AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00130_hpyl_reg_100.orf -o00130_hpyl_100.ace -a/home/amcguire/genomes/ORF_hpyl.txt -z/home/amcguire/genomes/hpyl.fna -0.39 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.38 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 HP0012 286 DNA primase (dnaG) #2 HP0031 108 H. pylori predicted coding region HP0031 #3 HP0032 30 conserved hypothetical protein #4 HP0243 205 neutrophil activating protein (napA) (bacterioferritin) #5 HP0282 50 H. pylori predicted coding region HP0282 #6 HP0289 66 toxin-like outer membrane protein #7 HP0290 47 diaminopimelate decarboxylase (dap decarboxylase) (lysA) #8 HP1067 290 chemotaxis protein (cheY) #9 HP1260 101 NADH-ubiquinone oxidoreductase, NQO7 subunit (NQO7) #10 HP1282 222 anthranilate synthase component I (trpE) #11 HP1360 28 4-hydroxybenzoate octaprenyltransferase (ubiA) #12 HP1361 56 competence locus E (comE3) #13 HP1365 83 response regulator #14 HP1368 300 type IIS restriction enzyme M2 protein (mod) #15 HP1483 26 gerC2 protein (gerC2) #16 HP1490 103 hemolysin Motif number 1 AATAAGCGCTAAATTTCTATTTTATTTATCAAAAC 1 25 0 AAATTTTTAT 0.709653 -262 ATAAAATCTTAAAATAAGGTTTGTTAATAACGCCC 1 199 0 AAAAATTTTT 0.931861 -88 ACCTTATTTTAAGATTTTATTTATTGAGTATAATT 1 214 1 AAGATTTTTT 0.907713 -73 GTATAATACCAAAACTTCATTTAAGGTTGGTTCTT 2 84 1 AAAATTTTAG 0.895071 -25 GTTTTATAGTAAAACTCATTTTTAAGGGGGATAGT 4 19 0 AAAATTTTAA 0.887665 -187 TAATCTTTTTAAAATTTTGTTTTATAGTAAAACTC 4 37 0 AAAATTTTAT 0.971495 -169 AGAGTTAATAAAAAATTTTTTTGATCTTATTTTTG 4 109 0 AAAATTTTAT 0.971483 -97 CAAAAGTCCTTTTTTTAAAATTGTTT 4 190 0 AAAATTTTTT 0.964564 -16 ATCGCACTCAAAGAGTTATTTTATTACTTTTAAAC 8 62 1 AAGATTTTTT 0.907713 -229 TATTTGTAAAAAAATTCAGTTTGTTTGCTATGATA 8 100 0 AAAATTTTTT 0.968524 -191 TTCTCCTTTTAAGATTGCATTTAAATTAGGCTCTT 8 261 0 AAGATTTTAA 0.716041 -30 GAAATGTTAAAATAATTTTTATTTTTTCAGCTA 9 9 1 AAAAATTTTT 0.931861 -93 ACGATTAGCAAAAACATGGTTTAATTGGCTTTGTC 9 44 1 AAAAATTTAT 0.941778 -58 TGGTGGTTAGAAAATTCCTTTTTATGCTTTTACAA 10 50 0 AAAATTTTAT 0.971495 -173 TGGTTGTGCGAAAAGAAGCTTTCAATTTGGTGGTG 10 80 0 AAAAATTTAA 0.789289 -143 CTGCTCTCTTAAAAATGTGGTTGTGCGAAAAGAAG 10 97 0 AAAATGTTTG 0.613903 -126 TATTTCTTGTAAAATACGAGTTTATTTTTAGCGTA 10 189 1 AAAAAGTTAT 0.769609 -34 AAAAGTCATTTTATTAGGGATCAAA 11 1 1 AAAATTTTTT 0.968524 -28 ACCCCCATGCAAAAAAAGATTTTTTTATTAGAAGA 14 126 1 AAAAATTTTT 0.497952 -175 **** * *** ** Masking position 11 Map Score: 27.0678 Number of sites scoring better than the average of aligned sites = 504 Number in coding regions = 