AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00240_mjan_reg_100.orf -o00240_mjan_100.ace -a/home/amcguire/genomes/ORF_mjan.txt -z/home/amcguire/genomes/mjan.fna -g0.31 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.31 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: MJ0191 25 SSU ribosomal protein S11P (rpsK) MJ0194 31 LSU ribosomal protein L13P (rplM) MJ1175 65 chorismate synthase (aroC) MJ1405 47 M. jannaschii predicted coding region MJ1405 MJ0885 38 DNA polymerase B1 Input sequences: #1 MJ0189 300 SSU ribosomal protein S13P (rpsM) #2 MJ0190 57 SSU ribosomal protein S4P (rpsD) #3 MJ0193 77 LSU ribosomal protein L18E #4 MJ0196 57 DNA-directed RNA polymerase, subunit N (rpoN) #5 MJ0197 140 DNA-directed RNA polymerase, subunit K (rpoK) #6 MJ0252 57 conserved hypothetical protein #7 MJ0293 186 thymidylate kinase (tmk) #8 MJ0388 90 conserved hypothetical protein #9 MJ0397 300 DNA-directed RNA polymerase, subunit E' (rpoE1) #10 MJ0430 168 deoxycytidine triphosphate deaminase (dcd) #11 MJ0511 300 thymidylate synthase (thyA) #12 MJ0654_MJ0655 169 MJ0654: dihydroorotase dehydrogenase (pyrD), MJ0655: LSU ribosomal protein L34E #13 MJ0656 88 cytidylate kinase (cmk) #14 MJ0667 91 thymidine phosphorylase (deoA) #15 MJ0832 259 anaerobic ribonucleoside-triphosphate reductase (nrdD) #16 MJ0888 88 conserved hypothetical protein #17 MJ1039 174 DNA-directed RNA polymerase, subunit H (rpoH) #18 MJ1041 85 DNA-directed RNA polymerase, subunit B' (rpoB1) #19 MJ1042 108 DNA-directed RNA polymerase, subunit A' (rpoA1) #20 MJ1043 74 DNA-directed RNA polymerase, subunit A'' (rpoA2) #21 MJ1102 101 deoxycytidine triphosphate deaminase, putative (dcd) #22 MJ1109 300 orotate phosphoribosyl transferase (pyrE) #23 MJ1149 59 mutator MutT protein, putative (mutT) #24 MJ1174 84 CTP synthase (pyrG) #25 MJ1176 121 proteasome regulatory AAA-ATPase #26 MJ1265 189 nucleoside diphosphate kinase, (ndk) #27 MJ1390 187 DNA-directed RNA polymerase, subunit I (rpoI) #28 MJ1404 300 M. jannaschii predicted coding region MJ1404 #29 MJ1406 89 aspartate carbamoyltransferase regulatory chain (pyrI) #30 MJ1490 153 dihydroorotase (pyrC) #31 MJ1537 148 M. jannaschii predicted coding region MJ1537 #32 MJ1581 260 aspartate carbamoyltransferase catalytic chain (pyrB) #33 MJ1675 113 pseudouridylate synthase I (truA) Motif number 1 CTTCAACATCAAATTAATAACTATCCTTTA 1 12 1 AAATTAATAA 0.770125 -289 AACCGAAAATAATATATAATATGGTATCCA 1 53 1 AATATATAAT 0.661178 -248 GTATTGTGGGAATATATAAAAAGAATATAT 1 99 1 AATATATAAA 0.924834 -202 ATATAAAAAGAATATATAAAAAATGAAACA 1 112 1 AATATATAAA 0.924834 -189 TAGATATTAAAAAATAAAAAGAAGTGGCGC 1 234 0 AAAATAAAAA 0.939091 -67 TTATAGTAAATAGATATTAAAAAATAAAAA 1 244 0 TAGATATTAA 0.512718 -57 AACCTTATAATAATTATAAAAGGTTTGAAG 3 40 1 TAATTATAAA 0.593004 -38 AATTTTTGGAAAGATATTATCTTTTCTTTT 4 22 1 AAGATATTAT 0.475514 -36 TTTCTCACCCAAAATAAAAGAAAAGATAAT 4 37 0 AAAATAAAAG 0.529487 -21 AAAGAATAATAAGTTTAAAAATCTAA 5 7 0 AAGTTTAAAA 0.514205 -134 TCACCTCTGAAATATATAAAATATCAAATG 5 117 0 AATATATAAA 0.924834 -24 ATAAATTCACAATATATAAAATATTCTTAA 6 21 1 AATATATAAA 0.924834 -37 CTTATTAGGAATTTATAATGATTAATAAT 7 10 1 AATTTATAAT 0.436232 -177 TTATCACCAAAAGTTATAAATAAGATTTAT 7 41 0 AAGTTATAAA 0.805299 -146 TACCATAGCTTATATAATAAAGTTTTGCAT 8 37 0 TATATAATAA 0.48941 -54 TAATAAAGTAAATTTATAAATTACCATAGC 8 58 0 AATTTATAAA 0.829897 -33 AGTATCACCAAAATAATAAAGTAAATTTA 8 72 0 AAAATAATAA 0.89417 -19 TTTGTATGGTTAATTATAAATATAGGTTTG 9 170 1 TAATTATAAA 0.593004 -131 GTTTGTGGCAAAATTAATAATTACATTAAT 9 195 1 AAATTAATAA 0.770125 -106 GAATCAGTTAAATTTAATAAAAAAAGAGTA 9 266 0 AATTTAATAA 0.67372 -35 TAAAAAAAGAAAAATAAAATTATTACAATT 10 16 0 AAAATAAAAT 0.709753 -153 AAAATAATAAAAAATAAAAAAAGAAAAATA 10 