AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00051_hpyl_reg_100.orf -o00051_hpyl_100.ace -a/home/amcguire/genomes/ORF_hpyl.txt -z/home/amcguire/genomes/hpyl.fna -0.39 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.38 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 HP0004 121 carbonic anhydrase (icfA) #2 HP0038 126 H. pylori predicted coding region HP0038 #3 HP0042 62 trbI protein #4 HP0043 69 mannose-6-phosphate isomerase (pmi) or (algA) #5 HP0044 41 GDP-D-mannose dehydratase (rfbD) #6 HP0175 300 cell binding factor 2 #7 HP0194 214 triosephosphate isomerase (tpi) #8 HP0230 107 CTP:CMP-3-deoxy-D-manno-octulosonate-cytidylyl-transferase (kdsB) #9 HP0866 40 transcription elongation factor GreA (greA) #10 HP0869 58 hydrogenase expression/formation protein (hypA) #11 HP0870 207 flagellar hook (flgE) #12 HP1101 65 glucose-6-phosphate dehydrogenase (g6pD) #13 HP1154 130 H. pylori predicted coding region HP1154 #14 HP1260 101 NADH-ubiquinone oxidoreductase, NQO7 subunit (NQO7) #15 HP1376 171 (3R)-hydroxymyristoyl-(acyl carrier protein) dehydratase (fabZ) #16 HP1385 70 fructose-1,6-bisphosphatase Motif number 1 GAAAGCCCTTTAAAGTGTAAAA 1 2 1 AAACCCTTTA 0.941781 -120 AAAGTGTAAAATAACGCCATTATAACAAAAA 1 22 1 ATACGCCATT 0.922366 -100 GTTTGTTTTTAAAACGCTTATCATAGCTAAA 1 66 0 AAACGCTTAT 0.955771 -56 TCTTTAACCCTTAAATCTCATTTT 1 108 0 TTACCCTTAA 0.748302 -14 CCGCTCGCATCACCCCTTTCAAACAAGGC 3 9 1 ATCCCCCTTT 0.781768 -54 CTCAAAAATCCCCAATTAAAAACGCT 4 6 1 AAACCCCAAT 0.940773 -64 TCCCCAATTAAAAACGCTATAATAACCCTAA 4 19 1 AAACGCTATA 0.838152 -51 AAACGCTATAATAACCCTAAAAAACAAAAGA 4 30 1 ATACCCTAAA 0.851858 -40 ATTTTAAACAATAGCCCCTTTGAATTGAATT 7 127 0 ATACCCCTTT 0.972505 -88 TTACATTTTTTAAACGCTATTAGATATAATA 7 158 1 TAACGCTATT 0.807817 -57 TAGGTGGTAACTATCCCTTATTATATCTAAT 7 176 0 CTACCCTTAT 0.80454 -39 TAATACCATAAAATCCCCTATTTTGGCTTAA 8 75 1 AAACCCCTAT 0.968795 -33 AATCTTTAAATTAGCCCCTATTATATTGTAT 10 28 0 TTACCCCTAT 0.881815 -31 ACACCACCCCATAACGCTTTTTAAAGGTTAT 11 38 0 ATACGCTTTT 0.963045 -170 TGGTGTTGCAAAACCCCCTATTTTCTTATGA 11 63 1 AAACCCCTAT 0.968795 -145 GAATACCCCTTTAATTAAGATTT 12 3 1 ATACCCTTTA 0.937036 -63 CAATAACCCTTTTAGAGTGTTTT 12 53 0 ATACCCTTTT 0.97675 -13 CTTTGCATAGAAACCGCTTATGCA 15 4 0 AAACGCTTAT 0.959194 -168 TCTAAAAAAATAACCGCTATTATACCATAAG 15 96 0 TAACGCTATT 0.807833 -76 GGATTCAATTAAAGCGCTATTTTTAGCGTTG 15 132 0 AAACGCTATT 0.940809 -40 AAAAACCCTTTTATGATTTGAT 16 59 0 AAACCCTTTT 0.978009 -12 *** ******* Masking