372 Number in noncoding regions = 132 Number of orfs with sites within 600 bp upstream = 97 Fraction of orfs with sites within 600 bp upstream = 0.0155798 Motif number 2 CAAGTTTCATTAGTTTAAAAATACAAGGATTAGA 1 160 1 TATAAAAATC 0.872334 -127 AAATTTTGTTTTATAGTAAAACTCATTTTTAAGG 4 27 0 TTTTAAAACC 0.961428 -179 TTTTGTCAAATATTGATAAACCCCATTCAATTTA 4 80 0 TATTAAACCC 0.788233 -126 TAGGCTTTTATTTTCATAAAAACCTTGATCGCTA 4 156 0 TTTTAAAAAC 0.917102 -50 CAAAAGTCCTTTTTTTAAAATTGTTTTAGGCTT 4 183 0 TTTTAAAATG 0.811992 -23 CTTTTTTGCTATAATGCTTCGTTCAAA 7 4 1 TTTTATAATC 0.825638 -44 TTACTTGTAAAATCCTTGTCTTTCT 8 2 1 TATTAAAATC 0.940661 -289 GCGTTCTTATTTGTAAAAAAATTCAGTTTGTTTG 8 108 0 TTTAAAAATC 0.962165 -183 TAAATTAGGCTCTTTTTAAACAGCCAAAGCGTCT 8 241 0 TCTTAAACAC 0.640711 -50 TGAGTGAGCGTTTTCAAAAATTCCAAGACATTCT 10 130 0 TTTAAAATTC 0.730187 -93 ATTTATCTATTTCTTGTAAAATACGAGTTTATTT 10 182 1 TTTTAAAATC 0.983315 -41 CTAAAAGCGGTTATAAAAAAACACTCCCTTAAAA 13 30 0 TTTAAAAACC 0.914909 -54 TATGAAAAGGTTTTCTAAAACTTCATAAAATTGC 14 12 1 TTTAAAACTC 0.933875 -289 GACTGACTCATTTTTTTAAAATACCCCCATTTCA 14 221 1 TTTTAAAATC 0.981045 -80 TACCCCCATTTCATTGTAAAATTCTTTCATGCAA 14 242 1 TCTTAAAATC 0.94473 -59 TATTTTTACCTTTTATTAAACTTCAATGGGTTTT 14 274 0 TTTTAAACTC 0.970362 -27 GCTTAATCTTTTATGTTAAAATTCTGAGATTTTA 16 41 1 TTTTAAAATC 0.983262 -63 ** * ****** * Masking position 8 Map Score: 22.8358 Number of sites scoring better than the average of aligned sites = 378 Number in coding regions = 289 Number in noncoding regions = 89 Number of orfs with sites within 600 bp upstream = 74 Fraction of orfs with sites within 600 bp upstream = 0.0118856 Motif number 3 AAGGATTAGAGAAAGGGGCGTTATTAACAAAC 1 184 1 GAAGGGCGTT 0.766372 -103 GTCCTTTTTCTAAGCGAGATTGTAGCGCTTTA 2 16 1 TAGGAGATTG 0.540546 -93 ATCCCCCTTAAAAATGAGTTTTACTATAAAAC 4 22 1 AAAGAGTTTT 0.662777 -184 AATATTAAATTGAATGGGGTTTATCAATATTT 4 75 1 TAAGGGGTTT 0.827413 -131 TTTAATCAAATGAGAGAGTTTTTGGCTACTAT 6 20 1 TAGGAGTTTT 0.95353 -47 TTTATCGCACTCAAAGAGTTATTTTATTACTT 8 59 1 TAAGAGTTAT 0.648583 -232 AATGGAGCGTTCAATGAGCGTTCTTATTTGTA 8 127 0 TAAGAGCGTT 0.96663 -164 AAAACATGGTTTAATTGGCTTTGTCATTTGCT 9 54 1 TAATGGCTTT 0.589579 -48 TGCTAGTAATTAAAGGAGTTTGAGAGTCTG 9 82 1 TAAGAGTTTG 0.893136 -20 AATACGCTAATGAGTGAGCGTTTTCAAAAATT 10 142 0 TAGGAGCGTT 0.962779 -81 ACAAAACTTTTCAGGGGGCGTTTGAACTTCTT 12 14 1 TAGGGGCGTT 0.958502 -43 GTGTCTTTTTTAAGGGAGTGTTTTTTTATAAC 13 23 1 TAGGAGTGTT 0.948248 -61 CCTATGTTTTTTAAGGAGCGTTATAATGAAAA 14 56 0 TAAGAGCGTT 0.96663 -245 TAGCGCTTAATGAGCGGGCTTTGTTATAATAC 14 90 0 TAGGGGCTTT 0.962778 -211 AGCGAGAGCGTTAAGGAGTTTGACTCATTGAA 14 174 1 TAAGAGTTTG 0.893136 -127 GGGTTTTGCATGAAAGAATTTTACAATGAAAT 14 249 0 TAAGAATTTT 0.532617 -52 TTATTAAACTTCAATGGGTTTTGCATGAAAGA 14 264 0 TAAGGGTTTT 0.95353 -37 * ** ******* Masking position 3 Map Score: 19.0253 Number of sites scoring better than the average of aligned sites = 963 Number in coding regions = 835 Number in noncoding regions = 128 Number of orfs with sites within 600 bp upstream = 98 Fraction of orfs with sites within 600 bp upstream = 0.0157404 Motif number 4 GTCAAGCCATAAAAACAAAGCTAATAATATA 1 100 1 AAAAAAAAGC 0.96843 -187 AGCGAGTTAAAACAAGAAAGCAAGATGAAGA 1 255 1 AACAAAAAGC 0.864818 -32 CTGAAAGCTCAAAGATAAAGCGCTACAATCT 2 32 0 AAAGAAAAGC 0.954755 -77 GGTTTTTATGAAAATAAAAGCCTAAAACAAT 4 166 1 AAAATAAAGC 0.711306 -40 CTTCCTAAAAAATGATTACGCCATTATATCC 5 29 0 AATGATACGC 0.799126 -22 GATGGTTTGAAAAAAGAAAGACAAGGATTTT 8 19 0 AAAAAAAAGA 0.74088 -272 TTAAAAGTAATAAAATAACTCTTTGAGTGCG 8 64 0 TAAAAAACTC 0.475303 -227 TTTTTTTACAAATAAGAACGCTCATTGAACG 8 121 1 AATAAAACGC 0.955572 -170 AACGCCTTATAATAATAAATCGTTCCAAATA 8 208 0 AATAAAAATC 0.774954 -83 ATTACTAGCAAATGACAAAGCCAATTAAACC 9 61 0 AATGAAAAGC 0.94308 -41 ATAAATGGGCAATAAATACGCTAATGAGTGA 10 157 0 AATAATACGC 0.852579 -66 TAAAATAAAGCGGTGTCTTTT 13 1 1 TAAAAAAAGC 0.876476 -83 AGCGGTTATAAAAAAACACTCCCTTAAAAAA 13 28 0 AAAAACACTC 0.532001 -56 GGAGCGTTATAATGAAAACGAACGAAGCGCA 14 43 0 AATGAAACGA 0.579657 -258 TAGGAAGTATTATAACAAAGCCCGCTCATTA 14 84 1 TATAAAAAGC 0.847823 -217 GCCTAACTTTAAAAATCAAGCCTTCAAAAAC 16 12 0 AAAAACAAGC 0.899033 -92 TTTTAACATAAAAGATTAAGCCTAACTTTAA 16 31 0 AAAGATAAGC 0.850164 -73 ***** ***** Masking position 8 Map Score: 15.611 Number of sites scoring better than the average of aligned sites = 1454 Number in coding regions = 1274 Number in noncoding regions = 180 Number of orfs with sites within 600 bp upstream = 129 Fraction of orfs with sites within 600 bp upstream = 0.0207196 Motif number 5 ATAAAATAGAAATTTAGCGCTTATTGTTAT 1 35 1 AATTTAGCGC 0.885225 -252 AAGCGACATAACTATAGCGCATTTTTAGGG 1 66 1 ACTATAGCGC 0.974099 -221 TCTAAGCGAGATTGTAGCGCTTTATCTTTG 2 24 1 ATTGTAGCGC 0.993271 -85 ACGATTTATTATTATAAGGCGTTAGAGACG 8 216 1 ATTATAAGGC 0.887735 -75 CCTCTAAAAACTTATAACGCAA 10 3 0 CTTATAACGC 0.926954 -220 GGGGGTATTGTAGCGCTAATTGCCTT 13 68 0 ATTGTAGCGC 0.993271 -16 GTTCGTTTTCATTATAACGCTCCTTAAAAA 14 51 1 ATTATAACGC 0.979499 -250 GCATGGGGGTATTGTAGCGCTTAATGAGCG 14 106 0 ATTGTAGCGC 0.993271 -195 ********** Masking position 6 Map Score: 11.023 Number of sites scoring better than the average of