AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00780_hpyl_reg_300.orf -o00780_hpyl_300.ace -a/home/amcguire/genomes/ORF_hpyl.txt -z/home/amcguire/genomes/hpyl.fna -0.39 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.38 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: HP0598 22 8-amino-7-oxononanoate synthase (bioF) Input sequences: #1 HP0030 108 H. pylori predicted coding region HP0030 #2 HP0170 74 H. pylori predicted coding region HP0170 #3 HP0171 60 peptide chain release factor RF-2 (prfB) #4 HP0174 300 H. pylori predicted coding region HP0174 #5 HP0599 71 hemolysin secretion protein precursor (hylB) #6 HP0600 163 multidrug resistance protein (spaB) #7 HP0654 296 conserved hypothetical protein #8 HP0655 82 protective surface antigen D15 #9 HP0976 128 adenosylmethionine-8-amino-7-oxononanoate aminotransferase (bioA) #10 HP1010 300 polyphosphate kinase (ppk) #11 HP1011 36 dihydroorotate dehydrogenase (pyrD) #12 HP1405 300 H. pylori predicted coding region HP1405 #13 HP1406 166 biotin synthetase (bioB) #14 HP1435 70 protease IV (PspA) Motif number 1 GCTACAATCTCGCTTAGAAAAAGGACACAA 1 88 1 CGCTTAGAAA 0.790612 -21 CTATAAAACGCTTTTTAAAACCAATTGGCA 2 45 1 CTTTTTAAAA 0.595355 -30 CACTTTTACCCGCTTTGAAT 4 1 0 CGCTTTGAAT 0.678787 -300 TAACATGCAATGCTAAAAAACCAAATATAA 4 206 0 TGCTAAAAAA 0.842812 -95 CGAGCGCTTAAAATGTTTGGTAAT 5 5 1 CGCTTAAAAT 0.943544 -67 TGTAACTCCTTGTTATAAAAAACCCAAAGG 6 14 1 TGTTATAAAA 0.640791 -150 TAAAACAAAGCCCTTTAAAATTTCAAACTT 6 78 0 CCCTTTAAAA 0.912739 -86 TAAAGGGCTTTGTTTTAAAAGCAAAATTTA 6 91 1 TGTTTTAAAA 0.874797 -73 ATTTTCATGCTCCTTTAAATTTTGCTTTTA 6 106 0 TCCTTTAAAT 0.850893 -58 AGTATGAAAATTTTTAAAAATTTACAAAAA 7 81 1 TTTTTAAAAA 0.417523 -216 ACAATGTTTATCTTTAAAACGAAAGGGCAA 7 270 1 TCTTTAAAAC 0.591212 -27 TTCTTAAAAACGCTAAAAATTA 8 3 0 CGCTAAAAAT 0.806371 -80 TAACTAATCATTCTTAAAAACGCTAAAAAT 8 13 0 TTCTTAAAAA 0.776219 -70 GAACTCTAATCCCTTTAAAAAATCAAAAAT 9 13 1 CCCTTTAAAA 0.912739 -116 AAACGCTAAAAAAATTTTAAGCG 10 4 1 CGCTAAAAAA 0.864882 -297 CCTAAAAGATCGCTTAAAATTTTTTTAGCG 10 14 0 CGCTTAAAAT 0.943544 -287 GCTTAGTTGTTGTTTAAAAACTCTTTTTTG 10 79 0 TGTTTAAAAA 0.878851 -222 CGACCATGACTTTTTAAAAAAGCTTCAATG 10 212 1 TTTTTAAAAA 0.417523 -89 TAAATCATCATGTTTAAAAATCAGTTTGTT 10 270 0 TGTTTAAAAA 0.878851 -31 TAGAAATCCTTTAAATCATCATGTTT 10 285 0 TCCTTTAAAT 0.850893 -16 GCTTATTTTTTGTTATAAATTAGAGGGGGT 12 41 1 TGTTATAAAT 0.539667 -260 GAAATTGATGCGCTTTAAATCTAATATTAC 12 69 0 CGCTTTAAAT 0.934968 -232 AGGTTCATATTGCTTTAAACTTGCTATGGA 