 0.937247 -68 TCCTTGTAGGGTGGGCTTTAGCCCACCATT 7 48 0 GTGGGCTTTA 0.937247 -28 TAATTTGTAAGTGCGGTTTCTATATAAGGA 8 29 1 GTGCGGTTTC 0.964628 -134 GATAACCCAAGTGCGGTTATACTTGAGCCC 11 43 0 GTGCGGTTAT 0.983749 -183 ACGTTATAATGTGCGCTTATCTTAATAAGA 12 190 1 GTGCGCTTAT 0.978755 -41 ********** Masking position 7 Map Score: 6.63161 Number of sites scoring better than the average of aligned sites = 358 Number in coding regions = 208 Number in noncoding regions = 150 Number of orfs with sites within 600 bp upstream = 121 Fraction of orfs with sites within 600 bp upstream = 0.0194346 Motif number 7 ATGGAAAAAATAAAGAGAAAACAACAAATAA 1 160 0 TAAAGAGAAA 0.77024 -115 TAAATTAACTTATAGGGCAAAAATAACTATG 1 241 0 TATAGGGAAA 0.972532 -34 TCAATAAAAATATAGAGCAGATTACAAATCA 2 63 0 TATAGAGAGA 0.832457 -238 CAACCATTTTTATAAAGGAAATTTAAAGAAA 2 182 0 TATAAAGAAA 0.697436 -119 GATTAGTTTTTTTAGGGAAAAATGTTCTATC 3 50 0 TTTAGGGAAA 0.880247 -128 AGATTTTACTTGTAGGGGCAAATCACATTTG 4 30 1 TGTAGGGCAA 0.972881 -73 TTCGTTGATATATAGGGGCAAATGTAACTTG 4 71 1 TATAGGGCAA 0.970685 -32 GGGTGTAGGGGCAAGTTACATTTG 4 89 0 TGTAGGGCAA 0.972881 -14 AAAGTGGATTTATAGAGGAAAG 6 116 1 TATAGAGAAA 0.963482 -12 TATTCCCCAATGTATAGTCAAAACACAAGGA 10 273 1 TGTATAGCAA 0.700197 -28 GTACTTAATCAGTAGAGAAAACA 11 3 0 AGTAGAGAAA 0.78411 -223 ******* *** Masking position 4 Map Score: 8.44919 Number of sites scoring better than the average of aligned sites = 72 Number in coding regions = 44 Number in noncoding regions = 28 Number of orfs with sites within 600 bp upstream = 28 Fraction of orfs with sites within 600 bp upstream = 0.00449727 Motif number 8 GATTTCAATAGCCTACCAATTTTC 3 5 0 GCCTACCAAT 0.907896 -173 GTGGGCTAAAGCCCACCCTACGG 7 4 0 GCCCACCCTA 0.991306 -72 GTGGGCTTTAGCCCACAAAATAAAAATATC 7 18 1 GCCCACAAAA 0.933883 -58 GTGGGCTTTAGCCCACCATTGATATTTTTA 7 38 0 GCCCACCATT 0.986615 -38 GTGGGCTAAAGCCCACCCTACAAGGAACAA 7 52 1 GCCCACCCTA 0.991306 -24 ********** Masking position 5 Map Score: 2.96847 Number of sites scoring better than the average of aligned sites = 77 Number in coding regions = 40 Number in noncoding regions = 37 Number of orfs with sites within 600 bp upstream = 19 Fraction of orfs with sites within 600 bp upstream = 0.00305172 Motif number 9 ATTAGGCAATGGAAAAAATAAAGAGAAAAC 1 169 0 GGAAAAAATA 0.974118 -106 TAACTTATAGGGCAAAAATAACTATGGTTT 1 237 0 GGCAAAAATA 0.897893 -38 ATATGTTTTATGAAAAAACAAAATTAGG 2 9 0 TGAAAAAACA 0.925339 -292 TTAAAGAAAAGGAAAAAGTAAAGAAATTAT 2 161 0 GGAAAAAGTA 0.886994 -140 AGTTTTTTTAGGGAAAAATGTTCTATCTAT 3 47 0 GGGAAAAATG 0.771427 -131 CAAAAAATTCTGACAAAATATTTTTCCTAT 