AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00500_mjan_reg_100.orf -o00500_mjan_100.ace -a/home/amcguire/genomes/ORF_mjan.txt -z/home/amcguire/genomes/mjan.fna -g0.31 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.31 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: MJ0086 36 unspecified methyltransferase Input sequences: #1 MJ0085 134 iron transport periplasmic binding protein, putative (ceuE) #2 MJ0087 23 hemin permease (hemU) #3 MJ0090 80 collagenase (prtC) #4 MJ0091 95 Na+/Ca+ exchanger protein, putative #5 MJ0448 130 conserved hypothetical protein #6 MJ0555 300 endoglucanase (celM) #7 MJ0822 300 S-layer structural protein #8 MJ0869 119 DNA repair protein RAD51 (radA) #9 MJ0968 55 copper transporting P type ATPase (copA) #10 MJ1149 59 mutator MutT protein, putative (mutT) #11 MJ1334 214 UDP-glucose pyrophosphorylase (gtaB) #12 MJ1505 178 ATP dependent RNA helicase, putative #13 MJ1574 300 ATP-dependent RNA helicase, eIF-4A family, putative #14 MJ1605 37 glucose-6-phosphate isomerase #15 MJ1606 167 glycogen synthase (glgA) #16 MJ1610 233 glucoamylase (cga) #17 MJ1611 21 alpha-amylase (amyA) Motif number 1 TAAAAATTATATAAAAAATAGAAAAAAG 1 8 0 ATAAAAAATG 0.803083 -127 ATCAATATTCATAAAAATTATATAAAAAATA 1 19 0 ATAAAAATTT 0.835929 -116 TTAATATCTAATATATATTTTTCGGTAGTTT 1 74 0 ATATATATTT 0.751387 -61 TATATTAGATATTAAAAATTTTTGTTCATAT 1 90 1 ATTAAAAATT 0.939416 -45 TTCAAATATAATTTAAAATTTAAAAAAATTT 3 56 1 ATTTAAAATT 0.910589 -25 TTGCTTAAGTTTAAATATTATTGCAGAATAT 4 36 1 TTAAATATTT 0.682843 -60 TTTGTTATAGATTAAAAATTGGTGAATATTT 5 11 0 ATTAAAAATG 0.872385 -120 TAATCATCAAATAAATATTTTGTTATAGATT 5 29 0 ATAAATATTT 0.821479 -102 GTAGCATCAGATTTATATTTTCCCGCATTTG 5 73 0 ATTTATATTT 0.835148 -58 CATAACTGCTATAAAAAATATTTGGTGACAT 5 109 1 ATAAAAAATT 0.902268 -22 TTTCTTCACCATCAAAAATTTACCAAAATCT 6 111 0 ATCAAAAATT 0.783429 -190 CGACATTCCTTTTAAAAATCTCTTTAATTTC 6 138 0 TTTAAAAATT 0.878861 -163 TTAACTTATTTTCTAAAATCTCGACATTCCT 6 159 0 TTCTAAAATT 0.526437 -142 TAAAACATAAATCTAAAATAGTTGGATTAGG 6 244 1 ATCTAAAATG 0.51159 -57 ACAAAATTTAATTTATAATATCGCTCTATTA 7 145 0 ATTTATAATT 0.901779 -156 AGAATAGTAAATATATAATTGAGGAGGTGTA 8 14 0 ATATATAATG 0.707164 -106 TCTTAGGTTTTTATAAATTCTCTTCTTTTTG 8 42 1 TTATAAATTT 0.610679 -78 AGGGAGAGATATTTAAAATTT 10 1 0 ATTTAAAATT 0.910589 -59 TAAAAACTTCATTAAAAATATAGGGAGAGAT 10 22 0 ATTAAAAATT 0.939414 -38 ATTAAAATTTTATTTCCATTT 11 1 1 ATTAAAATTT 