12 171 1 TGCTTTAAAC 0.8708 -130 TGGAATAAAGCCCTTAAAATCAAAAAGCGC 13 86 1 CCCTTAAAAT 0.887778 -81 ATCATTCCTTTGTTTTAAAAAAGTTGGTTT 13 146 0 TGTTTTAAAA 0.874797 -21 GATTTAATCCTTAAAACATTTGAAGTA 14 8 1 TCCTTAAAAC 0.78762 -63 ********** Masking position 4 Map Score: 30.1871 Number of sites scoring better than the average of aligned sites = 2584 Number in coding regions = 2220 Number in noncoding regions = 364 Number of orfs with sites within 600 bp upstream = 268 Fraction of orfs with sites within 600 bp upstream = 0.0430453 Motif number 2 TAAATGAAGTTTTGGTATTATACCAAATAA 1 23 1 TTTGGTATTA 0.911342 -86 CAGCGGGTCATTAGGGTTTATTTGGTATAA 1 40 0 TTAGGGTTTA 0.828723 -69 TTCCTTGCCAATTGGTTTTAAAAAGCGTTT 2 50 0 ATTGGTTTTA 0.840316 -25 TATTGTCTTTTTTGGTGTTAGTTTTATTCT 4 57 1 TTTGGTGTTA 0.8224 -244 ATTCTTTATATTTGGTTTTTTAGCATTGCA 4 201 1 TTTGGTTTTT 0.943207 -100 ATTTGAATCTTTTGGGATTATACCCAAAAT 5 33 0 TTTGGGATTA 0.759025 -39 CAAGGATGCCTTTGGGTTTTTTATAACAAG 6 22 0 TTTGGGTTTT 0.835771 -142 TCCTTTAAATTTTGCTTTTAAAACAAAGCC 6 96 0 TTTGCTTTTA 0.886927 -68 GCAATAAGATTTGGTATAAATTTTCTTTA 6 145 0 TTTGGTATAA 0.846827 -19 TCTCCTTTGTGTTGGTTTAAGTTGTCCCAT 7 15 1 GTTGGTTTAA 0.814056 -282 TTGATAAAGCTTAGATTTTATCATAAAAAT 7 135 1 TTAGATTTTA 0.863934 -162 TGTAGCATTTTTAGATTTAAGAATGCTTTT 7 243 0 TTAGATTTAA 0.773213 -54 TAAATTGCCCTTTCGTTTTAAAGATAAACA 7 274 0 TTTCGTTTTA 0.705966 -23 GATTTCCTTAATAGATTTTAGCTTGAGTGT 8 60 0 ATAGATTTTA 0.396661 -23 ATTTCATATTTTTGATTTTTTAAAGGGATT 9 20 0 TTTGATTTTT 0.869765 -109 AATAAGGTTATTTGATTTTACTATAAGGTT 9 62 0 TTTGATTTTA 0.953352 -67 TTTAATAACCTTTGGTTAAAATAAGGTTAT 9 81 0 TTTGGTTAAA 0.585889 -48 AAGCGATCTTTTAGGGTTAAATGAAGTTTT 10 29 1 TTAGGGTTAA 0.7224 -272 GGGGGTAATATTAGATTTAAAGCGCATCAA 12 65 1 TTAGATTTAA 0.773213 -236 GGTTGTTTGGTTTGGTTTTGAGTAAGTTTT 12 228 0 TTTGGTTTTG 0.83634 -73 TTTGATTTATTTTGATTTTTGAGTTATAAT 13 48 0 TTTGATTTTT 0.869765 -119 CATTAAAAAATTTGATTTATTTTGATTTTT 13 58 0 TTTGATTTAT 0.782224 -109 AGAAGCGCTTTTTGATTTTAAGGGCTTTAT 13 90 0 TTTGATTTTA 0.953352 -77 CTTCTTTTTCTTTGCTATAATCAGTCTCAA 13 115 1 TTTGCTATAA 0.460404 -52 TTTTAAAAAAGTTGGTTTTTTGAGACTGAT 13 134 0 GTTGGTTTTT 0.726769 -33 AATCATTCCTTTGTTTTAAAAAAGTTGGT 13 148 0 TTTGTTTTAA 0.607332 -19 ********** Masking position 2 Map Score: 25.3612 Number of sites scoring better than the average of aligned sites = 1282 Number in coding regions = 1068 Number in noncoding regions = 214 Number of orfs with sites within 600 bp upstream = 167 Fraction of orfs with sites within 600 bp upstream = 