AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00061_hpyl_reg_300.orf -o00061_hpyl_300.ace -a/home/amcguire/genomes/ORF_hpyl.txt -z/home/amcguire/genomes/hpyl.fna -0.39 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.38 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: HP0557 22 acetyl-coenzyme A carboxylase (accA) Input sequences: #1 HP0090 300 malonyl coenzyme A-acyl carrier protein transacylase (fabD) #2 HP0194 214 triosephosphate isomerase (tpi) #3 HP0197 64 S-adenosylmethionine synthetase 2 (metX) #4 HP0198 66 nucleoside diphosphate kinase (ndk) #5 HP0199 25 H. pylori predicted coding region HP0199 #6 HP0201 74 fatty acid/phospholipid synthesis protein (plsX) #7 HP0202 24 beta-ketoacyl-acyl carrier protein synthase III (fabH) #8 HP0371 123 biotin carboxyl carrier protein (fabE) #9 HP0558 300 beta ketoacyl-acyl carrier protein synthase II (fabF) #10 HP0561 41 3-ketoacyl-acyl carrier protein reductase (fabG) #11 HP0562 100 ribosomal protein S21 (rps21) #12 HP0563 247 H. pylori predicted coding region HP0563 #13 HP0688 143 H. pylori predicted coding region HP0688 #14 HP0690 281 acetyl coenzyme A acetyltransferase (thiolase) (fadA) #15 HP0950 77 acetyl-CoA carboxylase beta subunit (accD) Motif number 1 AAGTTTAAGGTTTATTTTAACTTATTTTTACTATAA 1 196 0 TTTTTATATT 0.899922 -105 ACTAAGGGCTTTTATATTACAATTTTAAATTATGGA 1 250 1 TTTTTCTTTT 0.952309 -51 GGTGTTATCCTTTAAGTTTTATTAATCCAT 1 281 0 TTATTATTTT 0.97159 -20 CGATTTTAGGTTAATTTTGAGTTTTTAGGAGCAGTT 2 14 0 TTATTATTTT 0.971586 -201 TTGAATTTTTTCTCAATTTAGGTTTTGTTTATAAGA 2 98 0 TCTTTATTTT 0.900729 -117 CAATAGCCCCTTTGAATTGAATTTTTTCTCAATTTA 2 114 0 TTTTTATTTT 0.974923 -101 GGGCTATTGTTTAAAATTTACATTTTTTAAACGCTA 2 141 1 TTATTATTTT 0.97159 -74 TTTTAAAATATTACCCTTAAAATATTTTT 4 4 0 TTATTATATT 0.887772 -63 ACTTGGAGCGTTTGTCTCCAGGTTTTAGTCAAAAAT 9 12 1 TTTTCATTTT 0.900729 -289 TCAATAATCCTTAATTTTTAAATTTTTCTTAAAGTC 10 13 0 TTATTATTTT 0.97159 -29 CCTAATTCCATTAAAATTTCCTTTTTTAGTTAGTGT 12 75 1 TTATTCTTTT 0.946136 -173 TCTAAAAATATTTTTCTTTAGATTTAATATAAAACG 12 152 0 TTTTTATTTA 0.757433 -96 GTTTGAATGCTCCGCATTAAAGTTTTTCTAATTTTT 13 14 1 TCCTTATTTT 0.795978 -130 TTTTTTAACATTCTTGTCTCGCTTTTATTATATAAC 13 103 0 TTCTCCTTTT 0.667095 -41 ACAGGTTGGATTTTATTTTAGGTTTTGTTTTGGATT 14 196 0 TTTTTATTTT 0.974923 -86 GTCTTTGCCTTTAAGTTGATTTATTATTCATAGTA 14 257 0 TTTTTATATT 0.899925 -25 GTTTTTCCTTAATTTTGCAGTTTTGTTAGGATTG 15 54 0 TTATTCTTTT 0.946136 -24 *** ** * **** Masking position 7 Map Score: 21.9837 Number of sites scoring better than the average