0.895351 -214 ATATAATGCATTAAAAAATGGAAATAAAATT 11 16 0 TTAAAAAATG 0.656143 -199 TATAGTAGGTATAAATAATTTGGTGATGATT 11 136 0 ATAAATAATT 0.89293 -79 TACCTACTATATTAATACTATATAATTGTAA 11 156 1 ATTAATACTT 0.810732 -59 CTCGTAATGAATAAATAATTTATTGGCAATA 12 19 1 ATAAATAATT 0.89293 -160 AAGTTATAAATTTAATATTCTAATGTCATAT 12 72 1 TTTAATATTT 0.783028 -107 TTTTTGCTACTTTTATAATTTTTAAAGAACA 12 139 1 TTTTATAATT 0.811172 -40 TAAAATTAATATTAATAATGGATATTTGAAC 13 19 0 ATTAATAATG 0.860391 -282 ATAAAAGAAATTTTAAAATATAGTGTCTTTC 13 58 0 TTTTAAAATT 0.826541 -243 TGGTGAAATCATTTAAAATTTAAATAACCAT 13 166 0 ATTTAAAATT 0.910589 -135 ATCTTGGATATTTAATATTGGGTAAACTGGT 13 193 0 TTTAATATTG 0.614054 -108 AGCATTAATCATTAAAAATTTATTTCCCAGT 13 237 1 ATTAAAAATT 0.939416 -64 CATAAACGTTATTTATACTGGGAAATAAATT 13 253 0 ATTTATACTG 0.553638 -48 TTATACTATATTTAAAAATCTAAATGATGAT 15 14 0 TTTAAAAATT 0.878861 -154 CCTTTCTAAGATTTATACTATATTTAAAAAT 15 26 0 ATTTATACTT 0.737767 -142 TTAGAAAGGTATAAAAACTATCTAATAGATA 15 48 1 ATAAAAACTT 0.739217 -120 ATCACAATGTTTTTATATTATCTAATTTAAA 15 80 0 TTTTATATTT 0.703292 -88 GATTTTAACAATAAATATTATATTATGATGT 15 117 0 ATAAATATTT 0.821207 -51 GATATATTTTTTTAATATTCTATTGCCTTTT 16 211 0 TTTAATATTT 0.783028 -23 ********* * Masking position 5 Map Score: 44.1512 Number of sites scoring better than the average of aligned sites = 1924 Number in coding regions = 1306 Number in noncoding regions = 618 Number of orfs with sites within 600 bp upstream = 468 Fraction of orfs with sites within 600 bp upstream = 0.0751686 Motif number 2 CTTTTTTCTATTTTTTATATAATTTTTATGAATA 1 9 1 TTTTTTTATT 0.930461 -126 TAGATATTAAAAATTTTTGTTCATATCATATAGCCT 1 95 1 ATTTTTTTAT 0.625506 -40 TTAGAAATTTTTTTAAATTTTAAATTATAT 3 61 0 ATTTTTTATT 0.982508 -20 GATGAACTGAAAATTTTGCTTAAGTTTAAATATTAT 4 21 1 ATTTTGTTTT 0.856831 -75 CATCAAATAAATATTTTGTTATAGATTAAAAATTGG 5 20 0 ATTTTGTAAT 0.857828 -111 GGATTGAGAATTATTATGGTATGCTTTAGACATTTC 6 41 1 TTTATGTATT 0.586826 -260 TGGAGTGTTAAGATTTTGGTAAATTTTTGATGGTGA 6 101 1 ATTTTGTATT 0.972372 -200 AAACCCCCACATATTTTTATAAGTTTCTACTAAATA 7 39 1 ATTTTTTATT 0.982687 -262 AAACATTTGTAACTTTTTTTATTTTTTAATAGAGCG 7 119 1 ATTTTTTATT 0.982713 -182 TGAATGAAAAATTTTATTATATCTTTGTTATACAAA 7 171 0 ATTATTTATT 0.906926 -130 TTTATCACCTAAGTTTTTGTATTGTTATTTGATTGA 7 273 0 ATTTTTTATT 0.982713 -28 TACTATTCTTAGGTTTTTATAAATTCTCTTCTTTTT 8 36 1 ATTTTTTATC 0.909096 -84 ATTTTTAATGAAGTTTTTATATATATAAGTGAGAGC 10 34 1 ATTTTTTAAT 