AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00910_mjan_reg_100.orf -o00910_mjan_100.ace -a/home/amcguire/genomes/ORF_mjan.txt -z/home/amcguire/genomes/mjan.fna -g0.31 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.31 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 MJ0020 300 asparaginase (ansA) #2 MJ0685 68 nitrogenase reductase (nifH2) #3 MJ0823 300 CODH nickel-insertion accessory protein CooC (cooC) #4 MJ0879 149 nitrogenase iron protein (nifH) #5 MJ1054 300 UDP-glucose dehydrogenase, putative #6 MJ1116 136 asparagine synthetase (asnB) #7 MJ1345 300 O-linked GlnNAc transferase #8 MJ1346 87 glutamine synthetase (glnA) #9 MJ1351 300 glutamate synthase (gltB) #10 MJ1352 300 NH(3)-dependent NAD+ synthetase (nadE) Motif number 1 AAGTTCCTTAATATATTTAAATTGCAT 1 8 1 TTAATATATT 0.86767 -293 TTAAAGCTACTTAATATATTTATGGCGGAT 1 105 1 TTAATATATT 0.86767 -196 CTGACGCCACTTTTTATTTTGCAAATATTA 1 178 1 TTTTTATTTT 0.962548 -123 CAAATATTAATTTATATATTTAAATATAAA 1 199 1 TTTATATATT 0.943862 -102 ATCATATAAATTTTTATATTTAAATATATA 1 211 0 TTTTTATATT 0.969224 -90 GATAGCTATCTTTTTATAATTTTTATACCC 1 238 1 TTTTTATAAT 0.877658 -63 TATCGTAAGATTTATATAGTAGTTTGTCGA 3 44 0 TTTATATAGT 0.58343 -257 ATGAAAAATTTTATTATATCTTTGTTATAC 3 101 1 TTATTATATC 0.841797 -200 AAAATTTAATTTATAATATCGCTCTATTAA 3 131 1 TTATAATATC 0.590229 -170 TTTGTAACTTTTTTTATTTTTTAATAGAGC 3 151 0 TTTTTATTTT 0.962548 -150 ACAAGTGTTATTTTTATTTTGTTATTT 4 8 0 TTTTTATTTT 0.962548 -142 ACTTGTTTCTTTTTTATTTCTTTTATAATT 4 32 1 TTTTTATTTC 0.917595 -118 TTTAATAACTTTTTAATTATAAAAGAAATA 4 46 0 TTTTAATTAT 0.613127 -104 ATATTAGCAGTTTATTTATTAACACTATAT 4 97 1 TTTATTTATT 0.587165 -53 TTCACCAAAATTTTTATTATAAAATATTAT 4 125 0 TTTTTATTAT 0.85411 -25 ATAGCATTACTTATAATTTTCGTTATCAAT 5 147 0 TTATAATTTT 0.730675 -154 TTGTATAATATTATTATATTTCTCTTACAT 5 252 0 TTATTATATT 0.924705 -49 ATCCCCTGAGTTTATTTATTAATAATTGTA 5 277 0 TTTATTTATT 0.587165 -24 AAAATTTTAATTTAAATATCTTAATAAAGA 6 50 0 TTTAAATATC 0.663542 -87 GATATTTAAATTAAAATTTTGCAAATATTT 6 60 1 TTAAAATTTT 0.591589 -77 ATACCTTATTTTTTAATATTAGCTAACACA 6 107 0 TTTTAATATT 0.895016 -30 TCCCAATATTTGTTTATTTTGCATTTCC 7 9 0 TGTTTATTTT 0.770778 -292 TATAATTAAATTTTTATATTTATAATTATA 7 62 1 TTTTTATATT 0.969224 -239 GATAGAAAAATTTATATTTTACACTAAAAT 7 198 1 TTTATATTTT 0.932072 -103 TTTCGTTAAATTATTATTACTATGATATTA 7 240 0 TTATTATTAC 0.497276 -61 ATTTTTATATTTTAATTTAAA 8 2 1 TTTTTATATT 0.969224 -86 TTTTAATCTTTGTTTATTTCCAAGGTCTTG 9 249 0 TGTTTATTTC 0.592983 -52 CTTCCTCATGTTTTTATTTTTAATCTTTTA 9 274 0 TTTTTATTTT 0.962548 -27 TATAGAATTGTTTATATAATAGGAATCATA 10 274 1 TTTATATAAT 0.792552 -27 ********** Masking position 7 Map Score: 33.801 Number of sites scoring