AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00970_mjan_reg_300.orf -o00970_mjan_300.ace -a/home/amcguire/genomes/ORF_mjan.txt -z/home/amcguire/genomes/mjan.fna -g0.31 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.31 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: MJ0627 30 M. jannaschii predicted coding region MJ0627 MJ1553 21 transcriptional regulatory protein, arsR family MJ1001 36 ribosomal protein S6 modification protein 2 (rimK) Input sequences: #1 MJ0237 300 arginyl-tRNA synthetase (argS) #2 MJ0389 90 tyrosyl-tRNA synthetase (trS) #3 MJ0487 282 phenylalanyl-tRNA synthetase, subunit alpha (pheS) #4 MJ0539 267 tRNA synthetase, putative #5 MJ0541 89 conserved hypothetical protein #6 MJ0542 127 phosphoenolpyruvate synthase #7 MJ0543 132 ubiquinol-cytochrome C reductase complex, subunitVI requiring protein #8 MJ0544 103 dolichyl-phosphate mannose synthase #9 MJ0547 165 cell division inhibitor minD #10 MJ0548 111 conserved hypothetical protein #11 MJ0564 300 alanyl-tRNA synthetase (alaS) #12 MJ0623 300 conserved hypothetical protein #13 MJ0625 49 M. jannaschii predicted coding region MJ0625 #14 MJ0626 92 conserved hypothetical protein #15 MJ0633 137 leucyl-tRNA synthetase (leuS) #16 MJ0948 25 M. jannaschii predicted coding region MJ0948 #17 MJ0949 43 conserved hypothetical protein #18 MJ0950 184 conserved hypothetical protein #19 MJ0951 244 conserved hypothetical protein #20 MJ0952 180 conserved hypothetical protein #21 MJ1000 202 histidyl-tRNA synthetase (hisS) #22 MJ1002 87 conserved hypothetical protein #23 MJ1003 101 3-isopropylmalate dehydratase (leuC) #24 MJ1004 90 conserved hypothetical protein #25 MJ1007 101 valyl-tRNA synthetase (valS) #26 MJ1077 89 seryl-tRNA synthetase (serS) #27 MJ1078 273 M. jannaschii predicted coding region MJ1078 #28 MJ1079 177 conserved hypothetical protein #29 MJ1080 130 M. jannaschii predicted coding region MJ1080 #30 MJ1108 300 phenylalanyl-tRNA synthetase, subunit beta (pheT) #31 MJ1197 85 threonyl-tRNA synthetase (thrS) #32 MJ1238 90 prolyl-tRNA synthetase (proS) #33 MJ1260 300 SSU ribosomal protein S6E #34 MJ1261 205 translation initiation factor aIF-2, subunit gamma (aif2G) #35 MJ1262 163 conserved hypothetical protein #36 MJ1263 130 methionyl-tRNA synthetase (metS) #37 MJ1377 184 glutamyl-tRNA synthetase (gltX) #38 MJ1415 66 tryptophanyl-tRNA synthetase (trpS) #39 MJ1545 77 conserved hypothetical protein #40 MJ1548 53 conserved hypothetical protein #41 MJ1550 243 M. jannaschii predicted coding region MJ1550 #42 MJ1552 103 conserved hypothetical protein #43 MJ1554 82 conserved hypothetical protein #44 MJ1555 150 aspartyl-tRNA synthetase (aspS) Motif number 1 GGGTTTTTAAATAAATTTAATTACATACCT 1 97 0 ATAAATTTAA 0.730495 -204 TTACTATGGAAAATATAAAAACCCAATGGG 1 124 0 AAATATAAAA 0.823937 -177 ATTTAAATTAATAAATTAAAAAGAAGGTAT 1 228 1 ATAAATTAAA 0.795528 -73 AATTTTTAAATTAAATAAAAAATGAGAGAG 1 273 1 TTAAATAAAA 0.832093 -28 TTACCATAGCTTATATAATAAAGTTTTGCA 2 44 1 TTATATAATA 0.607218 -47 TTTTAGTAGTTAATATTTAAT 3 2 0 TAATATTTAA 0.503637 -281 GTTTTTATAGTTATATAATAAACTTATAGA 4 71 0 TTATATAATA 0.607218 -197 AATAATTTGTTAAAATATTAACTACCAAAA 4 157 0 TAAAATATTA 0.500257 -111 CTATATTATTTAAAATATAAAAATCAAAAA 4 210 0 TAAAATATAA 0.589126 -58 GGAATTGTTAAAATATATAATGATAAAATA 5 44 0 AAATATATAA 0.77143 -46 AAATGTTATAAAAAATTAAAAAAAGTTTCA 6 14 0 AAAAATTAAA 0.871332 -114 TGATAATATTATAAATAAAATAGTAGAGTT 6 55 0 ATAAATAAAA 0.81441 -73 TTATTTTAAAATAAATTTAAATATTTGAAT 6 84 0 ATAAATTTAA 0.730495 -44 AAATTTATTTTAAAATAAAAGCTATATATA 6 96 1 TAAAATAAAA 0.89706 -32 ATTTTTAACTTAATATTTAAAGCTTACTGT 7 18 0 TAATATTTAA 0.503637 -115 ATATTAAGTTAAAAATATTAGCATCACAAT 7 32 1 AAAAATATTA 0.733474 -101 TCAATTCCCAATATATAAAATTTATTGTGA 7 55 0 ATATATAAAA 