0.906788 -26 TGACTTCAATAGCTTTTTTTAACTTTTCCTCATCTT 11 48 1 ATTTTTTATT 0.982713 -167 TTATTAAATTAATTTATGTTACAATTATATAGTATT 11 169 0 ATTATGTATT 0.857828 -46 TCCCTTTAGTAAATTTTTATTAAATTAATTTATGTT 11 185 0 ATTTTTTTTT 0.905226 -30 GTCGATATCCATATTTTTGTAAAGTTATAAATTTAA 12 51 1 ATTTTTTATT 0.982677 -128 ACTAAAAACTATTTTTTGCTACTTTTATAATTTTTA 12 127 1 ATTTTGTATT 0.972375 -52 ATCTATTAGATAGTTTTTATACCTTTCTAAGATTTA 15 42 0 TTTTTTTATT 0.930463 -126 ATATATCACAATGTTTTTATATTATCTAATTTAAAG 15 79 0 ATTTTTTATC 0.909098 -89 ACCTACAATATTCTTTTTATAGCCTTCACAGCCATA 16 168 0 TTTTTTTATT 0.930463 -66 ACGATATATTTTTTTAATATTCTATTGCCTT 16 213 0 ATTTTTTATT 0.982712 -21 * ***** ** ** Masking position 7 Map Score: 43.4738 Number of sites scoring better than the average of aligned sites = 259 Number in coding regions = 175 Number in noncoding regions = 84 Number of orfs with sites within 600 bp upstream = 102 Fraction of orfs with sites within 600 bp upstream = 0.0163829 Motif number 3 AGATATTAAAAATTTTTGTTCATATCATATAGCCTAAAATG 1 96 1 AATTTTAATA 0.542476 -39 TTAGAAATTTTTTTAAATTTTAAATTATATTTGAAG 3 55 0 AATTTAAATT 0.646848 -26 ACTTAAGCAAAATTTTCAGTTCATCCATATTGTAT 4 5 0 AATTTTAATT 0.952482 -91 AAATTAATTAAAGTTTGTTTTTGAATATATTCTGCAATAAT 4 52 0 AATTTTAATT 0.95283 -44 TATAGCAGTTATGTTTGTGTAGCATCAGATTTATATTTTCC 5 81 0 ATTTTTAATT 0.968803 -50 ATTTTGGTAAATTTTTGATGGTGAAGAAATTAAAGAGATTT 6 113 1 ATTTTGAATT 0.755392 -188 TCAATTTTCTCAATCTTTATAAGATTAAATTAACTTATTTT 6 178 0 CATCTTAATT 0.477287 -123 GGTAAGTGTCCAATTTCCTTTCGTCAATTTTCTCAATCTTT 6 201 0 CATTTTATTT 0.371176 -100 TTTCTACTAAATATTTGGATATATCAAAATTAATTTTTATC 7 62 1 ATTTTTAATT 0.948363 -239 TGTTTGCAACTTTTTTAAATGGATAAAAATTAATTTTGATA 7 83 0 TTTTTTAATT 0.677365 -218 AACTTTTTTTATTTTTTAATAGAGCGATATTATAAATTAAA 7 129 1 ATTTTTAATT 0.9688 -172 AAATTTTATTATATCTTTGTTATACAAAATTTAATTTATAA 7 158 0 ATTCTTAATT 0.837254 -143 ATATAATAAAATTTTTCATTCAGAAACTATTGTTATAACCG 7 185 1 ATTTTTCATT 0.845082 -116 TATATTTACTATTCTTAGGTTTTTATAAATTCTCTTCTTTT 8 30 1 ATCTTTAATT 0.727958 -90 ATCAATTGTCATATTTGACTATATAAAGATTTTGGTTTATA 8 87 0 ATTTTTAATT 0.966952 -33 TCCCTTTAGTAAATTTTTATTAAATTAATTTATGTTACAAT 11 180 0 AATTTTATTT 0.66787 -35 CGATATCCATATTTTTGTAAAGTTATAAATTTAATATTCTA 12 53 1 ATTTTAAATT 0.841639 -126 ACTAAAAACTATTTTTTGCTACTTTTATAATTTTTAAAGAA 12 127 1 ATTTTTAAAT 0.645803 -52 TAATTTTAACAACTTTGAAAGACACTATATTTTAAAATTTC 13 42 1 AATTTAAATT 0.775905 -259 TTTTATAATCATATTTCCTTTTATGGATATTATAGAGCGGT 