of aligned sites = 499 Number in coding regions = 367 Number in noncoding regions = 132 Number of orfs with sites within 600 bp upstream = 100 Fraction of orfs with sites within 600 bp upstream = 0.0160617 Motif number 2 CGTTAATACATTCTAAACAAAAAGTTTTTAAA 1 44 1 TTTAACAAAA 0.981456 -257 CAAAAAGTTTTTAAAGGCAAAAAGGCTGGCGG 1 61 1 TTAAGCAAAA 0.747376 -240 CAAAGTAGAATTATAGTAAAAATAAGTTAAAA 1 186 1 TTTAGAAAAA 0.944002 -115 CTTTAATGGTTTCTAAACAAAACTAAGGGCTT 1 229 1 TTTAACAAAA 0.981456 -72 TAATTTAAAATTGTAATATAAAAGCCCTTAGT 1 250 0 TTTAAATAAA 0.835453 -51 ATAATTTTTCTTATAAACAAAACCTAAATTGA 2 90 1 TTTAACAAAA 0.980831 -125 AAAATGTAAATTTTAAACAATAGCCCCTTTGA 2 135 0 TTTAACAATA 0.830277 -80 AATTATGTTATTATAACAATAATTTTTTGCTA 8 33 1 TTTAAAATAA 0.72703 -91 CCATAAGCGTTTTTAGCAAAAAATTATTGTTA 8 46 0 TTTAGAAAAA 0.93053 -78 TGTCTCCAGGTTTTAGTCAAAAATTTGGCTTT 9 24 1 TTTAGCAAAA 0.77725 -277 TAGACTTTAAGAAAAATTTAAAAATT 10 5 1 CTTAAAAAAA 0.798807 -37 TCATCATTATTTTTGATAAAAAAGCTTATCTT 12 212 0 TTTGAAAAAA 0.584314 -36 TAGTGCTGACTTTTAATCTAAAAACGATATAA 13 52 0 TTTAACTAAA 0.876895 -92 AATAATATTTTTGTGAAAAAAATAAACGGATC 14 158 1 TTTGAAAAAA 0.886432 -124 ATTTTGTTTATTATAAGCAAAACTTGGATACA 15 24 1 TTTAACAAAA 0.980831 -54 ** *** ***** Masking position 12 Map Score: 20.1534 Number of sites scoring better than the average of aligned sites = 210 Number in coding regions = 156 Number in noncoding regions = 54 Number of orfs with sites within 600 bp upstream = 47 Fraction of orfs with sites within 600 bp upstream = 0.00754899 Motif number 3 CTAAACAAAAAGTTTTTAAAGGCAAAAAGGC 1 56 1 AGTTTTAAAG 0.847838 -245 TATAGTAAAAATAAGTTAAAATAAACCTTAA 1 197 1 ATAGTTAAAA 0.826387 -104 TTATTAATCCATAATTTAAAATTGTAATATA 1 262 0 ATATTTAAAA 0.95326 -39 CAAAGGGGCTATTGTTTAAAATTTACATTTT 2 136 1 ATTTTTAAAA 0.856504 -79 TATATCTAATAGCGTTTAAAAAATGTAAATT 2 155 0 AGCTTTAAAA 0.933453 -60 AAAAATATTTTAAGGGTAATATTTT 4 5 1 ATATTTAAGG 0.850487 -62 TTTAAGGGTAATATTTTAAAAAATTTTTGTA 4 19 1 ATATTTAAAA 0.95326 -48 ATCCGTTGCAATCCTTTAAAATACTTTCTAT 6 31 0 ATCTTTAAAA 0.924968 -44 GATTGCAACAAGCCTTTTAAGGACGC 6 59 1 AGCTTTTAAG 0.619757 -16 AAAGCCTTTAAAGTTTGTTAATA 8 3 1 AGCTTTAAAG 0.920051 -121 TGTTTGTGGCATATTTTAAAATAATATAAGG 8 92 1 ATATTTAAAA 0.95326 -32 TCAAGCTAAAAGAGGTTAAAATAGTCTTTTT 9 140 1 AGAGTTAAAA 0.84414 -161 ATATCCATGCAGACTTTAAAGAACAAAGCCT 9 181 1 AGATTTAAAG 0.950097 -120 TAGACTTTAAGAAAAATTTAAA 10 2 1 AGATTTAAGA 0.887502 -40 GACTTTAAGAAAAATTTAAAAATTAAGGATT 10 13 1 AAATTTAAAA 0.721558 -29 CCTCTTTTCCATAGCTTAAAATCATTGCTTA 11 70 0 ATACTTAAAA 0.721172 -31 