aligned sites = 102 Number in coding regions = 83 Number in noncoding regions = 19 Number of orfs with sites within 600 bp upstream = 23 Fraction of orfs with sites within 600 bp upstream = 0.00369419 Motif number 6 CATTTTTAAGGGGGATAGTTATCCAAA 4 8 0 GGGGATAGTT 0.914082 -198 CTTTCAATTTGGTGGTGGTTAGAAAATTCC 10 67 0 GGTGGTGGTT 0.927785 -156 AAACTTTTCAGGGGGCGTTTGAACTTCTTA 12 17 1 GGGGGCGTTT 0.968921 -40 GGTATTCTTTGGGGGTCGTAAGAAGTTCAA 12 35 0 GGGGGTCGTA 0.913705 -22 TCTTTTTTAAGGGAGTGTTTTTTTATAACC 13 26 1 GGGAGTGTTT 0.929115 -58 GGGGGTATTGTAGCGCTAAT 13 74 0 GGGGGTATTG 0.984941 -10 TTTTTTGCATGGGGGTATTGTAGCGCTTAA 14 112 0 GGGGGTATTG 0.984941 -189 ACAATGAAATGGGGGTATTTTAAAAAAATG 14 229 0 GGGGGTATTT 0.989817 -72 ********** Masking position 9 Map Score: 8.14341 Number of sites scoring better than the average of aligned sites = 301 Number in coding regions = 254 Number in noncoding regions = 47 Number of orfs with sites within 600 bp upstream = 29 Fraction of orfs with sites within 600 bp upstream = 0.00465789 Motif number 7 AATAAAATCTTAAAATAAGGTTTGTTAATA 1 205 0 TAAAATAAGG 0.527104 -82 TCAAGCGAGTTAAAACAAGAAAGCAAGATG 1 252 1 TAAAACAAGA 0.773943 -35 AATCTCGCTTAGAAAAAGGACACAAA 2 7 0 AGAAAAAGGA 0.799626 -102 ACTATCCCCCTTAAAAATGAGTTTTACTAT 4 19 1 TTAAAAATGA 0.672731 -187 AATATTTGACAAAAATAAGATCAAAAAAAT 4 100 1 AAAAATAAGA 0.880266 -106 AAACAATTTTAAAAAAAGGACTTTTG 4 190 1 AAAAAAAGGA 0.887704 -16 ACTTCCTAAAAAATGATTACGCCATT 5 35 0 TAAAAAATGA 0.864915 -16 TTGGATGGTTTGAAAAAAGAAAGACAAGGA 8 23 0 TGAAAAAAGA 0.909648 -268 GAATTTTTTTACAAATAAGAACGCTCATTG 8 118 1 ACAAATAAGA 0.580625 -173 TTGTAAAAGCATAAAAAGGAATTTTCTAAC 10 50 1 ATAAAAAGGA 0.717347 -173 CTATTTCTTGTAAAATACGAGTTTATTTTT 10 188 1 TAAAATACGA 0.638114 -35 AAACACTCCCTTAAAAAAGACACCGCTTTA 13 16 0 TTAAAAAAGA 0.864915 -68 AAAGCGGTTATAAAAAAACACTCCCTTAAA 13 31 0 TAAAAAAACA 0.594465 -53 TACCCCCATGCAAAAAAAGATTTTTTTATT 14 125 1 CAAAAAAAGA 0.806169 -176 GGGGTATTTTAAAAAAATGAGTCAGTCAAG 14 218 0 AAAAAAATGA 0.834088 -83 AATAAAAGGTAAAAATAAGA 14 291 1 AAAAATAAGA 0.880266 -10 AGACAAGCCATGAAAAAAGAAAAGTC 15 11 1 TGAAAAAAGA 0.909648 -16 ********** Masking position 5 Map Score: 11.7953 Number of sites scoring better than the average of aligned sites = 1169 Number in coding regions = 974 Number in noncoding regions = 195 Number of orfs with sites within 600 bp upstream = 138 Fraction of orfs with sites within 600 bp upstream = 0.0221651 Motif number 8 GGATAAGTCAAGCCATAAAAACAAAGCTAA 1 94 1 AGCCATAAAA 0.915477 -193 CAATAAATAAAATCTTAAAATAAGGTTTGT 1 210 0 AATCTTAAAA 