13 120 1 ATTTTTAATT 0.968799 -181 CTTTCCACTTTATGTAATAAAAGATTTGGGGGGAAA 14 6 1 CATTTTAATT 0.844557 -32 ATATATCACAATGTTTTTATATTATCTAATTTAAAGTATCT 15 74 0 ATTTTTTATT 0.667003 -94 ACGATATATTTTTTTAATATTCTATTGCCTTTTGCG 16 208 0 ATTTTTCATT 0.845284 -26 ** *** * * *** Masking position 6 Map Score: 23.9815 Number of sites scoring better than the average of aligned sites = 315 Number in coding regions = 235 Number in noncoding regions = 80 Number of orfs with sites within 600 bp upstream = 86 Fraction of orfs with sites within 600 bp upstream = 0.013813 Motif number 4 TCAATATTCATAAAAATTATATAAAAAATAGA 1 17 0 TAAAATATAT 0.490943 -118 AATAATTCAAAAAATGTGATAGT 2 6 1 TTCAAAATGT 0.657038 -18 AATTTAAAATTTAAAAAAATTTCTAA 3 65 1 TTAAAAATTT 0.931981 -16 AAAAACAAACTTTAATTAATTTAGTAGGGATA 4 71 1 TTTAAAATTT 0.852644 -25 TTATTTGATGATTAACTAATTTATCCTCAAAT 5 46 1 ATTAAAATTT 0.568614 -85 ATAACTGCTATAAAAAATATTTGGTGACATC 5 110 1 TAAAATATTT 0.778129 -21 ATCCTATCTCTAAAACCAATGTGCTGAACTTT 6 13 0 TAAAAAATGT 0.865358 -288 GGTGAAGAAATTAAAGAGATTTTTAAAAGGAA 6 132 1 TTAAAGATTT 0.68696 -169 AAGAGATTTTTAAAAGGAATGTCGAGATTTTA 6 145 1 TAAAAAATGT 0.865358 -156 CTTTATAAGATTAAATTAACTTATTTTCTAAA 6 173 0 TTAAAAACTT 0.650453 -128 TTAAATGGATAAAAATTAATTTTGATATATCC 7 78 0 AAAAAAATTT 0.805273 -223 AGCGATATTATAAATTAAATTTTGTATAACAA 7 151 1 TAAATAATTT 0.465473 -150 CCTCATCTTCTTCAATGAATTTTAGTTTCACA 11 75 1 TTCAAAATTT 0.844026 -140 ATATAGTAGGTATAAATAATTTGGTGATGATT 11 136 0 TATAAAATTT 0.884613 -79 TAAATTTTTATTAAATTAATTTATGTTACAAT 11 180 0 TTAAAAATTT 0.931981 -35 TCTCGTAATGAATAAATAATTTATTGGCAATA 12 18 1 AATAAAATTT 0.635889 -161 TATTAGATACTAAAAACTATTTTTTGCTACTT 12 119 1 TAAAATATTT 0.778129 -60 TCAAAGTTGTTAAAATTAATATTAATAATGGA 13 28 0 TAAAAAATAT 0.833115 -273 ATAATCATAATAAAAGAAATTTTAAAATATAG 13 66 0 TAAAAAATTT 0.947792 -235 TAAAACTGACTTCAATAAATTTGGAGGATAAT 13 93 0 TTCAAAATTT 0.844026 -208 TTATTTAAATTTTAAATGATTTCACCAGTTTA 13 170 1 TTTAAGATTT 0.480985 -131 ATTAATCATTAAAAATTTATTTCCCAGTATAA 13 240 1 AAAAATATTT 0.444069 -61 TATTTCCCAGTATAAATAACGTTTATGGAAAA 13 257 1 TATAAAACGT 0.269332 -44 TTCAGATTTTAACAATAAATATTATATTATGA 15 120 0 AACAAAATAT 0.309927 -48 AATTACCCCTTTAAAGCAATTTCAATTTCAGA 15 146 0 TTAAAAATTT 0.931981 -22 CTCTTATACATATAAGGAATTTTGATGCCAAA 16 103 0 TATAAAATTT 0.884613 -131 GTGAAGGCTATAAAAAGAATATTGTAGGTTTT 16 175 1 TAAAAAATAT 0.833115 -59 CAATAGAATATTAAAAAAATATATCGT 16 217 1 TTAAAAATAT 0.790261 -17 ***** ***** Masking position 4 Map Score: 28.2599 Number of sites scoring better than the average of aligned sites = 1208 Number in coding regions = 898 Number in noncoding regions = 310 Number of orfs with sites within 600 bp upstream = 291 Fraction of orfs with sites within 600 bp upstream = 0.0467395 Motif number 5 TTTTTCTATTTTTTATATAATTTTTATGAAT 1 13 1 TTTATATAAT 0.829424 -122 CAAAAATTTTTAATATCTAATATATATTTTT 1 83 0 TATATCTAAT 0.929168 -52 TCTTTTTTATATAATGAGGTCATAT 3 5 1 TTTATATAAT 0.829424 -76 ATTTTATACTTCAAATATAATTTAAAATTTA 3 47 1 TCAATATAAT 0.500735 -34 ATTTCTGGAGTCGTATATAATTACAAAGATG 6 72 1 TCTATATAAT 0.916359 -229 ATACAAAATTTAATTTATAATATCGCTCTAT 7 147 0 TATTTATAAT 0.665185 -154 TTCGACAAACTACTATATAAATCTTACGATA 7 231 0 TATATATAAA 0.790203 -70 TAAGAATAGTAAATATATAATTGAGGAGGTG 8 16 0 AATATATAAT 0.790203 -104 GCTATTGAAGTCATATATAATGCATTAAAAA 11 30 0 TCTATATAAT 0.916359 -185 TATTTATACCTACTATATTAATACTATATAA 11 150 1 TATATATTAA 0.395292 -65 ACTATATTAATACTATATAATTGTAACATAA 11 161 1 TATATATAAT 0.955952 -54 AAATAGTTTTTAGTATCTAATAGAACTTTTG 12 110 0 TATATCTAAT 0.929168 -69 AAGGTATAAAAACTATCTAATAGATACTTTA 15 53 1 AATATCTAAT 0.694811 -115 AATGTTTTTATATTATCTAATTTAAAGTATC 15 75 0 TATATCTAAT 0.929168 -93 TAACAATAAATATTATATTATGATGTACATA 15 112 0 TATATATTAT 0.790203 -56 ** ******** Masking position 10 Map Score: 15.2331 Number of sites scoring better than the average of aligned sites = 144 Number in coding regions = 95 Number in noncoding regions = 49 Number of orfs with sites within 600 bp upstream = 59 Fraction of orfs with sites within 600 bp upstream = 0.00947639 Motif number 6 TATATAATTTTTATGAATATTGATGTATTT 1 26 1 TTATGAATAT 0.93169 -109 AATGAGGTCATATTGGTTATTGCTATTTTA 3 23 1 TATTGGTTAT 0.759662 -58 TAAAGTTTGTTTTTGAATATATTCTGCAAT 4 55 0 TTTTGAATAT 0.876319 -41 TCTACTAAATATTTGGATATATCAAAATTA 7 64 1 ATTTGGATAT 0.84759 -237 AATAATTTGGTGATGATTATGAAAAAGTAT 11 124 0 TGATGATTAT 0.698667 -91 CTTTACAAAAATATGGATATCGACATATTG 12 45 0 ATATGGATAT 0.910745 -134 TTAATATTAATAATGGATATTTGAACGCTC 13 15 0 TAATGGATAT 0.893498 -286 ATTTCTTTTATTATGATTATCCTCCAAATT 13 78 1 TTATGATTAT 0.908453 -223 ATAAAAGGAAATATGATTATAAAACTGACT 13 114 0 ATATGATTAT 0.779073 -187 ATATTTCCTTTTATGGATATTATAGAGCGG 13 130 1 TTATGGATAT 0.967822 -171 GAGCGGTAGCTTATGGTTATTTAAATTTTA 13 154 1 TTATGGTTAT 0.956374 -147 AGATTTGTAATCTTGGATATTTAATATTGG 13 203 0 TCTTGGATAT 0.785285 -98 ********** Masking position 