0.728905 -78 CTTATTACCATAAAATTTTAAAATTTTGTT 8 46 1 TAAAATTTTA 0.469049 -58 AAGCGTGTCCTAATATTAAACCGAAGAGTA 9 89 1 TAATATTAAA 0.825083 -77 ACCGAAGAGTATATATTTAACTTAACTATA 9 108 1 ATATATTTAA 0.626892 -58 ATTTAATAACTAATATATAAGATTAACGAT 10 49 1 TAATATATAA 0.543652 -63 AAATTAATATTTAAATATAACTTATAAAAT 11 164 1 TTAAATATAA 0.504107 -137 ATATAACTTATAAAATTATAGCTACTTACC 11 178 1 TAAAATTATA 0.792383 -123 TGGTTCATAAATAAATTTTATTAATTTGTG 11 220 0 ATAAATTTTA 0.576105 -81 ACCACAAACTATATATAAAAAGTCCTATTA 12 21 1 ATATATAAAA 0.728905 -280 CACCAATTAATAATATAATAGGACTTTTTA 12 36 0 TAATATAATA 0.731393 -265 AATTTAAAATTAATATTAAAAAACACGTTT 17 14 1 TAATATTAAA 0.825083 -30 AAATGTAAAATTAAAATTTTTATCC 19 6 1 TAAAATTAAA 0.883191 -239 TGTTTATGTCTAAAATAAAAATAGTGGGCC 19 110 1 TAAAATAAAA 0.89706 -135 TAGCATCAATAAAAATTTAACTCATCATAT 19 216 1 AAAAATTTAA 0.826851 -29 AGTAAGAGATATATATTTTAATGCCTTAAT 20 52 0 ATATATTTTA 0.456601 -129 CAATAACTGTAAATATATAAATACTTATAT 21 103 1 AAATATATAA 0.77143 -100 ACCAAAACGGATATATTAAAAGGAGCTTTC 22 28 0 ATATATTAAA 0.704486 -60 CTTTTTTGCAAAAAATATAACCAAAC 23 7 0 AAAAATATAA 0.84534 -95 ATATTTATGATAAAATAATATTATACTTGC 24 58 0 TAAAATAATA 0.814704 -33 ACTATTTTTATTAAATTAAAAACTCTTCAA 25 61 1 TTAAATTAAA 0.810594 -41 GGGACAGATTTTAAATAAAAGAACAATAGT 27 23 1 TTAAATAAAA 0.832093 -251 TACTACTGCAAAAAATAATAAAAAATGTTT 27 136 0 AAAAATAATA 0.793628 -138 TATATTAAAAATATATTAAAAATGCATCTT 27 244 0 ATATATTAAA 0.704486 -30 AATATATTTTTAATATATTATCTTTCA 27 257 1 TAATATATTA 0.447505 -17 TTAAGTTTTTTAAAATTAAAAATGAATGTA 28 144 0 TAAAATTAAA 0.883191 -34 AAAACATATCAAAAATTTAATTGGGTATTG 29 24 0 AAAAATTTAA 0.826851 -107 GTTTAATATTTAAAATTTAATTAAGGTCTT 29 68 0 TAAAATTTAA 0.544638 -63 AATTATAACTATAAATTATAACTATTCAAG 29 97 0 ATAAATTATA 0.662036 -34 TTCTAAATTATTAAATTATAACTATAAATT 29 110 0 TTAAATTATA 0.682869 -21 CCCTTAGAAATTAAATTTAAAACCTCTAAA 30 13 1 TTAAATTTAA 0.474699 -288 AACAAAGCAAAAATATTTAATATATCTTTT 31 35 1 AAATATTTAA 0.747361 -51 TATCTTTATCTAAAATTTAA 31 76 1 TAAAATTTAA 0.544638 -10 AACTGTCATTTTAAATAAAAATTAATATTT 32 40 1 TTAAATAAAA 0.832093 -51 TAGCAAATTAATAAATATTAATTTTTATTT 32 52 0 ATAAATATTA 0.610029 -39 TAATTTGCTATAAAATAAAAGGTGATATC 32 72 1 TAAAATAAAA 0.89706 -19 GCTATTGTGATAATATAATA 33 1 0 TAATATAATA 0.731393 -300 AAAAATTATTTAAAATATTATGTCTCAATA 33 48 1 TAAAATATTA 0.500257 -253 AACAAATAACAAAAATAAAAATAGGAGGGA 33 276 1 AAAAATAAAA 0.88423 -25 CACAGATAAATAAAATAAAAATAAAATTAG 34 25 0 TAAAATAAAA 0.89706 -181 CTTTATAAGCTAAAATTATAAAAATGTGAA 34 115 1 TAAAATTATA 0.792383 -91 ATTAAGGAATAAATATAAAAGCCCGTAGGG 34 177 1 AAATATAAAA 0.823937 -29 ATAAATATTGTAAAATATTATTGTGGTGGA 37 16 0 TAAAATATTA 0.500257 -169 AATAATAGTTAAATATATAAATATTGTAAA 37 32 0 AAATATATAA 0.77143 -153 AATACATAATAAATATATTACAACTGATGT 38 20 1 AAATATATTA 0.629189 -47 ATCAAAAACTTTATATAATA 39 68 1 TTATATAATA 0.607218 -10 TATTTATGGATAAAATTAAAAAGGAAGTGC 41 19 1 TAAAATTAAA 0.883191 -225 TAGTTTTGTCATATATTATAAACCCTATTA 41 169 0 ATATATTATA 0.545508 -75 AAAATAATTAAAAAATTAAAT 44 2 0 AAAAATTAAA 0.871332 -149 TAAAATTGTCAAAAATAAAAAATAATTAAA 44 20 0 AAAAATAAAA 0.88423 -131 TTTTAACCTATAAAATTAAATATATAGATA 44 45 1 TAAAATTAAA 0.883191 -106 ********** Masking position 5 Map Score: 61.0627 Number of sites scoring better than the average of aligned sites = 2831 Number in coding regions = 1832 Number in noncoding regions = 999 Number of orfs with sites within 600 bp upstream = 595 Fraction of orfs with sites within 600 bp upstream = 0.095567 Motif number 2 TACTTTATTATTTTGGTGATACT 2 3 0 TTTTGTGATA 0.927327 -88 AACAAAAATGTTGTGGTGATATATC 2 76 1 TTGTGTGATA 0.735883 -15 TAAAATAAATTTTTATTAATTGAGATTATTA 3 27 1 TTTTATAATT 0.73214 -256 AATATCAAAGTTTTACAAATAGAAAAAGAAG 3 120 1 TTTTAAAATA 0.755747 -163 CATATTCTTATTTTAAAAATTTTCGTCCTTC 3 147 0 TTTTAAAATT 0.580707 -136 TGTTATCTATTTTTGATGATTGA 