0.643603 -77 AAGAACCAACCTTAAATGAAGTTTTGG 2 92 0 AACCTTAAAT 0.710234 -17 TTTTCATAAAAACCTTGATCGCTATCCTAC 4 150 0 AACCTTGATC 0.595933 -56 TGAAAATAAAAGCCTAAAACAATTTTAAAA 4 174 1 AGCCTAAAAC 0.929396 -32 CGTTTAAGCCTTAATCTTGGATATAA 5 7 1 AGCCTTAATC 0.9028 -44 CCTAGATAGTAGCCAAAAACTCTCTCATTT 6 27 0 AGCCAAAAAC 0.833785 -40 AGAAAAACCTAACCATAAAATTTGAACGAA 7 28 0 AACCATAAAA 0.855598 -20 ATTTAAATGCAATCTTAAAAGGAGAAGCAC 8 270 1 AATCTTAAAA 0.643603 -21 AGATTGTAAAAGCATAAAAAGGAATTTTCT 10 47 1 AGCATAAAAA 0.397341 -176 AGACAAGCCATGAAAAAAGAAAAGT 15 6 1 AGCCATGAAA 0.758681 -21 TTAAAAATCAAGCCTTCAAAAACC 16 5 0 AGCCTTCAAA 0.817613 -99 GATTAAGCCTAACTTTAAAAATCAAGCCTT 16 19 0 AACTTTAAAA 0.486247 -85 TTTTAAAGTTAGGCTTAATCTTTTATGTTA 16 29 1 AGGCTTAATC 0.475537 -75 AACTTTAAACCTAAAACCTAACGATAA 16 87 0 AACCTAAAAC 0.878064 -17 ********** Masking position 8 Map Score: 5.66987 Number of sites scoring better than the average of aligned sites = 1491 Number in coding regions = 1307 Number in noncoding regions = 184 Number of orfs with sites within 600 bp upstream = 159 Fraction of orfs with sites within 600 bp upstream = 0.0255381 Motif number 9 TATAGTTATGTCGCTTAATAACAATAAGCG 1 52 0 TCGCTTAATA 0.709402 -235 GCTTGACTTATCCCTAAAAATGCGCTATAG 1 77 0 TCCCTAAAAA 0.973638 -210 CGCTACAATCTCGCTTAGAAAAAGGACACA 2 13 0 TCGCTTAGAA 0.795499 -96 GATAACTATCCCCCTTAAAAATGAGTTTTA 4 15 1 CCCCTTAAAA 0.949108 -191 ACTTCCTAAAAAATGATTACGC 5 39 0 TTCCTAAAAA 0.676212 -12 GCTATGATAATCGTTTAAAAGTAATAAAAT 8 79 0 TCGTTTAAAA 0.816107 -212 CTGAAGTTATCCTCTAAAAACTTATAACGC 10 13 0 CCTCTAAAAA 0.840309 -210 GACATTCTGCTCTCTTAAAAATGTGGTTGT 10 108 0 TCTCTTAAAA 0.912462 -115 CAATTTCTTTACGCTAAAAATAAACTCGTA 10 203 0 ACGCTAAAAA 0.856626 -20 TGATTTGATCCCTAATAAAATGACTTTT 11 11 0 TCCCTAATAA 0.784296 -18 GTTCAAACGCCCCCTGAAAAGTTTTGTCTT 12 11 0 CCCCTGAAAA 0.83203 -46 AAAAAAACACTCCCTTAAAAAAGACACCGC 13 20 0 TCCCTTAAAA 0.973644 -64 ATTATAACGCTCCTTAAAAAACATAGGAAG 14 61 1 TCCTTAAAAA 0.859838 -240 CTTAACGCTCTCGCTTAAAAGGTAATCGTC 14 159 0 TCGCTTAAAA 0.963855 -142 ATTAAGCCTAACTTTAAAAATCAAGCCTTC 16 18 0 ACTTTAAAAA 0.279879 -86 ********** Masking position 7 Map Score: 16.5564 Number of sites scoring better than the average of aligned sites = 1178 Number in coding regions = 1022 Number in noncoding regions = 156 Number of orfs with sites within 600 bp upstream = 114 Fraction of orfs with sites within 600 bp upstream = 0.0183103 Motif number 10 TAGAAATTTAGCGCTTATTGTTATTAAGCG 1 41 1 GCGCTTATTG 0.99081 -246 ACAAATAAGAACGCTCATTGAACGCTCCAT 8 128 1 ACGCTCATTG 0.958 -163 