AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00010_mgen_reg_100.orf -o00010_mgen_100.ace -a/home/amcguire/genomes/ORF_mgen.txt -z/home/amcguire/genomes/mgen.fna -g0.32 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.32 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: MG022 29 DNA-directed RNA polymerase, subunit delta (rpoE) MG274 27 pyruvate dehydrogenase component E1, subunit alpha (pdhA) MG301 30 glyceraldehyde-3-phosphate dehydrogenase (gap) Input sequences: #1 MG018 188 ATP-dependent RNA helicase, putative #2 MG019 41 heat shock protein (dnaJ) #3 MG062 300 PTS system, fructose-specific IIABC component (fruA) #4 MG069 300 PTS system, glucose-specific IIABC component (ptsG) #5 MG109 59 serine/threonine protein kinase, putative #6 MG211 189 conserved hypothetical protein #7 MG272 249 dihydrolipoamide acetyltransferase (pdhC) #8 MG275 82 NADH oxidase (nox) #9 MG277 42 conserved hypothetical protein #10 MG304 176 ABC transporter, ATP binding protein #11 MG407 66 enolase (eno) #12 MG431 59 triosephosphate isomerase (tpiA) #13 MG432 85 conserved hypothetical protein #14 MG460 172 L-lactate dehydrogenase (ldh) Motif number 1 TTTTATTCAATTTTGTTGTTAAATGCTGTTAACA 3 103 0 TTTTGTTAAT 0.899629 -198 TCAGGGTCTGTTTTTTATTTTTATTCAATTTTGT 3 121 0 TTTTTTTTAT 0.953908 -180 TTTTAGTTGTTTTTGGAATTTTATTAGTTCTAAT 4 37 1 TTTTGTTTAT 0.927615 -264 AGGATTTTTATTTTGAGCTTTAAAAATTTCACTT 4 77 1 TTTTGTTAAA 0.706751 -224 TTGACCTTTCTTTTGTTCTTTAAGTGAAATTTTT 4 98 0 TTTTGTTAAG 0.895203 -203 ATTAGTTTTATTTTTGCTTGCAATAGTTTTTTTA 4 209 1 TTTTTTGAAT 0.931118 -92 TTGCAATAGTTTTTTTAATGCTAGGAATAGGTGG 4 226 1 TTTTTTGTAG 0.948498 -75 TAAATCATCATTTTTAACTTCAATCTTAGGCA 6 9 0 TTTTTTTAAT 0.935384 -181 CCTTTTAAACTTTTTTAAAGCTAGCTCTAAATCA 6 36 0 TTTTTAGTAG 0.876923 -154 CTTCCTGCGCTTTTTCTGTGCTATCTTTTGTTTT 6 141 0 TTTTTTGTAT 0.950801 -49 CACTTTTTTAAAATATAGTTACCTAGCT 7 5 1 TTTTTATTAG 0.884127 -245 CCTAGCTTTATTTTTTAGAGCTAGGTACCTCATT 7 32 1 TTTTTAGTAG 0.876923 -218 AGTTACTGGCTTTTTAGTTGTTAGACAAAAATTT 7 157 0 TTTTTTGTAG 0.948498 -93 AAACTGGCTTTTTTTATTTGTTATAGATCACTAC 7 191 1 TTTTTTGTAT 0.950801 -59 GTGCTGCTCTTTTTTATTTGGAATATGTTCTATA 10 19 0 TTTTTTGAAT 0.931118 -158 AACAGCTGCTTTTTTGTTTTTTATCTACCAAAAA 10 53 1 TTTTTTTTAT 0.953908 -124 CTCTGACTTATTTTTAAAATTTATAAATAAGCTT 10 99 1 TTTTTATTAT 0.888971 -78 AAAACTGAGGTTTTTAACTTGTAGCAAACTAAGC 10 129 0 TTTTTTTTAG 0.951743 -48 TGTTTTGGTGTTTTGGGTATTTAAAACTGAGGTT 10 151 0 TTTTGATTAA 0.571388 -26 ATTAACAATATTTTTCTATTTAAT 11 53 1 TTTTTTTAAT 