9 Map Score: 9.71838 Number of sites scoring better than the average of aligned sites = 328 Number in coding regions = 293 Number in noncoding regions = 35 Number of orfs with sites within 600 bp upstream = 38 Fraction of orfs with sites within 600 bp upstream = 0.00610344 Motif number 7 CATATAGCCTAAAATGGTGACAAT 1 121 1 AAAATGGTGA 0.963937 -14 TATAGATTAAAAATTGGTGAATATTT 5 7 0 AAATTGGTGA 0.977211 -124 ACAAAATATTTATTTGATGATTAACTAATT 5 37 1 TATTTGATGA 0.794538 -94 CTATAAAAAATATTTGGTGACATC 5 117 1 TATTTGGTGA 0.921871 -14 AAGATTGAGAAAATTGACGAAAGGAAATTG 6 202 1 AAATTGACGA 0.766548 -99 CTACTATTTAAAAAAGGTGAGAGATT 6 285 1 AAAAAGGTGA 0.808197 -16 AGGTATAAATAATTTGGTGATGATTATGAA 11 131 0 AATTTGGTGA 0.957435 -84 AATATTGGGTAAACTGGTGAAATCATTTAA 13 181 0 AAACTGGTGA 0.940044 -120 TTTAAAAATCTAAATGATGATATT 15 5 0 TAAATGATGA 0.82128 -163 ********** Masking position 2 Map Score: 5.46883 Number of sites scoring better than the average of aligned sites = 155 Number in coding regions = 107 Number in noncoding regions = 48 Number of orfs with sites within 600 bp upstream = 64 Fraction of orfs with sites within 600 bp upstream = 0.0102795 Motif number 8 TTTTTAATATCTAATATATATTTTTCGGTA 1 78 0 CTAATATATA 0.798298 -57 TCTTATCCCTACTAAATTAATTAAAGTT 4 78 0 CTACTAAATT 0.911934 -18 AATACATTAACTACTATTTAAAAAAGGTGA 6 275 1 CTACTATTTA 0.864209 -26 TTATAAGTTTCTACTAAATATTTGGATATA 7 55 1 CTACTAAATA 0.927313 -246 CTTCGACAAACTACTATATAAATCTTACGA 7 233 0 CTACTATATA 0.975829 -68 TTATTTATACCTACTATATTAATACTATAT 11 149 1 CTACTATATT 0.970387 -66 TACTATATTAATACTATATAATTGTAACAT 11 160 1 ATACTATATA 0.888265 -55 TCTAAGATTTATACTATATTTAAAAATCTA 15 23 0 ATACTATATT 0.865818 -145 TGCGAAAAACCTACAATATTCTTTTTATAG 16 182 0 CTACAATATT 0.837812 -52 ********** Masking position 6 Map Score: 8.93754 Number of sites scoring better than the average of aligned sites = 55 Number in coding regions = 40 Number in noncoding regions = 15 Number of orfs with sites within 600 bp upstream = 17 Fraction of orfs with sites within 600 bp upstream = 0.00273049 Motif number 9 TAGATATTAAAAATTTTTGTTCATATCATATAG 1 95 1 AAATTTTTCA 0.745232 -40 ACTTAAGCAAAATTTTCAGTTCATCCATATTGT 4 13 0 AATTTTCTCA 0.768954 -83 AATATTCACCAATTTTTAATCTATAACAAAATA 5 12 1 AATTTTTTTA 0.50611 -119 CGACTCCAGAAATGTCTAAAGCATACCATAATA 6 52 0 AATGTCTACA 0.672684 -249 AAATCTCTTTAATTTCTTCACCATCAAAAATTT 6 121 0 AATTTCTACA 0.849635 -180 TTAAAGAAAAAATTTCTAATTCATTATAAACCC 