30 0 AAAATAAAAA 0.939091 -139 TATATAGATAAAAATAATAAAAAATAAAAA 10 40 0 AAAATAATAA 0.89417 -129 AATTTCTTTGAAAATTATAATTATATATTT 10 73 0 AAAATTATAA 0.736826 -96 TTTTCAAAGAAATTTAAAAATTAATGCTAA 10 89 1 AATTTAAAAA 0.790267 -80 ATACCAAATGTAGATATAAACCCAACAAAA 10 130 1 TAGATATAAA 0.657542 -39 GTGCCTTATTTAATTAAAAACTTTGATAAT 11 24 0 TAATTAAAAA 0.529476 -277 ATTATCAAAGAAAATATTATTTACTATGGA 11 80 0 AAAATATTAT 0.634377 -221 AATTTGATGAAATATAAAAAAGATTTAAAT 11 224 0 AATATAAAAA 0.904786 -77 TTTTAATGGTAAATTAAAAATTAAGAAAAC 12 105 0 AAATTAAAAA 0.859421 -65 TTATGATATTAAATTTTTAATGGTAAATTA 12 119 0 AAATTTTTAA 0.589733 -51 CCAAAAGTTTTAAATACTAATTCT 12 156 0 AAGTTTTAAA 0.578157 -14 TATTAAAGAAAATATATAAAGTTTAGAAAA 14 32 1 AATATATAAA 0.924834 -60 TAAAGTTTAGAAAATATAAAAATTTAATAG 14 48 1 AAAATATAAA 0.952297 -44 TTTCCGCTTAAATATTTTAAATAAGTGCGA 15 117 0 AATATTTTAA 0.69082 -143 AAAATAGTAAAAAATAAAATTATTTGTAGA 15 228 0 AAAATAAAAT 0.709753 -32 AATAAATTTGAAAATTTAATTAACTTAAGT 16 11 1 AAAATTTAAT 0.512008 -78 TAATTAACTTAAGTTTTTAACAATATTTAT 16 27 1 AAGTTTTTAA 0.428919 -62 TAAAAAGTATAAATTATAAATAAATAAAGT 16 57 0 AAATTATAAA 0.887839 -32 TGTCATTAATTATATTTAAACAAAATGGTA 17 142 1 TATATTTAAA 0.428735 -33 TGATTTTGAAAAGATTAAAATTAAACATCA 18 49 0 AAGATTAAAA 0.727483 -37 TATTTTTAGAAAAATAAAAAGTAAAAATAA 19 60 1 AAAATAAAAA 0.939091 -49 ATAAAAAGTAAAAATAAAAGCAAATCCTTA 19 73 1 AAAATAAAAG 0.529487 -36 CTCACCTTAAAAAATTAAAAGATGTAAAAA 20 50 0 AAAATTAAAA 0.836309 -25 TTAATCACTAAAAATAATAATCTATCTA 22 9 0 AAAATAATAA 0.89417 -292 TCAGCTTTAAAAGATATAAAATCCCGTTTT 22 125 0 AAGATATAAA 0.91252 -176 TTAAAGCTGAAAATTATAAATTTGAAAGTA 22 145 1 AAATTATAAA 0.887839 -156 CCTTAATAGTAAGATATTAAATAGACAAAA 22 189 1 AAGATATTAA 0.851109 -112 TCTGTAGCTTAAGATAAAAAAAGTTTTGTC 22 212 0 AAGATAAAAA 0.889577 -89 AAATTTTAAATATCTCTCCC 23 1 1 AAATTTTAAA 0.723989 -59 CTCTCACTTATATATATAAAAACTTCATTA 23 39 0 TATATATAAA 0.69369 -21 AATAAAATAAAAAATATAAAAATT 24 5 0 AAAATATAAA 0.952297 -80 AATAATAATATAGATAATAAAATAAAAAAT 24 20 0 TAGATAATAA 0.448312 -65 AAATAAAAACAAAATAATAATAATATAGAT 24 35 0 AAAATAATAA 0.89417 -50 CAAATTAAGATAAATAAAAACAAAATAATA 24 46 0 TAAATAAAAA 0.739444 -39 ACATAAAATTTAAATATAAGAATT 25 5 1 AAAATTTAAA 0.868686 -117 AATCCATAATAAAATAAAATGATTATAATA 25 67 1 AAAATAAAAT 0.709753 -55 AAGTGAAGGGAATATTATAATCATTTTATT 25 79 0 AATATTATAA 0.63311 -43 ATATTGCTCATATATAAAAAATGAAATTGC 26 46 0 TATATAAAAA 0.636248 -144 TCTATCTCGAAAAATTTAAATATTGCTCAT 26 65 0 AAAATTTAAA 0.868686 -125 TTTGATACGGAAGTTATTAAAAATAATGAT 26 111 0 AAGTTATTAA 0.69387 -79 AAATTTAAAATAAATAAAAATCAA 27 5 0 TAAATAAAAA 0.739444 -183 AAAAATATGAAAAATTTAAAATAAATAAAA 27 16 0 AAAATTTAAA 0.868686 -172 AAGAATAGTAAAAATAAAAATATGAAAAAT 27 31 0 AAAATAAAAA 0.939091 -157 TATTAATCCGAATATATAAATAAAGAATAG 27 53 0 AATATATAAA 0.924834 -135 ATTAATAAAAAATATATAAAATTATT 28 7 0 AATATATAAA 0.924834 -294 TAACCTACACAAATTAATAAAAAATATATA 28 19 0 AAATTAATAA 0.770125 -282 CTGCATAAGTAATATAATATACATAATAAC 28 45 0 AATATAATAT 0.45233 -256 ATGCCAAAATAATATATAAATCTTACGATT 28 81 1 AATATATAAA 0.924834 -220 GATTTTTTAAAAAATATTATTACTCAAATA 28 107 1 AAAATATTAT 0.634377 -194 CTCAAATATTAATTTTTAAACAAATAATGA 28 129 1 AATTTTTAAA 0.617837 -172 AAAACTTTAAAATATTTTAAAATATCTTTT 28 160 0 AATATTTTAA 0.69082 -141 TATCACATTTAATATTTAAAGTTTAACAGC 28 250 0 AATATTTAAA 0.803045 -51 AAAAATGCTAAAAATATTAGAGAAAATTGA 29 50 1 AAAATATTAG 0.443983 -40 TTAAAATTTAAAGCTTTTGTTC 29 78 0 AAAATTTAAA 0.868686 -12 GTATTAAATAAAAATATTAACCATCTTTAA 30 88 0 AAAATATTAA 0.916246 -66 AAAACTAATAAAAATAAAAAGTATTAAATA 30 108 0 AAAATAAAAA 0.939091 -46 ATCACATCTTAATTTATTAATACAAAACTA 30 131 0 AATTTATTAA 0.727786 -23 CAGAGATAAAAATTTTTTAAGGAACTGATG 31 34 1 AATTTTTTAA 0.469763 -115 TATTTAGGGTAAAATATAAATATGAGGAGG 31 112 1 AAAATATAAA 0.952297 -37 ATTCAATCATAAAATTTTATTTCTGTGAAA 