position 5 Map Score: 31.6221 Number of sites scoring better than the average of aligned sites = 1754 Number in coding regions = 1455 Number in noncoding regions = 299 Number of orfs with sites within 600 bp upstream = 202 Fraction of orfs with sites within 600 bp upstream = 0.0324446 Motif number 2 AAAATAACGCCATTATAACAAAAAGAAATGCAAG 1 29 1 CATTTAAAAA 0.897295 -93 AAAACAAACGAATTTTAATCAAAATGAGATTTAA 1 88 1 AATTTAAAAA 0.949674 -34 TAACAAAAAAAATTCTCATTAAATTCCTATTTAT 2 11 0 AATTTAAAAT 0.893681 -116 ACACAAGTCCCATAATAACAAAAAAAATTCTCAT 2 26 0 CATATAAAAA 0.825847 -101 AGCCCTTGCACATTGTTATGAAAACAGGTTAAAT 2 98 1 CATTTAAAAA 0.897259 -29 AGGCCCTAAAAATTACGAAGAAAACCTGATTTTC 3 36 1 AATTCAAAAA 0.867489 -27 TAAAGAAAATTTAATAAATAAAATTCAATA 5 7 1 AAATTAAATA 0.710561 -35 TGCATACAACAATAATTACGAATATTATATTCAT 6 19 1 AATATAAATA 0.821268 -282 TTTTTCTTTCCAAAAAGAATAAAACTAACACCAA 6 90 1 CAAAAAAAAA 0.601374 -211 CTAACACCAAAAAAGACAATAAATATTATTACAA 6 114 1 AAAAAAAAAT 0.593831 -187 CATTATAGCAAATTTAAAACAAAATCAGCTATCA 6 235 0 AATTAAAAAA 0.953919 -66 ACAAAACCTAAATTGAGAAAAAATTCAATTCAAA 7 106 1 AATTAAAAAT 0.902168 -109 AAAAAATGTAAATTTTAAACAATAGCCCCTTTGA 7 135 0 AATTTAAATA 0.891021 -80 AAATCCTTACAATAATAAGAAATAAGCTTTTAAT 8 36 1 AATATAAATA 0.821275 -72 AGATCGACCAAATTCATAAGAAAATAGGGGGTTT 11 73 0 AATTAAAAAA 0.953153 -135 CAATCTATGCAAAATAAAGCAAAAGTTGTTCCTA 11 159 0 AAAAAAAAAA 0.765372 -49 GTTATCCTTTAATTTAAAGAAATTCAATCTATGC 11 183 0 AATTAAAATT 0.753225 -25 ATTAAGATTTAATATATAATAATAACTCAAAAAC 12 24 1 AATAAAAATA 0.833763 -42 TTTGTTGTATAATTTTGAAAAAATACGCAACAAT 13 81 0 AATTTAAAAT 0.893742 -50 TACAACAAAGCATTTAAATTAAAAAGGATAGTCC 13 106 1 CATTAAAAAA 0.905516 -25 TCGTTAGCTGAAAAAATAAAAATTATTTTAACAT 14 14 0 AAAAAAAATT 0.395603 -88 AAACTCCTTTAATTACTAGCAAATGACAAAGCCA 14 69 0 AATTCAAAAT 0.733297 -33 ATAGCGCTTTAATTGAATCCAAAACAAGGAGTTT 15 143 1 AATTATAAAA 0.548906 -29 **** * * **** Masking position 11 Map Score: 19.9269 Number of sites scoring better than the average of aligned sites = 782 Number in coding regions = 567 Number in noncoding regions = 215 Number of orfs with sites within 600 bp upstream = 179 Fraction of orfs with sites within 600 bp upstream = 0.0287504 Motif number 3 CTTCGTAATTTTTAGGGCCTTGTTTGAAAGGGGTG 3 21 0 TTTAGGGTTT 0.946137 -42 CATCGAGAATTTTTGAATCTTCTTTAACATTTTTT 6 58 1 TTTTGACTTT 0.850621 -243 TTATTGTCTTTTTTGGTGTTAGTTTTATTCTTTTT 6 101 0 TTTTGGGTTT 0.961202 -200 AATGAATAACTTTAAGCATTTCTTACTCTTTAATG 6 183 1 TTTAAGCTTA 0.709055 -118 AATTTTGAGTTTTTAGGAGCAGTTTTT 7 3 0 TTTTAGGTTT 0.945238 -212 CGTCAAGCGATTTTAGGTTAATTTTGAGTTTTTAG 7 22 0 TTTTAGTTTT 0.86379 -193 ATGTAGTAGAATTAAGGCAGTGTTTTTGCGTCAAG 7 50 0 ATTAAGGTTT 0.896664 -165 ATTCTACTACATTTGAAATAATTTTTCTTATAAAC 7 73 1 ATTTGATTTT 0.632757 -142 TTTTTTCTCAATTTAGGTTTTGTTTATAAGAAAAA 7 94 0 ATTTAGGTTT 0.924461 -121 ATTATATTGTATTAGAGTAATCTTTTAGC 10 5 0 ATTAGACTTT 0.741108 -54 TTTCTTATGAATTTGGTCGATCTTTTTGATTAACA 11 84 1 ATTTGGCTTT 0.937975 -124 GGTTGCGGATTTTAAAGTTTTGTTAATCAAAAAGA 11 104 0 TTTAAAGTTA 0.430449 -104 TAAAAAGCTATTTAGGAACAACTTTTGCTTTATTT 11 147 1 TTTAGGCTTT 0.937975 -61 CAATAACCCTTTTAGAGTGTTTTTGAGTTATTAT 12 42 0 TTTTAGTTTT 0.86379 -24 AAATGGTTGGATTTGGAACGCCTTTTGCTTTTACG 13 40 1 ATTTGGCTTT 0.937975 -91 GACAAAGCCAATTAAACCATGTTTTTGCTAATCGT 14 44 0 ATTAAATTTT 0.459792 -58 AAAGCGCTATTTTTAGCGTTGGTTATTCTAAAAAA 15 118 0 TTTTAGGTTA 0.799701 -54 ****** **** Masking position 3 Map Score: 13.3025 Number of sites scoring better than the average of aligned sites = 1497 Number in coding regions = 1313 Number in noncoding regions = 184 Number of orfs with sites within 600 bp upstream = 131 Fraction of orfs with sites within 600 bp upstream = 0.0210408 Motif number 4 CGTTATTTTACACTTTAAAGGGCTTTC 1 8 0 CACTTTAAAG 0.73819 -114 ATCACCCCTTTCAAACAAGGCCCTAAAAAT 3 19 1 TCAAACAAGG 0.722702 -44 TAAATAAAATTCAATAAAGGAAAAATA 5 25 1 TCAATAAAGG 0.791177 -17 GTTATTCATTCCATTCAAAGCGGGTAAAAG 6 163 0 CCATTCAAAG 0.887416 -138 ACAGAAAACTCACATTAAAGAGTAAGAAAT 6 200 0 CACATTAAAG 0.694434 -101 AGAAAAAATTCAATTCAAAGGGGCTATTGT 7 121 1 CAATTCAAAG 0.905728 -94 TTACCACCTATAAAATAAGGATCGTTCA 7 197 1 TAAAATAAGG 0.732784 -18 GGTATTATACCCATTAAAAGCTTATTTCTT 8 52 0 CCATTAAAAG 0.854463 -56 TAATAGGGGCTAATTTAAAGATTAAGGTTT 10 36 1 TAATTTAAAG 0.86485 -23 TCAATCTATGCAAAATAAAGCAAAAGTTGT 11 164 0 CAAAATAAAG 0.774097 -44 GGTTATCCTTTAATTTAAAGAAATTCAATC 11 188 0 TAATTTAAAG 0.86485 -20 TATTAAATCTTAATTAAAGGGGTATTC 12 8 0 TAATTAAAGG 0.851399 -58 AAATACGCAACAATTAAAAGCGTAAAAGCA 13 65 0 CAATTAAAAG 0.877439 -66 TTCAAAATTATACAACAAAGCATTTAAATT 13 96 1 TACAACAAAG 0.510085 -35 CATTTGCTAGTAATTAAAGGAGTTTGAGAG 14 78 1 TAATTAAAGG 0.851399 -24 TGTTTTGGATTCAATTAAAGCGCTATTTTT 15 139 0 TCAATTAAAG 0.808855 -33 TAATTGAATCCAAAACAAGGAGTTTATTTT 15 152 1 CAAAACAAGG 0.804582 -20 TTTAATCAAATCATAAAAGGGTTTTT 16 55 1 TCATAAAAGG 0.706683 -16 ********** Masking position 7 Map Score: 14.7881 Number of sites scoring better than the average of aligned sites = 