8 85 1 TGACAAAATA 0.788429 -78 TAATTCATTGTGAAAAAATTAAATAAAATC 9 27 0 TGAAAAAATT 0.735757 -127 TATACATTGGGGAATAAACATACATCATTC 10 259 0 GGAATAAACA 0.749698 -42 TTATAAACAATGGAAAAACAAATTTATGAT 11 148 0 TGGAAAAACA 0.842001 -78 TTGTCGAAAAGGAAAAATTATACATGTATT 12 100 1 GGAAAAATTA 0.841165 -131 ATAAATTTCATGAAAAAATAGCATGGCTAC 12 162 1 TGAAAAAATA 0.951896 -69 ********** Masking position 6 Map Score: 5.26762 Number of sites scoring better than the average of aligned sites = 403 Number in coding regions = 330 Number in noncoding regions = 73 Number of orfs with sites within 600 bp upstream = 67 Fraction of orfs with sites within 600 bp upstream = 0.0107613 Motif number 10 GATGATAAAAAAAGCCACCTAAGGTCGCTT 1 62 1 AAAGCCACCT 0.97975 -213 TTATTTATAAAAAGCGACCTTAGGTGGCTT 1 73 0 AAAGCGACCT 0.917291 -202 TGGAATGGTTAAATCCACCAATCGGTAAAG 5 59 0 AAATCCACCA 0.96902 -49 TTTCCTCTATAAATCCACTTTCTTCTCTTC 6 107 0 AAATCCACTT 0.95154 -21 GAAAGAAAAAAAATCCTCCTTATATAGAAA 8 45 0 AAATCCTCCT 0.96902 -118 TAGGAAATCCTCTATGGTTAGTCT 12 217 0 AAATCCTCTA 0.849958 -14 ********** Masking position 3 Map Score: 2.88046 Number of sites scoring better than the average of aligned sites = 112 Number in coding regions = 95 Number in noncoding regions = 17 Number of orfs with sites within 600 bp upstream = 20 Fraction of orfs with sites within 600 bp upstream = 0.00321234 Motif number 11 TGGTTTATTCTAAATTATCTCTGATGATAA 1 40 1 TAAATTATCT 0.939358 -235 TTTCCTTATTTAAATTAACTTATAGGGCAA 1 252 0 TAAATTAACT 0.952764 -23 AAAAAGTAAAGAAATTATCTAAAAAATATC 2 149 0 GAAATTATCT 0.849939 -152 ATAATGACGATAAATTAACTAACCCAAAAA 3 157 1 TAAATTAACT 0.952764 -21 TTTCGTATAATAAATTAAGGAATGAAAAT 8 144 1 TAAATTAAGG 0.82533 -19 ATCAACAAAAAAAATTATGTGATCGAGATC 11 121 1 AAAATTATGT 0.74421 -105 GTAGTCTAACTAAATTAAGTTATTTATAAA 11 171 0 TAAATTAAGT 0.938861 -55 ********** Masking position 4 Map Score: 2.41608 Number of sites scoring better than the average of aligned sites = 74 Number in coding regions = 51 Number in noncoding regions = 23 Number of orfs with sites within 600 bp upstream = 22 Fraction of orfs with sites within 600 bp upstream = 0.00353357 Motif number 12 ACGTCAGAATTATTTGTTGTTTTCTCTTTATTT 1 151 1 TTTGTGTTTT 0.967089 -124 CCTAATTTTGTTTTTTCATAAAACA 2 3 1 TTTTTTTTTT 0.661567 -298 ACCTGATGGTTTTCTGTCGTTTTTTATTTTTTA 2 104 1 TCTGTGTTTT 0.910588 -197 GATGTTGTGTGTATTGTATTTTTATTGTATTCG 2 258 0 GTTGTTTTTT 0.709034 -43 CGGTTATTTTTTATTGAGATTTTACTTGTAGGG 4 14 1 TTTGAATTTT 0.416995 -89 GAAATCATTGTAGCTGTAGTTTTTCTTTCGAAG 6 78 1 TCTGTGTTTT 0.910588 -50 CCACCATTGATATTTTTATTTTGTGGGCTAAAG 