32 85 1 AAAATTTTAT 0.365068 -176 TGTGTCTTTCAAGATAATAATTTGCTAATT 32 159 0 AAGATAATAA 0.815319 -102 TTTGATAGAGTATTTATAAAAAAGATTTAT 32 211 0 TATTTATAAA 0.473133 -50 TGGAACCTTAAAAATAATAAAAAAGTCATA 33 28 1 AAAATAATAA 0.89417 -86 TCAAATTTACAAAATAAAAAACTATTTATA 33 56 0 AAAATAAAAA 0.939091 -58 ********** Masking position 5 Map Score: 92.7942 Number of sites scoring better than the average of aligned sites = 3446 Number in coding regions = 2334 Number in noncoding regions = 1112 Number of orfs with sites within 600 bp upstream = 635 Fraction of orfs with sites within 600 bp upstream = 0.101992 Motif number 2 CTCTGAAACGTGTTTCATTTTTTATATATTCTT 1 119 0 TGTTTTTTTT 0.456811 -182 CCGCGCCACTTCTTTTTATTTTTTAATATCTAT 1 232 1 TCTTATTTTT 0.841315 -69 ATTTATTTTACAATTTTTGGAAAGATAT 4 6 1 TTTTATTTTT 0.96403 -52 AGATATTATCTTTTCTTTTATTTTGGGTGAGAA 4 33 1 TTTTTTATTT 0.663973 -25 TTTTTAAACTTATTATTCTTTTTAACGGGGCCG 5 16 1 TATTCTTTTT 0.863489 -125 TTTCATAACTTATAACAATTTTTGTATGGTTAA 9 150 1 TATAATTTTT 0.891346 -151 ACATTAATTATTTATTGTTTTTTATAATCTCAC 9 217 1 TTTATTTTTT 0.815132 -84 GTAATAATTTTATTTTTCTTTTTTTATTTTTTA 10 20 1 TATTCTTTTT 0.863489 -149 TTTTTTTATTTTTTATTATTTTTATCTATATAT 10 38 1 TTTTATTTTT 0.96403 -131 ATGGAAGATATTTAAATCTTTTTTATATTTCAT 11 215 1 TTTACTTTTT 0.912873 -86 TTATACTTGTTGTATCTATTTTTTATCATAATT 11 255 1 TGTAATTTTT 0.721583 -46 TCTATAATGTTTTCTTAATTTTTAATTTACCAT 12 97 1 TTTCATTTTT 0.68158 -73 ATTTAATTAGTATAAATATTTTTTCATTGTAAT 13 45 0 TATAATTTTT 0.891346 -44 TAATTTTATTTTTTACTATTTTTTGGGTGATTA 15 236 1 TTTTATTTTT 0.96403 -24 AACTTAAGTTTTTAACAATATTTATACTTTATT 16 32 1 TTTAATATTT 0.858946 -57 TTTATTGTCCTATAAAAATATTTCTTTATTTGA 17 19 0 TATAATATTT 0.723582 -156 ACAAATATTTTTTTCTCATATTTATTTTTTACT 17 52 0 TTTTATATTT 0.89531 -123 AAACTTTATTTATTATGTTTTTTCTGAGTTTTT 18 14 1 TATTTTTTTT 0.72692 -72 AATCTTGCCTTATTACAATATTTTTAGAAAAAT 19 42 1 TATTATATTT 0.786155 -67 TTTGAAAAAGTTTTGAAATTTTTGAATTTAGAG 20 13 0 TTTTATTTTT 0.96403 -62 AATTTTTACATCTTTTAATTTTTTAAGGTGAGA 20 48 1 TCTTATTTTT 0.841315 -27 ACAATAGGGTTTTATCTCTTTTTCATAAATTTC 22 62 1 TTTACTTTTT 0.912873 -239 AATTTTTATATTTTTTATTTTATTA 24 3 1 TTTTATTTTT 0.96403 -82 AAAATTTAAATATAAGAATTTTTATTATAATTC 25 15 1 TATAATTTTT 0.891346 -107 ATATGAGCAATATTTAAATTTTTCGAGATAGAT 26 63 1 TATTATTTTT 0.920134 -127 TTACTAATACTTTAAAGCTTTTTGATACGGAAG 26 128 0 TTTACTTTTT 0.912873 -62 TTGATTTTTATTTATTTTAAATTTTTC 27 5 1 TTTTTTATTT 0.663973 -183 TATTTTAAATTTTTCATATTTTTATTTTTACTA 27 23 1 TTTTATTTTT 0.96403 -165 TAGAACAGGTTTTAGATATTTTTATTAATCCGA 27 72 0 TTTAATTTTT 0.950208 -116 TTACATCCTCTTTTTTTCTATTTGATTGTATAT 27 132 0 TTTTCTATTT 0.824419 -56 GATGTAAAATTTTTCAAATTTTTGAAAGAAATG 27 158 1 TTTTATTTTT 0.96403 -30 AATAATTTTATATATTTTTTATTAATTTG 28 7 1 TTTAATTTTT 0.950208 -294 AATATATAAATCTTACGATTTTTTAAAAAATAT 28 91 1 TCTTATTTTT 0.841315 -210 TAAAATATCTTTTATCATTATTTGTTTAAAAAT 28 140 0 TTTATTATTT 0.584542 -161 ATAAAAGATATTTTAAAATATTTTAAAGTTTTC 28 158 1 TTTTATATTT 0.89531 -143 TCTCTAATATTTTTAGCATTTTTATTTGTGTTT 29 40 0 TTTTATTTTT 0.96403 -50 GCTATGGGAATTTATCTATTTTTA 30 2 0 TTTAATTTTT 0.950208 -152 AATATTTTTATTTAATACTTTTTATTTTTATTA 30 100 1 TTTACTTTTT 0.912873 -54 GACAAAGGACTTTACAGCTTTTTATACCATATA 32 25 1 TTTACTTTTT 0.912873 -236 CCAAAATTTTTATAAATCTTTTTTATAAATACT 32 200 1 TATACTTTTT 0.818315 -61 TATATGACTTTTTTATTATTTTTAAGGTTCCAC 33 27 0 TTTTATTTTT 0.96403 -87 AATTAATTCATATTTGTATATTTTCAAATTTAC 33 76 0 TATTATATTT 0.786155 -38 **** ****** Masking position 9 Map Score: 67.4862 Number of sites scoring better than the average of aligned sites = 1070 Number in coding regions = 724 Number in noncoding regions = 346 Number of orfs with sites within 600 bp upstream = 296 Fraction of orfs with sites within 600 bp upstream = 0.0475426 Motif number 