0.935384 -14 ATTTTAATAATTTTGGTAATTAATAATTTCTTAT 13 48 0 TTTTGATAAT 0.776182 -38 AGGCAACAGTTTTTTGACTTCAAATATCCTTATT 14 83 1 TTTTTTTAAA 0.795602 -90 ***** ** *** Masking position 4 Map Score: 34.2296 Number of sites scoring better than the average of aligned sites = 283 Number in coding regions = 242 Number in noncoding regions = 41 Number of orfs with sites within 600 bp upstream = 32 Fraction of orfs with sites within 600 bp upstream = 0.00513974 Motif number 2 CCATTAAAGATAAGAATCAAATTGCGCTTTTTA 1 125 1 TAAGATAATT 0.954717 -64 TAAGACAGAATTTACATTAGACT 3 1 1 TAAGAAAATT 0.921642 -300 CAGTTTGTTCTAAAAAACAATTAGCTACAGCTT 3 42 0 TAAAAAAATA 0.837986 -259 ATAACTCACTTAAAAATGAAGTTCCTAGAGGGA 4 154 1 TAAAATAATT 0.9556 -147 TTGTTGAAAATAAGTATCAAATTGAAAAGCTTT 5 23 1 TAAGTTAATT 0.900933 -37 TGCCTAAGATTGAAGTTAAAAATGATG 6 5 1 TAAGATAATT 0.954717 -185 CACTTTTTTAAAATATAGTTACCTAGCTTTA 7 9 1 TAAAAAAGTA 0.780804 -241 CTGTAAAAAGTAAGACAAAATTTTTGTCTAACA 7 140 1 TAAGAAAATT 0.921642 -110 TCACTACTATTAAATTTAAACTTTAAGTACTAT 7 218 1 TAAATTAATT 0.902759 -32 TTCGATCTTTTAAAATTAAGCTTTTG 8 4 0 TAAAATAGTT 0.93673 -79 AAATTTTATATAAATATTAAGTA 9 1 0 TAAATTAATA 0.800085 -42 AATATTTATATAAAATTTAAGTTATTAAAAATA 9 16 1 TAAAATAATT 0.9556 -27 ATTTTAAAAATAAGTCAGAGCTAAAAATCTGTT 10 86 0 TAAGTAAGTA 0.600852 -91 TTTGGGTATTTAAAACTGAGGTTTTTAACTTGT 10 141 0 TAAAATAGTT 0.93673 -36 ATCTTATTAGTAATATTAAGCTTAGTGCAATA 13 10 0 TAATATAGTT 0.652917 -76 AATAAGATAGTAAATAAGAAATTATTAATTACC 13 35 1 TAAATAAATT 0.838175 -51 TGAACCAAAATAAAATTGAAGTATATCTCTAGA 14 141 1 TAAAATAATA 0.902759 -32 ***** * ** ** Masking position 9 Map Score: 19.9291 Number of sites scoring better than the average of aligned sites = 218 Number in coding regions = 175 Number in noncoding regions = 43 Number of orfs with sites within 600 bp upstream = 32 Fraction of orfs with sites within 600 bp upstream = 0.00513974 Motif number 3 ACATTAGACTAATTTTAAAAGCTGTAGCTA 3 24 1 AATTTTAAAA 0.881789 -277 GTTTGTTGTTAAATTTATTATAAATATGCA 3 264 1 AAATTTATTA 0.943576 -37 TTGTTTTTGGAATTTTATTAGTTCTAATTG 4 43 1 AATTTTATTA 0.955162 -258 TCTTTAAGTGAAATTTTTAAAGCTCAAAAT 4 86 0 AAATTTTTAA 0.72976 -215 AAAACTACTAAATTTTATTAACCAAACAGC 4 278 0 AATTTTATTA 0.955162 -23 CTTAAAGTTTAAATTTAATAGTAGTGATCT 7 215 0 AAATTTAATA 0.854144 -35 CAAAAGCTTAATTTTAAAAGATCGAATCA 8 10 1 AATTTTAAAA 0.881789 -73 TAGCTGCAGTAATTTTTTAAGCTATTTAAG 8 57 0 AATTTTTTAA 0.774736 -26 TAATAACTTAAATTTTATATAAATATTAAG 9 13 0 AATTTTATAT 0.774731 -30 CTTATTTTTAAAATTTATAAATAAGCTTAG 10 105 1 AAATTTATAA 