0.026823 Motif number 3 AAGATAAAGCGCTACAATCTCGCTTAGAAA 1 78 1 GCTACAATCT 0.934122 -31 GTGCGCTAAAATGACAGCCGATAA 2 5 1 GCTAAAATGA 0.942323 -70 TTTTAACAATGCTATAATGATAAGTTCAAA 3 17 1 GCTATAATGA 0.965169 -44 ATGAAAATGGGCTATAATAAAGAAAATTTA 6 128 1 GCTATAATAA 0.945582 -36 TATCATTTATGCTATAATTATGGGACAACT 7 34 0 GCTATAATTA 0.810848 -263 ATCTAAAAATGCTACAATGTTTATCTTTAA 7 257 1 GCTACAATGT 0.946132 -40 AGAATGATTAGTTATAATAACGCTACTAAC 8 29 1 GTTATAATAA 0.74305 -54 CAACACTCAAGCTAAAATCTATTAAGGAAA 8 58 1 GCTAAAATCT 0.899393 -25 ATAACCTTTGGTTAAAATAAGGTTATTTGA 9 77 0 GTTAAAATAA 0.630316 -52 TTAAAAACTCTCTATAATAAGGATAATTTT 9 108 0 TCTATAATAA 0.650977 -21 GCAAACTCGCGCTACAATCTCCCTTTTTGA 10 107 1 GCTACAATCT 0.934122 -194 TTTTAAAAAAGCTTCAATGATTATCATTTC 10 223 1 GCTTCAATGA 0.703467 -78 ATCTAAAATGTCTTTAGGGGC 12 2 1 TCTAAAATGT 0.543085 -299 TGATTTTTGAGTTATAATATGCTTACATTC 13 36 0 GTTATAATAT 0.662158 -131 CTTTTTCTTTGCTATAATCAGTCTCAAAAA 13 118 1 GCTATAATCA 0.957211 -49 ********** Masking position 6 Map Score: 15.9188 Number of sites scoring better than the average of aligned sites = 389 Number in coding regions = 290 Number in noncoding regions = 99 Number of orfs with sites within 600 bp upstream = 124 Fraction of orfs with sites within 600 bp upstream = 0.0199165 Motif number 4 GTAATAATATTTATTGTCTTTTTTGGTGTTAG 4 46 1 TTTTTCTTTT 0.829587 -255 TTTTGAATCTTCTTTAACATTTTTTTTCTTTC 4 92 0 TCTTACATTT 0.957419 -209 ATTTTCATGCTCCTTTAAATTTTGCTTTTAAA 6 104 0 TCTTAAATTT 0.662668 -60 ATTTACTTTTTCATTATCATTTATGCTATAAT 7 46 0 TCTTTCATTT 0.980259 -251 TTTCATACTCTCATTTACTTTTTCATTATCAT 7 58 0 TCTTACTTTT 0.957419 -239 TAGCCGGTGTTCTTTCTCATTTTTGTAAATTT 7 98 0 TCTTTCATTT 0.980259 -199 AAAGCTTCAATGATTATCATTTCATTATATAA 10 230 1 TGTTTCATTT 0.878273 -71 TTAAATCCTTATCTTTTATGATTTGAA 11 20 0 TCTTTCTTTT 0.980259 -17 TTTTGCCCTATCATTGTCTTTTAACCCAGTGA 12 279 0 TCTTTCTTTT 0.980259 -22 AAAAAGCGCTTCTTTTTCTTTGCTATAATCAG 13 107 1 TCTTTCTTTG 0.91194 -60 ** ** ****** Masking position 5 Map Score: 12.2083 Number of sites scoring better than the average of aligned sites = 167 Number in coding regions = 131 Number in noncoding regions = 36 Number of orfs with sites within 600 bp upstream = 40 Fraction of orfs with sites within 600 bp upstream = 0.00642467 Motif number 5 GTATAATACCAAAACTTCATTTAAGGTTGGTT 1 14 0 AAAACTTTTT 0.968891 -95 TGGTTACTATAAAACGCTTTTTAAAACCAATT 2 39 1 AAAACGCTTT 0.560707 -36 CTCATATTGATAAGCTTACTATGTAAGATTAA 4 273 1 TAAGCTTTAT 0.64125 -28 AGATTTGGTATAAATTTTCTTTATTATAGCCC 6 136 0 