better than the average of aligned sites = 2243 Number in coding regions = 1461 Number in noncoding regions = 782 Number of orfs with sites within 600 bp upstream = 522 Fraction of orfs with sites within 600 bp upstream = 0.083842 Motif number 2 ACTTCGCAGGAATAAAATCTTTAAAGGAAAGTT 1 49 0 AAAATCTTTA 0.77595 -252 TATTTTGCAAATATTAATTTATATATTTAAATA 1 192 1 ATAATTTATA 0.94838 -109 GATAGCTATCATATAAATTTTTATATTTAAATA 1 215 0 AAAATTTTTA 0.915639 -86 TAATTTTTATACCCTAATCTATAACAATCTCTA 1 254 1 ATAATCTATA 0.854289 -47 TGTTATACAAAATTTAATTTATAATATCGCTCT 3 123 1 ATAATTTATA 0.948378 -178 GGATATATCAAAATTAATTTTTATCCATTTAAA 3 194 0 ATAATTTTTA 0.952372 -107 ATTTTGATATATCCAAATATTTAGTAGAAACTT 3 213 1 AAAATATTTA 0.741483 -88 ATAAACCCCCACATATTTTTATAAGTTTCTACT 3 235 0 AATTTTTATA 0.513198 -66 ATGAATTAGAAATTTTTTCTTTAAAAAATCTTA 3 269 1 ATTTTCTTTA 0.402843 -32 AAAAGAAACAAGTGTTATTTTTATTTTGTTATT 4 12 0 ATTATTTTTA 0.852924 -138 TAATATTATTAATGTATTATTTAATGATTTAAT 4 70 0 ATATTATTTA 0.658262 -80 TTAACACTATATAATATTTTATAATAAAAATTT 4 115 1 ATATTTTATA 0.870013 -35 AATTATTCACCAAAATTTTTATTATAAAATA 4 129 0 AAAATTTTTA 0.91564 -21 TAAAACCTCTAAGGTTATTTATAATAAATTGAT 6 13 1 ATTATTTATA 0.841975 -124 TATTTGCAAAATTTTAATTTAAATATCTTAATA 6 54 0 ATAATTTAAA 0.749639 -83 TTTTAAATATACCTTATTTTTTAATATTAGCTA 6 112 0 ATATTTTTTA 0.879365 -25 GGACTTTTATAATTAAATTTTTATATTTATAAT 7 55 1 AAAATTTTTA 0.915632 -246 ATTCACAGATAGAAAAATTTATATTTTACACTA 7 191 1 AAAATTTATA 0.908852 -110 ATTTTACACTAAAATAATTTTAATAAATAATAT 7 213 1 ATAATTTTAA 0.765061 -88 TATTATTACTATGATATTATTTATTAAAATTAT 7 226 0 ATATTATTTA 0.658267 -75 ATTTTTATATTTTAATTTAAATTGAATATAC 8 9 1 ATAATTTAAA 0.749639 -79 ATATACCGTAAATTATATATATATGGAAGTAGG 8 36 1 AATATATATA 0.43318 -52 AGATTGAACGAATTTAATTTATAGAATTGTTTA 10 255 1 ATAATTTATA 0.948378 -46 * ********* Masking position 8 Map Score: 23.3147 Number of sites scoring better than the average of aligned sites = 981 Number in coding regions = 612 Number in noncoding regions = 369 Number of orfs with sites within 600 bp upstream = 335 Fraction of orfs with sites within 600 bp upstream = 0.0538066 Motif number 3 ATAGCTATCTTTTTATAATTTTTATACCCTAATCT 1 239 1 TTAATTTTAT 0.791949 -62 AAAAATTTTATTATATCTTTGTTATACAAAATTTA 3 104 1 TTACTTTTAT 0.85934 -197 TTGCAAACATTTGTAACTTTTTTTATTTTTTAATA 3 155 0 TTACTTTTTA 0.937775 -146 TTACAAATGTTTGCAACTTTTTTAAATGGATAAAA 3 174 1 TTACTTTTAA 0.969969 -127 AAATTTTTTCTTTAAAAAATCTTAAGGGATAAA 3 278 1 TTAAATTTAA 0.666012 -23 TCTTTTATAATTAAAAAGTTATTAAATCATTAAAT 4 50 1 TTAATTTTAA 0.732655 -100 GGAAATCTATTTAAAACCTCTTTAATCTTGTGATA 5 19 0 TTACTCTTAA 0.642851 -282 TATAATAATATTATACAATTATTAATAAATAAACT 5 264 1 TTAATTTTAA 0.952795 -37 AATAAATTGATTTAATCTTTATTAAGATATTTAAA 