3 CAAAAAATTATTGAAGGTGATTAG 2 44 1 TTGGGTGATT 0.844759 -14 TTTTCTTTTATTTTGGGTGAGAAAC 4 43 1 TTTGGTGAGA 0.977426 -15 TTTATATATTTCAGAGGTGAGATA 5 127 1 TCAGGTGAGA 0.856868 -14 TATTGTGAATTTATTGGTGAGAGT 6 3 0 TTAGGTGAGA 0.957082 -55 TTATTTATAACTTTTGGTGATAATAGGCTTAT 7 48 1 CTTGGTGATA 0.868054 -139 GAACAAAAATGTTGTGGTGATATATC 8 5 0 GTTGGTGATA 0.868054 -86 TTACTTTATTATTTTGGTGATACT 8 77 1 ATTGGTGATA 0.816136 -14 AACAAAATACTTTTTGGTGATAGGTT 10 153 1 TTTGGTGATA 0.979793 -16 AAATTCATACTAAAAGGTGAGTTAAAC 12 6 0 TAAGGTGAGT 0.556197 -164 GATAAAGAAATTAGTGGTGATTTAA 14 77 1 TTAGGTGATT 0.889948 -15 TTTTACTATTTTTTGGGTGATTAA 15 246 1 TTTGGTGATT 0.940124 -14 TTATACTTTTTAGTTGGTGAGAGA 16 75 1 TAGGGTGAGA 0.722556 -14 AAATCCTTAATCTTTGGTGATATTG 19 94 1 TCTGGTGATA 0.928657 -15 CTTTTAATTTTTTAAGGTGAGAATAC 20 59 1 TTTGGTGAGA 0.977425 -16 TAACTTAAATTTACCGGTGATATT 25 108 1 TTAGGTGATA 0.961498 -14 GCCATAACATTTTGAGGTGATACCATTAAAAG 26 16 0 TTTGGTGATA 0.979793 -174 ATGAATTAATTTTAAGGTGGTAATTT 33 98 1 TTTGGTGGTA 0.852335 -16 *** ******* Masking position 8 Map Score: 19.8009 Number of sites scoring better than the average of aligned sites = 112 Number in coding regions = 51 Number in noncoding regions = 61 Number of orfs with sites within 600 bp upstream = 74 Fraction of orfs with sites within 600 bp upstream = 0.0118856 Motif number 4 ATTATTTGTCAAACCTTATAATAATTATAAAAGG 3 29 1 AAACTATTAA 0.752077 -49 CGGCCCCGTTAAAAAGAATAATAAGTTTAAAAAT 5 15 0 AAAAGATTAA 0.39297 -126 TCACAATATATAAAATATTCTTAATATTAATTAC 6 27 1 TAAATTTTAA 0.474459 -31 TTAATCATTATAAATTCCTAATAAG 7 2 0 TAAATCTTAA 0.313074 -185 TATTATCACCAAAAGTTATAAATAAGATTTATCA 7 39 0 AAAATATATA 0.558833 -148 TATATATGAGAAAATTCATTTTAAAGAGTGCTTA 9 107 0 AAAATATTAA 0.935235 -194 TTAACCATACAAAAATTGTTATAAGTTATGAAAC 9 149 0 AAAATGTTAA 0.614937 -152 GGTTTGTGGCAAAATTAATAATTACATTAATTAT 9 194 1 AAAATATTTA 0.589668 -107 TGAATCAGTTAAATTTAATAAAAAAAGAGTAACT 9 263 0 AAATTATAAA 0.421778 -38 ATATATAGATAAAAATAATAAAAAATAAAAAAAG 10 37 0 AAAATATAAA 0.927161 -132 ATTAATTTTTAAATTTCTTTGAAAATTATAATTA 10 80 0 AAATTTTAAA 0.188813 -89 AAGAAATTTAAAAATTAATGCTAAAAATGTTTTT 10 95 1 AAAATATTAA 0.935235 -74 GATGAAATATAAAAAAGATTTAAATATCTTCCAT 11 215 0 AAAAAATAAA 0.49311 -86 TAATACTATCAAAATTCATACTAAAAGGTGAGTT 12 15 0 AAAATATTAA 0.935235 -155 AAAATTAAGAAAACATTATAGAAATACACACTAT 12 85 0 AAACTATAAA 0.727813 -85 ATTAATTAAAATTATTTTAATTAATGCCAT 13 7 1 TAAATATTAA 0.738843 -82 ACAATGAAAAAATATTTATACTAATTAAATCCAT 13 48 1 AATATATTAA 0.290019 -41 TTCACCAATGAGAAGTAATATTAAAGAAAATATA 14 14 1 AGAATATTAA 0.382255 -78 TAATCACCCAAAAAATAGTAAAAAATAAAATTAT 15 235 0 AAAATGTAAA 0.584663 -25 AATATTGTTAAAAACTTAAGTTAATTAAATTTTC 16 20 0 AAAATAATAA 0.595307 -69 AATATGAGAAAAAAATATTTGTAAGGATGCATCA 17 63 1 AAAATTTTAA 0.821681 -112 AATTAATGACAAAAATTAGGTTAAAAGAGAGACT 17 119 0 AAAATAGTAA 0.398557 -56 AAAAACTCAGAAAAAACATAATAAATAAAGTTTC 18 13 0 AAAAAATTAA 0.524631 -73 TAGAAAAATAAAAAGTAAAAATAAAAGCAAATCC 19 66 1 AAAATAATAA 0.595308 -43 CAAAAATTTCAAAACTTTTTCAAAACAATTTTTA 20 22 1 AAAATTTAAA 0.80244 -53 TTAATCAATAGAAATTTATGAAAAAGAGATAAAA 22 71 0 GAAATATAAA 0.39846 -230 TATTAAGGTTAAAAATTATTCTTACTTTCAAATT 22 163 0 AAAATATTTA 0.589668 -138 AGAATTATAGAAACTTTTTTAAAAGAATTAAACA 22 239 1 AAACTTTAAA 0.460407 -62 ATATATATAAAAACTTCATTAAAAATATAGGGAG 23 26 0 AAACTATAAA 0.727813 -34 ATAATAAAATAAAAAATATAAAAATT 24 3 0 AAAAAATAAA 0.49311 -82 TAAATAAAAACAAAATAATAATAATATAGATAAT 24 32 0 CAAATATTAA 0.580354 -53 CATAATAAAATAAAATGATTATAATATTCCCTTC 25 71 1 TAAATATTAA 0.738854 -51 GGAAGTTATTAAAAATAATGATAATATTGTTGGT 26 99 0 AAAATATTAA 0.935235 -91 CAAAAAGCTTTAAAGTATTAGTAATAATAATAGT 26 137 1 TAAATTTTAA 0.474461 -53 AAAAATATGAAAAATTTAAAATAAATAAAAATCA 27 12 0 AAAATAATAA 0.595308 -176 AAAATATCTAAAACCTGTTCTAAAATTTATTTAT 27 