7 23 0 TTTTTTTTTG 0.665768 -53 ATCTAACTCTTTATTGTTATTTGTTTGATTTCT 10 91 0 TTTGTATTTG 0.872593 -210 AAAATGAAATTTGTTGTCGTTTTTCAACTGGTA 10 183 0 TTTGTGTTTT 0.967089 -118 TTCGAGATACTGCTTGTTGTTCGAACAGTTGCA 10 229 0 TTTGTGTTCG 0.825261 -72 AATAATCTCCTTGTGTTTTGACTATACATT 10 281 0 TTTGTTTTTG 0.940275 -20 CACATAATTTTTTTTGTTGATTGTATAACCTTT 11 109 0 TTTGTGATTG 0.761139 -117 GGAAAAATTATACATGTATTTTTCTTTTTCTGC 12 110 1 TATGTTTTTT 0.662514 -121 * **** ***** Masking position 5 Map Score: 4.492 Number of sites scoring better than the average of aligned sites = 357 Number in coding regions = 306 Number in noncoding regions = 51 Number of orfs with sites within 600 bp upstream = 48 Fraction of orfs with sites within 600 bp upstream = 0.0077096 Motif number 13 GCTAACGAGCTTTAATTTTATCAATTATTTATAA 1 93 0 TTTAATATCA 0.899675 -182 AAATTAGCCATTGCATATTGTCTATGCGCCTCAC 2 220 1 TTGCATGTCA 0.971726 -81 AGGTGCGTTGTTGCACTTGGTCGATCCAACTTTA 5 30 1 TTGCATGTCA 0.971935 -78 CTTTTCTTGGTTGAATATCATCTAATTCATTGTG 9 45 0 TTGAATATCA 0.959332 -109 CATATTTTCGTTTAAATTCATCTACTATTAGAAA 10 62 1 TTTAATATCA 0.899796 -239 GCAATAAAAATTGCATCTTATCCAATTAAAGCAT 12 17 0 TTGCATATCA 0.976619 -214 ***** * *** * Masking position 8 Map Score: 0.202149 Number of sites scoring better than the average of aligned sites = 74 Number in coding regions = 61 Number in noncoding regions = 13 Number of orfs with sites within 600 bp upstream = 14 Fraction of orfs with sites within 600 bp upstream = 0.00224863 Motif number 14 CTTTTTTTATCATCAGAGATAATTTAGAATAA 1 44 0 CATAAGATAA 0.717183 -231 TATAAAGGAAATTTAAAGAAAAGGAAAAAGTA 2 171 0 ATTAAGAAAA 0.697411 -130 TTTAAATTTCCTTTATAAAAATGGTTGCAAGA 2 186 1 CTTAAAAAAT 0.638268 -115 AATTTATCGTCATTATAGAAATTTCAAGAAGA 3 141 0 CATAAGAAAT 0.924854 -37 TTGTAAGCCCCTTGAAAGAAAAAAAATCCTCC 8 56 0 CTTAAGAAAA 0.963483 -107 AAATAAAATACTTGAAATAAAATCATTATTTA 9 84 1 CTTAATAAAA 0.721185 -70 CGTACTTAATCAGTAGAGAAAACA 11 3 0 CAGAAGAAAA 0.789847 -223 AGTTAGACTACTTTGGAGAAATTTTTATTCAT 11 190 1 CTTGAGAAAT 0.927699 -36 TTTTATTCATCTTAGGAGAAATCT 11 212 1 CTTGAGAAAT 0.927702 -14 TTATTCTAGTCATAGCAGAAAAAGAAAAATAC 12 125 0 CATGAGAAAA 0.927702 -106 *** * ****** Masking position 7 Map Score: 2.30735 Number of sites scoring better than the average of aligned sites = 195 Number in coding regions = 156 Number in noncoding regions = 39 Number of orfs with sites within 600 bp upstream = 36 Fraction of orfs with sites within 600 bp upstream = 0.0057822 Motif number 15 ********** No masking Map Score: 3.67594e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0