814 Number in coding regions = 680 Number in noncoding regions = 134 Number of orfs with sites within 600 bp upstream = 135 Fraction of orfs with sites within 600 bp upstream = 0.0216833 Motif number 5 CCCTTAAATCTCATTTTGATTAAAATTCGTTTGT 1 91 0 TATTTGTAAA 0.56664 -31 GGGACTTGTGTTTTTTGGTTGCACCAGTAAGGTG 2 49 1 TTTTTGGCAC 0.623264 -78 TGCAAGGGCTTTTTTTCATCTCATGCACCTTACT 2 74 0 TTTTTATCAT 0.705408 -53 CTCTCTTTTGTTTTTTAGGGTTATTATAGCGTTT 4 30 0 TTTTTGTTAT 0.918722 -40 ATTTATTGTCTTTTTTGGTGTTAGTTTTATTCTT 6 104 0 TTTTTGTTAG 0.725349 -197 TGCGTCAAGCGATTTTAGGTTAATTTTGAGTTTT 7 25 0 GTTTTGTAAT 0.752037 -190 ATTAAGGCAGTGTTTTTGCGTCAAGCGATTTTAG 7 41 0 TTTTTGTCAA 0.91972 -174 AAATAGGGGATTTTATGGTATTATACCCATTAAA 8 64 0 TTTATGTTAT 0.615521 -44 TAAAATCCCCTATTTTGGCTTAAAAAGGTTTAAA 8 83 1 TTTTTGTAAA 0.945289 -25 CCTATTATATTGTATTAGAGTAATCTTTTAGC 10 9 0 TTATTGTAAT 0.671732 -50 ATTTGGTCGATCTTTTTGATTAACAAAACTTTAA 11 94 1 TTTTTGTAAC 0.956977 -114 CCTTTTAGAGTGTTTTTGAGTTATTATTATATAT 12 35 0 TTTTTGTTAT 0.918722 -31 AGGAACGCTCTATTTTAGGATAATA 13 2 0 TTTTTGTAAT 0.964336 -129 ATAATTTTTATTTTTTCAGCTAACGATTAGCAAA 14 22 1 TTTTTATAAC 0.748162 -80 CGAGCGGTTTTCTTATGGTATAATAGCGGTTATT 15 85 1 TTTATGTAAT 0.792943 -87 TAGCGGTTATTTTTTTAGAATAACCAACGCTAAA 15 108 1 TTTTTGTAAC 0.956947 -64 ATAAACTCCTTGTTTTGGATTCAATTAAAGCGCT 15 145 0 TTTTTGTCAA 0.91972 -27 CTATTTTCAATGTTTTCAAGTAAAATATTAGCAT 16 20 1 TTTTTATAAA 0.697655 -51 * **** * **** Masking position 6 Map Score: 17.9702 Number of sites scoring better than the average of aligned sites = 383 Number in coding regions = 311 Number in noncoding regions = 72 Number of orfs with sites within 600 bp upstream = 75 Fraction of orfs with sites within 600 bp upstream = 0.0120463 Motif number 6 CTAAAATTCTTGCATTTCTTTTTGTTATAA 1 41 0 TGCATTTCTT 0.951552 -81 GAATTTAATGAGAATTTTTTTTGTTATTAT 2 19 1 AGAATTTTTT 0.878277 -108 GGGTTATTATAGCGTTTTTAATTGGGGATT 4 17 0 AGCGTTTTTA 0.679158 -53 AATCTTCTTTAACATTTTTTTTCTTTCCAA 6 73 1 AACATTTTTT 0.834308 -228 AATAACTTTAAGCATTTCTTACTCTTTAAT 6 187 1 AGCATTTCTT 0.974272 -114 AGTTTTTAGGAGCAGTTTTT 7 1 0 AGCAGTTTTT 0.848758 -214 CCCTTTGAATTGAATTTTTTCTCAATTTAG 7 113 0 TGAATTTTTT 0.789155 -102 GTTTAAAATTTACATTTTTTAAACGCTATT 7 149 1 TACATTTTTT 0.723149 -66 TTGCATAGATTGAATTTCTTTAAATTAAAG 11 181 1 TGAATTTCTT 0.812583 -27 CCTAAAATAGAGCGTTCCTTAAAAAATGGT 13 17 1 AGCGTTCCTT 0.784218 -114 TCCAAATCCAACCATTTTTTAAGGAACGCT 13 27 0 ACCATTTTTT 0.808906 -104 TTCTATGCAAAGCGTTTCTTGAAGCTTATG 15 23 1 