CTAAAGAAAAATATTTTTAGATGTGCTAGAA 12 167 1 ATATTTTAGA 0.495455 -81 TTAGAAAGAAATTTTTTAAAGCGTTAGAGAA 14 47 1 ATTTTTAAAG 0.830422 -235 *** ******* Masking position 6 Map Score: 19.3812 Number of sites scoring better than the average of aligned sites = 937 Number in coding regions = 744 Number in noncoding regions = 193 Number of orfs with sites within 600 bp upstream = 133 Fraction of orfs with sites within 600 bp upstream = 0.021362 Motif number 4 TTAAAAACTTTTTGTTTAGAATGTATTAACGA 1 43 0 TTTGTAGAAT 0.894985 -258 TTTAACTTATTTTTACTATAATTCTACTTTGT 1 185 0 TTTTTATAAT 0.93098 -116 AGCCCTTAGTTTTGTTTAGAAACCATTAAAGT 1 228 0 TTTGTAGAAA 0.734864 -73 TAATTTAAAATTGTAATATAAAAGCCCTTAGT 1 250 0 TTGTTATAAA 0.743384 -51 ATTATTTCAAATGTAGTAGAATTAAGGCAGTG 2 63 0 ATGTTAGAAT 0.66208 -152 TTGAAATAATTTTTCTTATAAACAAAACCTAA 2 85 1 TTTTTATAAA 0.814479 -130 CAATAGCCCCTTTGAATTGAATTTTTTCTCAA 2 118 0 TTTGTTGAAT 0.366553 -97 TGATTGTCCTTATTAAAATAATCATTCGTATT 3 43 0 TATTAATAAT 0.377776 -22 TTTTAAAAAATTTTTGTATAATCAACAATTCA 4 32 1 TTTTTATAAT 0.930974 -35 AAGCTATCTTTAGTGATAGAAAGTATTTTAAA 6 16 1 TAGTTAGAAA 0.389454 -59 GCCTTTAAAGTTTGTTAATAATTATGTTATTA 8 14 1 TTTGAATAAT 0.635468 -110 AGCAAAAAATTATTGTTATAATAACATAATTA 8 32 0 TATTTATAAT 0.709169 -92 TTGTGGCATATTTTAAAATAATATAAGGAATA 8 95 1 TTTTAATAAT 0.770545 -29 AAAAAGGAAATTTTAATGGAATTAGGAAATAA 12 69 0 TTTTTGGAAT 0.622908 -179 TTTTCTTTAGATTTAATATAAAACGGCGTTTA 12 145 0 ATTTTATAAA 0.442352 -103 ATATTTTTAGATGTGCTAGAATACCCATTTGT 12 177 1 ATGTTAGAAT 0.662081 -71 ATAAGACTAATTGTTATATAATAAAAGCGAGA 13 91 1 TTGTTATAAT 0.898964 -53 AGTTTCAGGGTTTTAATAGAATT 14 2 0 TTTTTAGAAT 0.942603 -280 CAAAGCTATATTGTGCAATAATCATTGAACGA 14 122 1 TTGTAATAAT 0.689007 -160 GTATCCAAGTTTTGCTTATAATAAACAAAATT 15 23 0 TTTGTATAAT 0.87504 -55 AATTTTGCAGTTTTGTTAGGATTGTATCCAAG 15 46 0 TTTTTAGGAT 0.610993 -32 **** ****** Masking position 11 Map Score: 15.0448 Number of sites scoring better than the average of aligned sites = 684 Number in coding regions = 492 Number in noncoding regions = 192 Number of orfs with sites within 600 bp upstream = 189 Fraction of orfs with sites within 600 bp upstream = 0.0303566 Motif number 5 GGTGGGTGAGTTGGCTGAAACCACATCCCTGCTA 1 140 0 TGCTGAAACC 0.933674 -161 AAAAACTGCTCCTAAAAACTCAAAATTAACC 2 8 1 GCCTAAAACC 0.917804 -207 AACTCAAAATTAACCTAAAATCGCTTGACGCAAA 2 27 1 TCCTAAAACC 0.987104 -188 TAAAATCGCTTGACGCAAAAACACTGCCTTAATT 2 42 1 TCGCAAAACC 0.832069 -173 GCTTACTTAAAAACGCCCTTAAATC 5 10 0 TCTTAAAACC 0.834484 -16 ACAATAATTTTTTGCTAAAAACGCTTATGGCTAG 8 48 1 TGCTAAAACC 