0.943593 -72 AATTAATAGAAATCTTAAAACATATAATAA 11 19 1 AATCTTAAAA 0.66695 -48 AACATATAATAATTTTATTAACAATATTTT 11 37 1 AATTTTATTA 0.955162 -30 TGGTTTTTGAAAACTTATAAAATCTTTCAT 12 40 1 AAACTTATAA 0.81788 -20 ATTAATTACCAAAATTATTAAAATAATTGT 13 58 1 AAAATTATTA 0.622135 -28 AGACAAAGCAAAATTTATTAAAGTGAACCA 14 118 1 AAATTTATTA 0.943576 -55 GATATACTTCAATTTTATTTTGGTTCACTT 14 138 0 AATTTTATTT 0.774472 -35 ********** Masking position 5 Map Score: 18.4967 Number of sites scoring better than the average of aligned sites = 51 Number in coding regions = 37 Number in noncoding regions = 14 Number of orfs with sites within 600 bp upstream = 17 Fraction of orfs with sites within 600 bp upstream = 0.00273049 Motif number 4 TTAAATAATCTATTTGAAATAATTCTTCATAAAA 1 73 0 TATTAATATT 0.925017 -116 ATCCTTAGAGTGTTAATTATAATTCTTGCT 2 7 0 TGTTTATATT 0.553026 -35 TTGTTAAATTTATTATAAATATGCAACTAATTAG 3 269 1 TATTAATAGC 0.817695 -32 GTTTTATTTTTGCTTGCAATAGTTTTTTTAATGC 4 213 1 TGCTAATATT 0.852633 -88 GTTTTTTTAATGCTAGGAATAGGTGGACTTGTTT 4 234 1 TGCTAATAGT 0.924543 -67 TAGGTGATATTGTTGAAAATAAGTATCAAATTGA 5 14 1 TGTTAATAGT 0.963801 -46 TAGGTAACTATATTTTAAAAAAGTG 7 2 0 TATTAAAAGT 0.720001 -248 AAACTTTAAGTACTATCAATACGAT 7 235 1 TACTAATAGA 0.710592 -15 AAATTTAAGTTATTAAAAATAGTTA 9 28 1 TATTAATATT 0.924978 -15 TGCTCTTTTTTATTTGGAATATGTTCTATATGAA 10 15 0 TATTAATAGT 0.963138 -162 TATTTATAAATTTTAAAAATAAGTCAGAGCTAAA 10 94 0 TTTTAATAGT 0.804647 -83 ATAATAATTTTATTAACAATATTTTTCTATTTAA 11 42 1 TATTAATATT 0.925027 -25 CTAAGCTTAATATTACTAATAAGATAGTAAATAA 13 18 1 TATTAATAGA 0.840479 -68 TGTTACAAATAATTATAATATCGC 14 1 1 TGTTAATATT 0.926317 -172 **** **** ** Masking position 9 Map Score: 13.2589 Number of sites scoring better than the average of aligned sites = 62 Number in coding regions = 50 Number in noncoding regions = 12 Number of orfs with sites within 600 bp upstream = 13 Fraction of orfs with sites within 600 bp upstream = 0.00208802 Motif number 5 CTCAAAAAACTAATACATCAAACT 1 4 1 AAAAACTAAT 0.878675 -185 GCTTGTTCATAAAAAAGTAAACGGTTGAAGT 1 32 0 AAAAAGTAAA 0.781874 -157 CACTCTAAGGATGCAAGTGATAA 2 29 1 ATCAAGTGAT 0.822469 -13 CAGAATTTACATTAGACTAATTTTAAAAGCT 3 16 1 ATAGACTAAT 0.552888 -285 TGTTTTTTAGAACAAACTGAATCAAAGAATT 3 56 1 AAAAACTGAA 0.835271 -245 ACAAAATTGAATAAAAATAAAAAACAGACCC 3 121 1 ATAAAATAAA 0.579946 -180 TATTATAAATATGCAACTAATTAGCGCTTTA 3 279 1 ATCAACTAAT 0.878309 -22 AAAATTCCAAAAACAACTAAAAGAGCATATG 4 28 0 AACAACTAAA 0.758985 -273 GCAAGCAAAAATAAAACTAATTTGTTGTTTC 4 199 0 ATAAACTAAT 0.924151 -102 CCTAGCATTAAAAAAACTATTGCAAGCAAAA 4 220 0 AAAAACTATT 0.491496 -81 GAAAATAAGTATCAAATTGAAAAGCTTTTAA 5 28 1 ATAAATTGAA 0.567006 -32 CATTTCATAAATTAAAGTGATGGAAGACAAC 7 62 1 ATAAAGTGAT 0.886285 -188 ATTTCTATTAATTCAAGTAAT 11 1 0 ATCAAGTAAT 0.829387 -66 CCATTTTCTTTTCCAACTAATTGATCATTAA 12 12 0 TTCAACTAAT 0.340525 -48 TACCAAAATTATTAAAATAATTGTTCTTAAC 13 64 1 ATAAAATAAT 0.652333 -22 TTGTAATCCAAAAAAAGTAAATTCAGGCAAC 14 59 1 AAAAAGTAAA 0.781874 -114 ATTTGAAGTCAAAAAACTGTTGCCTGAATTT 14 77 0 AAAAACTGTT 0.479463 -96 AGCAAAATTTATTAAAGTGAACCAAAATAAA 14 124 1 ATAAAGTGAA 0.851873 -49 GTGAACCAAAATAAAATTGAAGTATATCTCT 14 140 1 ATAAATTGAA 0.568137 -33 ** ******** Masking position 8 Map Score: 10.8645 Number of sites scoring better than the average of aligned sites = 442 Number in coding regions = 383 Number in noncoding regions = 59 Number of orfs with sites within 600 bp upstream = 32 Fraction of orfs with sites within 600 bp upstream = 0.00513974 Motif number 6 TTGTAGTGCTTGTTCATAAAAAAGTAAACG 1 40 0 TGTTCATAAA 0.855064 -149 TTGAAATAATTCTTCATAAAACCTTTGTAG 1 64 0 TCTTCATAAA 0.788967 -125 TGTTTTCAAATCTTCTTAAATAATCTATTT 1 92 0 TCTTCTTAAA 0.952206 -97 TGATTCAGTTTGTTCTAAAAAACAATTAGC 3 50 0 TGTTCTAAAA 0.901961 -251 TGTTGTTAAATGCTGTTAACAATGAAAGAC 3 94 0 TGCTGTTAAC 0.906546 -207 TATTCAATTTTGTTGTTAAATGCTGTTAAC 3 104 0 TGTTGTTAAA 0.941467 -197 TAGCAGGGTGTCCTCTTAACCACTTGAGTA 3 226 1 TCCTCTTAAC 0.923169 -75 GCTCCCAGTTTGTTGTTAAATTTATTATAA 3 257 1 TGTTGTTAAA 0.941467 -44 ACCTTTCTTTTGTTCTTTAAGTGAAATTTT 4 99 0 TGTTCTTTAA 0.75576 -202 TCCAGTGATATCCTTTTAAACTTTTTTAAA 6 51 0 TCCTTTTAAA 0.758021 -139 TCTTTTGTTTTTCTCTTAACCGCATCCCTT 6 122 0 TTCTCTTAAC 0.650209 -68 GTGCAACAGCTGCTGTAAAAAGTAAGACAA 7 128 1 TGCTGTAAAA 0.81066 -122 AGTGATTCGATCTTTTAAAATTAAGCTTTT 8 12 0 TCTTTTAAAA 0.50194 -71 TTAAAATAATTGTTCTTAACT 13 75 1 TGTTCTTAAC 0.954227 -11 ********** Masking position 9 Map Score: 10.7759 Number of sites scoring better than the average of aligned sites = 208 Number in coding regions = 187 Number in noncoding regions = 21 Number of orfs with sites within 600 bp upstream = 14 Fraction of orfs with sites within 600 bp upstream = 0.00224863 Motif number 7 TGAAATAATTCTTCATAAAACCTTTGTAGTG 1 62 0 CTTCATAAAC 0.518566 -127 TGAAGAATTATTTCAAATAGATTATTTAAGA 1 78 1 TTTCAAATAA 0.569791 -111 TCAAAAACAGTTTTAAAAAGCGCAATTTGAT 1 140 0 TTTTAAAAAC 0.931426 -49 ATTCAGTTTGTTCTAAAAAACAATTAGCTAC 3 47 0 TTCTAAAAAC 0.617876 -254 CCGCTTCCGCCATTAAATATCCAACAGACCA 3 155 0 CATTAAATAC 0.651433 -146 