4 3 0 TTTTGTGATT 0.850796 -265 CTATAAAAACTTTTGATGATTGACTATAATT 4 91 1 TTTTGTGATT 0.850796 -177 TCTTCACTATTTTTGGTGATACA 5 77 1 TTTTGTGATA 0.927327 -13 GGCTGTTTCGTTTTATAGATAAAGAGAAGGA 7 97 0 TTTTAAGATA 0.741026 -36 TTTTAAAATTTTATGGTAATAAGAAAAAGTA 8 38 0 TTATGTAATA 0.366405 -66 AATTTTAAAATTTTGTTAAAAATTTACTAGC 8 59 1 TTTTGTAAAA 0.819945 -45 GATGTAATGTTTTTGAAGATAAGCGTGTCCT 9 69 1 TTTTGAGATA 0.865982 -97 CATAAATAAATTTTATTAATTTGTGAGATAC 11 214 0 TTTTATAATT 0.73214 -87 TATATATCTTTTTTGGTGATATT 13 37 1 TTTTGTGATA 0.927327 -13 TAATGTAATGTTTTGTAAAAACTAAGTATTG 15 97 1 TTTTGAAAAA 0.732358 -41 TAATGCATCGTTTTGATGAAACTTTC 18 6 0 TTTTGTGAAA 0.833129 -179 ACGTTTTGTTTTTTGTAAATAAATAGCAAAG 21 174 0 TTTTGAAATA 0.87498 -29 CTAATAACTTTTTTGCAAAAAATATAACCAA 23 13 0 TTTTGAAAAA 0.732358 -89 CTTTGGGATGTTTTGTAAATAAAGTATTTAG 23 73 1 TTTTGAAATA 0.87498 -29 CCTCAACTATTTTTATTAAATTAAAAACTCT 25 56 1 TTTTATAAAT 0.507332 -46 TTTATTGTGTTTTTAGAAATACAGTTTAAT 26 10 0 TTTTAAAATA 0.755747 -80 CTCTTATTGTTTTTATTGAATTGATAATTAG 26 53 0 TTTTATGAAT 0.497276 -37 CTAAATCAATTTTTGATAATATGTATAAAAT 27 78 0 TTTTGTAATA 0.932288 -196 TTAGTGTTAATTTTAAAAAAACAAACATTTT 27 114 1 TTTTAAAAAA 0.525015 -160 TGGAAAATCTTTTTAAAAATACCAACATTGA 27 202 1 TTTTAAAATA 0.755747 -72 GGATTTTCAATTTTGTTAATTGATTTATTGA 30 102 0 TTTTGTAATT 0.860652 -199 TATAAACATTTTGTGATAATAAAGCTTTATT 30 214 1 TTGTGTAATA 0.751111 -87 TAATAATTAGTTGTAATAATAGGATAATTGA 30 248 0 TTGTATAATA 0.571893 -53 TTCAATGCTATTGTGATAATATAATA 33 6 0 TTGTGTAATA 0.751111 -295 TTAAGGGCATTTTTATAAATATCTTTATTTC 33 196 0 TTTTAAAATA 0.755747 -105 AACTTTTAAGTTTTGATAAAACAGATTTTTT 33 225 0 TTTTGTAAAA 0.819945 -76 TTTTAATAATATGAGTATCAA 35 1 1 TTTTATAATA 0.842709 -163 AAGTTTTTGATTTTGTTGAAATGCATTATGT 39 48 0 TTTTGTGAAA 0.833129 -30 TTAACTGTATTTTTGTTGATTTCTGCAATAA 41 120 1 TTTTGTGATT 0.850796 -124 TCCTTCCTATTTTTATTAAATGGTAGGTAGA 41 215 0 TTTTATAAAT 0.507332 -29 CTTAAAAAGTTTTTAGTGATTTGGGAAACAC 44 121 1 TTTTATGATT 0.71632 -30 ***** ***** Masking position 4 Map Score: 38.3553 Number of sites scoring better than the average of aligned sites = 733 Number in coding regions = 530 Number in noncoding regions = 203 Number of orfs with sites within 600 bp upstream = 197 Fraction of orfs with sites within 600 bp upstream = 0.0316415 Motif number 3 TAAACTTTTCTATCATTTATTTAAATTAATAAATT 1 210 1 TTTATTTAAA 0.917835 -91 ACTGCTAAATTTTATTCTTTTTATAGTATTATTTT 3 242 0 TTTTTTTATA 0.69117 -41 TTTGTCTAAAACTAAGTTATTTATATCATTTTGGT 4 129 1 ATTATTTATA 0.906778 -139 AAATTTGGATTTTTTGATTTTTATATTTTAAATAA 4 200 1 TTTTTTTATA 0.69117 -68 TATTTTATTGTCTATATTATTTAAAATATAAAAAT 4 216 0 TTTATTTAAA 0.917697 -52 ATGAAACTTTTTTTAATTTTTTATAACATTTTCAC 6 13 1 TTTTTTTATA 0.690364 -115 TAATAACTCTACTATTTTATTTATAATATTATCAT 6 51 1 ATTATTTATA 0.906779 -77 TAATATTATCATTCAAATATTTAAATTTATTTTAA 6 74 1 ATTATTTAAA 0.947601 -54 AAAATCTTTATATTACCTATTTACAACACTAAAGT 9 138 0 TTTATTTACA 0.77059 -28 ATATATCGTTATTTACCTATTTATATACTAAGAGA 18 60 0 ATTATTTATA 0.906779 -125 TAAAACAGTAATTCCTATATTTAAACTAACAAATG 19 77 1 ATTATTTAAA 0.947605 -168 AGATATAAGTATTTATATATTTACAGTTATTGATG 21 100 0 ATTATTTACA 0.844672 -103 GTTATACCGAATTGAATTATGTAAAGTTGTAGTGG 22 56 1 ATTATGTAAA 0.581126 -32 TTATCACCTAAATACTTTATTTACAAAACATCCCA 23 76 0 ATTATTTACA 0.844672 -26 TGTATTAGAGAGTTATTTATTTAAACCTCAACTAT 25 31 1 ATTATTTAAA 0.947605 -71 AGAAACTATTGTTCTTTTATTTAAAATCTGTCCCT 27 22 0 GTTATTTAAA 0.657276 -252 TAAAATTAACACTAATTTATCTAAATCAATTTTTG 27 94 0 ATTATCTAAA 0.830076 -180 TTCACTCTGTTTTAAGTTTTTTAAAATTAAAAATG 28 150 0 TTTTTTTAAA 0.805305 -28 TAACTATTCAAGTTTAATATTTAAAATTTAATTAA 29 74 0 ATTATTTAAA 0.947605 -57 TTTAGGAATTATTTATTTATTTAGAGGTTTTAAAT 30 27 0 ATTATTTAGA 0.669813 -274 ATTCCTAAATACTCTCATTTCTAAATTCCAAACTT 30 53 1 ATTTTCTAAA 0.645336 -248 TTAAAATGACAGTTGGTTATTTAAAGTTTTTCATG 