0.979801 -76 TATTTTAAAATATGCCACAAACACATAATCTTAC 8 81 0 TGCCACAACC 0.82431 -43 AAATTTGGCTTTAGCTAAAATCTAGTTTTATCCC 9 44 1 TGCTAAAACA 0.944989 -257 AATCTAGTTTTATCCCAACAGCACGAAAAACTCC 9 62 1 TCCCAACACC 0.936438 -239 AGCTTGAATATAGCCTAACAGCTATGCACTTATA 9 113 0 TCCTAACACA 0.887239 -188 GGATATTTCCTACCCCAAAAAGACTATTTTAACC 9 153 0 TCCCAAAAGC 0.908537 -148 TCGCTGTAGATGAGCTGAAACGCAATTTTTCA 12 9 0 TGCTGAAAGA 0.493886 -239 TGCTGACTTTTAATCTAAAAACGATATAACTAAA 13 47 0 TTCTAAAACA 0.726588 -97 AGGGTGTCAATCACCTAAAAGTGATACTATGAAT 14 233 1 TCCTAAAATA 0.660443 -49 * ******* * * Masking position 10 Map Score: 7.59579 Number of sites scoring better than the average of aligned sites = 1045 Number in coding regions = 953 Number in noncoding regions = 92 Number of orfs with sites within 600 bp upstream = 69 Fraction of orfs with sites within 600 bp upstream = 0.0110826 Motif number 6 AAAAAGTTTTTAAAGGCAAAAAGGCTGGCG 1 62 1 TAAAGGCAAA 0.940388 -239 AAAGTAGAATTATAGTAAAAATAAGTTAAA 1 187 1 TATAGTAAAA 0.858619 -114 TAATAAAACTTAAAGGATAACACC 1 287 1 TAAAGGATAA 0.716217 -14 AGGTTTTGTTTATAAGAAAAATTATTTCAA 2 85 0 TATAAGAAAA 0.84076 -130 CATAAGCGTTTTTAGCAAAAAATTATTGTT 8 47 0 TTTAGCAAAA 0.735115 -77 GTCTCCAGGTTTTAGTCAAAAATTTGGCTT 9 25 1 TTTAGTCAAA 0.714735 -276 AGATTTTAGCTAAAGCCAAATTTTTGACTA 9 37 0 TAAAGCCAAA 0.874978 -264 TTAGCTTGAATATAGCCTAACAGCTATGCA 9 119 0 TATAGCCTAA 0.579966 -182 TAGACTTTAAGAAAAATTTAAAAAT 10 6 1 TTTAAGAAAA 0.667979 -36 ATATTAAATCTAAAGAAAAATATTTTTAGA 12 158 1 TAAAGAAAAA 0.618888 -90 CTAATTGTTATATAATAAAAGCGAGACAAG 13 97 1 TATAATAAAA 0.659836 -47 AAACAAAACCTAAAATAAAATCCAACCTGT 14 202 1 TAAAATAAAA 0.630502 -80 TAAATCAACTTAAAGGCAAAGAC 14 269 1 TAAAGGCAAA 0.940388 -13 TTTTGTTTATTATAAGCAAAACTTGGATAC 15 25 1 TATAAGCAAA 0.851357 -53 AACTGCAAAATTAAGGAAAAAC 15 66 1 TTAAGGAAAA 0.847128 -12 ********** Masking position 4 Map Score: 10.8318 Number of sites scoring better than the average of aligned sites = 610 Number in coding regions = 512 Number in noncoding regions = 98 Number of orfs with sites within 600 bp upstream = 88 Fraction of orfs with sites within 600 bp upstream = 0.0141343 Motif number 7 AAAGTTTAAGGTTTATTTTAACTTATTTTT 1 203 0 GTTTATTTTA 0.837194 -98 GGTAACTATCCCTTATTATATCTAATAGCG 2 172 0 CCTTATTATA 0.89713 -43 TGAACGATCCTTATTTTATAGGTGGTAA 2 197 0 CCTTATTTTA 0.943867 -18 GCTTATTATAGCTTATTTCATTCT 3 5 0 GCTTATTTCA 0.956111 -60 TTCAAAATGGGCTTATTATAGCTTATTTCA 3 15 0 GCTTATTATA 0.923557 -50 TGATTGTCCTTATTAAAATAATCATTC 3 48 0 CCTTATTAAA 0.609811 -17 TGTGTTTGTGGCATATTTTAAAATAATATA 