AGCGTTTCTT 0.954895 -149 ********** Masking position 6 Map Score: 9.08909 Number of sites scoring better than the average of aligned sites = 866 Number in coding regions = 758 Number in noncoding regions = 108 Number of orfs with sites within 600 bp upstream = 83 Fraction of orfs with sites within 600 bp upstream = 0.0133312 Motif number 7 TTGCATTTCTTTTTGTTATAATGGCGTTAT 1 32 0 TTTTGTTATA 0.844423 -90 ATTAAAATTCGTTTGTTTTTAAAACGCTTA 1 77 0 GTTTGTTTTT 0.85207 -45 TGAGAATTTTTTTTGTTATTATGGGACTTG 2 27 1 TTTTGTTATT 0.944154 -100 ATTATGGGACTTGTGTTTTTTGGTTGCACC 2 44 1 TTGTGTTTTT 0.85207 -83 TCAGGCTCTCTTTTGTTTTTTAGGGTTATT 4 39 0 TTTTGTTTTT 0.973347 -31 CTTTATTGAATTTTATTTATTAAATTTTCT 5 14 0 TTTTATTTAT 0.681434 -28 TGATAGCTGATTTTGTTTTAAATTTGCTAT 6 235 1 TTTTGTTTTA 0.921411 -66 TCAATTTAGGTTTTGTTTATAAGAAAAATT 7 92 0 TTTTGTTTAT 0.944154 -123 GATTTTAAAGTTTTGTTAATCAAAAAGATC 11 102 0 TTTTGTTAAT 0.886705 -106 TAGGAACAACTTTTGCTTTATTTTGCATAG 11 159 1 TTTTGCTTTA 0.855466 -49 TTGGAACGCCTTTTGCTTTTACGCTTTTAA 13 52 1 TTTTGCTTTT 0.948549 -79 TTAAAATAATTTTTATTTTTTCAGCTAACG 14 17 1 TTTTATTTTT 0.822083 -85 TAAACCATGTTTTTGCTAATCGTTAGCTGA 14 37 0 TTTTGCTAAT 0.798011 -65 ********** Masking position 4 Map Score: 16.5613 Number of sites scoring better than the average of aligned sites = 439 Number in coding regions = 350 Number in noncoding regions = 89 Number of orfs with sites within 600 bp upstream = 74 Fraction of orfs with sites within 600 bp upstream = 0.0118856 Motif number 8 GTAAAATAACGCCATTATAACAAAAAGAAA 1 27 1 GCCATTATAA 0.878125 -95 AAGAATTTTAGCTATGATAAGCGTTTTAAA 1 60 1 GCTATGATAA 0.932137 -62 AATTAAAAACGCTATAATAACCCTAAAAAA 4 24 1 GCTATAATAA 0.959044 -46 AATTCTCGATGCAATTATGAATATAATATT 6 39 0 GCAATTATGA 0.826538 -262 AACAAAATCAGCTATCATGATCACAGAAAA 6 222 0 GCTATCATGA 0.930859 -79 TTTTAAATTTGCTATAATGTGAATTTAATG 6 250 1 GCTATAATGT 0.826538 -51 AACGCTATTAGATATAATAAGGGATAGTTA 7 170 1 GATATAATAA 0.723365 -45 AAAAATAACCGCTATTATACCATAAGAAAA 15 92 0 GCTATTATAC 0.878125 -80 ********** Masking position 4 Map Score: 1.27674 Number of sites scoring better than the average of aligned sites = 86 Number in coding regions = 60 Number in noncoding regions = 26 Number of orfs with sites within 600 bp upstream = 36 Fraction of orfs with sites within 600 bp upstream = 0.0057822 Motif number 9 AATGGCGTTATTTTACACTTTAAAGGGCTT 1 13 0 TTTTACACTT 0.652756 -109 GAATGAATAACTTTAAGCATTTCTTACTCT 6 182 1 CTTTAAGCAT 0.685295 -119 TTTAAGCATTTCTTACTCTTTAATGTGAGT 