32 19 0 ATTATTTAAA 0.947605 -72 ATTTGTTTGGTTTCTAATTTTTAAATTAACTTTTA 33 248 0 TTTTTTTAAA 0.80624 -53 AGAAATCACCACTACAATATTTAAACACAGATAAA 34 45 0 ATTATTTAAA 0.947601 -161 CTTATGGTATTTTCACATTTTTATAATTTTAGCTT 34 121 0 TTTTTTTATA 0.691167 -85 ACAATAATATTTTACAATATTTATATATTTAACTA 37 22 1 TTTATTTATA 0.854536 -163 ATATATTACAACTGATGTATTTAAATCTTTATATC 38 32 1 ATTATTTAAA 0.947605 -35 AAGCTAATTCATTTATATATCTAAAAAAGATACTA 43 35 0 ATTATCTAAA 0.830077 -48 TATATAAATGAATTAGCTTTTTAAATATTCTTAGG 43 51 1 ATTTTTTAAA 0.870744 -32 TTTCCTAAGCTTTTGTGTATCTATATATTTAATTT 44 57 0 TTTATCTATA 0.618743 -94 * * ******** Masking position 8 Map Score: 31.571 Number of sites scoring better than the average of aligned sites = 515 Number in coding regions = 340 Number in noncoding regions = 175 Number of orfs with sites within 600 bp upstream = 175 Fraction of orfs with sites within 600 bp upstream = 0.0281079 Motif number 4 GGTTTTTAAATAAATTTAATTACATACCTAAA 1 94 0 TAATTAATTA 0.694188 -207 TAAATGATAGAAAAGTTTATATATGAAGATGA 1 197 0 AAATTTATAT 0.774089 -104 TTGTTCATGCAAAACTTTATTATATAAGCTAT 2 49 0 AAATTTATTA 0.915272 -42 CTACTAAAATAAATTTTTATTAATTGAGATTA 3 23 1 AAATTTATTA 0.915177 -260 TTGAGATTATTAAAGTTCATTATTGGATATAT 3 46 1 TAATTCATTA 0.724483 -237 ACAGAACTGCTAAATTTTATTCTTTTTATAGT 3 250 0 TAATTTATTC 0.612135 -33 ATTTCCCTCAAAATTTTTGTTTCTTCTATTTT 4 245 0 AAATTTGTTT 0.814933 -23 CTTTAACTTTTAAGTTTTGTTTTTATGACTAT 5 15 1 TAATTTGTTT 0.793355 -75 AAAATTAAAAAAAGTTTCATAA 6 1 0 AAATTCATAA 0.513723 -127 AGCATCACAATAAATTTTATATATTGGGAATT 7 51 1 TAATTTATAT 0.749093 -82 ATAAAATTTTAAAATTTTGTTAAAAATTTACT 8 55 1 AAATTTGTTA 0.829427 -49 TCTAAAATCTTTATATTACCTATTTA 9 150 0 AAATTTATAT 0.774089 -16 TATTAAATAGTAATATTTGTTAGTTTGAAAAT 10 25 0 TAATTTGTTA 0.808657 -87 AAGAAGACAAAAATGTTTGTATATGAATTTGC 11 124 0 AAATTTGTAT 0.606674 -177 ATTTAAATATTAATTTTCATAAGAAAGAAGAC 11 148 0 TAATTCATAA 0.479296 -153 GGTTCATAAATAAATTTTATTAATTTGTGAGA 11 217 0 TAATTTATTA 0.903956 -84 AAAAGATATATAATGTTTGTTTAAAATCTGTT 13 17 0 TAATTTGTTT 0.793233 -33 GCTAAACCTAAAAGATTTTTTATTATGTAATG 14 26 1 AAATTTTTTA 0.298166 -67 ATTGGTTAATTTTCATTAGTATTAG 16 7 1 TAATTCATTA 0.724402 -19 ACGTGTTTTTTAATATTAATTTTAAATTTTC 17 10 0 TAATTAATTT 0.672507 -34 TTCAAAGCATTAAGATTTATAAGCAACTATAT 18 91 0 TAATTTATAA 0.767158 -94 TGAAATCCTATAATTTTCATTTAATAGAAAGC 18 125 1 TAATTCATTT 0.704292 -60 AAAAGGATAAAAATTTTAATTTTACATTT 19 8 0 AAATTAATTT 0.702367 -237 TTTTAGACATAAACATTTGTTAGTTTAAATAT 19 93 0 AAATTTGTTA 0.829268 -152 ATGATGAGTTAAATTTTTATTGATGCTAAAGG 19 212 0 AAATTTATTG 0.496028 -33 ATGCTTACAATAAGTTTTATTAAGGCATTAAA 20 34 1 TAATTTATTA 0.903959 -147 ATATGCAATAAAACATTTATTCCTGCGAAAGT 20 87 0 AAATTTATTC 0.644295 -94 CACAAAACCGAAAGGTTTATATAGAATTTCAT 21 54 0 AAATTTATAT 0.774089 -149 GCTATCTTATAAATCTTTGTTTCATCAGCATA 21 143 0 AAATTTGTTT 0.815006 -60 ACATATTATCAAAAATTGATTTAGATAAATTA 27 85 1 AAATTGATTT 0.385381 -189 AAATAATAAAAAATGTTTGTTTTTTTAAAATT 27 122 0 AAATTTGTTT 0.814918 -152 TCACTAACTTTAAACTTTATTATTACATTCAT 28 121 1 TAATTTATTA 0.903959 -57 TTTAATATTTAAAATTTAATTAAGGTCTTATC 29 65 0 AAATTAATTA 0.722629 -66 TTAGAGGTTTTAAATTTAATTTCTAAGGGTT 30 10 0 TAATTAATTT 0.672875 -291 AGTCTGTAGATAATTTTAATTATAGTTTGTTT 30 178 0 TAATTAATTA 0.69411 -123 TATTATCACAAAATGTTTATATACGAGTCTGT 30 203 0 AAATTTATAT 0.774089 -98 TTGACTTAATAAAGCTTTATTATCACAAAATG 30 220 0 AAATTTATTA 0.915273 -81 AAATAAAAATTAATATTTATTAATTTGCTATA 32 52 1 TAATTTATTA 0.903525 -39 ATCAAAACTTAAAAGTTAATTTAAAAATTAGA 33 239 1 AAATTAATTT 0.702448 -62 ATTTATTCCTTAATTTTTATTAACTTTGAAAA 34 159 0 TAATTTATTA 0.903855 -47 AAAAAGGTATTAAAGTTTATTAAGGAAATTTG 36 20 1 TAATTTATTA 0.903955 -111 TGATGTATTTAAATCTTTATATCAAAATGAAG 38 44 1 AAATTTATAT 0.774089 -23 AACAAAATCAAAAACTTTATATAATA 39 62 1 AAATTTATAT 0.774089 -16 *** ******* Masking position 6 Map