GGGTATTGTAGCGCTAATTGCCTTTATACT 13 62 0 GCGCTAATTG 0.983908 -22 GGGTATTGTAGCGCTTAATGAGCGGGCTTT 14 100 0 GCGCTTAATG 0.977102 -201 ********** Masking position 5 Map Score: 1.61827 Number of sites scoring better than the average of aligned sites = 32 Number in coding regions = 27 Number in noncoding regions = 5 Number of orfs with sites within 600 bp upstream = 3 Fraction of orfs with sites within 600 bp upstream = 0.00048185 Motif number 11 TTTAGGGATAAGTCAAGCCATAAAAACAAA 1 89 1 AGTCAAGCCA 0.991875 -198 AGTATAATTCATTCAAGCGAGTTAAAACAA 1 240 1 ATTCAAGCGA 0.897461 -47 AAAATGAGTCAGTCAAGGCAATCTAAATTT 14 205 0 AGTCAAGGCA 0.972023 -96 AGACAAGCCATGAAAAAAGA 15 1 1 AGACAAGCCA 0.973808 -26 TAACTTTAAAAATCAAGCCTTCAAAAACC 16 10 0 AATCAAGCCT 0.90352 -94 ********** Masking position 5 Map Score: 1.00471 Number of sites scoring better than the average of aligned sites = 91 Number in coding regions = 85 Number in noncoding regions = 6 Number of orfs with sites within 600 bp upstream = 8 Fraction of orfs with sites within 600 bp upstream = 0.00128493 Motif number 12 AAATAGACTTAATAATCCTTATAGTTATAT 1 126 0 AATAATCCTT 0.761093 -161 TTTATTGAGTATAATTCATTCAAGCGAGTT 1 233 1 ATAATTCATT 0.631666 -54 TATAATACCAAAACTTCATTTAAGGTTGGT 2 85 1 AAACTTCATT 0.717614 -24 GTTTTATAGTAAAACTCATTTTTAAGGGGG 4 24 0 AAAACTCATT 0.864304 -182 CAAAAGTCCTTTTTTTAAAAT 4 195 0 AAAAGTCCTT 0.906061 -11 ACTTCCTAAAAAATGATTACGCCATTAT 5 33 0 AAAAATGATT 0.662249 -18 TTACTTGTAAAATCCTTGTCTTTCTTT 8 8 1 TAAAATCCTT 0.626374 -283 TATTTGTAAAAAAATTCAGTTTGTTTGCTA 8 105 0 AAAATTCAGT 0.717652 -186 CTTGACCGACAATAATCATTGGCTAAATGG 8 154 0 AATAATCATT 0.790633 -137 CTGAAAAAATAAAAATTATTTTAACATTTC 9 11 0 AAAAATTATT 0.542588 -91 TGGTGGTTAGAAAATTCCTTTTTATGCTTT 10 55 0 AAAATTCCTT 0.934782 -168 AAAAGTCATTTTATTAGGGA 11 1 1 AAAAGTCATT 0.921381 -28 CTTCTAATAAAAAAATCTTTTTTTGCATGG 14 130 0 AAAAATCTTT 0.844596 -171 ATTTCATTGTAAAATTCTTTCATGCAAAAC 14 249 1 AAAATTCTTT 0.828713 -52 ********** Masking position 6 Map Score: 7.6978 Number of sites scoring better than the average of aligned sites = 577 Number in coding regions = 492 Number in noncoding regions = 85 Number of orfs with sites within 600 bp upstream = 89 Fraction of orfs with sites within 600 bp upstream = 0.0142949 Motif number 13 ********** No masking Map Score: 1.98485e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 14 ********** No masking Map Score: 1.98485e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 15 ********** No masking Map Score: 1.98485e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0