6 35 1 TTACTTTTAA 0.970175 -102 TCCATATTATTTCCACATTAGTTTATTTAAAGTTA 7 136 0 TTAATATTTA 0.499863 -165 GGAAACTTACTTCCAGAATTATTCAATCAAA 8 67 1 TTAATTTTCA 0.808822 -21 CTCCTCAAGGTTTAATCTTTATGAATGGAGATATT 9 45 1 TTACTTTGAA 0.826041 -256 TTTTTAATCTTTTAATCTTTGTTTATTTCCAAGGT 9 253 0 TTACTTTTTA 0.937779 -48 CGAATTTAATTTATAGAATTGTTTATATAATAGGA 10 263 1 TTAATTTTTA 0.903741 -38 ** * * ** **** Masking position 5 Map Score: 11.5437 Number of sites scoring better than the average of aligned sites = 382 Number in coding regions = 303 Number in noncoding regions = 79 Number of orfs with sites within 600 bp upstream = 77 Fraction of orfs with sites within 600 bp upstream = 0.0123675 Motif number 4 TAATTCATTATAAACCCCCACATATTTTTATAAGTT 3 241 0 TAAACCCATT 0.98652 -60 TTAAATCCCCTGAGTTTATTTATTAAT 5 284 0 TAAACCCATT 0.98652 -17 TTTAAAACCTCTAAGGTTATTTATAATA 6 3 1 TAAACTCATT 0.890976 -134 AATTTAATTATAAAAGTCCATAAATTACTTGTTTAT 7 38 0 TAAATCCATT 0.966223 -263 CATAAAACAATTAATACCCCAATCTTATTAACTTTA 7 108 1 TTAACCCATT 0.978549 -193 ATATGCGATTTTAATCCCCCTATTTTACGAATTTCG 7 265 0 TTAACCCATT 0.978549 -36 GATTTCACTTCCTCATGTTTTTATTTTTA 9 282 0 TTCATCCATT 0.825669 -19 ATGAGTTGTGTAAAATTCCAGAGCTTAAGGTGTGTG 10 213 1 TAAATCCATT 0.966223 -88 **** *** * ** Masking position 12 Map Score: 6.88826 Number of sites scoring better than the average of aligned sites = 43 Number in coding regions = 36 Number in noncoding regions = 7 Number of orfs with sites within 600 bp upstream = 10 Fraction of orfs with sites within 600 bp upstream = 0.00160617 Motif number 5 GATAGCTATCTTTTTATAATTTTTATACCCT 1 238 1 TTTTATAATT 0.629676 -63 TTCCTTTTAGTGTTTATAAATGGTGATGTC 2 10 0 TTTTATAAAT 0.942697 -59 CTAAAAGGAATTATTATTAATTAATAATACT 2 31 1 TATTATTAAT 0.539164 -38 TAATAGAGCGATATTATAAATTAAATTTTGT 3 129 0 AATTATAAAT 0.673503 -172 AATATCGCTCTATTAAAAAATAAAAAAAGTT 3 145 1 TTTAAAAAAT 0.72042 -156 CCCCCACATATTTTTATAAGTTTCTACTAAA 3 232 0 TTTTATAAGT 0.588381 -69 AATTTCTAATTCATTATAAACCCCCACATAT 3 252 0 TATTATAAAC 0.665571 -49 AGAAATTTTTTCTTTAAAAAATCTTAAGGGA 3 276 1 TTTTAAAAAA 0.532226 -25 AATAACTTTTTAATTATAAAAGAAATAAAAA 4 42 0 TATTATAAAA 0.815418 -108 TATTATATAGTGTTAATAAATAAACTGCTAA 4 100 0 TTTAATAAAT 0.887601 -50 ACCAAAATTTTTATTATAAAATATTATATAG 4 121 0 TATTATAAAA 0.815353 -29 TTTAATCTTGTGATAATAAATTC 5 3 0 TATAATAAAT 0.909043 -298 GATTTCCAAGTAATAGTAAATTCGATACGGT 5 47 1 TATAGTAAAT 0.605054 -254 CTCCAACAATTAATTGTAAATATAGCATTAC 5 167 0 TATTGTAAAT 0.761405 -134 ATTATACAATTATTAATAAATAAACTCAGGG 5 273 1 TTTAATAAAT 0.887425 -28 TTAAATCAATTTATTATAAATAACCTTAGAG 6 19 0 TATTATAAAT 0.954159 -118 TGTTAGCTAATATTAAAAAATAAGGTATATT 6 109 1 TTTAAAAAAT 0.72042 -28 