Score: 36.9553 Number of sites scoring better than the average of aligned sites = 647 Number in coding regions = 401 Number in noncoding regions = 246 Number of orfs with sites within 600 bp upstream = 244 Fraction of orfs with sites within 600 bp upstream = 0.0391905 Motif number 5 AATTAAAAAGAAGGTATTTAAAGAAAATCCCC 1 241 1 AAGGTTTAAA 0.982523 -60 AATGTTTTAAGAGGTCTTGAAAGATACTAAAA 11 255 1 GAGGTTTAAA 0.921407 -46 TGAAACCATTAAGGTTTTAAAATACTCAAAAC 14 56 1 AAGGTTTAAA 0.982523 -37 GTATATTAATAAGGCGTTTAAAACTCCATTTA 15 51 0 AAGGCTTAAA 0.972383 -87 AAGTTTTATTAAGGCATTAAAATATATATCTC 20 45 1 AAGGCTTAAA 0.972383 -136 ATCCCAAAGAAAGGTGTTCAAATTTTCTATCA 23 50 0 AAGGTTTAAA 0.982523 -52 TGGAATAGGTATTAAAATTCCTAAAGA 24 6 1 TAGGTTTAAA 0.887769 -85 ACTCTGTTTTAAGTTTTTTAAAATTAAAAATG 28 150 0 AAGTTTTAAA 0.815821 -28 TCTTTCAAAAAAGGTATTAAAGTTTATTAAGG 36 13 1 AAGGTTTAAG 0.913694 -118 CTTCTTATAGAAGGCATTCAAATTTCCTTAAT 36 38 0 AAGGCTTAAA 0.972383 -93 ATAATCAGTTAAGGTTTTTAAAGTTAATGGTA 37 147 1 AAGGTTTAAA 0.982523 -38 ***** ** *** Masking position 10 Map Score: 14.6967 Number of sites scoring better than the average of aligned sites = 108 Number in coding regions = 80 Number in noncoding regions = 28 Number of orfs with sites within 600 bp upstream = 37 Fraction of orfs with sites within 600 bp upstream = 0.00594282 Motif number 6 TAATATCATCTTCATATATAAACTTTTCTATCATTTATT 1 192 1 TTTATATTTT 0.411732 -109 TTTAAAAATTTTCGTCCTTCTTTTTCTATTTGTAAAACT 3 128 0 TTTTTTTTTT 0.85365 -155 ATTCATCAGTTTCGTCCATATTCTTATTTTAAAAATTTT 3 155 0 TTTATTTTTT 0.939975 -128 TTTATTCTTTTTATAGTATTATTTTCTTTAATAAATAGA 3 228 0 TTAATTTTTT 0.759645 -55 CCATACAGAACTGCTAAATTTTATTCTTTTTATAGTATT 3 247 0 CTTATTTTTT 0.500779 -36 TTATATCATTTTGGTAGTTAATATTTTAACAAATTATTA 4 149 1 TTTTTTTTTA 0.432717 -119 AAATTTGGATTTTTTGATTTTTATATTTTAAATAATATA 4 200 1 TTTTTTTATT 0.414162 -68 AAATTTTTGTTTCTTCTATTTTATTGTCTATATTATTTA 4 228 0 TTTATTTTTT 0.939975 -40 TTTATGACTATTTTATCATTATATATTTTAACAATTCCA 5 36 1 TTAATTTATT 0.276964 -54 ACTCTACTATTTTATTTATAATATTATCATTCAAATATT 6 56 1 TTTATTTTTA 0.671911 -72 AACTTAATATTTAAAGCTTACTGTTATTTTG 7 3 0 TTATTTTTTT 0.5407 -130 AATTCCTATTTTTCTACTTTTTCTTATTACCATAAAATT 8 24 1 TTTTTTTTTA 0.432727 -80 CCTTATTCAATTAATTAATGATGTAATGTTTTTGAAGAT 9 50 1 TTTATTTATT 0.65493 -116 TATATATTAGTTATTAAATAGTAATATTTGTTAGTTTGA 10 29 0 TTTATTATTT 0.55241 -83 AAAGAAATAATTCCTAAATGCTCTTATTTTCAAATTCTA 11 14 1 TTTATTTTTT 0.939975 -287 TGTTGTTTGGTTTATGGATTGTCTTGTTGGATAAGTTTA 11 51 0 TTTATTTTTG 0.763048 -250 TTTTTATCCTTTTTTATCTTATTTTTTGTACTCAGAATG 19 27 1 TTTCTTTTTT 0.576778 -218 AATATTATACTTGCTTAATGTTTTTATTTCTATCTCTTT 24 33 0 TTTATTTTTT 0.939975 -58 TAATTAGGTATTTATGTTTTTTATTGTGTTTTTAGAAAT 26 21 0 TTTTTTTTTT 0.85365 -69 AAATAAATAATTCCTAAATACTCTCATTTCTAAATTCCA 30 44 1 TTTATTTCTT 0.52681 -257 TGTTAATTGATTTATTGATTGTCTTGTTGTATAAGTTTG 30 81 0 TTTATTTTTG 0.763048 -220 TAATTATAGTTTGTTTAATAATATTCTATCGTTATTCTA 30 155 0 TTTATTTTTT 0.939975 -146 GCAAAAATATTTAATATATCTTTTTCTTTTATAATTATC 31 41 1 TTTATTTTTT 0.939975 -45 TTATAGCAAATTAATAAATATTAATTTTTATTTAAAATG 32 46 0 TTTATTATTT 0.55241 -45 TAAGGGCATTTTTATAAATATCTTTATTTCACCCTATGC 33 187 0 TTTATCTTTT 0.509165 -114 TAGCTCCTAATTTTATTTTTATTTTATTTATCTGTGTTT 34 19 1 TTATTTTTTT 0.5407 -187 TATATAAATATTGTAAAATATTATTGTGGTGGATATTG 37 10 0 TTAATTTTTG 0.393913 -175 CCCTTATTTCATGTTCTTTTATGAAGTAATAT 40 32 0 TTTATTTTTT 0.939975 -22 GTATTGGATTTTATTATTTGGTATTATCTATTTGATGGA 41 81 1 TTTTTTTTTT 0.85365 -163 ATGAATTAGCTTTTTAAATATTCTTAGGTGATATA 43 58 1 TTTATTTTGT 0.500779 -25 ATTTAATTTTTTAATTATTTTTTATTTTTGACAAT 44 7 1 TTTATTTTTT 0.939975 -144 ** * ** * ** * * Masking position 9 Map Score: 26.9079 Number of sites scoring better than the average of aligned sites = 526 Number in coding regions = 364 Number in noncoding regions = 