7 12 1 AATTTCTTCA 0.960674 -289 GATATAATAAAATTTTTCATTCAGAAACTATTG 7 184 1 AATTTTTTCA 0.950949 -117 ATTAAAATTTTATTTCCATTTTTTAATG 11 6 1 AATTTTATCA 0.901011 -209 TTCTTCAATGAATTTTAGTTTCACATTTGCACT 11 82 1 AATTTTATCA 0.901011 -133 ACTTTCCTCGAAATACTTTTTCATAATCATCAC 11 112 1 AAATACTTCA 0.544113 -103 TTATTAAATTAATTTATGTTACAATTATATAGT 11 172 0 AATTTATTCA 0.731753 -43 CCCTTTAGTAAATTTTTATTAAATTAATTTATG 11 187 0 AATTTTTTAA 0.50611 -28 ATTGCCAATAAATTATTTATTCATTACGAGAGT 12 16 0 AATTATTTCA 0.862596 -163 TTAATATTCTAATGTCATATGCAAACACAAAAG 12 83 1 AATGTCATCA 0.806631 -96 TTAAATTTTAAATGATTTCACCAGTTTACCCAA 13 174 1 AATGATTACA 0.345613 -127 CCTTTAAAGCAATTTCAATTTCAGATTTTAACA 15 138 0 AATTTCATCA 0.919802 -30 ATAAAATTACACCTCCAAGCGTAAGCG 16 5 1 AATTACATCA 0.78786 -229 ******* * ** Masking position 2 Map Score: 11.0386 Number of sites scoring better than the average of aligned sites = 600 Number in coding regions = 534 Number in noncoding regions = 66 Number of orfs with sites within 600 bp upstream = 57 Fraction of orfs with sites within 600 bp upstream = 0.00915516 Motif number 10 ACTATCACATTTTTTGAATTAT 2 12 0 CTATCACTTT 0.728321 -12 GATTTATATTTTCCCGCATTTGAGGATAAAT 5 64 0 TTCCCGCTTT 0.691852 -67 AATCTCTCACCTTTTTTAAATAGT 6 287 0 CTCTCACTTT 0.87947 -14 ACTTTATCACCTAAGTTTTTGTAT 7 287 0 TTATCACTAA 0.534484 -14 GCTCCCACAATAATTCTTTATA 9 2 1 CTCCCACATA 0.888959 -54 AATTACCCCATTAATTAAATATA 9 43 0 TTACCCCTTA 0.873997 -13 TTTTAAATATCTCTCCCTATATTTTTAATGA 10 14 1 CTCTCCCATA 0.870338 -46 GCTCTCACTTATATATATAAAA 10 48 0 CTCTCACTAT 0.721775 -12 CCTCTCCCTTTAGTAAATTTTT 11 203 0 CTCTCCCTTA 0.949698 -12 CTTTCCACTTTATGTAATAAAA 14 2 1 TTTCCACTTA 0.611051 -36 ATTTCCCCCCAAATCTTTTATTA 14 25 0 TTCCCCCAAA 0.704706 -13 AATTACCCCTTTAAAGCAATTTC 15 155 0 TTACCCCTTA 0.873999 -13 ******* *** Masking position 2 Map Score: 1.13832 Number of sites scoring better than the average of aligned sites = 435 Number in coding regions = 367 Number in noncoding regions = 68 Number of orfs with sites within 600 bp upstream = 68 Fraction of orfs with sites within 600 bp upstream = 0.0109219 Motif number 11 ********** No masking Map Score: -4.4521e-13 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 12 ********** No masking Map Score: -4.4521e-13 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 13 ********** No masking Map Score: -4.4521e-13 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0