AAATAAGGTATATTTAAAAAT 6 126 1 TTTTAAAAAT 0.843048 -11 TATAAAAATTTAATTATAAAAGTCCATAAAT 7 49 0 TATTATAAAA 0.815418 -252 CGCTATAATATAATTATAAATATAAAAATTT 7 69 0 TATTATAAAT 0.954166 -232 ACTAAAATAATTTTAATAAATAATATCATAG 7 220 1 TTTAATAAAT 0.885676 -81 AATATCATAGTAATAATAATTTAACGAAATT 7 241 1 TATAATAATT 0.508553 -60 CAAGGTTTAATCTTTATGAATGGAGATATTG 9 50 1 TTTTATGAAT 0.578149 -251 AAAGATTAAAAGATTAAAAATAAAAACATGA 9 268 1 AATTAAAAAT 0.402685 -33 TGATGCCAAATCATTAAAAATTGAGAATGGT 10 43 1 TATTAAAAAT 0.871841 -258 * ********* Masking position 4 Map Score: 26.6106 Number of sites scoring better than the average of aligned sites = 832 Number in coding regions = 580 Number in noncoding regions = 252 Number of orfs with sites within 600 bp upstream = 223 Fraction of orfs with sites within 600 bp upstream = 0.0358175 Motif number 6 AGTTTAACAGGTTGAATGCAATTTAAATATATTAAG 1 17 0 GTAAATTTAA 0.971268 -284 TTATATCTTTGTTATACAAAATTTAATTTATAATAT 3 114 1 GTAAATTTAA 0.971268 -187 TAAATATTTGGATATATCAAAATTAATTTTTATCCA 3 200 0 GTAAAATTAA 0.875281 -101 ATCAATACCAGAGGCTGTTAAGTTAACGACTTCACC 5 117 0 GGTAAGTTAA 0.72475 -184 TCTTAATAAAGATTAAATCAATTTATTATAAATAAC 6 26 0 GTAAATTTAT 0.826286 -111 TTCCACATTAGTTTATTTAAAGTTAATAAGATTGGG 7 125 0 GTTAAGTTAA 0.926609 -176 ATAATATCATAGTAATAATAATTTAACGAAATTCGT 7 239 1 ATTAATTTAA 0.572158 -62 TATAATTTACGGTATATTCAATTTAAATTAAAATAT 8 17 0 GTAAATTTAA 0.971268 -71 TGGTTTAACAGATAGAATTAAGTTAAGACCATTAAT 9 100 1 GTAAAGTTAA 0.965378 -201 GTGCTGTAAAGATTGAACGAATTTAATTTATAGAAT 10 246 1 GTAAATTTAA 0.971268 -55 * * * ******* Masking position 10 Map Score: 6.37061 Number of sites scoring better than the average of aligned sites = 127 Number in coding regions = 105 Number in noncoding regions = 22 Number of orfs with sites within 600 bp upstream = 22 Fraction of orfs with sites within 600 bp upstream = 0.00353357 Motif number 7 GACATCACCATTTATAAACAC 2 2 1 ACATCACCAT 0.933446 -67 AGTTGAGTAAAAAGCTCCATAATGTTCTAC 5 82 1 AAAGCTCCAT 0.931159 -219 AATTTATTATAAATAACCTTAGAGGTTTTA 6 13 0 AAATAACCTT 0.627594 -124 ATTTAATTATAAAAGTCCATAAATTACTTG 7 43 0 AAAAGTCCAT 0.755752 -258 TGCTATTGCGAAAGGACCATTTAGCAT 9 8 0 AAAGGACCAT 0.855 -293 GTCTTTCTCAATATCTCCATTCATAAAGAT 9 59 0 ATATCTCCAT 0.806713 -242 CACCTTAACTAAATCACCATTCTCAATTTT 10 59 0 AAATCACCAT 0.961192 -242 CCTCTCCTTGAAATCACCTTAACTAAATCA 10 73 0 AAATCACCTT 0.928533 -228 TGGCATAAATACAACTCCTTTTTTAATGTC 10 134 0 ACAACTCCTT 0.722057 -167 ********** Masking position 3 Map Score: 2.73502 Number of sites scoring better than the average of aligned sites = 355 Number in coding regions = 321 Number in noncoding regions = 34 Number of orfs with sites within 600 bp upstream = 36 Fraction of orfs with