6 193 1 TCTTACTCTT 0.894516 -108 TTAATCTCCTAAGCTTATTCAGTAGA 9 25 0 TCCTAAGCTT 0.907051 -16 ACTAAACCTTAATCTTTAAATTAGCC 10 43 0 CCTTAATCTT 0.894516 -16 CGAGTTAGATTCTTAAGCTTGAGCGATAAC 11 13 1 TCTTAAGCTT 0.969433 -195 CGCCTTTTGCTTTTACGCTTTTAATTGTTG 13 58 1 TTTTACGCTT 0.923961 -73 ATGCATTGCGCCATAAGCTTCAAGAAACGC 15 34 0 CCATAAGCTT 0.865838 -138 ********** Masking position 5 Map Score: 0.948799 Number of sites scoring better than the average of aligned sites = 354 Number in coding regions = 301 Number in noncoding regions = 53 Number of orfs with sites within 600 bp upstream = 35 Fraction of orfs with sites within 600 bp upstream = 0.00562159 Motif number 10 TTTAATCAAAATGAGATTTAAGGGTTAAAG 1 101 1 ATGAGATTTA 0.708032 -21 ATAAATAGGAATTTAATGAGAATTTT 2 7 1 AGGAATTTAA 0.749228 -120 AGTTTTTAGGAGCAGTTTTT 7 1 0 AGCAGTTTTT 0.782334 -214 ATTGAACTTTAGGAGTTTTA 8 1 0 AGGAGTTTTA 0.972096 -107 AAGCCAAAATAGGGGATTTTATGGTATTAT 8 74 0 AGGGGATTTT 0.782394 -34 GAATAAGCTTAGGAGATTAA 9 31 1 AGGAGATTAA 0.943431 -10 TAGTAATTAAAGGAGTTTGAGAGTCTG 14 85 1 AGGAGTTTGA 0.940098 -17 ATCCAAAACAAGGAGTTTATTTT 15 159 1 AGGAGTTTAT 0.94343 -13 ********** Masking position 1 Map Score: 2.32418 Number of sites scoring better than the average of aligned sites = 211 Number in coding regions = 163 Number in noncoding regions = 48 Number of orfs with sites within 600 bp upstream = 46 Fraction of orfs with sites within 600 bp upstream = 0.00738837 Motif number 11 ACATTTTTTTTCTTTCCAAAAAGAATAAAA 6 84 1 TCTTTCCAAA 0.931215 -217 AGAAATTCAATCTATGCAAAATAAAGCAAA 11 170 0 TCTATGCAAA 0.96233 -38 TTGTTGCGTATTTTTTCAAAATTATACAAC 13 82 1 TTTTTTCAAA 0.853023 -49 TTAAACCATGTTTTTGCTAATCGTTAGCTG 14 38 0 TTTTTGCTAA 0.882064 -64 ATAAGCGGTTTCTATGCAAAGCGTTTCTTG 15 14 1 TCTATGCAAA 0.96233 -158 TGCATCGGTGTTTTTGCAAATACAAGCGAG 15 59 1 TTTTTGCAAA 0.967925 -113 ********** Masking position 5 Map Score: 2.80241 Number of sites scoring better than the average of aligned sites = 138 Number in coding regions = 122 Number in noncoding regions = 16 Number of orfs with sites within 600 bp upstream = 18 Fraction of orfs with sites within 600 bp upstream = 0.0028911 Motif number 12 ********** No masking Map Score: 3.94594e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 13 ********** No masking Map Score: 3.94594e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 14 ********** No masking Map Score: 3.94594e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0