162 Number of orfs with sites within 600 bp upstream = 131 Fraction of orfs with sites within 600 bp upstream = 0.0210408 Motif number 7 ATTTATTTAAAAACCCATTGGGTTTTTATATTTTCC 1 111 1 AAACTTGTTT 0.875209 -190 TTATTTAATTTAAAAATTGGGGATTTTCTTTAAATA 1 255 0 TAAATGGTTT 0.874218 -46 TATGTAACCTAAAGAAATTTGGATTTTTTGATTTTT 4 186 1 AAAATTGTTT 0.937822 -82 TGTATCACCAAAAATAGTGAAGATTTGGAATTGTTA 5 64 0 AAAATGGTTT 0.9144 -26 TATTATAAATAAAATAGTAGAGTTATTACAAGTGAA 6 43 0 AAAATAGTAT 0.438669 -85 ATTTGCCTATAATCTATTGTAGGTTTGGAATTTCTG 11 94 0 AATATGGTTT 0.536619 -207 CCATCACCTTTAATGATTGCAGTTTTTAGTATCTTT 11 274 0 TAAATGGTTT 0.87422 -27 TACATAATAAAAAATCTTTTAGGTTTAGCCTTAAAA 14 19 0 AAACTTGTTT 0.898282 -74 TTATGTAATGAAACCATTAAGGTTTTAAAATACTCA 14 48 1 AAAATAGTTT 0.497551 -45 AGGGTTAAATTAATAAATGGAGTTTTAAACGCCTTA 15 38 1 TAAATGGTTT 0.87422 -100 TTACATTATTAAAATAATTAAGGTATATTAATAAGG 15 69 0 AAAATTGTAT 0.771616 -69 TAGTTGCTTATAAATCTTAATGCTTTGAATATGAAA 18 94 1 TAACTAGTTT 0.570423 -91 AATTTATATCTAAAAAGTTTCGCTTTCTATTAAATG 18 142 0 TAAATTGTTT 0.907818 -43 AAATTCTATATAAACCTTTCGGTTTTGTGTAAAGTT 21 57 1 TAACTTGTTT 0.851453 -146 CCTTAAATACGTTTTGTTTTTTGTAAATAA 21 183 0 AAACTTGTTT 0.897945 -20 TAATTTAATAAAAATAGTTGAGGTTTAAATAAATAA 25 43 0 AAAATTGTTT 0.938024 -59 TTTTAATTCTAAATCAATGTTGGTATTTTTAAAAAG 27 210 0 AAAATGGTAT 0.704099 -64 AAAGATATATTAAATATTTTTGCTTTGTTTAATCAA 31 28 0 TAAATTGTTT 0.907813 -58 ATAATATTTTAAATAATTTTTGGTTTTAAACTTTCA 33 33 0 AAAATTGTTT 0.937673 -268 TTAACTTTGAAAAACACTTATGGTATTTTCACATTT 34 136 0 AAAATTGTAT 0.771139 -70 GCGAGTAATGAAATCCTTTAGGATTTCATCTGATGG 35 92 1 AAACTTGTTT 0.875209 -72 CTTTTCCTAATAATCAGTTAAGGTTTTTAAAGTTAA 37 138 1 TAAATTGTTT 0.907808 -47 AGATAAGGGATATTTAGTTTAGTTTTGTCATATATT 41 182 0 TATATTGTTT 0.516331 -62 *** * ** * *** Masking position 8 Map Score: 27.4301 Number of sites scoring better than the average of aligned sites = 224 Number in coding regions = 173 Number in noncoding regions = 51 Number of orfs with sites within 600 bp upstream = 59 Fraction of orfs with sites within 600 bp upstream = 0.00947639 Motif number 8 ATCATTTATTTAAATTAATAAATTAAAAAGA 1 221 1 TAATTAATAA 0.793846 -80 AATAATAAAGTAAATTTATAAATTACCATAG 2 22 1 TAATTTATAA 0.832657 -69 TTTAATAATCTCAATTAATAAAAATTTATTT 3 29 0 TAATTAATAA 0.793846 -254 TAGTATTATTTTCTTTAATAAATAGATAACT 3 223 0 TCTTTAATAA 0.711389 -60 TGGATGCTAGTAAATTTTTAACAAAATTTTA 8 64 0 TAATTTTTAA 0.729783 -40 TAAGTAGCTATAATTTTATAAGTTATATTTA 11 175 0 TATTTTATAA 0.718351 -126 GCAAAAGGGTTAAATTAATAAATGGAGTTTT 15 33 1 TAATTAATAA 0.793846 -105 TACAAAACATTACATTATTAAAATAATTAAG 15 83 0 TCATTATTAA 0.723234 -55 ATCCTTTCATTTTTAATGTTCAATAC 15 122 0 TCATTTTTAA 0.771352 -16 TATATTTTAATGCCTTAATAAAACTTATTGT 20 40 0 TCCTTAATAA 0.768079 -141 TACATATTTGTAAATTTATAAATC 25 4 0 TAATTTATAA 0.832657 -98 GAAGAGTTTTTAATTTAATAAAAATAGTTGA 25 58 0 TATTTAATAA 0.66371 -44 AATTAAAAGATGCATTTTTAATATATTTTTA 27 238 1 TCATTTTTAA 0.771355 -36 ATATGGATTATTCTTTTATAAAGTCGTTAAA 28 44 1 TCTTTTATAA 0.761102 -134 TATTATTACATTCATTTTTAATTTTAAAAAA 28 138 1 TCATTTTTAA 0.771352 -40 GTTCTAAATTATTAAATTATAACTA 29 116 0 TAATTATTAA 0.676339 -15 ATAGGATAATTGACTTAATAAAGCTTTATTA 30 230 0 TACTTAATAA 0.726121 -71 CTTTGTTTAATCAATTTATAAGGGTGTAGTT 31 11 0 TAATTTATAA 0.832657 -75 ATATATCTTTTTCTTTTATAATTATCTTTAT 31 54 1 TCTTTTATAA 0.761102 -32 ACTCCGAGTATAACTTTATAAGCTAAAATTA 34 102 1 TACTTTATAA 0.773899 -104 GCATTCAAATTTCCTTAATAAACTTTAATAC 36 26 0 TCCTTAATAA 0.768074 -105 TAGTAAGCACTTCCTTTTTAATTTTATCCAT 41 24 0 TCCTTTTTAA 0.698855 -220 ATTTAATTTTTTAATTATTTTTTA 44 4 1 TATTTTTTAA 0.580602 -147 * ********* Masking position 6 Map Score: 20.8366 Number of sites scoring better than the average of aligned sites = 461 Number in coding regions = 343 Number in noncoding regions = 118 Number of orfs with sites