TTATTTTGAGCTTTAAAAATTTCACTTAAAG 4 84 1 CTTTAAAAAT 0.583133 -217 AATGATTTGACTTCCAATAACTCACTTAAAA 4 138 1 CTTCCAATAC 0.655813 -163 ATTGAAAAGCTTTTAAATAGGGGTGGG 5 43 1 TTTTAAATAG 0.812669 -17 TTAGAGCTAGCTTTAAAAAAGTTTAAAAGGA 6 40 1 CTTTAAAAAG 0.84693 -150 GGTAACTATATTTTAAAAAAGTG 7 3 0 TTTTAAAAAG 0.794513 -247 CACAAATTATCCTTAAATAGCTTAAAAAATT 8 46 1 CCTTAAATAC 0.734742 -37 TAACTATTTTTAATAACTTAAATTTTA 9 26 0 TTTTTAATAC 0.565607 -17 TATTTATAAATTTTAAAAATAAGTCAGAGCT 10 97 0 TTTTAAAAAA 0.63215 -80 AAAACCTCAGTTTTAAATACCCAAAACACCA 10 149 1 TTTTAAATAC 0.938338 -28 TTTTATAAGTTTTCAAAAACCATTTTCTTTT 12 31 0 TTTCAAAAAC 0.903322 -29 TATCGCTCATCTTTAAATAACAGTGTTGTTT 14 29 1 CTTTAAATAC 0.95622 -144 AGTTTTTTGACTTCAAATATCCTTATTTAGA 14 90 1 CTTCAAATAC 0.937596 -83 ********* * Masking position 7 Map Score: 10.8535 Number of sites scoring better than the average of aligned sites = 259 Number in coding regions = 237 Number in noncoding regions = 22 Number of orfs with sites within 600 bp upstream = 19 Fraction of orfs with sites within 600 bp upstream = 0.00305172 Motif number 8 CTGTAGCTAATTGTTTTTTAGAACAAACTG 3 45 1 TTGTTTTTTA 0.791291 -256 GAATTTGAAATTGTCTTTCATTGTTAACAG 3 82 1 TTGTCTTTCA 0.97061 -219 TACTAATGATTTGACTTCCAATAACTCACT 4 134 1 TTGACTTCCA 0.843808 -167 AATTTGTTGTTTCTTTTTCATCAACTCCCT 4 182 0 TTCTTTTTCA 0.854324 -119 ATAGGTGGACTTGTTTCCCTTCCTAAGCTG 4 252 1 TTGTTTCCCT 0.724661 -49 GTGCTATCTTTTGTTTTTCTCTTAACCGCA 6 128 0 TTGTTTTTCT 0.907428 -62 GCATTTCTTGTTGTCTTCCATCACTTTAAT 7 72 0 TTGTCTTCCA 0.977021 -178 GACAAAAATTTTGTCTTACTTTTTACAGCA 7 138 0 TTGTCTTACT 0.851249 -112 GACAAAATTTTTGTCTAACAACTAAAAAGC 7 153 1 TTGTCTAACA 0.669048 -97 AGCTGCTTTTTTGTTTTTTATCTACCAAAA 10 56 1 TTGTTTTTTA 0.791291 -121 AAAAACCATTTTCTTTTCCAACTAATTGAT 12 18 0 TTCTTTTCCA 0.883045 -42 ********** Masking position 6 Map Score: 5.54797 Number of sites scoring better than the average of aligned sites = 173 Number in coding regions = 156 Number in noncoding regions = 17 Number of orfs with sites within 600 bp upstream = 10 Fraction of orfs with sites within 600 bp upstream = 0.00160617 Motif number 9 TAGTAATTTGACCTTTCTTTTGTTCTTTAA 4 109 0 ACCTTTCTTT 0.747735 -192 GTCCACCTATTCCTAGCATTAAAAAAACTA 4 232 0 TCCTAGCATT 0.854396 -69 GATGATTTAGAGCTAGCTTTAAAAAAGTTT 6 34 1 AGCTAGCTTT 0.964857 -156 GCTTTTTCTGTGCTATCTTTTGTTTTTCTC 6 137 0 TGCTATCTTT 0.796521 -53 AAATATAGTTACCTAGCTTTATTTTTTAGA 7 21 1 ACCTAGCTTT 0.981319 -229 GAAATGAGGTACCTAGCTCTAAAAAATAAA 7 38 0 ACCTAGCTCT 0.933119 -212 CCAGTTTAGTTACTGGCTTTTTAGTTGTTA 