sites within 600 bp upstream = 0.0057822 Motif number 8 ATTCAGAAACTATTGTTATAACCGTTTCATAT 3 71 0 TATTGATAAC 0.965819 -230 ACCTCTTTAATCTTGTGATAATAAATTC 5 7 0 TCTTGATAAT 0.854358 -294 AATAAACAAATATTGGGATAAACAAGTAATTT 7 21 1 TATTGATAAA 0.966474 -280 TTATAGCGTATAATGTCATAAAACAATTAATA 7 92 1 TAATGATAAA 0.819638 -209 GTGGAAATAATATGGAAATAAAAGAAAATATC 7 155 1 TATGGATAAA 0.870724 -146 TAAAATCGCATATTGCTAAAACC 7 288 1 TATTGAAAAC 0.816659 -13 CAGATTCTTCACTTGAAATAAATATCATATCA 9 151 0 ACTTGATAAA 0.789403 -150 ATTTCCAAGGTCTTGCTATAACAGGCATTCCA 9 232 0 TCTTGATAAC 0.958859 -69 ATGAACCATTTATTGAAATAAATCCAGATGAT 10 15 1 TATTGATAAA 0.966474 -286 ***** ***** Masking position 8 Map Score: 3.59321 Number of sites scoring better than the average of aligned sites = 90 Number in coding regions = 74 Number in noncoding regions = 16 Number of orfs with sites within 600 bp upstream = 15 Fraction of orfs with sites within 600 bp upstream = 0.00240925 Motif number 9 AGTGTTAATAAATAAACTGCTAATATTATT 4 93 0 AATAAACTGC 0.962802 -57 TAAACTCCAAAATAAACTACTCCTCCAACA 5 190 0 AATAAACTAC 0.942258 -111 ATTACAGCTAAATAAACTCCAAAATAAACT 5 202 0 AATAAACTCC 0.93117 -99 ATTATTAATAAATAAACTCAGGGGATTTAA 5 281 1 AATAAACTCA 0.894552 -20 GGTTATTTATAATAAATTGATTTAATCTTT 6 25 1 AATAAATTGA 0.586441 -112 GGAAATGCAAAATAAACAAATATTGGGATA 7 11 1 AATAAACAAA 0.739888 -290 ATTAACTTTAAATAAACTAATGTGGAAATA 7 134 1 AATAAACTAA 0.910975 -167 ATTTCAAGTGAAGAATCTGCTATAAGAAGA 9 164 1 AAGAATCTGC 0.755724 -137 CTGCTATAAGAAGAATCTGCCCTGACTTAG 9 180 1 AAGAATCTGC 0.755724 -121 AGACCTTGGAAATAAACAAAGATTAAAAGA 9 251 1 AATAAACAAA 0.739888 -50 ********** Masking position 5 Map Score: 5.61493 Number of sites scoring better than the average of aligned sites = 215 Number in coding regions = 184 Number in noncoding regions = 31 Number of orfs with sites within 600 bp upstream = 28 Fraction of orfs with sites within 600 bp upstream = 0.00449727 Motif number 10 AAAAATATGTGGGGGTTTATAATGAATTAG 3 248 1 GGGGGTTTAT 0.942892 -53 CAAGATTAAAGAGGTTTTAAATAGATTTCC 5 24 1 GAGGTTTTAA 0.954439 -277 AATAAACTCAGGGGATTTAA 5 291 1 GGGGATTTAA 0.96084 -10 AATAACCTTAGAGGTTTTAAA 6 2 0 GAGGTTTTAA 0.954439 -135 TAATAAGATTGGGGTATTAATTGTTTTATG 7 108 0 GGGGTATTAA 0.970784 -193 TCGTAAAATAGGGGGATTAAAATCGCATAT 7 271 1 GGGGGATTAA 0.972877 -30 ********** Masking position 7 Map Score: 4.9374 Number of sites scoring better than the average of aligned sites = 53 Number in coding regions = 43 Number in noncoding regions = 10 Number of orfs with sites within 600 bp upstream = 10 Fraction of orfs with sites within 600 bp upstream = 0.00160617 Motif number 11 TTAAATTGCATTCAACCTGTTAAACTTTCCTTT 1 27 1 TTCAACTGAA 0.957062 -274 