8 90 1 GCATATTTTA 0.729592 -34 ACGATCTATTCCTTATATTATTTTAAAATA 8 103 0 CCTTATATTA 0.66074 -21 CAATAGCTCCTCATTTCAAAACTTTAAT 9 283 0 CCTCATTTCA 0.844959 -18 ATAAAACGGCGTTTATTTCATGTTAGAATA 12 130 0 GTTTATTTCA 0.827855 -118 TACACGCTCCTTTCATTTTTTAACA 13 129 0 GCTCCTTTCA 0.564481 -15 AGCTAATTTTGTTTATTATAAGCAAAACTT 15 19 1 GTTTATTATA 0.727301 -59 ********** Masking position 10 Map Score: 6.95753 Number of sites scoring better than the average of aligned sites = 274 Number in coding regions = 215 Number in noncoding regions = 59 Number of orfs with sites within 600 bp upstream = 56 Fraction of orfs with sites within 600 bp upstream = 0.00899454 Motif number 8 TCGTAAAAGGAATGCTTAGAAACTATGGTGT 1 10 1 GATGCTAGAA 0.976145 -291 GGCGGACAGGGAGGGATTCGAACCCTCGGTAA 1 88 1 GAGGATCGAA 0.959135 -213 CGGTAACCTTGACGGCTACGCATCCTTAGCAG 1 114 1 GAGGCTCGCA 0.982931 -187 TGGGTTTGAATGCTCCGCATTAAAGTTTT 13 8 1 GATGCTCGCA 0.981599 -136 ACTAGGCAAAGACTGCTTAGAAAGAAATTTTT 14 31 1 GATGCTAGAA 0.976145 -251 AATAATCATTGAACGATAAGAATAATATTTTT 14 138 1 GACGATAGAA 0.89024 -144 ** **** **** Masking position 7 Map Score: 1.50392 Number of sites scoring better than the average of aligned sites = 26 Number in coding regions = 20 Number in noncoding regions = 6 Number of orfs with sites within 600 bp upstream = 7 Fraction of orfs with sites within 600 bp upstream = 0.00112432 Motif number 9 CCATTAAAGTTTAAGGTTTATTTTAACTTATT 1 206 0 TTAAGGTATT 0.953679 -95 GTGTTATCCTTTAAGTTTTATTAATCCATAAT 1 278 0 TTAAGTTATT 0.722603 -23 ATTTTGAGTTTTTAGGAGCAGTTTTT 2 5 0 TTTAGGGAGT 0.880678 -210 GTCAAGCGATTTTAGGTTAATTTTGAGTTTTT 2 24 0 TTTAGGTATT 0.946729 -191 TTTTTCTCAATTTAGGTTTTGTTTATAAGAAA 2 96 0 TTTAGGTTGT 0.885641 -119 AAAAATATTTTAAGGGTAATATTTTAAAAAA 4 10 1 TTAAGGTATA 0.743391 -57 GATTTAAGGGCGTTTTTAAGTAAGC 5 4 1 TTAAGGCTTT 0.805912 -22 GATGACTATGTTAAGGGGATTGA 7 12 1 TTAAGGGTTG 0.89099 -13 AATTTAAAAATTAAGGATTATTGAATA 10 25 1 TTAAGGTATT 0.953679 -17 AGATATGCACTTTAGGCTCATGTTTCTCTAAC 14 69 0 TTTAGGTATG 0.908554 -213 TGGATTTTATTTTAGGTTTTGTTTTGGATTGA 14 194 0 TTTAGGTTGT 0.885641 -88 TAGTATCACTTTTAGGTGATTGACACCCTAAC 14 230 0 TTTAGGGTTG 0.875859 -52 GTCTTTGCCTTTAAGTTGATTTATTATTCATA 14 260 0 TTAAGTGTTT 0.649101 -22 ****** * *** Masking position 4 Map Score: 9.50048 Number of sites scoring better than the average of aligned sites = 689 Number in coding regions = 582 Number in noncoding regions = 107 Number of orfs with sites within 600 bp upstream = 107 Fraction of orfs with sites within 600 bp upstream = 0.017186 Motif number 10 