within 600 bp upstream = 120 Fraction of orfs with sites within 600 bp upstream = 0.019274 Motif number 9 TCAAACTGCGAAGTCCTATTCAAAGATTGC 3 77 1 AAGTCCTATT 0.839357 -206 TAAAAACACCAATTCCTATTTTTCTACTTT 8 14 1 AATTCCTATT 0.766161 -90 CATAGTCCTAAAGTTCAATAAG 9 3 1 TAGTCCTAAA 0.574467 -163 ATAAAGAAATAATTCCTAAATGCTCTTATT 11 12 1 AATTCCTAAA 0.88833 -289 TATATATAAAAAGTCCTATTATATTATTAA 12 30 1 AAGTCCTATT 0.839357 -271 TTTGAATATGAAATCCTATAATTTTCATTT 18 117 1 AAATCCTATA 0.851733 -68 CTAAAACAGTAATTCCTATATTTAAACTAA 19 76 1 AATTCCTATA 0.902111 -169 ATTCCTGCGAAAGTCCTATAGTAAGAGATA 20 71 0 AAGTCCTATA 0.93629 -110 TAAGCTGCGAAAGTCCTATCTACATAATGC 20 154 1 AAGTCCTATC 0.75399 -27 TAGGTATTAAAATTCCTAAAGAGATAGAAA 24 16 1 AATTCCTAAA 0.88833 -75 ATAAATAAATAATTCCTAAATACTCTCATT 30 42 1 AATTCCTAAA 0.88833 -259 ACAAAATTGAAAATCCTAAAACCCTAATAA 30 117 1 AAATCCTAAA 0.832179 -184 CCATCAGATGAAATCCTAAAGGATTTCATT 35 98 0 AAATCCTAAA 0.832179 -66 ********** Masking position 8 Map Score: 13.4247 Number of sites scoring better than the average of aligned sites = 105 Number in coding regions = 84 Number in noncoding regions = 21 Number of orfs with sites within 600 bp upstream = 21 Fraction of orfs with sites within 600 bp upstream = 0.00337295 Motif number 10 AAAAACCCAATGGGTTTTTAAATAAATTTA 1 108 0 TGGGTTTTTA 0.851885 -193 AAAAACCCATTGGGTTTTTATATTTTCCAT 1 119 1 TGGGTTTTTA 0.851885 -182 ATAAATTACCATAGCTTATATAATAAAGTT 2 39 1 ATAGCTTATA 0.448745 -52 GAAGCTCAAAAGGGCTTCTATACCAATAAC 4 43 0 AGGGCTTCTA 0.84553 -225 GAAGCCCTTTTGAGCTTCTATAAGTTTATT 4 55 1 TGAGCTTCTA 0.752085 -213 GGGATTATATATAGCTTTTATTTTAAAATA 6 101 0 ATAGCTTTTA 0.717161 -27 TGTTCAATACTTAGTTTTTACAAAACATTA 15 102 0 TTAGTTTTTA 0.638544 -36 AATTTAGTTTCTATTGAAATTTA 18 172 0 TTAGTTTCTA 0.539464 -13 TATTGTAAGCATGGTTTTTATAAGGGGGGA 20 16 0 ATGGTTTTTA 0.761197 -165 AATCTTTTGAAGAGTTTTTAATTTAATAAA 25 67 0 AGAGTTTTTA 0.761197 -35 TGTTATTTGTTTGGTTTCTAATTTTTAAAT 33 257 0 TTGGTTTCTA 0.678828 -44 TTTTATAATTTTAGCTTATAAAGTTATACT 34 108 0 TTAGCTTATA 0.448745 -98 AAAAGCCCTACGGGCTTTTATATTTATTCC 34 182 0 CGGGCTTTTA 0.658558 -24 AAAAGCCCGTAGGGCTTTTATAA 34 193 1 AGGGCTTTTA 0.891952 -13 ATATTGAGGATGAGCTTTTAAAATTGCATA 37 77 1 TGAGCTTTTA 0.820631 -108 TGTTTGTAATAGGGTTTATAATATATGACA 41 163 1 AGGGTTTATA 0.648692 -81 AATTGTGTAAATGGTTTTTATAGTTTCCTA 44 85 0 ATGGTTTTTA 0.761197 -66 ********** Masking position 6 Map Score: 8.72889 Number of sites scoring better than the average of aligned sites = 381 Number in coding regions = 314 Number in noncoding regions = 67 Number of orfs with sites within 600 bp upstream = 60 Fraction of orfs with sites within 600 bp upstream = 0.00963701 Motif number 11 TTTGAAAATAAACGGGGGAGATT 10 4 0 AACGGGGGAG 0.964106 -108 TTATTAGTCTAAGGGGTGAGAGA 10 99 1 AAGGGGTGAG 0.955813 -13 TATTGATGCTAAAGGTTGAGGGCCCATGGT 19 197 0 AAAGGTTGAG 0.705495 -48 TGGTTTTTATAAGGGGGGAGGTTT 20 5 0 AAGGGGGGAG 0.989537 -176 ATCAATTTATAAGGGTGTAGTT 31 3 0 AAGGGTGTAG 0.855091 -83 CCTTTGGGGTAAAGGGGCAGAACTCCACTG 33 131 0 AAAGGGGCAG 0.913037 -170 CCTTTACCCCAAAGGGGTAGTGAAATGATG 33 146 1 AAAGGGGTAG 0.925879 -155 TATTAGTCAAAAGGAGGGAGAGG 36 118 1 AAGGAGGGAG 0.913502 -13 ********** Masking position 2 Map Score: 3.9507 Number of sites scoring better than the average of aligned sites = 30 Number in coding regions = 20 Number in noncoding regions = 10 Number of orfs with sites within 600 bp upstream = 10 Fraction of orfs with sites within 600 bp upstream = 0.00160617 Motif number 12 ACATGGGTTGATAAACATAGTTATCTATTTATT 3 205 1 ATAAATATTA 0.811512 -78 AGTTTATTATATAACTATAAAAACTTTTGATGA 4 77 1 ATAAATAAAA 0.710176 -191 ATTAACTACCAAAATGATATAAATAACTTAGTT 4 138 0 AAAAATAAAA 0.764149 -130 ATTAACGATAATAATAATACTAACTAATATTAT 10 70 1 ATAAATATAA 0.728853 -42 CGCACCACCACAAACTATATATAAAAAGTCCTA 12 15 