CGTTCCACCTTAAAAACTGATTCTT 1 286 0 TTCCACTTAA 0.931674 -15 ATATAAATTTTTCTATCTGTGAATACTGGATAT 7 182 0 TTCTACTGAA 0.974945 -119 CCTTGAGGAGTTCCAACTGCTATTGCGAAAGGA 9 22 0 TTCCACTGAT 0.956239 -279 CTTAACTTAATTCTATCTGTTAAACCAAACATT 9 94 0 TTCTACTGAA 0.975185 -207 AGACCATTAATTGCAGCTGAAAAGGATGATATG 9 125 1 TTGCACTGAA 0.953057 -176 ***** *** ** Masking position 8 Map Score: 0.51846 Number of sites scoring better than the average of aligned sites = 42 Number in coding regions = 38 Number in noncoding regions = 4 Number of orfs with sites within 600 bp upstream = 5 Fraction of orfs with sites within 600 bp upstream = 0.000803084 Motif number 12 ACTTTTTATTTTGCAAATATTAATTTATAT 1 186 1 TTGCAAATAT 0.965104 -115 TTTAAAAAAGTTGCAAACATTTGTAACTTT 3 170 0 TTGCAAACAT 0.880176 -131 TACTAAATATTTGGATATATCAAAATTAAT 3 209 0 TTGGATATAT 0.866841 -92 TTACTATTACTTGGAAATCTATTTAAAACC 5 36 0 TTGGAAATCT 0.90609 -265 CAACAATTAATTGTAAATATAGCATTACTT 5 165 0 TTGTAAATAT 0.874386 -136 AATTAAAATTTTGCAAATATTTAGCATAAA 6 68 1 TTGCAAATAT 0.965104 -69 TAGCAAGACCTTGGAAATAAACAAAGATTA 9 246 1 TTGGAAATAA 0.866841 -55 TAGGAAATATGATTCCTATT 10 291 0 TAGGAAATAT 0.866843 -10 ********** Masking position 5 Map Score: 5.80744 Number of sites scoring better than the average of aligned sites = 70 Number in coding regions = 61 Number in noncoding regions = 9 Number of orfs with sites within 600 bp upstream = 12 Fraction of orfs with sites within 600 bp upstream = 0.0019274 Motif number 13 CTACTCCGTTCATCATCCGCCATAAATATATTAAGT 1 113 0 CACTCGCATA 0.944382 -188 CTACTATATAAATCTTACGATATGAAACGGTTATAA 3 52 1 AACTAGAATA 0.9034 -249 TTCTTTAAAAAATCTTAAGGGATAAA 3 285 1 AACTAGGATA 0.976127 -16 CTCAACTAACAACCGTATCGAATTTACTATTACTTG 5 53 0 AACTACGATA 0.916201 -248 GTTAACTTAACAGCCTCTGGTATTGATAACGAAAAT 5 126 1 CACTCGGATA 0.979589 -175 TTACATCGATAACCCTCAGACATAAAATTACAGCTA 5 222 0 AACTCGAATA 0.910169 -79 ATTAATAAATAAACTCAGGGGATTTAA 5 284 1 AACCAGGATA 0.895035 -17 ACAGGCATTCCAGCGTCAGGCATCCAAACTCTATCT 9 208 0 CACTCGGATA 0.979589 -93 CGTTGAGGCAAATCCTAACGTATTAACCAATACTGC 10 172 1 AACTACGATA 0.916201 -129 TTACAGCACACACCTTAAGCTCTGGAATTTTACACA 10 219 0 CACTAGCCTA 0.765724 -82 ** * ** ** ** * Masking position 13 Map Score: 4.62627 Number of sites scoring better than the average of aligned sites = 42 Number in coding regions = 37 Number in noncoding regions = 5 Number of orfs with sites within 600 bp upstream = 9 Fraction of orfs with sites within 600 bp upstream = 0.00144555 Motif number 14 ********** No masking Map Score: -6.40666e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 15 ********** No masking Map Score: -6.40666e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0