ACATTCTAAACAAAAAGTTTTTAAAGGCAA 1 51 1 CAAAAAGTTT 0.851322 -250 TTGTTTATAAGAAAAATTATTTCAAATGTA 2 80 0 GAAAAATTAT 0.821794 -135 GTTGATTATACAAAAATTTTTTAAAATATT 4 28 0 CAAAAATTTT 0.960644 -39 GTTATTATAACAATAATTTTTTGCTAAAAA 8 39 1 CAATAATTTT 0.775201 -85 AGGTTTTAGTCAAAAATTTGGCTTTAGCTA 9 31 1 CAAAAATTTG 0.846968 -270 TAGACTTTAAGAAAAATTTAAAAATTAAGG 10 11 1 GAAAAATTTA 0.723371 -31 TAAATCTAAAGAAAAATATTTTTAGATGTG 12 162 1 GAAAAATATT 0.882515 -86 GCTTTTTTATCAAAAATAATGATGACATAG 12 219 1 CAAAAATAAT 0.755191 -29 CTAAAAATTAGAAAAACTTTAATGCGGAGC 13 22 0 GAAAAACTTT 0.794914 -122 ATTTTTTTCACAAAAATATTATTCTTATCG 14 151 0 CAAAAATATT 0.917333 -131 ********** Masking position 5 Map Score: 4.68084 Number of sites scoring better than the average of aligned sites = 338 Number in coding regions = 276 Number in noncoding regions = 62 Number of orfs with sites within 600 bp upstream = 57 Fraction of orfs with sites within 600 bp upstream = 0.00915516 Motif number 11 TAAAAGCTATCTTTAGTGATAGAAAGTATT 6 13 1 CTTTAGTGAT 0.886979 -62 AACTCCTATCCTTTAGGTAGAGATATAAGT 9 90 1 CTTTAGGTAG 0.946472 -211 CAATGGAATGCTTTAGTTAGGAAGCTCCTT 9 226 1 CTTTAGTTAG 0.975155 -75 AAATTTCCTTTTTTAGTTAGTGTGTAGTAA 12 88 1 TTTTAGTTAG 0.945714 -160 TTTTTCTAATTTTTAGTTATATCGTTTTTA 13 36 1 TTTTAGTTAT 0.885478 -108 ********** Masking position 5 Map Score: 0.442621 Number of sites scoring better than the average of aligned sites = 37 Number in coding regions = 25 Number in noncoding regions = 12 Number of orfs with sites within 600 bp upstream = 9 Fraction of orfs with sites within 600 bp upstream = 0.00144555 Motif number 12 TCGTAAAAGGAATGCTTAGAAACTA 1 6 1 AAAGGAATGC 0.975932 -295 AAAGTATTTTAAAGGATTGCAACGGATTGC 6 35 1 AAAGGATTGC 0.98308 -40 AAAGGATTGCAACGGATTGCAACAAGCCTT 6 45 1 AACGGATTGC 0.988996 -30 GTTAGCATTCAATGGAATGCTTTAGTTAGG 9 217 1 AATGGAATGC 0.958325 -84 GAAAAAAATAAACGGATCGCCCTCAATCCA 14 172 1 AACGGATCGC 0.975896 -110 ********** Masking position 6 Map Score: 5.03126 Number of sites scoring better than the average of aligned sites = 15 Number in coding regions = 11 Number in noncoding regions = 4 Number of orfs with sites within 600 bp upstream = 3 Fraction of orfs with sites within 600 bp upstream = 0.00048185 Motif number 13 ********** No masking Map Score: -3.86292e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 14 ********** No masking Map Score: -3.86292e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 15 ********** No masking Map Score: -3.86292e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0