TAAATTTTTT 0.736627 -28 ATTTTATCATAAAAATCTATTTAATGAGAATT 7 149 1 AAAAATCTTT 0.795143 -148 TAAAATCAAATAACCTTATTTTAACCAAAGGT 9 72 1 TAACCTTTTT 0.749939 -57 GTTAAAAACTCTCTATAATAAGGATA 9 113 0 AAAACTCTAT 0.874071 -16 AAAGATCGCTTAAAATTTTTTTAGCGTTT 10 8 0 TAAAATTTTT 0.800275 -293 TTTTTTGAATAAAACTTCATTTAACCCTAAAA 10 37 0 AAAACTTTTT 0.968891 -264 TCTTTTTTGTAAAACTTCATTTTTTGAATAAA 10 56 0 AAAACTTTTT 0.968891 -245 TTGTTGTTTAAAAACTCTTTTTTGTAAAACTT 10 71 0 AAAACTCTTT 0.939804 -230 CATCATGTTTAAAAATCAGTTTGTTTGGTGTG 10 263 0 AAAAATCTTT 0.794163 -38 GGGCAGTGATTAAGCTTATTTTTTGTTATAAA 12 28 1 TAAGCTTTTT 0.846596 -273 CATATTGCTTTAAACTTGCTATGGACGATTAG 12 176 1 TAAACTTTAT 0.877427 -125 ATTCCATTAAAAAATTTGATTTATTTTGATTT 13 60 0 AAAATTTTTT 0.797515 -107 TTTGTTTTAAAAAAGTTGGTTTTTTGAGACTG 13 136 0 AAAAGTTTTT 0.766742 -31 CAGCTTTTCCTAAACTTAATATTTGACCATAA 14 48 0 TAAACTTTAT 0.877428 -23 ******* *** Masking position 3 Map Score: 16.7025 Number of sites scoring better than the average of aligned sites = 425 Number in coding regions = 319 Number in noncoding regions = 106 Number of orfs with sites within 600 bp upstream = 69 Fraction of orfs with sites within 600 bp upstream = 0.0110826 Motif number 6 ATCGGCTGTCATTTTAGCGCAC 2 2 0 ATTTTACGCA 0.854602 -73 GAGGCGAACACTTTTACCCGCTTTGAAT 4 8 0 CTTTTACCGC 0.882195 -293 TTAGCATTGCATGTTATCCCATATTAAATAA 4 220 1 ATGTTACCCA 0.962552 -81 AATTTTCTTTATTATAGCCCATTTTCATGCT 6 125 0 ATTATACCCA 0.864627 -39 AAAATATCCCCTTTTAACCCCCTATTGATGC 7 199 0 CTTTTACCCC 0.980967 -98 AAATAACCTTATTTTAACCAAAGGTTATTAA 9 79 1 ATTTTACCAA 0.816512 -50 TTTAAATCTAATATTACCCCCTCTAATTTAT 12 55 0 ATATTACCCC 0.922067 -246 ATTTCAAATCCTATTATCCCAATAATAAAAA 12 94 1 CTATTACCCA 0.963636 -207 CTATCATTGTCTTTTAACCCAGTGAAATAAG 12 273 0 CTTTTACCCA 0.986373 -28 AGGTGGGCTTCGGTTAGCCCATTGAATGTAA 13 13 1 CGGTTACCCA 0.89527 -154 ****** **** Masking position 6 Map Score: 7.43509 Number of sites scoring better than the average of aligned sites = 250 Number in coding regions = 225 Number in noncoding regions = 25 Number of orfs with sites within 600 bp upstream = 18 Fraction of orfs with sites within 600 bp upstream = 0.0028911 Motif number 7 AAGAACCAACCTTAAATGAAGTTTTG 1 5 1 ACACCTTAAA 0.919828 -104 TTATCATTATAGCATTGTTAAAAGCCATT 3 8 0 ACATGTTAAA 0.927789 -53 TGGAAAGAAAAAAAATGTTAAAGAAGATTCAA 4 90 1 AAATGTTAAA 0.57968 -211 TACTCTATTAATCAATCTCATATTGATAAGCT 4 257 1 ACATCTCATA 0.742355 -44 TGAGAGTATGAAAATTTTTAAAAATTTACAAA 7 77 1 AAATTTTAAA 0.738319 -220 ATATGTAAAAAGCATTCTTAAATCTAAAAATG 