1 CAAAATAATA 0.672074 -286 AATATCACCAAAAAAGATATATAATGTTTGTTT 13 27 0 AAAAATAATA 0.838433 -23 TAAAATACTCAAAACAATATAAATGCTATT 14 73 1 AAAAATAAAA 0.764149 -20 AAATAGGTAAATAACGATATATAGTTGCTTATA 18 73 1 ATAAATAATA 0.796942 -112 AATAAGATAAAAAAGGATAAAAATTTTAATTTT 19 17 0 AAAAATAAAA 0.764149 -228 AGTATCACAAAGAATATTTATGATAAAATA 24 71 0 CAAAATATTA 0.692142 -20 AAACACAATAAAAAACATAAATACCTAATTATC 26 29 1 AAAAATAATA 0.838433 -61 ACTACTGCAAAAAATAATAAAAAATGTTTGTTT 27 132 0 AAAAATAAAA 0.764149 -142 ATAATATATTAAAAATATATTAAAAATGCATCT 27 245 0 AAAAATATAA 0.780423 -29 TATTATTAAACAAACTATAATTAAAATTATCTA 30 171 1 CAAAATATTA 0.692142 -130 TAAATTTTAGATAAAGATAATTATAAAAGAAAA 31 62 0 ATAAATATTA 0.811512 -24 ATAGGGTGAAATAAAGATATTTATAAAAATGCC 33 189 1 ATAAATATTA 0.811512 -112 TTTATAAGCTAAAATTATAAAAATGTGAAAATA 34 116 1 AAAAATAAAA 0.764149 -90 GATAATCTGAATAATAATAGTTAAATATATAAA 37 41 0 ATAAATATTA 0.811512 -144 TTAAAATTGCATAACTATATTTATGTTACTTAA 37 94 1 ATAAATATTA 0.811512 -91 GATTATTAGGAAAAGGATACTTAAAGTTAAGTA 37 120 0 AAAAATATTA 0.850584 -65 TATATCACCTAAGAATATTTAAAAAGCTAAT 43 62 0 CTAAATATTA 0.629677 -21 **** *** *** Masking position 8 Map Score: 20.6052 Number of sites scoring better than the average of aligned sites = 465 Number in coding regions = 302 Number in noncoding regions = 163 Number of orfs with sites within 600 bp upstream = 160 Fraction of orfs with sites within 600 bp upstream = 0.0256987 Motif number 13 CCACCGCCGAGCCCCACGGGACGAGACCTC 12 181 0 GCCCCACGGG 0.974558 -120 GGTTACATCTCCCCTACAGGAGATGCTCCC 12 211 0 CCCCTACAGG 0.965098 -90 ACCTGCCGAACCCCGCCAGGCCCGGAAGGG 12 247 1 CCCCGCCAGG 0.900357 -54 TACCGTTGCTCCCTTCCGGGCCTGGCGGGG 12 257 0 CCCTTCCGGG 0.911233 -44 AGGACGTCGGCGCTCACGGGG 12 290 1 CGCTCACGGG 0.827206 -11 TTATAAAAGCCCTACGGGCTTTTATATT 34 188 0 GCCCTACGGG 0.976207 -18 TCATTACTCGCCCCTACGGGGCGATTGCGA 35 73 0 CCCCTACGGG 0.903987 -91 ********** Masking position 7 Map Score: 3.24336 Number of sites scoring better than the average of aligned sites = 28 Number in coding regions = 3 Number in noncoding regions = 25 Number of orfs with sites within 600 bp upstream = 10 Fraction of orfs with sites within 600 bp upstream = 0.00160617 Motif number 14 GATGCTCCCCCACCGCCGAGCCCCACGGGAC 12 189 0 CACCCCGAGC 0.992322 -112 ATCAAATTTACACCTCCGAGCGTTAGCGAGG 35 27 1 CACCCCGAGC 0.992323 -137 TACTCCCTAACACCTCCTCGCTAACGCTCGG 35 42 0 CACCCCTCGC 0.984109 -122 AGCTAAGAGGCATCACCGAGCGTAGCGAGGT 42 45 1 CATCCCGAGC 0.982867 -59 AAAATGGATGCATCACCTCGCTACGCTCGGT 42 59 0 CATCCCTCGC 0.964894 -45 **** ****** Masking position 2 Map Score: 3.19886 Number of sites scoring better than the average of aligned sites = 17 Number in coding regions = 0 Number in noncoding regions = 17 Number of orfs with sites within 600 bp upstream = 20 Fraction of orfs with sites within 600 bp upstream = 0.00321234 Motif number 15 TCTCCCAGTCTGAGCTACCAGCCCACAAAACAAT 1 48 1 TGAGTCGCCC 0.86213 -253 GGGTTACAGGGGACGCCCAACCCCCCGGCCTAGC 12 72 0 GGACCCCCCC 0.942682 -229 AAGGACTGGAGGACATGCCGCCCCCAAGTTTTCG 12 128 0 GGACTCCCCC 0.985382 -173 GACTCCTCGATGAGGTCTCGTCCCGTGGGGCTCG 12 170 1 TGAGTTTCCC 0.844402 -131 CTCCCCTACAGGAGATGCTCCCCCACCGCCGAGC 12 199 0 GGAGTCCCCC 0.989326 -102 CTCCTGTAGGGGAGATGTAACCCCCTTTACCTGC 12 219 1 GGAGTTCCCC 0.907138 -82 TGCATTAAATGGACTTTCAGTCCCTTAATGTCTC 18 30 1 GGACTCTCCC 0.965379 -155 TATATTAAAAGGAGCTTTCATCCCCTTAATGTCT 22 13 0 GGAGTTTCCC 0.964982 -75 ATGACCCAGTGGAGTTCTGCCCCTTTACCCCAAA 33 125 1 GGAGTTCCCT 0.87359 -176 **** * * **** Masking position 3 Map Score: 4.7017 Number of sites scoring better than the average of aligned sites = 33 Number in coding regions = 19 Number in noncoding regions = 14 Number of orfs with sites within 600 bp upstream = 8 Fraction of orfs with sites within 600 bp upstream = 0.00128493