83 1 AAACTTTAAA 0.460407 -105 AAAGAGGATGTAAAATTTTTCAAATTTTTGAAAG 27 152 1 TAAATTTAAA 0.443145 -36 ATAACCTACACAAATTAATAAAAAATATATAAAA 28 16 0 CAAATATAAA 0.549354 -285 TAATTTTTAAACAAATAATGATAAAAGATATTTT 28 138 1 ACAATATTAA 0.382255 -163 AAAGATATTTTAAAATATTTTAAAGTTTTCTTTA 28 161 1 TAAATTTAAA 0.443145 -140 ATCAATCATCAAAATTTCTGTTAAAAG 28 284 1 AAAATCTTAA 0.699356 -17 AAACACAAATAAAAATGCTAAAAATATTAGAGAA 29 40 1 AAAATCTAAA 0.672181 -50 AATATTAGAGAAAATTGAACAAAAGCTTTAAATT 29 62 1 AAAATAAAAA 0.564584 -28 TTATTAATACAAAACTAATAAAAATAAAAAGTAT 30 114 0 AAAATATAAA 0.927161 -40 TATTTTCTCCAAAATTTTTATAAATCTTTTTTAT 32 192 1 AAAATTTAAA 0.80244 -69 AAAATAATAAAAAAGTCATATAAATAGTTTTTTA 33 38 1 AAAATATAAA 0.927161 -76 TTACCACCTTAAAATTAATTCATATTTGTATATT 33 87 0 AAAATATATA 0.558833 -27 **** * ** *** Masking position 14 Map Score: 33.6275 Number of sites scoring better than the average of aligned sites = 1306 Number in coding regions = 952 Number in noncoding regions = 354 Number of orfs with sites within 600 bp upstream = 308 Fraction of orfs with sites within 600 bp upstream = 0.04947 Motif number 5 TGAACCCCCGCGGGGCAAAGCCCCATGGGATCTC 1 187 0 CGGCAGCCCC 0.986056 -114 TGCCCCGCGGGGGTTCAAATCCCCCCCTCCGCGC 1 204 1 GGGCATCCCC 0.996026 -97 ACTTGAACCCGGGTCGCACGCCCCCCAAGCGCAC 5 69 0 GGGGAGCCCC 0.760731 -72 CGTGCGACCCGGGTTCAAGTCCCGGCGGCCCCAC 5 83 1 GGGCATCCCG 0.977853 -58 CGGGGGTCGGGGGTTCAAATCCCCTCGGGTCCGC 9 15 0 GGGCATCCCC 0.996026 -286 ACATTAATTGGGGCTGAAAGCCCCAACTTATAAC 11 112 0 GGGGAGCCCC 0.997111 -189 TCCCAATAGAGGGGGCTACGCCCCCTCTATGGTT 11 168 1 GGGCAGCCCC 0.512367 -133 ACATTAAAAGGGGCTGTAAGCCCCTTCTTAATGT 21 48 1 GGGGAGCCCC 0.972951 -54 *** * * ***** Masking position 8 Map Score: 20.3297 Number of sites scoring better than the average of aligned sites = 27 Number in coding regions = 4 Number in noncoding regions = 23 Number of orfs with sites within 600 bp upstream = 22 Fraction of orfs with sites within 600 bp upstream = 0.00353357 Motif number 6 TAATTTCGTGTTTTATAGTAAATAGATATTAAA 1 253 0 TTTATTAAAT 0.93524 -48 AAAACCATTTTCATTCTAATTATTTGTCAAA 3 9 1 TTTATTAATT 0.853067 -69 TATCTAAATATATAATTATAATTTTCAAAGAAA 10 68 1 TATATTAATT 0.451239 -101 TAAAAATGTTTTTAATACCAAATGTAGATATAA 10 116 1 TTTATCAAAT 0.831859 -53 GGCTTCTAAATTCCATAGTAAATAATATTTTCT 11 69 1 TTCATTAAAT 0.841096 -232 TATCTTCCATTTCAATTATATATAACCATAGAG 11 192 0 TTCATTATAT 0.614528 -109 TGTATCTATTTTTTATCATAATTAAATACAATT 11 265 1 TTTATTAATT 0.852565 -36 ATATTAAATTTTTAATGGTAAATTAAAAATTAA 12 111 0 TTTATTAAAT 0.935696 -59 CTTATGGTATTATGATATTAAATTTTTAATGGT 12 125 0 TATATTAAAT 0.673325 -45 ATAAATATTTTTTCATTGTAATTTTGATGGCAT 13 34 0 TTTATTAATT 0.853067 -55 ACCCTATTGTTTCCATTCCAAATCGGTCTGATT 22 39 0 TTCATCAAAT 0.642785 -262 ATATAAGAATTTTTATTATAATTCCATATGGTA 25 24 1 TTTATTAATT 0.852565 -98 CTATCCCGCTTTTGATATTATATAATTACTATT 26 165 0 TTTATTATAT 0.814236 -25 ATAGTGGAGATTTTAGTATAAATAAATTTTAGA 27 101 0 TTTAGTAAAT 0.631407 -87 TTTTTTTCTATTTGATTGTATATAGTGGAGATT 27 122 0 TTTATTATAT 0.814236 -66 CTGTTAAACTTTAAATATTAAATGTGATATAAT 28 251 1 TTAATTAAAT 0.571228 -50 CATATTTATATTTTACCCTAAATAGGACTTTCG 31 103 0 TTTACTAAAT 0.63371 -46 CTTTACAGCTTTTTATACCATATAAGGAATTTT 32 34 1 TTTATCATAT 0.598408 -227 *** ** ***** Masking position 1 Map Score: 9.70888 Number of sites scoring better than the average of aligned sites = 345 Number in coding regions = 240 Number in noncoding regions = 105 Number of orfs with sites within 600 bp upstream = 102 Fraction of orfs with sites within 600 bp upstream = 0.0163829 Motif number 7 ACTTCAACATCAAATTAATAACTATCC 1 8 1 CATCAAATTA 0.377917 -293 ACTCTTTTTTTATTAAATTTAACTGATTCA 9 267 1 TATTAAATTT 0.597645 -34 TTTAACCAATTATCAAAGTTTTTAATTAAA 11 16 1 TATCAAAGTT 0.616613 -285 TTTTATATTTCATCAAATTTTTATACTTGT 11 