7 236 1 ACATCTTAAA 0.973202 -61 TAAACATTGTAGCATTTTTAGATTTAAGAATG 7 248 0 ACATTTTAGA 0.805668 -49 ATTATAACTAATCATTCTTAAAAACGCTAAAA 8 15 0 ACATCTTAAA 0.973202 -68 TTCAGGTTTAAACAACCTTATAGTAAAATCAA 9 49 1 ACACCTTATA 0.682839 -80 TAATCATTGAAGCTTTTTTAAAAAGTCATGGT 10 214 0 ACTTTTTAAA 0.820206 -87 CCTTTAAATCATCATGTTTAAAAATCAGTTTG 10 272 0 ACAGTTTAAA 0.892523 -29 TTTAAAGCGCATCAATTTCAAATCCTATTATC 12 80 1 ACATTTCAAA 0.917448 -221 AATCGTCCATAGCAAGTTTAAAGCAATATGAA 12 174 0 ACAGTTTAAA 0.892523 -127 CTTTGCTATAATCAGTCTCAAAAAACCAACTT 13 124 1 ACATCTCAAA 0.938855 -43 TCAAAAAACCAACTTTTTTAAAACAAAGGAAT 13 141 1 ACTTTTTAAA 0.820206 -26 * ** ******* Masking position 10 Map Score: 14.4282 Number of sites scoring better than the average of aligned sites = 322 Number in coding regions = 272 Number in noncoding regions = 50 Number of orfs with sites within 600 bp upstream = 49 Fraction of orfs with sites within 600 bp upstream = 0.00787022 Motif number 8 AAGCGAGATTGTAGCGCTTTATCTTTGAGC 1 73 0 GTAGCGCTTT 0.93874 -36 TTGGTTTTAAAAAGCGTTTTATAGTAACCA 2 39 0 AAAGCGTTTT 0.772012 -36 GATAAACATTGTAGCATTTTTAGATTTAAG 7 252 0 GTAGCATTTT 0.882266 -45 TAATTTTTAGCGTTTTTAAGAATGAT 8 7 1 TTAGCGTTTT 0.881286 -76 AGTGTTGTTAGTAGCGTTATTATAACTAAT 8 35 0 GTAGCGTTAT 0.910901 -48 GATAATCATTGAAGCTTTTTTAAAAAGTCA 10 218 0 GAAGCTTTTT 0.882159 -83 ATTTGAAATTGATGCGCTTTAAATCTAATA 12 73 0 GATGCGCTTT 0.901205 -228 CAAAGAAAAAGAAGCGCTTTTTGATTTTAA 13 99 0 GAAGCGCTTT 0.809233 -68 ********** Masking position 8 Map Score: 6.50577 Number of sites scoring better than the average of aligned sites = 270 Number in coding regions = 252 Number in noncoding regions = 18 Number of orfs with sites within 600 bp upstream = 19 Fraction of orfs with sites within 600 bp upstream = 0.00305172 Motif number 9 TTGGTGTTAGTTTTATTCTTTTTGGAAAGA 4 68 1 TTTTATTCTT 0.952696 -233 TCTTTAACATTTTTTTTCTTTCCAAAAAGA 4 84 0 TTTTTTTCTT 0.848449 -217 ATCGAGAATTTTTGAATCTTCTTTAACATT 4 103 0 TTTGAATCTT 0.858465 -198 TTACCAGGGTTATTATTCTTTATATTTGGT 4 187 1 TATTATTCTT 0.739165 -114 CTTATTTAAATTTGAATCTTTTGGGATTAT 5 42 0 TTTGAATCTT 0.858465 -30 ATTTCATATTTTTGATTTTTTAAAGGGATT 9 20 0 TTTGATTTTT 0.856162 -109 AATCCTTATCTTTTATGATTTGAACGATAA 11 14 0 TTTTATGATT 0.621466 -23 AATAATGCATTTTTATTATTGGGATAATAG 12 104 0 TTTTATTATT 0.887291 -197 AGATAATGGATTTTTTTATTGTTGATAAAT 12 131 0 TTTTTTTATT 0.686359 -170 TTTGATTTATTTTGATTTTTGAGTTATAAT 13 48 0 TTTGATTTTT 0.856162 -119 ********** Masking position 3 Map Score: 4.10615 Number of sites