7 168 0 TACTGGCTTT 0.881591 -82 CCAGTAACTAAACTGGCTTTTTTTATTTGT 7 182 1 AACTGGCTTT 0.922744 -68 ********** Masking position 4 Map Score: 3.24179 Number of sites scoring better than the average of aligned sites = 57 Number in coding regions = 52 Number in noncoding regions = 5 Number of orfs with sites within 600 bp upstream = 3 Fraction of orfs with sites within 600 bp upstream = 0.00048185 Motif number 10 CAACTAAAAGAGCATATGTTGTTTGCATGCAA 4 14 0 AGCATTTTGT 0.966417 -287 TGCTAGGAATAGGTGGACTTGTTTCCCTTCCT 4 244 1 AGGTGATTGT 0.895445 -57 AGATAGGTGATATTGTTGAAAATAAG 5 5 1 AGGTGTTTGT 0.951659 -55 TTGCATTGGCAGCATTTCTTGTTGTCTTCCAT 7 81 0 AGCATTTTGT 0.966387 -169 TACTTTTTACAGCAGCTGTTGCACTTAGCGCA 7 120 0 AGCAGTTTGC 0.948159 -130 AAGCTATTTAAGGATAATTTGTGCAGTAGTGA 8 37 0 AGGATATTGT 0.905048 -46 AAAACAAAAAAGCAGCTGTTGTGCTGCTCTTT 10 41 0 AGCAGTTTGT 0.983455 -136 ***** * **** Masking position 1 Map Score: 3.23727 Number of sites scoring better than the average of aligned sites = 38 Number in coding regions = 32 Number in noncoding regions = 6 Number of orfs with sites within 600 bp upstream = 6 Fraction of orfs with sites within 600 bp upstream = 0.000963701 Motif number 11 ACGGTTGAAGTTTGATGTATTAGTTTTTTG 1 13 0 TTTGATGTAT 0.669878 -176 TAAAACTGTTTTTGATGATTACAAAACCAT 1 156 1 TTTGATGATT 0.669878 -33 TTTATTCAATTTTGTTGTTAAATGCTGTTA 3 106 0 TTTGTTGTTA 0.95813 -195 ACGCTCCCAGTTTGTTGTTAAATTTATTAT 3 255 1 TTTGTTGTTA 0.95813 -46 TAAAAGAGCATATGTTGTTTGCATGCAACA 4 12 0 TATGTTGTTT 0.879515 -289 ATATGCTCTTTTAGTTGTTTTTGGAATTTT 4 29 1 TTAGTTGTTT 0.934447 -272 TGACCTTTCTTTTGTTCTTTAAGTGAAATT 4 101 0 TTTGTTCTTT 0.870285 -200 ATAAAACTAATTTGTTGTTTCTTTTTCATC 4 190 0 TTTGTTGTTT 0.982892 -111 TACTGGCTTTTTAGTTGTTAGACAAAAATT 7 158 0 TTAGTTGTTA 0.850251 -92 CAACAGCTGCTTTTTTGTTTTTTATCTACC 10 52 1 TTTTTTGTTT 0.819062 -125 ATTGTTTTGGTGTTTTGGGTATTTA 10 162 0 TTTGGTGTTT 0.930667 -15 ********** Masking position 6 Map Score: 12.5523 Number of sites scoring better than the average of aligned sites = 219 Number in coding regions = 197 Number in noncoding regions = 22 Number of orfs with sites within 600 bp upstream = 10 Fraction of orfs with sites within 600 bp upstream = 0.00160617 Motif number 12 ********** No masking Map Score: 5.07571e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 13 ********** No masking Map Score: 5.07571e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 14 ********** No masking Map Score: 5.07571e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0