235 1 CATCAAATTT 0.911864 -66 ATCTATTTTTTATCATAATTAAATACAATT 11 268 1 TATCATAATT 0.451596 -33 ATTCTAATACTATCAAAATTCATACTAAAA 12 23 0 TATCAAAATT 0.873156 -147 GGTATTATGATATTAAATTTTTAATGGTAA 12 123 0 TATTAAATTT 0.597645 -47 TAATTAATGCCATCAAAATTACAATGAAAA 13 28 1 CATCAAAATT 0.857308 -61 TTTCTTTATCTATTAAATTTTTATATTTTC 14 57 0 TATTAAATTT 0.597645 -35 AATTAATCCTTATCAATATTTCAACATAAT 15 18 1 TATCAATATT 0.287849 -242 TTAATTAAATTTTCAAATTTATT 16 4 0 TTTCAAATTT 0.774657 -85 TGTAAGGATGCATCACATTTATTACATCAT 17 82 1 CATCACATTT 0.656884 -93 TTATTCTTACTTTCAAATTTATAATTTTCA 22 152 0 TTTCAAATTT 0.774657 -149 AAATAAAAAATATAAAAATT 24 1 0 TATAAAAATT 0.529005 -84 ACATAAAATTTAAATATAAGA 25 2 1 CATAAAATTT 0.627991 -120 ATTTTAAATTTTTCATATTTTTATTTTTAC 27 24 1 TTTCATATTT 0.291404 -164 ATGTAAAATTTTTCAAATTTTTGAAAGAAA 27 159 1 TTTCAAATTT 0.774657 -29 ATTGATATTATATCACATTTAATATTTAAA 28 260 0 TATCACATTT 0.68686 -41 TAATATCAATCATCAAAATTTCTGTTAAAA 28 280 1 CATCAAAATT 0.857308 -21 ATGCCTTTGGCATCAAAATTCCTTATATGG 32 51 0 CATCAAAATT 0.857308 -210 TTTATTCAATCATAAAATTTTATTTCTGTG 32 82 1 CATAAAATTT 0.627991 -179 AAAAAAGATTTATAAAAATTTTGGAGAAAA 32 194 0 TATAAAAATT 0.529005 -67 ATTTGTATATTTTCAAATTTACAAAATAAA 33 68 0 TTTCAAATTT 0.774657 -46 ********** Masking position 3 Map Score: 17.4983 Number of sites scoring better than the average of aligned sites = 418 Number in coding regions = 353 Number in noncoding regions = 65 Number of orfs with sites within 600 bp upstream = 65 Fraction of orfs with sites within 600 bp upstream = 0.0104401 Motif number 8 TTCGTGTTTTATAGTAAATAGATATTAAAA 1 252 0 ATAGTAAATA 0.888764 -49 TATGAAACGAAAAGTATATATATGAGAAAA 9 127 0 AAAGTATATA 0.860675 -174 TCTAAATTCCATAGTAAATAATATTTTCTT 11 73 1 ATAGTAAATA 0.888764 -228 ATGGATTTAATTAGTATAAATATTTTTTCA 13 52 0 TTAGTATAAA 0.707669 -37 ATCTTTTAAAATAGTATATAAATGGAAGAA 15 85 0 ATAGTATATA 0.93473 -175 CACCCAAAAAATAGTAAAAAATAAAATTAT 15 235 0 ATAGTAAAAA 0.899511 -25 ATAAATAAATAAAGTATAAATATTGTTAAA 16 42 0 AAAGTATAAA 0.873751 -47 CACCAACTAAAAAGTATAAATTATAAATAA 16 64 0 AAAGTATAAA 0.873751 -25 TAGGACAATAAAAGTAAAAAATAAATATGA 17 40 1 AAAGTAAAAA 0.794291 -135 AGAAAAATAAAAAGTAAAAATAAAAGCAAA 19 67 1 AAAGTAAAAA 0.794291 -42 ATATCACCAAATTGTATATACTCTGCTCTT 22 280 0 ATTGTATATA 0.713094 -21 ATAATTCCATATGGTATATAAATGATAATC 25 41 1 ATGGTATATA 0.793583 -81 TAAATAAAGAATAGTAAAAATAAAAATATG 27 37 0 ATAGTAAAAA 0.899511 -151 AGTGGAGATTTTAGTATAAATAAATTTTAG 27 102 0 TTAGTATAAA 0.707669 -86 TTTCTATTTGATTGTATATAGTGGAGATTT 27 121 0 ATTGTATATA 0.713094 -67 GAGGTCAATAATAGTGTATAG 31 138 1 ATAGTGTATA 0.630288 -11 AATTCCTTATATGGTATAAAAAGCTGTAAA 32 35 0 ATGGTATAAA 0.811577 -226 ********** Masking position 5 Map Score: 14.2222 Number of sites scoring better than the average of aligned sites = 187 Number in coding regions = 111 Number in noncoding regions = 76 Number of orfs with sites within 600 bp upstream = 79 Fraction of orfs with sites within 600 bp upstream = 0.0126887 Motif number 9 GGATTTGAACCCCCGCGGGGCAAAGCCCCAT 1 195 0 CCCCCGGGGC 0.990451 -106 TTCAAATCCCCCCCTCCGCGCCACTTCTTTT 1 217 1 CCCCCCGCGC 0.995753 -84 ATCCAGGCTACCCCACGGCCCCGTTAAAAAG 5 33 0 CCCCCGGCCC 0.993118 -108 GGTCGCACGCCCCCCAAGCGCACAGGATATC 5 61 0 CCCCAAGCGC 0.898545 -80 GGGTTCAAGTCCCGGCGGCCCCACCATTTGA 5 93 1 CCCGCGGCCC 0.954478 -48 GGGTTCAAATCCCCTCGGGTCCGCCAAT 9 8 0 CCCCCGGGTC 0.949236 -293 GGATTTGAACCCCCGACCCCCGGCTTAGAAG 9 27 1 CCCCACCCCC 0.824655 -274 GATACCCTAACACCTCCTCGCTATGCCCGGA 32 122 1 CACCCCTCGC 0.837732 -139 TGCTAATTTACACCTCCGGGCATAGCGAGGA 32 136 0 CACCCCGGGC 0.95968 -125 **** ****** Masking position 3 Map Score: 7.4258 Number of sites scoring better than the average of aligned sites = 16 Number in coding regions = 3 Number in noncoding regions = 13 Number of