scoring better than the average of aligned sites = 720 Number in coding regions = 586 Number in noncoding regions = 134 Number of orfs with sites within 600 bp upstream = 108 Fraction of orfs with sites within 600 bp upstream = 0.0173466 Motif number 10 CAATCTCGCTTAGAAAAAGGACACAAA 1 92 1 TAAAAAAGGA 0.967521 -17 TAAAACTAACACCAAAAAAGACAATAAATAT 4 52 0 ACAAAAAAGA 0.636275 -249 TTTTTTTCTTTCCAAAAAGAATAAAACTAAC 4 73 0 TCAAAAAGAA 0.793416 -228 TTGGGTTTTTTATAACAAGGAGTTACAACA 6 10 0 TAAACAAGGA 0.848711 -154 GAAAATGGGCTATAATAAAGAAAATTTATAC 6 130 1 TAAATAAAGA 0.653165 -34 TTTAAAAATTTACAAAAATGAGAAAGAACAC 7 93 1 TAAAAAATGA 0.893676 -204 GAGAATTAGGTAAAAAAAGGGGTTGGCATCA 7 174 1 TAAAAAAGGG 0.836437 -123 CATTCTTAAATCTAAAAATGCTACAATGTTT 7 248 1 TCAAAAATGC 0.595195 -49 AAAAACTCTCTATAATAAGGATAATTTTAAT 9 105 0 TAAATAAGGA 0.869696 -24 GAAGTTTTATTCAAAAAATGAAGTTTTACAA 10 51 1 TCAAAAATGA 0.89545 -250 AATGAAGTTTTACAAAAAAGAGTTTTTAAAC 10 67 1 TAAAAAAAGA 0.893676 -234 TACTCCGCAATCAAAAAGGGAGATTGTAGCG 10 116 0 TCAAAAGGGA 0.82722 -185 GATTATAGCAAAGAAAAAGAAGCGCTTTTTG 13 106 0 AAAAAAAGAA 0.434965 -61 ** ******** Masking position 5 Map Score: 5.89941 Number of sites scoring better than the average of aligned sites = 638 Number in coding regions = 495 Number in noncoding regions = 143 Number of orfs with sites within 600 bp upstream = 135 Fraction of orfs with sites within 600 bp upstream = 0.0216833 Motif number 11 TTGGTATTATACCAAATAAACCCTAATGACC 1 34 1 ACCAAAAAAC 0.97558 -75 AACCCTGGTAACCAAGGAAAGAGAATGCATA 4 167 0 ACCAAGAAAG 0.837876 -134 AACATGCAATGCTAAAAAACCAAATATAAAG 4 204 0 GCTAAAAACC 0.80196 -97 TTATAGTAAAATCAAATAACCTTATTTTAAC 9 66 1 ATCAAAAACC 0.862214 -63 TTAAACAACAACTAAGCAAACTCGCGCTACA 10 92 1 ACTAAGAAAC 0.880002 -209 ATATAATCACACCAAACAAACTGATTTTTAA 10 256 1 ACCAAAAAAC 0.97558 -45 TCAAAACCAAACCAAACAACCGCCCACGCAT 12 237 1 ACCAAAAACC 0.979693 -64 ****** **** Masking position 5 Map Score: 1.90634 Number of sites scoring better than the average of aligned sites = 118 Number in coding regions = 103 Number in noncoding regions = 15 Number of orfs with sites within 600 bp upstream = 10 Fraction of orfs with sites within 600 bp upstream = 0.00160617 Motif number 12 ********** No masking Map Score: -3.55028e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 13 ********** No masking Map Score: -3.55028e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 14 ********** No masking Map Score: -3.55028e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0