orfs with sites within 600 bp upstream = 6 Fraction of orfs with sites within 600 bp upstream = 0.000963701 Motif number 10 TAATCATTATAAATTCCTAATAAG 7 4 0 AAATCCTAAT 0.402246 -183 GCCATGGGGAAAACCCCTATTGGGATACCCG 7 83 1 AAACCCTATT 0.92228 -104 ATATGCTCTCAAATCTTTATTAAAGTGAGGT 7 132 0 AAACTTTATT 0.863773 -55 TTGTTCATGCAAAACTTTATTATATAAGCTA 8 31 1 AAACTTTATT 0.863772 -60 ATTTTGCCACAAACCTATATTTATAATTAAC 9 178 0 AAACTATATT 0.499888 -123 GAAGATATTTAAATCTTTTTTATATTTCATC 11 218 1 AAACTTTTTT 0.630304 -83 AAATCAATAAAAATCTCTCTTAG 18 73 1 AAACTCTCTT 0.768565 -13 AAATAAAAGCAAATCCTTAATCTTTGGTGAT 19 84 1 AAACCTTAAT 0.482259 -25 AAAAAGAGATAAAACCCTATTGTTTCCATTC 22 54 0 AAACCCTATT 0.92228 -247 TCTTTTTCATAAATTTCTATTGATTAAAATC 22 78 1 AAATTCTATT 0.820813 -223 TTAAATAGACAAAACTTTTTTTATCTTAAGC 22 205 1 AAACTTTTTT 0.630285 -96 AAAATATTTTAAAGTTTTCTTTAATATTGTT 28 172 1 AAATTTTCTT 0.424262 -129 TCAATCATCAAAATTTCTGTTAAAAG 28 285 1 AAATTCTGTT 0.419446 -16 TATCTCTGCGAAAGTCCTATTAAAAATAAGT 31 11 0 AAATCCTATT 0.826126 -138 ATGAACTGCGAAAGTCCTATTTAGGGTAAAA 31 95 1 AAATCCTATT 0.826126 -54 GGGAAAACCCTATTGACAAAGGAC 32 4 1 AAACCCTATT 0.92228 -257 ATTCAATCATAAAATTTTATTTCTGTGAAAG 32 85 1 AAATTTTATT 0.71741 -176 AAATTTTTATAAATCTTTTTTATAAATACTC 32 203 1 AAACTTTTTT 0.630304 -58 *** ******* Masking position 8 Map Score: 12.2327 Number of sites scoring better than the average of aligned sites = 476 Number in coding regions = 383 Number in noncoding regions = 93 Number of orfs with sites within 600 bp upstream = 75 Fraction of orfs with sites within 600 bp upstream = 0.0120463 Motif number 11 TAAAAAATAAAAAGAAGTGGCGCGGAGGGGG 1 226 0 AAAGAGTGGC 0.798975 -75 TATTATTCTTTTTAACGGGGCCGTGGGGTAG 5 26 1 TTTAAGGGGC 0.864375 -115 TAAAATATCAAATGGTGGGGCCGCCGGGACT 5 100 0 AATGGGGGGC 0.797655 -41 TAATTGGTTATAAGTTGGGGCTTTCAGCCCC 11 106 1 TAAGTGGGGC 0.948147 -195 TGCTTGGACATTAATTGGGGCTGAAAGCCCC 11 122 0 TTAATGGGGC 0.880715 -179 GAGTATCCCAATAGAGGGGGCTACGCCCCCT 11 163 1 ATAGAGGGGC 0.980372 -138 ATATATAACCATAGAGGGGGCGTAGCCCCCT 11 177 0 ATAGAGGGGC 0.980372 -124 CCAAGAGACATTAAAAGGGGCTGTAAGCCCC 21 41 1 TTAAAGGGGC 0.952759 -61 CGGGATACATTAAGAAGGGGCTTACAGCCCC 21 57 0 TAAGAGGGGC 0.980372 -45 ***** ***** Masking position 11 Map Score: 5.48095 Number of sites scoring better than the average of aligned sites = 72 Number in coding regions = 54 Number in noncoding regions = 18 Number of orfs with sites within 600 bp upstream = 13 Fraction of orfs with sites within 600 bp upstream = 0.00208802 Motif number 12 AAAACCATTTTCATTCTAATTATTTGTCAAACCT 3 11 1 TATTTATTAT 0.8522 -67 TTCTTAATATTAATTACAGTTAAT 6 44 1 TATTCATTAT 0.856745 -14 TAAATAAGATTTATCATTATTAATCATTATAAAT 7 21 0 TATCTTTTAT 0.785789 -166 AAAAATAAAATTATTACAATTACAAT 10 3 0 TATTCATTAA 0.643019 -166 TCTCCCTTTGTAATTGTATTTAATTATGATAAAA 11 275 0 TATTTATTAT 0.8522 -26 AATTAGCTTCTTATTATTATCAAAAAATCGTAAT 12 50 1 TATTTTTCAA 0.643019 -120 TTAATTAAAATAATTTTAATTAAT 13 1 0 TATTTATTAT 0.8522 -88 AAATATAAATTAATCCTTATCAATATTTCAACAT 15 11 1 TATCTTTCAT 0.791878 -249 TTTTAAAAGATTATCGCACTTATTTAAAATATTT 15 104 1 TATCCATTAT 0.791878 -156 TCTTTTAACCTAATTTTTGTCATTAATTATATTT 17 125 1 TATTTTTCAT 0.856745 -50 CAAATCGGTCTGATTTTAATCACTAAAAATAATA 22 20 0 TATTTATCAT 0.856745 -281 TCTAAGAGGCTGATTTTAATCAATAGAAATTTAT 22 86 0 TATTTATCAT 0.856745 -215 AACAATATTATCATTATTTTTAATAACTTCCGTA 26 102 1 TATTTTTTAT 0.8522 -88 TGATATTATATAATTACTATTATTATTACTAATA 26 152 0 TATTCTTTAT 0.856745 -38 CTTTTTTCATTTCTTTCAAAAATTTGAAAA 27 168 0 TATTCTTCAA 0.651365 -20 TGTGTTTCTTTTATCTCATTCAATACCTCTAATT 29 13 0 TATCCATCAT 0.797837 -77 TTAATACTTTTTATTTTTATTAGTTTTGTATTAA 30 111 1 TATTTTTTAT 0.8522 -43 AATTATCCCTATTAAAGCATATATAT 32 245 0 TATCCTTTAA 0.534012 -16 * *** ** *** * Masking position 10 Map Score: 11.6073 Number of sites scoring better than the average of aligned sites = 373 Number in coding regions = 265 Number in noncoding regions = 108 Number of orfs with sites within 600 bp upstream = 90 Fraction of orfs with sites within 600 bp upstream = 0.0144555 Motif number 13 AATCACCTTCAATAATTTTTTGTTGAATGT 2 36 0 AATAATTTTT 0.814273 -22 ATTTATTTTACAATTTTTGG 4 1 1 ATTTATTTTA 0.730202 -57 TAATTACATTAATTATTTATTGTTTTTTAT 9 212 1 AATTATTTAT 0.486528 -89 TTGTAATTGTAATAATTTTATTTTTCTTTT 10 12 1 AATAATTTTA 0.776372 -157 CATTTTTAGCATTAATTTTTAAATTTCTTT 10 94 0 ATTAATTTTT 0.848743 -75 CATTAATTAAAATAATTTTAATTAAT 13 7 0 AATAATTTTA 0.776372 -82 ATTGATAAGGATTAATTTATATTT 15 5 0 ATTAATTTAT 0.663044 -255 AAAATCTACAAATAATTTTATTTTTTACTA 15 224 1 AATAATTTTA 0.776372 -36 TTTATACTTTATTTATTTATAATTTATACT 16 52 1 ATTTATTTAT 0.54686 -37 TTTTTCTCATATTTATTTTTTACTTTTATT 17 46 0 ATTTATTTTT 0.775119 -129 TGAAAGTAAGAATAATTTTTAACCTTAATA 22 167 1 AATAATTTTT 0.814273 -134 TTGATTTTTATTTATTTTAAATTTTTCAT 27 10 1 ATTTATTTTA 0.730202 -178 CTGTTCTAAAATTTATTTATACTAAAATCT 27 97 1 ATTTATTTAT 0.54686 -91 AATAATTTTATATATTTTTT 28 1 1 AATAATTTTA 0.776372 -300 TTACTCAAATATTAATTTTTAAACAAATAA 28 126 1 ATTAATTTTT 0.848743 -175 ACAAATATGAATTAATTTTAAGGTGGTAAT 33 92 1 ATTAATTTTA 0.815563 -22 ********** Masking position 5 Map Score: 15.2716 Number of sites scoring better than the average of aligned sites = 571 Number in coding regions = 404 Number in noncoding regions = 167 Number of orfs with sites within 600 bp upstream = 168 Fraction of orfs with sites within 600 bp upstream = 0.0269836 Motif number 14 AGATCCCATGGGGCTTTGCCCCGCGGGGGT 1 188 1 GGGCTTTGCC 0.923832 -113 ATCCCAATAGGGGTTTTCCCCATGGCAATA 7 79 0 GGGTTTTCCC 0.966118 -108 TTATAAGTTGGGGCTTTCAGCCCCAATTAA 11 113 1 GGGCTTTCAG 0.843349 -188 CTAACGGAATGGATTTCCGCTTAAATATTT 15 130 0 GGATTTCCGC 0.827503 -130 ATTTTTAATAGGACTTTCGCAGAGATAAAA 31 15 1 GGACTTTCGC 0.978816 -134 ACCCTAAATAGGACTTTCGCAGTTCATATA 31 92 0 GGACTTTCGC 0.978816 -57 TTTGTCAATAGGGTTTTCCC 32 1 0 GGGTTTTCCC 0.966118 -260 GGGTATCACAGGACTTTCACAGAAATAAAA 32 99 0 GGACTTTCAC 0.953504 -162 ********** Masking position 5 Map Score: 4.66381 Number of sites scoring better than the average of aligned sites = 69 Number in coding regions = 21 Number in noncoding regions = 48 Number of orfs with sites within 600 bp upstream = 31 Fraction of orfs with sites within 600 bp upstream = 0.00497912 Motif number 15 CTTTTTATTTTTTAATATCTATTTACTATAAAA 1 243 1 TTAATTTATT 0.564118 -58 ATTGTAATAATTTTATTTTTCTTTTTTTATTTT 10 17 1 TTTATTTCTT 0.786777 -152 TGGAAGATATTTAAATCTTTTTTATATTTCATC 11 216 1 TTAATTTTTT 0.564118 -85 ATATATTTTCTTTAATATTACTTCTCATTGGTG 14 16 0 TTAATTACTT 0.69349 -76 CATCATTACCTTGAGTCTCTCTTTTAACCTAAT 17 106 1 TTAGTTTCTT 0.742579 -69 AGCAAGGTCTTTTAATGTTTCTCT 19 2 0 TTAATTTCTC 0.945835 -107 TACAGCCCCTTTTAATGTCTCTTGGAGATATAC 21 33 0 TTAATTTCTT 0.955078 -69 AAATTTTAAATATCTCTCCCTATATTTT 23 6 1 TTAATTTCTC 0.945835 -54 ATTATTTTGTTTTTATTTATCTTAATTTGGTTT 24 47 1 TTTATTTCTT 0.786777 -38 CTCGAAAAATTTAAATATTGCTCATATATAAAA 26 57 0 TTAATTGCTC 0.835219 -133 ATATTGTTGGTTAAATCTATCTCGAAAAATTTA 26 77 0 TTAATTTCTC 0.945835 -113 TTTATTTATTTTAAATTTTTCATATTTTTATTT 27 17 1 TTAATTTCAT 0.660593 -171 TTTAAAATATTTTAAAATATCTTTTATCATTAT 28 152 0 TTAAATTCTT 0.676642 -149 TTAAAATATTTTAAAGTTTTCTTTAATATTGTT 28 170 1 TTAAGTTCTT 0.756182 -131 AATGTGAATGTTTAATTTGGCTCTATTTTCCTA 28 202 0 TTAATTGCTC 0.835219 -99 ** *** * **** Masking position 8 Map Score: 7.27346 Number of sites scoring better than the average of aligned sites = 238 Number in coding regions = 208 Number in noncoding regions = 30 Number of orfs with sites within 600 bp upstream = 28 Fraction of orfs with sites within 600 bp upstream = 0.00449727